Psyllid ID: psy2145
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 808 | 2.2.26 [Sep-21-2011] | |||||||
| Q9I7U4 | 18141 | Titin OS=Drosophila melan | yes | N/A | 0.512 | 0.022 | 0.706 | 0.0 | |
| O01761 | 8081 | Muscle M-line assembly pr | no | N/A | 0.688 | 0.068 | 0.254 | 1e-39 | |
| Q8WZ42 | 34350 | Titin OS=Homo sapiens GN= | no | N/A | 0.252 | 0.005 | 0.336 | 1e-29 | |
| A2ASS6 | 35213 | Titin OS=Mus musculus GN= | no | N/A | 0.261 | 0.005 | 0.337 | 2e-29 | |
| Q15746 | 1914 | Myosin light chain kinase | no | N/A | 0.362 | 0.153 | 0.284 | 5e-25 | |
| Q23551 | 7158 | Twitchin OS=Caenorhabditi | no | N/A | 0.553 | 0.062 | 0.244 | 3e-23 | |
| Q15772 | 3267 | Striated muscle preferent | no | N/A | 0.636 | 0.157 | 0.236 | 3e-23 | |
| P11799 | 1906 | Myosin light chain kinase | no | N/A | 0.329 | 0.139 | 0.269 | 8e-21 | |
| Q6PDN3 | 1941 | Myosin light chain kinase | no | N/A | 0.331 | 0.138 | 0.279 | 2e-20 | |
| Q63638 | 3259 | Striated muscle-specific | no | N/A | 0.641 | 0.158 | 0.234 | 2e-19 |
| >sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/415 (70%), Positives = 341/415 (82%), Gaps = 1/415 (0%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T PKS+ N RE GHAHFECK+EPVTD NLKVEWFKNGRP+T+GHRFRPIHDFGYVALDI
Sbjct: 1427 LTHPKSLTNTREGGHAHFECKIEPVTDPNLKVEWFKNGRPITVGHRFRPIHDFGYVALDI 1486
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ I EDSG YTCRAVNL+G E Q LQCR I+T TQNE GLEQI YLED+S+Y R
Sbjct: 1487 VHLIAEDSGVYTCRAVNLIGSDETQVELQCRSGEQIVTVTQNEAGLEQIHYLEDRSRYTR 1546
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
E I+E+T QAP+FTTSLKN EIKE QRAHFECRLIPVSD +M+VEW+HNN+P+KSGSRF
Sbjct: 1547 REEIDESTKQAPVFTTSLKNVEIKENQRAHFECRLIPVSDPSMRVEWYHNNLPLKSGSRF 1606
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM LPED+G YTCRA NA+G+A+TS +VH+KKSI E+QH +L
Sbjct: 1607 TETNNFGFVALDIMSTLPEDAGTYTCRAYNAVGEAITSAVAVVHTKKSIYLESQHETALP 1666
Query: 293 RLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
RLQ LE G + QR S+ ++ VSQAPVFT P+RD+ VAENQA HFEARLIPVGD KL V W
Sbjct: 1667 RLQHLEDGSKRQRISVQDEFVSQAPVFTMPVRDVRVAENQAVHFEARLIPVGDPKLTVEW 1726
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNG PI+ASNR +TMHDFGYVALN KY PEDSGTYTCRAVNELG+AVTS++L V+SK
Sbjct: 1727 LRNGQPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRAVNELGQAVTSASLIVQSKT 1786
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEG 466
S+QL+TQ+EAA+ KI LED SR++R+EEEE VT P F +L GP+ LVEG+
Sbjct: 1787 SIQLETQHEAAMHKIHQLEDHSRYQRREEEEYTVTTAPVFVTKLIGPSNLVEGQS 1841
|
Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Drosophila melanogaster (taxid: 7227) |
| >sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 169/664 (25%), Positives = 274/664 (41%), Gaps = 108/664 (16%)
Query: 84 VEWFKNGRPVTI--GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
VEW K+G+PV H + G ++ I D EDSG Y CRA N G A+ +A
Sbjct: 3317 VEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLEDSGKYACRATNPAGEAKTEANFA 3376
Query: 142 CRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRA 201
++ L P F L E+KE +
Sbjct: 3377 V------------------VKNL-----------------VPPEFVEKLSPLEVKEKEST 3401
Query: 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSR--FTETNNFGFVALDIMQCLPEDSGVYTCR 259
+++ + + VEWF ++ PI + + G +L I D G+Y+CR
Sbjct: 3402 TLSVKVVGTPEPS--VEWFKDDTPISIDNVHVIQKQTAVGSFSLTINDARQGDVGIYSCR 3459
Query: 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT 319
A N G+A+T+ N II D++ P FT
Sbjct: 3460 ARNEAGEALTTANF--------------------------------GIIRDSI--PPEFT 3485
Query: 320 QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD--FGYVALNF 377
Q +R + V E + + +I G V W ++ PI N D G+ L
Sbjct: 3486 QKLRPLEVREQETLDLKVTVI--GTPVPNVEWFKDDKPINIDNSHIFAKDEGSGHHTLTI 3543
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFV--ESKASLQLDTQNEAALQKIQNLEDTSRF 435
K ED G YTC+A NE GEA T++ + V E +A L + +++ + E R
Sbjct: 3544 KQARGEDVGVYTCKATNEAGEAKTTANMAVQEEIEAPLFVQGLKPYEVEQGKPAELVVRV 3603
Query: 436 KRKEEEEVEVTQQPSFTVQLNGPTELVEGEG------TIITDTQHP-------KGLEKIR 482
+ K E EV+ + + ++ ++E +G +I DT + + K
Sbjct: 3604 EGKPEPEVKWFKD-GVPIAIDN-QHVIEKKGENGSHTLVIKDTNNADFGKYTCQATNKAG 3661
Query: 483 KLEDTEPHKRPEVD---DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVE 539
K E K P+ A + +P+F +PL+ AV EG C++ P +K
Sbjct: 3662 KDETVGELKIPKYSFEKQTAEEVKPLFIEPLKETFAV-EGDTVVLECKVNKESHPQIK-- 3718
Query: 540 WFRNEKPLEDSSRITTK-HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598
+F+N++P+E + + + G + + + + + ED G Y C+A N G+A T A +KI+
Sbjct: 3719 FFKNDQPVEIGQHMQLEVLEDGNIKLTIQNAKKEDVGAYRCEAVNVAGKANTNADLKIQF 3778
Query: 599 KAGLQLETQHPEG-LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657
A ++ G L++I + E + + P F +LL + + E Q A
Sbjct: 3779 AAKVEEHVTDESGQLEEIGQFETVGDTASSKTDTGRGAPEFVELLRSCT-VTEKQQAILK 3837
Query: 658 CRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAINR 716
C+V G+P + +W G E++M +R +H D G +TL AD+G Y C+A N
Sbjct: 3838 CKV--KGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTLTFDNVTQADAGEYRCEAENE 3895
Query: 717 AGEA 720
G A
Sbjct: 3896 YGSA 3899
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Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 25/229 (10%)
Query: 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581
AHF CRL P+GDPT+ VEW + KPLE ++R+ ++FGY ++D + D GI C+A
Sbjct: 1720 AHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMINEFGYCSLDYGVAYSRDSGIITCRA 1779
Query: 582 TNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641
TN G T+A++ +K + L E+Q PEG K +Q +E E ER + T +
Sbjct: 1780 TNKYGTDHTSATLIVKDEKSLVEESQLPEGRKGLQRIE--------ELERMAHEGALTGV 1831
Query: 642 LTGTSE--------------IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV 687
T E ++EG++A + CRV G P + W++NG ++ RF V
Sbjct: 1832 TTDQKEKQKPDIVLYPEPVRVLEGETARFRCRV--TGYPQPKVNWYLNGQLIRKSKRFRV 1889
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
++D G LDI C D+G A N G L+++ + D S
Sbjct: 1890 RYD-GIHYLDIVDCKSYDTGEVKVTAENPEGVIEHKVKLEIQQREDFRS 1937
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 11/222 (4%)
Query: 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581
AHF CRL P+GDPT+ VEW + KPLE ++R+ ++FGY ++D + D G+ C+A
Sbjct: 1726 AHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMINEFGYCSLDYGAAYSRDSGVITCRA 1785
Query: 582 TNALGEAVTTASMKIKTKAGLQLETQHPE---GLKKIQELEQPASPMP----QEPERQYE 634
TN G T+A++ +K + L E+Q P+ GL++I+ELE+ A +++ +
Sbjct: 1786 TNKYGTDHTSATLIVKDEKSLVEESQLPDGKKGLQRIEELERMAHEGALTGVTTDQKEKQ 1845
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
KP L ++EG++A + CRV G P + W++NG ++ RF V++D G
Sbjct: 1846 KPDIV-LFPEPVRVLEGETARFRCRV--TGYPQPKVNWYLNGQLIRKSKRFRVRYD-GIH 1901
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
LDI C D+G A N G L+++ + D S
Sbjct: 1902 YLDIVDCKSYDTGEVKVTAENPEGVTEHKVKLEIQQREDFRS 1943
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q15746|MYLK_HUMAN Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 147/358 (41%), Gaps = 65/358 (18%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALDI 112
+KP+S E ++E F C++ + +V WF G PV ++ D G L +
Sbjct: 418 SKPQSQE-VKENQTVKFRCEVSGIPKP--EVAWFLEGTPVRRQEGSIEVYEDAGSHYLCL 474
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ DSGTY+C A N G TLQ +E++ +E
Sbjct: 475 LKARTRDSGTYSCTASNAQGQLSCSWTLQ----------------VERLAVME------- 511
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC--RLIPVSDNTMKVEWFHNNVPIKSGS 230
AP F++ LK+C + EGQ +C R PV ++ W N PI+
Sbjct: 512 ---------VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP----RITWLLNGQPIQYAR 558
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
E G L I LPED G YTC A NALGQ S + VH KKS +
Sbjct: 559 STCEA---GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVHEKKSSR-------- 607
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ + + + AP+F Q + D+ V + ++ G+ +V
Sbjct: 608 ----------KSEYLLPVAPSKPTAPIFLQGLSDLKVMDGSQVTMTVQV--SGNPPPEVI 655
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
WL NG IQ S +L + +PED+GTYTC A N GE T + L V+
Sbjct: 656 WLHNGNEIQESEDFHFEQRGTQHSLCIQEVFPEDTGTYTCEAWNSAGEVRTQAVLTVQ 713
|
Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Responsible for high proliferative ability of breast cancer cells through anti-apoptosis. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 131/536 (24%), Positives = 210/536 (39%), Gaps = 89/536 (16%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P F E+ EGQ A+F CR+I S V W ++ +K ++ + N L
Sbjct: 6585 PRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGL 6642
Query: 244 DIMQCLPEDSGVYTCRAVNALG--QAVTSGNLLVHS---KKSIQTETQHGESLSRLQQLE 298
I + +D G YT RA N+ G + + N+ HS K + S R+++ +
Sbjct: 6643 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEPLEPMKKAPSPPRVEEFK 6702
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ R AP FT +R+ + +N L G+ + W+++G P+
Sbjct: 6703 ERR------------SAPFFTFHLRNRLIQKNHQCKLTCSL--QGNPNPTIEWMKDGHPV 6748
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
+RV G +L +D+GTYT A N+LG V+ L V++K
Sbjct: 6749 D-EDRVQVSFRSGVCSLEIFNARVDDAGTYTVTATNDLGVDVSECVLTVQTKGG------ 6801
Query: 419 NEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGL 478
+ + S F+ + + T GT + + +
Sbjct: 6802 --------EPIPRVSSFRPRRAYDTLST-------------------GTDVERSHSYADM 6834
Query: 479 EKIRKLEDTEPHKRPEVDDNATK---QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT 535
+ + D P R DD TK + P FT L + + E G +A FS + G P
Sbjct: 6835 RRRSLIRDVSPDVRSAADDLKTKITNELPSFTAQLSDSE-TEVGGSAEFSAAV--SGQPE 6891
Query: 536 LKVEWFRN-EKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594
+EW N E+ E SR + G + +S + DEG Y+C+A+N+ G+ T A++
Sbjct: 6892 PLIEWLHNGERISESDSRFRASYVAGKATLRISDAKKSDEGQYLCRASNSAGQEQTRATL 6951
Query: 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM-EGQS 653
+K G Q G EL T+ L G EI+ G+S
Sbjct: 6952 TVK---GDQPLLNGHAGQAVESELR------------------VTKHLGG--EIVNNGES 6988
Query: 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
++ RV G P W NG EL G + + D ++ I +D+G Y
Sbjct: 6989 VTFEARV--QGTPEEVL-WMRNGQELTNGDKTSISQDGETLSFTINSADASDAGHY 7041
|
Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein kinase OS=Homo sapiens GN=SPEG PE=1 SV=4 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 144/610 (23%), Positives = 242/610 (39%), Gaps = 96/610 (15%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
E +AP+F L+N + G +C I ++ +V W + ++S R
Sbjct: 716 EEPLEAPVFEIPLQNVVVAPGADVLLKC--IITANPPPQVSWHKDGSALRSEGRLLLRAE 773
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ------TETQHGESL 291
L + + D+G Y A N LGQA + +L V S T + S
Sbjct: 774 GERHTLLLREARAADAGSYMATATNELGQATCAASLTVRPGGSTSPFSSPITSDEEYLSP 833
Query: 292 SRLQQLEQGRYQRTSIIE----------DTVSQAP-VFTQPMRDIHVAENQAAHFEARLI 340
+ RT ++ DT S+AP F + D V E Q R+
Sbjct: 834 PEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRV- 892
Query: 341 PVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
G+ K V+WLRN P++ R + + G L D+G YTC+AVNE G
Sbjct: 893 -QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 951
Query: 400 VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPT 459
+ L V + ++++ A L +Q+++ V + F + GPT
Sbjct: 952 QCEARLEVRAHP----ESRSLAVLAPLQDVD------------VGAGEMALFECLVAGPT 995
Query: 460 E-----LVEG---EGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNAT----------- 500
+ L G + ++ H G + KL T H+ DD+
Sbjct: 996 DVEVDWLCRGRLLQPALLKCKMHFDG--RKCKLLLTSVHE----DDSGVYTCKLSTAKDE 1049
Query: 501 -----------KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
P+FT+ L++++ V EG+ A F C++ G P V W P+E+
Sbjct: 1050 LTCSARLTVRPSLAPLFTRLLEDVE-VLEGRAARFDCKI--SGTPPPVVTWTHFGCPMEE 1106
Query: 550 SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
S + + D G ++ ++HV +EDEG+Y A N G+A +A + ++ + T
Sbjct: 1107 SENLRLRQDGGLHSLHIAHVGSEDEGLYAVSAVNTHGQAHCSAQLYVE-----EPRTAAS 1161
Query: 610 EGLKKIQELEQPASPMPQEPER----QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD 665
K++++ +P+EPE+ + P F + L E+ + A +C+V +
Sbjct: 1162 GPSSKLEKMPS----IPEEPEQGELERLSIPDFLRPLQDL-EVGLAKEAMLECQVTGLPY 1216
Query: 666 PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725
PT+ WF NG ++ + L P +GVY N+ G+A
Sbjct: 1217 PTI--SWFHNGHRIQSSDDRRMTQYRDVHRLVFPAVGPQHAGVYKSVIANKLGKAACYAH 1274
Query: 726 LKVKSKSDIV 735
L V +D+V
Sbjct: 1275 LYV---TDVV 1281
|
Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle OS=Gallus gallus PE=1 SV=2 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 132/327 (40%), Gaps = 61/327 (18%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
VEWFK G P+ G + + G L + DSG+Y+C A N G L
Sbjct: 460 VEWFKEGVPIKTGEGIQIYEEDGTHCLWLKKACLGDSGSYSCAAFNPRGQTSTSWLL--- 516
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
T +E++ AP F++ LK C + EGQ
Sbjct: 517 --------TVKRPKVEEV---------------------APCFSSVLKGCTVSEGQDFVL 547
Query: 204 ECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261
+C + +PV + + W N PI+ E G L + LPED G+YTC A
Sbjct: 548 QCYVGGVPVPE----ITWLLNEQPIQYAHSTFEA---GVAKLTVQDALPEDDGIYTCLAE 600
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
N G+A S + V KKS ++ G ++L + + AP+F +
Sbjct: 601 NNAGRASCSAQVTVKEKKS--SKKAEGTQAAKLNK----------------TFAPIFLKG 642
Query: 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY 381
+ D+ V + + + ++ WL NG IQ + +L + +
Sbjct: 643 LTDLKVMDGSQVIMTVEV--SANPCPEIIWLHNGKEIQETEDFHFEKKGNEYSLYIQEVF 700
Query: 382 PEDSGTYTCRAVNELGEAVTSSTLFVE 408
PED+G YTC A NELGE T +TL V+
Sbjct: 701 PEDTGKYTCEAWNELGETQTQATLTVQ 727
|
Phosphorylates a specific serine in the N-terminus of a myosin light chain, which leads to the formation of calmodulin/MLCK signal transduction complexes which allow selective transduction of calcium signals. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q6PDN3|MYLK_MOUSE Myosin light chain kinase, smooth muscle OS=Mus musculus GN=Mylk PE=1 SV=3 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 129/326 (39%), Gaps = 58/326 (17%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVA-LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
V WF G PV +++ G L ++ DS Y+C A N +G Q
Sbjct: 433 VGWFLEGIPVRRREGITEVYEDGVSHHLCLLRARTRDSRKYSCTASNSLG--------QV 484
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
S +L N L Q AP F++ LK+ + EGQ
Sbjct: 485 SCSWSLLVDRPN---LAQT---------------------APSFSSVLKDSVVIEGQDFV 520
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262
C + +V W N PI+ E G L I LPED G YTC A N
Sbjct: 521 LRCSV--QGTPAPRVTWLLNGQPIQFAHSICEA---GVAELHIQDALPEDRGTYTCLAEN 575
Query: 263 ALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM 322
A+GQ S + V KK + E +H S +R + + AP+F Q +
Sbjct: 576 AMGQVSCSATVTVQEKKG-EGEREHRLSPARSKPI-----------------APIFLQGL 617
Query: 323 RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYP 382
D+ V + ++ G+ +V WL +G IQ S G+ +L + +P
Sbjct: 618 SDLKVMDGSQVTMTVQV--SGNPPPEVIWLHDGNEIQESEDFHFEQKGGWHSLCIQEVFP 675
Query: 383 EDSGTYTCRAVNELGEAVTSSTLFVE 408
ED+GTYTC A N GE T + L V+
Sbjct: 676 EDTGTYTCEAWNSAGEVRTRAVLTVQ 701
|
Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q63638|SPEG_RAT Striated muscle-specific serine/threonine-protein kinase OS=Rattus norvegicus GN=Speg PE=2 SV=2 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 142/606 (23%), Positives = 240/606 (39%), Gaps = 88/606 (14%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
E +AP+F L+N + G +C I ++ +V W + + S R
Sbjct: 721 EEPLEAPVFEIPLQNMVVAPGADVLLKC--IITANPPPQVSWKKDGSVLHSEGRLLIRAE 778
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS-------IQTETQH--- 287
L + + D+G YT A N LGQA + +L V S I ++ ++
Sbjct: 779 GERHTLLLREAQAADAGSYTATATNELGQASCASSLAVRPGASTSPFSSPITSDEEYLSP 838
Query: 288 -------GESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI 340
GE+ SR ++ Q + + P F + D V E Q R+
Sbjct: 839 PEEFPEPGETWSRTPTMKPSPSQDRDSSDSSSKAPPTFKVSLMDQSVREGQDVIMSIRV- 897
Query: 341 PVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
G+ K V+WLRN P++ R + + G L D+G YTC+AVNE G
Sbjct: 898 -QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 956
Query: 400 VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPT 459
+ L V + ++++ A L +Q+++ V + F + GP
Sbjct: 957 QCEARLEVRAHP----ESRSLAVLAPLQDVD------------VGAGEMALFECLVAGPA 1000
Query: 460 E-----LVEG---EGTIITDTQHPKGLEKIRKLEDTEPH---------KRPEVDDNAT-- 500
+ L G + ++ H G + KL T H K V D T
Sbjct: 1001 DVEVDWLCRGRLLQPALLKCKMHFDG--RKCKLLLTSVHEDDSGVYTCKLSTVKDELTCS 1058
Query: 501 -------KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI 553
P+FT+ L++++ V EG+ A C++ G P V W P+ +S +
Sbjct: 1059 ARLTVRPSLAPLFTRLLEDVE-VLEGRAARLDCKI--SGTPPPSVTWTHFGHPVNESENL 1115
Query: 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLK 613
+ D G ++ ++ V +EDEG+Y ATN G+A +A + ++ + T
Sbjct: 1116 RLRQDGGLHSLHIARVGSEDEGLYEVSATNTHGQAHCSAQLYVE-----EPRTAASGPSS 1170
Query: 614 KIQELEQPASPMPQEPE----RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
K++++ +P+EPE + P F + L E+ + A +C+V + PT+
Sbjct: 1171 KLEKMPS----IPEEPEHGDLERLSIPDFLRPLQDL-EVGLAKEAMLECQVTGLPYPTI- 1224
Query: 670 FEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
WF NG ++ + L P +GVY N+ G+A L V
Sbjct: 1225 -SWFHNGHRIQSSDDRRMTQYRDIHRLVFPAVGPQHAGVYKSVIANKLGKAACYAHLYV- 1282
Query: 730 SKSDIV 735
+D+V
Sbjct: 1283 --TDVV 1286
|
Isoform 2 may have a role in regulating the growth and differentiation of arterial smooth muscle cells. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 808 | ||||||
| 328711567 | 6663 | PREDICTED: titin-like [Acyrthosiphon pis | 0.856 | 0.103 | 0.544 | 0.0 | |
| 189235987 | 20466 | PREDICTED: similar to BMKETTIN [Triboliu | 0.839 | 0.033 | 0.509 | 0.0 | |
| 270004992 | 18024 | hypothetical protein TcasGA2_TC030701 [T | 0.839 | 0.037 | 0.509 | 0.0 | |
| 195439844 | 4804 | GK12605 [Drosophila willistoni] gi|19416 | 0.844 | 0.141 | 0.516 | 0.0 | |
| 242022532 | 4792 | conserved hypothetical protein [Pediculu | 0.842 | 0.142 | 0.525 | 0.0 | |
| 195126731 | 4800 | GI12167 [Drosophila mojavensis] gi|19391 | 0.844 | 0.142 | 0.512 | 0.0 | |
| 194746956 | 4792 | GF24936 [Drosophila ananassae] gi|190623 | 0.844 | 0.142 | 0.513 | 0.0 | |
| 158285443 | 15844 | AGAP007563-PA [Anopheles gambiae str. PE | 0.842 | 0.042 | 0.517 | 0.0 | |
| 170042390 | 9108 | titin [Culex quinquefasciatus] gi|167865 | 0.825 | 0.073 | 0.510 | 0.0 | |
| 195336808 | 4796 | GM14142 [Drosophila sechellia] gi|194128 | 0.844 | 0.142 | 0.509 | 0.0 |
| >gi|328711567|ref|XP_003244574.1| PREDICTED: titin-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/772 (54%), Positives = 516/772 (66%), Gaps = 80/772 (10%)
Query: 39 QENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR 98
+E+ K K F+ +KPK++ENL+E HAHFECKLEPVTDSNL+V+WFKNG+P+ IGHR
Sbjct: 1415 EESVKIKPRFL----SKPKNVENLKEGQHAHFECKLEPVTDSNLEVQWFKNGKPIIIGHR 1470
Query: 99 FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGL 158
FRPIHDFGYVALDIID I ED+GTYTCRAVNL+G E L CR S+GI+T TQNE GL
Sbjct: 1471 FRPIHDFGYVALDIIDVIEEDTGTYTCRAVNLLGVDETNVHLTCRSSSGIVTDTQNEMGL 1530
Query: 159 EQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVE 218
EQIQYLE+KS+Y R E IEETTTQAPIFTTSLK+C+IKEGQRAHFECRLIPVSDNTMKVE
Sbjct: 1531 EQIQYLEEKSRYNRREDIEETTTQAPIFTTSLKHCDIKEGQRAHFECRLIPVSDNTMKVE 1590
Query: 219 WFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
WFHNNVPIK GSRFTETNNFGFVALDI+QCLPEDSG YTCRA N LGQ++TSGNL V S+
Sbjct: 1591 WFHNNVPIKFGSRFTETNNFGFVALDILQCLPEDSGTYTCRATNWLGQSITSGNLNVQSR 1650
Query: 279 KSIQTETQHGESLSRLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEA 337
KSI E+QH ++L RL QLE RYQR SIIED V+QAPVFTQPMRD + E+Q AHFEA
Sbjct: 1651 KSIYLESQHEDALGRLAQLENSNRYQRQSIIEDAVTQAPVFTQPMRDSTMIESQPAHFEA 1710
Query: 338 RLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
RLIPVGD KLKV WLRNG+PIQASNRVSTMHDFGYVALN KY YPEDSGTYTCRA+N+LG
Sbjct: 1711 RLIPVGDDKLKVEWLRNGIPIQASNRVSTMHDFGYVALNLKYVYPEDSGTYTCRAINDLG 1770
Query: 398 EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG 457
+AVTS+TL V SK A+LQ
Sbjct: 1771 QAVTSATLNVHSK----------ASLQ--------------------------------- 1787
Query: 458 PTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVE 517
++QH L+K+R+LED+ +KR E + + P F PL +++
Sbjct: 1788 ------------LESQHEAALDKLRQLEDSNRYKRTEQKEVEVTEAPKFIVPLNGTESLI 1835
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
EG++AH+ CR+ P D TL++EW N KPL+ R T +DFG+ ++D+ ED G Y
Sbjct: 1836 EGQSAHYECRIEPYPDHTLQLEWLHNGKPLQTGHRFRTTYDFGFASLDVLSALPEDSGEY 1895
Query: 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA--SPMPQEPERQYEK 635
C+A N LG A ++ + ++++A + +TQH L KIQ LE + E EK
Sbjct: 1896 TCRAINKLGRAESSVKLGVQSRASIISDTQHQGALNKIQYLEDDSRFKRAAAEDVLMTEK 1955
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P F + L + EG+S H + ++PV DPTM+ EW+ NG+ + G RF +DFG+V
Sbjct: 1956 PQFGRPLKNIEHLPEGRSVHLEATLIPVNDPTMKVEWYRNGIPIPQGHRFKTVYDFGFVA 2015
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMN 755
LD+ P DSG YMCKA N AGEAV++ + V SKS + ++L D KKI+ EA
Sbjct: 2016 LDVLYAYPEDSGTYMCKAKNAAGEAVTTCIVTVDSKSGLQLDTLDEDRLKKIKQLEA-YE 2074
Query: 756 KPDAWKKIQLKEAEMNKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLE 807
+P A +EA V E+ Q PVF T L + L+E +H HLE
Sbjct: 2075 RPTA------QEA----VFEL-------QKPVFLTPLNSLELLKEGEHAHLE 2109
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189235987|ref|XP_971849.2| PREDICTED: similar to BMKETTIN [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/755 (50%), Positives = 506/755 (67%), Gaps = 77/755 (10%)
Query: 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI 116
K+IENL E AH E L PV D ++VEWF NGRP+ GHRF+ +DFG+VALDI+
Sbjct: 1941 KTIENLPEGSSAHLEATLTPVNDPTMRVEWFCNGRPIQTGHRFKTTYDFGFVALDILYAY 2000
Query: 117 PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176
EDSGTY CRA N G A A +Q +G+ T +E L++I+ LE + ++ E
Sbjct: 2001 AEDSGTYMCRARNAAGEAVTTANVQVIAKSGLYLDTMDEQRLKKIRDLESYERPKKEEV- 2059
Query: 177 EETTTQAPIFTTSLKNCE-IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET 235
E Q P+F T L + E +KEG+ AH ECR+ PV+D +K+EWF N V +++G RF T
Sbjct: 2060 -EAPPQRPVFLTPLVSLENLKEGEHAHLECRVEPVNDANLKIEWFVNGVKLRAGHRFRTT 2118
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
++FG+VALD++ PEDSG Y C+A N +G+AV + + V +KSI +T H E L +++
Sbjct: 2119 HDFGYVALDVLYTYPEDSGTYMCKATNLVGEAVNTCTIKVGGRKSILLDTHHPEGLEKIR 2178
Query: 296 QLE-QGRYQRTSIIEDTVSQAPVFTQPMR-DIHVAENQAAHFEARLIPVGDSKLKVTWLR 353
+LE QG R + E+ + P +R + E Q AHFEA++ P+ D L++ +
Sbjct: 2179 ELEAQGHPTRLEV-EEPIPTPPRLVTELRGTTEIYEGQTAHFEAQVEPIHDPNLRIEFYH 2237
Query: 354 NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413
NG P+ +++R DFGY+AL+ + PED+G
Sbjct: 2238 NGKPLPSASRFHITFDFGYIALDIGHCVPEDAG--------------------------- 2270
Query: 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473
E ++ I NL Q + ++ L V + II ++Q
Sbjct: 2271 ------EYTVKAINNL-----------------GQCTSSINLK-----VIAKSNIILESQ 2302
Query: 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD 533
P+GL+KIR+LE+ +P+KRPE D+ T+QRPVFT+PLQNID+++EG+ AHF CRLIPVGD
Sbjct: 2303 RPEGLDKIRQLEEHQPYKRPEHDEPVTRQRPVFTQPLQNIDSIQEGQTAHFECRLIPVGD 2362
Query: 534 PTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
PTLKVEWFRNEKPLEDSSRIT HDFG+V++D++HVR EDEG+YIC+A+N LGEAVTTAS
Sbjct: 2363 PTLKVEWFRNEKPLEDSSRITKVHDFGFVSLDITHVRDEDEGVYICRASNPLGEAVTTAS 2422
Query: 594 MKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653
MKI+TKA +QLE+QHPE +KI +LEQP +P P+EPER +EKPIFTQLLTG +E+ EGQ
Sbjct: 2423 MKIRTKASIQLESQHPEAQRKIAQLEQPLAPRPEEPERHFEKPIFTQLLTGPTELWEGQH 2482
Query: 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713
AH++ RVVPVGDP++RFEW+VNGVELK+GSRF V HDFG+VTLDI VP DSGVYMCKA
Sbjct: 2483 AHFEARVVPVGDPSLRFEWYVNGVELKLGSRFKVTHDFGFVTLDIMSTVPEDSGVYMCKA 2542
Query: 714 INRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAEMNKV 773
IN++GEAVSS S+KVKSKS+IV E+LQPDAW+KIQL KEAEMNKV
Sbjct: 2543 INKSGEAVSSISMKVKSKSNIVGETLQPDAWQKIQL----------------KEAEMNKV 2586
Query: 774 PEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
PEMF+DT PQQ PVFTTHL++ +L E QHV+LEA
Sbjct: 2587 PEMFVDTTPQQPPVFTTHLKSYDKLVEGQHVYLEA 2621
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270004992|gb|EFA01440.1| hypothetical protein TcasGA2_TC030701 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/755 (50%), Positives = 506/755 (67%), Gaps = 77/755 (10%)
Query: 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI 116
K+IENL E AH E L PV D ++VEWF NGRP+ GHRF+ +DFG+VALDI+
Sbjct: 1927 KTIENLPEGSSAHLEATLTPVNDPTMRVEWFCNGRPIQTGHRFKTTYDFGFVALDILYAY 1986
Query: 117 PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176
EDSGTY CRA N G A A +Q +G+ T +E L++I+ LE + ++ E
Sbjct: 1987 AEDSGTYMCRARNAAGEAVTTANVQVIAKSGLYLDTMDEQRLKKIRDLESYERPKKEEV- 2045
Query: 177 EETTTQAPIFTTSLKNCE-IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET 235
E Q P+F T L + E +KEG+ AH ECR+ PV+D +K+EWF N V +++G RF T
Sbjct: 2046 -EAPPQRPVFLTPLVSLENLKEGEHAHLECRVEPVNDANLKIEWFVNGVKLRAGHRFRTT 2104
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
++FG+VALD++ PEDSG Y C+A N +G+AV + + V +KSI +T H E L +++
Sbjct: 2105 HDFGYVALDVLYTYPEDSGTYMCKATNLVGEAVNTCTIKVGGRKSILLDTHHPEGLEKIR 2164
Query: 296 QLE-QGRYQRTSIIEDTVSQAPVFTQPMR-DIHVAENQAAHFEARLIPVGDSKLKVTWLR 353
+LE QG R + E+ + P +R + E Q AHFEA++ P+ D L++ +
Sbjct: 2165 ELEAQGHPTRLEV-EEPIPTPPRLVTELRGTTEIYEGQTAHFEAQVEPIHDPNLRIEFYH 2223
Query: 354 NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413
NG P+ +++R DFGY+AL+ + PED+G
Sbjct: 2224 NGKPLPSASRFHITFDFGYIALDIGHCVPEDAG--------------------------- 2256
Query: 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473
E ++ I NL Q + ++ L V + II ++Q
Sbjct: 2257 ------EYTVKAINNL-----------------GQCTSSINLK-----VIAKSNIILESQ 2288
Query: 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD 533
P+GL+KIR+LE+ +P+KRPE D+ T+QRPVFT+PLQNID+++EG+ AHF CRLIPVGD
Sbjct: 2289 RPEGLDKIRQLEEHQPYKRPEHDEPVTRQRPVFTQPLQNIDSIQEGQTAHFECRLIPVGD 2348
Query: 534 PTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
PTLKVEWFRNEKPLEDSSRIT HDFG+V++D++HVR EDEG+YIC+A+N LGEAVTTAS
Sbjct: 2349 PTLKVEWFRNEKPLEDSSRITKVHDFGFVSLDITHVRDEDEGVYICRASNPLGEAVTTAS 2408
Query: 594 MKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653
MKI+TKA +QLE+QHPE +KI +LEQP +P P+EPER +EKPIFTQLLTG +E+ EGQ
Sbjct: 2409 MKIRTKASIQLESQHPEAQRKIAQLEQPLAPRPEEPERHFEKPIFTQLLTGPTELWEGQH 2468
Query: 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713
AH++ RVVPVGDP++RFEW+VNGVELK+GSRF V HDFG+VTLDI VP DSGVYMCKA
Sbjct: 2469 AHFEARVVPVGDPSLRFEWYVNGVELKLGSRFKVTHDFGFVTLDIMSTVPEDSGVYMCKA 2528
Query: 714 INRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAEMNKV 773
IN++GEAVSS S+KVKSKS+IV E+LQPDAW+KIQL KEAEMNKV
Sbjct: 2529 INKSGEAVSSISMKVKSKSNIVGETLQPDAWQKIQL----------------KEAEMNKV 2572
Query: 774 PEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
PEMF+DT PQQ PVFTTHL++ +L E QHV+LEA
Sbjct: 2573 PEMFVDTTPQQPPVFTTHLKSYDKLVEGQHVYLEA 2607
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195439844|ref|XP_002067769.1| GK12605 [Drosophila willistoni] gi|194163854|gb|EDW78755.1| GK12605 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/759 (51%), Positives = 495/759 (65%), Gaps = 77/759 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T PKS+ N RE GHAHFECK+EPVTD NLKVEWFKNGRP+T+GHRFRPIHDFGYVALDI
Sbjct: 1435 LTHPKSLTNTREGGHAHFECKIEPVTDPNLKVEWFKNGRPITVGHRFRPIHDFGYVALDI 1494
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+D I EDSG YTCRAVNL+G E Q LQCR S I+T TQNE GLEQI YLED+S+Y R
Sbjct: 1495 VDLIAEDSGVYTCRAVNLIGSDETQVELQCRSSEQIVTVTQNEAGLEQIHYLEDRSRYSR 1554
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
E I+E+T QAP+FTTSLKN EIKE QRAHFECRLIPVSD +M+VEW+HNN+P+KSGSRF
Sbjct: 1555 REEIDESTKQAPVFTTSLKNIEIKENQRAHFECRLIPVSDPSMRVEWYHNNLPLKSGSRF 1614
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM LPED+G YTCRA NA+G+A+TS +VH+KKSI E+QH +L
Sbjct: 1615 TETNNFGFVALDIMSTLPEDAGTYTCRAFNAVGEAITSAVAVVHTKKSIYLESQHETALP 1674
Query: 293 RLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
RLQ LE G + QR S+ ++ VSQAPVFT P+RD+ VAENQA HFEARLIPVGD LKV W
Sbjct: 1675 RLQHLEDGSKRQRISVQDEFVSQAPVFTMPVRDVRVAENQAVHFEARLIPVGDPNLKVEW 1734
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNG PI+ASNR +TMHDFGYVALN KY PEDSGTYTCRAVNELG+AVTS A
Sbjct: 1735 LRNGQPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRAVNELGQAVTS--------A 1786
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITD 471
SL +V+ + I +
Sbjct: 1787 SL-----------------------------------------------IVQSKTAIQLE 1799
Query: 472 TQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
TQH + KI +LED ++R E ++ + PVF L + + EG++AH+ CR+ P
Sbjct: 1800 TQHEAAMHKIHQLEDHSKYQRREEEEYSVTTAPVFVTKLIGPNNLYEGQSAHYECRIEPY 1859
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
DP LKVEWF N KPL R T +DFG+ A+D+ V AED G Y C+ TN LGEAV +
Sbjct: 1860 PDPNLKVEWFHNGKPLSTGHRFRTTYDFGFAALDILTVYAEDSGEYTCRVTNNLGEAVNS 1919
Query: 592 ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY--EKPIFTQLLTGTSEIM 649
++K+ +++ + ETQH E L KIQ LE + + E Q+ E+P F + L +++
Sbjct: 1920 IALKVTSRSSIIHETQHEEALTKIQHLEDASRFQRKTEEDQFHAERPQFGRPLR-NAKVN 1978
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EG H + ++PV DPTM+ EW+ NG ++ G RF +DFG+V LDI D+G Y
Sbjct: 1979 EGSPVHLEATLIPVNDPTMKVEWYCNGRPIQTGHRFKTTYDFGFVALDILYAHAEDTGTY 2038
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAE 769
MCKA N GEAV++ ++ V + + ++L DA + ++++ E P K++++E
Sbjct: 2039 MCKAKNAVGEAVTTCAVNVTANKTLDLDTL--DAQRLEKIRQLESYAPPT--KVEVEEK- 2093
Query: 770 MNKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
Q P+F T L N L+E +H HLE
Sbjct: 2094 -------------GQKPIFLTPLSNLEHLKEGEHAHLEC 2119
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242022532|ref|XP_002431694.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517002|gb|EEB18956.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/758 (52%), Positives = 495/758 (65%), Gaps = 77/758 (10%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
TKPKS+EN+RE HAHFECKLEPVTDSNLKVEW+KNGRP+T+GHRFRPIHDFGYVALDII
Sbjct: 1400 TKPKSLENMREGRHAHFECKLEPVTDSNLKVEWYKNGRPITVGHRFRPIHDFGYVALDII 1459
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D I EDSG YTCRA N++G E +LQC GS+ ILTS+QNE G E+IQ+LEDKS+YQR
Sbjct: 1460 DLITEDSGIYTCRATNMLGMDETTCSLQCLGSSAILTSSQNEIGYEKIQHLEDKSRYQRA 1519
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT 233
E++EE T Q+P FTTSLKN +IKEGQRAHFECRLIPVSD TMKVEWFHNNVP+KSGSRFT
Sbjct: 1520 EFVEEVTKQSPTFTTSLKNIDIKEGQRAHFECRLIPVSDPTMKVEWFHNNVPLKSGSRFT 1579
Query: 234 ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
ETN+FGFVALDI+ PEDSG YTCRA+NALG+A+TS L S+KSI E+QH +L +
Sbjct: 1580 ETNSFGFVALDILHSQPEDSGTYTCRAINALGEALTSAQLNTSSRKSIYLESQHEGALDK 1639
Query: 294 LQQLE-QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL 352
L LE + R++R + E+ VSQ PVFT P++D+ VAENQAAHFEARLIPVGDS+LKV WL
Sbjct: 1640 LSYLEDESRHRRHTQQEEVVSQPPVFTMPVKDLKVAENQAAHFEARLIPVGDSRLKVEWL 1699
Query: 353 RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
RNGVPI ASNR++TMHDFGY ALN KY YPEDSGTYTCRAVN+LGEAVTS+TL +SKAS
Sbjct: 1700 RNGVPIAASNRIATMHDFGYAALNMKYVYPEDSGTYTCRAVNDLGEAVTSATLVCQSKAS 1759
Query: 413 LQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDT 472
L L++Q+E AL+K++ LE R +++E EE+ VT+ P F QLNGP L EG+
Sbjct: 1760 LLLESQHEEALEKLRALE-AGRPQQRETEEIIVTEAPRFVAQLNGPNNLYEGQSA----- 1813
Query: 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
E P D N + KPLQ
Sbjct: 1814 -------------HYECRIEPYPDSNMKVEWFCNGKPLQT-------------------- 1840
Query: 533 DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
R T +DFG+ ++D+ V ED G Y CKATN LG A ++
Sbjct: 1841 -----------------GHRYRTTYDFGFASLDVLGVYPEDSGEYTCKATNKLGTAQSST 1883
Query: 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPA--SPMPQEPERQYEKPIFTQLLTGTSEIME 650
++K+ ++ + ETQH ++KIQ LE + +E EKP F + L + E
Sbjct: 1884 TLKVTGRSSIISETQHEGAMQKIQYLEDDSRYKKTDREDVVTIEKPQFGRGLNNIDRLPE 1943
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G+SAH + + P+ D TM+ EWF NG +K G RF +DFGYV+LDI P DSG YM
Sbjct: 1944 GKSAHLEATLTPINDSTMKVEWFHNGKPIKQGHRFKTTYDFGYVSLDILYAYPEDSGTYM 2003
Query: 711 CKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAEM 770
CKA N GEAV+++S+ V SK+ + ++N DA + +LKE E
Sbjct: 2004 CKARNAVGEAVTTSSVTVDSKAGL------------------DLNTMDAERLRKLKELES 2045
Query: 771 NKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
+ P ++ PVFTT L N ++E +H HLE
Sbjct: 2046 YQRPTKAELEPERRKPVFTTALNNLENVKEGEHAHLEC 2083
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195126731|ref|XP_002007824.1| GI12167 [Drosophila mojavensis] gi|193919433|gb|EDW18300.1| GI12167 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/759 (51%), Positives = 490/759 (64%), Gaps = 77/759 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T PKS+ N RE GHAHFECK+EPVTD NLKVEWFKNGRP+T+GHRFRPIHDFGYVALDI
Sbjct: 1431 LTHPKSLTNTREGGHAHFECKIEPVTDPNLKVEWFKNGRPITVGHRFRPIHDFGYVALDI 1490
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ I EDSG YTCRAVNL+G E Q LQCR I+T TQNE GLEQI YLED+S+Y R
Sbjct: 1491 VGLIAEDSGIYTCRAVNLIGSDETQVELQCRSGEQIVTVTQNEAGLEQIHYLEDRSRYSR 1550
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
E ++ETT QAP+FTTSLKN EIKE QRAHFECRLIPVSD +M+VEW+HNN+P+KSGSRF
Sbjct: 1551 REEVDETTKQAPVFTTSLKNIEIKENQRAHFECRLIPVSDPSMRVEWYHNNMPLKSGSRF 1610
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM LPED+G YTCRA NA+G+A+TS +VH+KKSI E+QH +L
Sbjct: 1611 TETNNFGFVALDIMSTLPEDAGTYTCRAFNAVGEAITSAVAVVHTKKSIYLESQHETALP 1670
Query: 293 RLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
RLQ LE G + QR S+ ++ VSQAPVFT P+RD+ VAENQA HFEARLIPVGD KL V W
Sbjct: 1671 RLQHLEDGSKRQRVSVQDEFVSQAPVFTMPVRDVRVAENQAVHFEARLIPVGDPKLTVEW 1730
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNG PI+ASNR +TMHDFGYVALN KY PEDSGTYTCRAVNELG+AVTS A
Sbjct: 1731 LRNGQPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRAVNELGQAVTS--------A 1782
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITD 471
SL +V+ + I +
Sbjct: 1783 SL-----------------------------------------------IVQSKTAIQME 1795
Query: 472 TQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
TQH + KI +LED ++R E ++ P+F L + + EG++AH+ CR+ P
Sbjct: 1796 TQHEAAMHKIHQLEDHSKYQRREEEEYTVTTAPMFVTKLIGPNNLVEGQSAHYECRIEPY 1855
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
DP LKVEWF N KPL R T +DFG+ A+D+ V AED G Y C+ TN LGEAV++
Sbjct: 1856 PDPNLKVEWFHNGKPLSTGHRFRTTYDFGFAALDILTVYAEDSGEYTCRVTNNLGEAVSS 1915
Query: 592 ASMKIKTKAGLQLETQHPEGLKKIQELEQPA--SPMPQEPERQYEKPIFTQLLTGTSEIM 649
++ + T++ + ETQH E L KIQ LE + P+E + E+P F + L +++
Sbjct: 1916 IALNVTTRSSIIHETQHEEALHKIQHLEDTSRFQRKPEEDQFHAERPQFGRPLR-NAKVN 1974
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EG H + ++PV DPTMR EW+ NG ++ G RF +DFG+V LDI D+G Y
Sbjct: 1975 EGTPVHLEATLIPVNDPTMRVEWYCNGRPIQTGHRFKTTYDFGFVALDILYAHAEDTGTY 2034
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAE 769
MCKA N GEAV++ ++ V + + ++L DA + ++++ E P +++ K
Sbjct: 2035 MCKAKNAVGEAVTTCAVNVTANKTLDLDTL--DAQRLEKIRQLESYAPPVKAEVEEK--- 2089
Query: 770 MNKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
Q P+F T L N L+E +H HLE
Sbjct: 2090 -------------GQKPIFLTPLSNLEHLKEGEHAHLEC 2115
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194746956|ref|XP_001955920.1| GF24936 [Drosophila ananassae] gi|190623202|gb|EDV38726.1| GF24936 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/759 (51%), Positives = 490/759 (64%), Gaps = 77/759 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T PKS+ N RE GHAHFECK+EPVTD NLKVEWFKNGRP+T+GHRFRPIHDFGYVALDI
Sbjct: 1425 LTHPKSLTNTREGGHAHFECKIEPVTDPNLKVEWFKNGRPITVGHRFRPIHDFGYVALDI 1484
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ I EDSG YTCRAVNL+G E Q LQCR I+T TQNE GLEQI YLED+S+Y R
Sbjct: 1485 VQLIAEDSGIYTCRAVNLIGSDETQVELQCRSGEQIVTVTQNEAGLEQIHYLEDRSRYSR 1544
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
E I+E+T QAP+FTTSLKN EIKE QRAHFECRLIPVSD +M+VEW+HNN+P+KSGSRF
Sbjct: 1545 REEIDESTKQAPVFTTSLKNIEIKENQRAHFECRLIPVSDPSMRVEWYHNNLPLKSGSRF 1604
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM LPED+G YTCRA NA+G+A+TS +VH+KKSI E+QH +L
Sbjct: 1605 TETNNFGFVALDIMATLPEDAGTYTCRAYNAVGEAITSAVAVVHTKKSIYLESQHETALP 1664
Query: 293 RLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
RLQ LE G + QR S+ E+ VSQAPVFT P+RD+ VAENQA HFEARLIPVGD LKV W
Sbjct: 1665 RLQHLEDGSKRQRISVQEEFVSQAPVFTMPVRDVRVAENQAVHFEARLIPVGDPNLKVEW 1724
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNG PI+ASNR +TMHDFGYVALN KY PEDSGTYTCRAVNELG+AVTS A
Sbjct: 1725 LRNGQPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRAVNELGQAVTS--------A 1776
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITD 471
SL +V+ + I +
Sbjct: 1777 SL-----------------------------------------------IVQSKTAIQLE 1789
Query: 472 TQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
TQH + KI +LED ++R E ++ PVF L ++ EG++AH+ CR+ P
Sbjct: 1790 TQHEAAMHKIHQLEDHSKYQRREEEEYTVTTAPVFVTKLIGPSSLFEGQSAHYECRIEPY 1849
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
DP LKVEWF N KPL R T +DFG+ A+D+ V AED G Y C+ TN LGEAV +
Sbjct: 1850 PDPNLKVEWFHNGKPLSTGHRFRTTYDFGFAALDILTVYAEDSGEYTCRVTNNLGEAVNS 1909
Query: 592 ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY--EKPIFTQLLTGTSEIM 649
+ + +++ + ETQH E L KIQ LE + + E Q+ E+P F + L +++
Sbjct: 1910 IVLNVTSRSSIIHETQHEEALTKIQHLEDTSRFQRKTDEEQFHAERPQFGRPLR-NAKVN 1968
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EG H + ++PV DPTM+ EW+ NG ++ G RF +DFG+V LDI D+G Y
Sbjct: 1969 EGTPVHLEATLIPVNDPTMKVEWYCNGRPIQTGHRFKTTYDFGFVALDILYAHAEDTGTY 2028
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAE 769
MCKA N GEAV++ ++ V + + ++L DA + ++++ E P K++++E
Sbjct: 2029 MCKAKNAVGEAVTTCAVNVTANKTLDLDTL--DAQRLEKIRQLESYAPPT--KVEVEEK- 2083
Query: 770 MNKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
Q P+F T L N L+E +H HLE
Sbjct: 2084 -------------GQKPIFLTPLSNLEHLKEGEHAHLEC 2109
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285443|ref|XP_001687892.1| AGAP007563-PA [Anopheles gambiae str. PEST] gi|157019994|gb|EDO64541.1| AGAP007563-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/758 (51%), Positives = 496/758 (65%), Gaps = 77/758 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+TKPK+I+ +E GHAHFECKLEPVTD NLKVEW+KNG P+T+GHRFRPIHDFGYVALDI
Sbjct: 1529 LTKPKNIDRAQEGGHAHFECKLEPVTDPNLKVEWYKNGMPITVGHRFRPIHDFGYVALDI 1588
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
ID I ED+GTY CRAVNLVG E+ L CRGS ILT+TQNE GLEQIQYLE+K++ QR
Sbjct: 1589 IDLIAEDTGTYMCRAVNLVGVDEIAVQLSCRGSQQILTNTQNEMGLEQIQYLEEKTRQQR 1648
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
+Y++E TTQAP FTTSLK+ EIKEGQRAHFECRLIPVSD T++VEW+HN P+K+GSRF
Sbjct: 1649 SDYLDEMTTQAPTFTTSLKHIEIKEGQRAHFECRLIPVSDPTLRVEWYHNEAPVKTGSRF 1708
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM CL +DSG YTCRAVNALG+AVTS +VH++KSI +E+QH +L+
Sbjct: 1709 TETNNFGFVALDIMGCLADDSGTYTCRAVNALGEAVTSATCVVHTRKSIYSESQHEHALT 1768
Query: 293 RLQQLE-QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
L+ LE RYQR + +++ ++QAPVFT P++D+ VAENQA HFEARL+PVGD K++V W
Sbjct: 1769 SLRYLEDNSRYQRDTEVDEVITQAPVFTLPVKDVKVAENQAVHFEARLVPVGDPKMRVEW 1828
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNGVPI+ASNR +TMHDFGYVALN KY PEDSGTYTCRA NELG+AVT
Sbjct: 1829 LRNGVPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRATNELGQAVT---------- 1878
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITD 471
S +L Q++A+L +LE
Sbjct: 1879 SAKLVVQSKASL----DLE----------------------------------------- 1893
Query: 472 TQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
TQ+ LEKI +LED +R E +D A P FT L + EG++AH+ CR+ P
Sbjct: 1894 TQNESALEKIHQLEDAIRFQRREEEDVAVTVPPKFTTKLHGPTNLVEGQSAHYECRIEPY 1953
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
D +LKVEWF N +PL R T +DFG+ A+D+ V AED G Y C+ATN LG ++
Sbjct: 1954 PDSSLKVEWFHNGQPLTTGHRFRTTYDFGFAALDVLTVYAEDSGEYTCRATNHLGSETSS 2013
Query: 592 ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY--EKPIFTQLLTGTSEIM 649
++ + KAG+ ETQH L+KIQ LE A + + Y EKP F + L S +
Sbjct: 2014 IALNVTPKAGIVRETQHEGALEKIQYLECDARFGRKGEDEMYVAEKPAFGRPLKNAS-VG 2072
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EG H + + PV DPTM+ EW+ NG ++ G RF +DFG+V LDI D+G Y
Sbjct: 2073 EGLPVHLEATLTPVNDPTMKVEWYCNGRPIQQGHRFKTTYDFGFVALDILYAHAEDTGTY 2132
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAE 769
MCKA N GEAV++ ++KV + + + E+L +KI KE E +++K Q +E E
Sbjct: 2133 MCKAKNAIGEAVTTCAVKVTANAGLYLETLDEQRLQKI--KELE-----SYQKPQTQEVE 2185
Query: 770 MNKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLE 807
K Q PVF T L + L+E + HLE
Sbjct: 2186 PAK-----------QKPVFLTPLTSLENLKEGDYAHLE 2212
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170042390|ref|XP_001848911.1| titin [Culex quinquefasciatus] gi|167865871|gb|EDS29254.1| titin [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/744 (51%), Positives = 496/744 (66%), Gaps = 77/744 (10%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
H E L PV D +KVEW+ NGRP+ GHRF+ +DFG+VALDI+ ED+GTY C+A
Sbjct: 2024 VHLEATLTPVNDPTMKVEWYCNGRPIQQGHRFKTTYDFGFVALDILYAHAEDTGTYMCKA 2083
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
N VG A ++ +AG+ T +E L++I+ LE K Q E E Q P+F
Sbjct: 2084 KNAVGEAVTTCAVKVTANAGLYLETLDEQRLQKIKELESYQKPQTPEV--EPAKQKPVFL 2141
Query: 188 TSLKNCE-IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIM 246
T L N E +KEG AH ECR+ P++D +K+EWF N I++G RF T++FG+VALDI+
Sbjct: 2142 TPLTNLENLKEGDYAHLECRVEPINDPNLKIEWFINGKAIRAGHRFRTTHDFGYVALDIL 2201
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE-QGRYQRT 305
EDSG Y C+A N +G+AV++ N+ V +K+SI ++QH + L ++Q+LE Q R R
Sbjct: 2202 YVYGEDSGTYMCKATNMVGEAVSTCNIRVVNKRSIIFDSQHPDGLEKIQKLEAQVRPSRL 2261
Query: 306 SIIEDTVSQAPVFTQPMRDI-HVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV 364
+ E V AP F +R V E Q AHFEA++ P+ D L++ + NG P+Q+++R
Sbjct: 2262 ELQEPDVI-APRFVTELRGTTEVQEGQTAHFEAQVEPIHDPNLRIEFYHNGKPLQSASRF 2320
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
DFGYVAL+ ++ ED+G Y+ +A+N G+ K+S+ +
Sbjct: 2321 HITFDFGYVALDIQHCVAEDAGEYSVKAINAKGQC----------KSSINMK-------- 2362
Query: 425 KIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKL 484
V +G+II++TQHP+GL+KI++L
Sbjct: 2363 -------------------------------------VTAKGSIISETQHPEGLDKIKQL 2385
Query: 485 EDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE 544
E P KRPE+ D TKQRPVFT+PLQN+D V EG+ AHF CRLIPVGDP L+VEWFRNE
Sbjct: 2386 EGAAPFKRPEIQDAVTKQRPVFTQPLQNLDFVAEGQTAHFECRLIPVGDPNLRVEWFRNE 2445
Query: 545 KPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQL 604
KPLEDSSRI+ +HDFGYV+MDLSHVR EDEG+Y+C+A N LGEAVTTASM+I+TKA +Q+
Sbjct: 2446 KPLEDSSRISKQHDFGYVSMDLSHVREEDEGVYMCRAINPLGEAVTTASMRIRTKASIQM 2505
Query: 605 ETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG 664
++QHPEG+KKI +LEQP +P P+E E +EKPIFTQLLTG SE+ EGQ AH++ RVVPVG
Sbjct: 2506 DSQHPEGMKKIIQLEQPHAPRPEEQEAGFEKPIFTQLLTGPSELWEGQHAHFEARVVPVG 2565
Query: 665 DPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724
D +M++EW+VNGVELK+GSRFH HDFG+VTLDI V DSGVYMCKAIN+AGEAVSST
Sbjct: 2566 DASMKYEWYVNGVELKLGSRFHTTHDFGFVTLDINSAVAEDSGVYMCKAINKAGEAVSST 2625
Query: 725 SLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAEMNKVPEMFIDTRPQQ 784
+KVKSKS I E L P+AW+KIQ LKEA MN+VP+MF+DT PQQ
Sbjct: 2626 MMKVKSKSSIAGEPLLPEAWEKIQ----------------LKEAAMNRVPDMFVDTTPQQ 2669
Query: 785 APVFTTHLENQHQLQEAQHVHLEA 808
APVFTTHLE+ +LQE QHV+LEA
Sbjct: 2670 APVFTTHLESHDKLQENQHVYLEA 2693
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195336808|ref|XP_002035025.1| GM14142 [Drosophila sechellia] gi|194128118|gb|EDW50161.1| GM14142 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/759 (50%), Positives = 486/759 (64%), Gaps = 77/759 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T PKS+ N RE GHAHFECK+EPVTD NLKVEWFKNGRP+T+GHRFRPIHDFGYVALDI
Sbjct: 1427 LTHPKSLTNTREGGHAHFECKIEPVTDPNLKVEWFKNGRPITVGHRFRPIHDFGYVALDI 1486
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ I EDSG YTCRAVNL+G E Q LQCR I+T TQNE GLEQI YLED+S+Y R
Sbjct: 1487 VHLIAEDSGVYTCRAVNLIGSDETQVELQCRSGEQIVTVTQNEAGLEQIHYLEDRSRYTR 1546
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
E I+E+T QAP+FTTSLKN EIKE QRAHFECRLIPVSD +M+VEW+HNN+P+KSGSRF
Sbjct: 1547 REEIDESTKQAPVFTTSLKNVEIKENQRAHFECRLIPVSDPSMRVEWYHNNLPLKSGSRF 1606
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM LPED+G YTCRA NA+G+A+TS +VH+KKSI E+QH +L
Sbjct: 1607 TETNNFGFVALDIMSTLPEDAGTYTCRAYNAVGEAITSAVAVVHTKKSIYLESQHETALP 1666
Query: 293 RLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
RLQ LE G + QR S+ ++ VSQAPVFT P+RD+ VAENQA HFEARLIPVGD KLKV W
Sbjct: 1667 RLQHLEDGSKRQRISVQDEFVSQAPVFTMPVRDVRVAENQAVHFEARLIPVGDPKLKVEW 1726
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNG PI+ASNR +TMHDFGYVALN KY PEDSGTYTCRAVNELG+AVTS A
Sbjct: 1727 LRNGQPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRAVNELGQAVTS--------A 1778
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITD 471
SL +V+ + +I +
Sbjct: 1779 SL-----------------------------------------------IVQSKTSIQLE 1791
Query: 472 TQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
TQH + KI +LED ++R E ++ PVF L + EG++AH+ CR+ P
Sbjct: 1792 TQHEAAMHKIHQLEDHSRYQRREEEEYTVTTAPVFVTKLIGPSKLVEGQSAHYECRIEPY 1851
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
DP LKVEWF N KPL R T +DFG+ A+D+ V AED G Y C+ TN LGEA+ +
Sbjct: 1852 PDPNLKVEWFHNGKPLSTGHRFRTTYDFGFAALDILTVYAEDSGEYTCRVTNNLGEAINS 1911
Query: 592 ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY--EKPIFTQLLTGTSEIM 649
+ + +++ + ETQH E L KIQ LE + + E Q+ E+P F + L +++
Sbjct: 1912 IVLNVTSRSSIIHETQHEEALTKIQHLEDSSRFQRKTDEEQFHAERPQFGRPLR-NAKVN 1970
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EG H + ++PV DPTM+ EW+ NG ++ G RF +DFG+V LDI D+G Y
Sbjct: 1971 EGAPVHLEATLIPVNDPTMKVEWYCNGRPIQTGHRFKTTYDFGFVALDILYAHAEDTGTY 2030
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKEAEMNKPDAWKKIQLKEAE 769
MCKA N GEAV++ ++ V + K +++ DA + ++++ E
Sbjct: 2031 MCKAKNAIGEAVTTCAVNVTAN------------------KTLDLDTLDAQRLEKIRQLE 2072
Query: 770 MNKVPEMFIDTRPQQAPVFTTHLENQHQLQEAQHVHLEA 808
P + Q P+F T L N L+E +H HLE
Sbjct: 2073 TYAPPPKPVVEEKGQKPIFLTPLSNLEHLKEGEHAHLEC 2111
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 808 | ||||||
| FB|FBgn0086906 | 18 | sls "sallimus" [Drosophila mel | 0.511 | 22.94 | 0.695 | 2.7e-267 | |
| WB|WBGene00004130 | 4488 | ketn-1 [Caenorhabditis elegans | 0.622 | 0.112 | 0.347 | 5.4e-120 | |
| UNIPROTKB|O97791 | 2000 | titin "Titin" [Oryctolagus cun | 0.292 | 0.118 | 0.334 | 2e-49 | |
| UNIPROTKB|F1PV45 | 35 | F1PV45 "Uncharacterized protei | 0.292 | 6.742 | 0.338 | 5.4e-45 | |
| MGI|MGI:98864 | 35 | Ttn "titin" [Mus musculus (tax | 0.292 | 6.742 | 0.330 | 3e-44 | |
| ZFIN|ZDB-GENE-030616-413 | 28 | ttnb "titin b" [Danio rerio (t | 0.295 | 8.535 | 0.339 | 3.2e-43 | |
| ZFIN|ZDB-GENE-030113-2 | 32 | ttna "titin a" [Danio rerio (t | 0.315 | 7.968 | 0.325 | 3.2e-43 | |
| UNIPROTKB|Q8WZ42 | 34 | TTN "Titin" [Homo sapiens (tax | 0.292 | 6.941 | 0.338 | 7.9e-42 | |
| UNIPROTKB|F1N757 | 34 | F1N757 "Uncharacterized protei | 0.292 | 6.941 | 0.334 | 2.1e-40 | |
| WB|WBGene00006820 | 8081 | unc-89 [Caenorhabditis elegans | 0.497 | 0.049 | 0.263 | 4.3e-34 |
| FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1537 (546.1 bits), Expect = 2.7e-267, Sum P(3) = 2.7e-267
Identities = 288/414 (69%), Positives = 336/414 (81%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T PKS+ N RE GHAHFECK+EPVTD NLKVEWFKNGRP+T+GHRFRPIHDFGYVALDI
Sbjct: 1427 LTHPKSLTNTREGGHAHFECKIEPVTDPNLKVEWFKNGRPITVGHRFRPIHDFGYVALDI 1486
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ I EDSG YTCRAVNL+G E Q LQCR I+T TQNE GLEQI YLED+S+Y R
Sbjct: 1487 VHLIAEDSGVYTCRAVNLIGSDETQVELQCRSGEQIVTVTQNEAGLEQIHYLEDRSRYTR 1546
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
E I+E+T QAP+FTTSLKN EIKE QRAHFECRLIPVSD +M+VEW+HNN+P+KSGSRF
Sbjct: 1547 REEIDESTKQAPVFTTSLKNVEIKENQRAHFECRLIPVSDPSMRVEWYHNNLPLKSGSRF 1606
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
TETNNFGFVALDIM LPED+G YTCRA NA+G+A+TS +VH+KKSI E+QH +L
Sbjct: 1607 TETNNFGFVALDIMSTLPEDAGTYTCRAYNAVGEAITSAVAVVHTKKSIYLESQHETALP 1666
Query: 293 RLQQLEQG-RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
RLQ LE G + QR S+ ++ VSQAPVFT P+RD+ VAENQA HFEARLIPVGD KL V W
Sbjct: 1667 RLQHLEDGSKRQRISVQDEFVSQAPVFTMPVRDVRVAENQAVHFEARLIPVGDPKLTVEW 1726
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
LRNG PI+ASNR +TMHDFGYVALN KY PEDSGTYTCRAVNELG+AVTS++L V+SK
Sbjct: 1727 LRNGQPIEASNRTTTMHDFGYVALNMKYVNPEDSGTYTCRAVNELGQAVTSASLIVQSKT 1786
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKXXXXXXXTQQPSFTVQLNGPTELVEGE 465
S+QL+TQ+EAA+ KI LED SR++R+ T P F +L GP+ LVEG+
Sbjct: 1787 SIQLETQHEAAMHKIHQLEDHSRYQRREEEEYTVTTAPVFVTKLIGPSNLVEGQ 1840
|
|
| WB|WBGene00004130 ketn-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 5.4e-120, Sum P(3) = 5.4e-120
Identities = 179/515 (34%), Positives = 267/515 (51%)
Query: 16 YLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKP-KSIENLRERGHAHFECKL 74
Y S+ S WQ + V E + K +P SI+ + E AHF+ K+
Sbjct: 1957 YTDSQHPES--WQKIQVLEAPRAAAPEKPDAEHDAPQFIEPLDSIDRM-EFQSAHFQTKV 2013
Query: 75 EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFA 134
P TD NL+++WFK+G+P+ +RF+ DFGY++LDI T+PEDSG Y+ +A N G A
Sbjct: 2014 TPQTDPNLRIQWFKDGQPLMNSNRFKLTTDFGYISLDIAHTVPEDSGVYSVKASNAKGDA 2073
Query: 135 EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194
EVQA L G+A IL TQ+E ++IQ +E + GE + P F T L + +
Sbjct: 2074 EVQAQLTVTGNAVILGDTQHEQSWQKIQLIE--APRAPGEEEPDVKHGPPKFVTQLHSLD 2131
Query: 195 -IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ EGQ +HFE + IP SD V+W+ N P+ + SR N+FG V+LD+ L ED+
Sbjct: 2132 GVVEGQPSHFEAQFIPFSDPKTSVQWYLNGNPLSASSRRILRNDFGLVSLDLQYTLGEDA 2191
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
G Y+ N+ G+ TSG L ++ +I +TQH +S R+Q++E R E V
Sbjct: 2192 GEYSVVVKNSEGEDRTSGQLSCTTRAAILGDTQHEQSWQRIQEIEAPRAPGAEP-EGPVY 2250
Query: 314 QAPVFTQPMRDI-HVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
+ P F QP++ + + E A EARL+PV D L+V W N P+ SN +ST +DFG
Sbjct: 2251 EKPSFVQPLQSVGDLPEGSVALLEARLVPVNDPNLRVQWFYNDQPLMESNWISTSNDFGC 2310
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDT 432
V+L Y +G Y+C+A N+ G AVTS+ + V+ L LDT + A+LQKIQ LE
Sbjct: 2311 VSLRIAPVYARHTGVYSCKAWNDSGNAVTSANVGVQGSEGLLLDTSHPASLQKIQELEAI 2370
Query: 433 SRFKRKXXXXXXXTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKR 492
++ R ++P + + EG+ + P G +R LE +
Sbjct: 2371 DKYARLDAPEREY-EKPQWVQGFENYENVGEGQTVTLHGLVEPSGDPHLR-LEWLL-NGT 2427
Query: 493 PEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCR 527
P + N +Q F + I V + ++CR
Sbjct: 2428 PLRNANRFRQEYEFGNAILTIVHVLPHDSGVYTCR 2462
|
|
| UNIPROTKB|O97791 titin "Titin" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 2.0e-49, Sum P(3) = 2.0e-49
Identities = 83/248 (33%), Positives = 131/248 (52%)
Query: 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK 537
LE + E + ++ D +Q+P F K L ++ G AHF CRL P+GDPT+
Sbjct: 1624 LEPLHLRYGQEQWEEGDLYDKEKQQKPFFKKKLSSLRLKRFGP-AHFECRLTPIGDPTMV 1682
Query: 538 VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
VEW + KPLE ++R+ ++FGY ++D + D G+ C+ATN G T+A++ +K
Sbjct: 1683 VEWLHDGKPLEAANRLRMINEFGYCSLDYGVAYSRDSGVITCRATNKYGTDHTSATLIVK 1742
Query: 598 TKAGLQLETQHPEG---LKKIQELEQPASPMP----QEPERQYEKPIFTQLLTGTSEIME 650
+ L E+Q PEG L++I+ELE+ A +++ +KP L ++E
Sbjct: 1743 DEKSLVEESQLPEGRKGLQRIEELERMAHEGALTGVTADQKEKQKPDIV-LYPEPVRVLE 1801
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++A + CRV G P + W++NG ++ RF V++D G LDI C D+G
Sbjct: 1802 GETARFRCRVT--GYPQPKLNWYLNGQLIRKSKRFRVRYD-GIHYLDIVDCKSYDTGEVK 1858
Query: 711 CKAINRAG 718
A N G
Sbjct: 1859 VTAENPEG 1866
|
|
| UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 5.4e-45, Sum P(4) = 5.4e-45
Identities = 84/248 (33%), Positives = 131/248 (52%)
Query: 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK 537
LE + E + ++ D +Q+P F K L ++ G AHF CRL P+GDPT+
Sbjct: 1676 LEPLHLRYGQEQWEEGDLYDKEKQQKPFFKKKLTSLRLKRFGP-AHFECRLTPIGDPTMV 1734
Query: 538 VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
VEW + KPLE ++R+ ++FGY ++D + D GI C+ATN G T+A++ +K
Sbjct: 1735 VEWLHDGKPLEAANRLRMINEFGYCSLDYGVAYSRDSGIITCRATNKYGTDHTSATLIVK 1794
Query: 598 TKAGLQLETQHPEG---LKKIQELEQPASPMP----QEPERQYEKPIFTQLLTGTSEIME 650
+ L E+Q PEG L++I+ELE+ A +++ +KP L ++E
Sbjct: 1795 DEKSLVEESQLPEGREGLQRIEELERMAHEGALTGVTTDQKEKQKPDIV-LFPEPVRVLE 1853
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++A + CRV G P + W++NG ++ RF V++D G LDI C D+G
Sbjct: 1854 GETARFRCRVT--GYPQPKVNWYLNGQLIRKSKRFRVRYD-GIHYLDIVDCKSYDTGEVK 1910
Query: 711 CKAINRAG 718
A N G
Sbjct: 1911 VTAENPEG 1918
|
|
| MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 3.0e-44, Sum P(4) = 3.0e-44
Identities = 82/248 (33%), Positives = 131/248 (52%)
Query: 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK 537
LE + E + ++ D +Q+P F K L ++ G AHF CRL P+GDPT+
Sbjct: 1683 LEPLHLRYGQEQWEEGDLYDKEKQQKPFFKKKLTSLRLKRFGP-AHFECRLTPIGDPTMV 1741
Query: 538 VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
VEW + KPLE ++R+ ++FGY ++D + D G+ C+ATN G T+A++ +K
Sbjct: 1742 VEWLHDGKPLEAANRLRMINEFGYCSLDYGAAYSRDSGVITCRATNKYGTDHTSATLIVK 1801
Query: 598 TKAGLQLETQHPEG---LKKIQELEQPASPMP----QEPERQYEKPIFTQLLTGTSEIME 650
+ L E+Q P+G L++I+ELE+ A +++ +KP L ++E
Sbjct: 1802 DEKSLVEESQLPDGKKGLQRIEELERMAHEGALTGVTTDQKEKQKPDIV-LFPEPVRVLE 1860
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++A + CRV G P + W++NG ++ RF V++D G LDI C D+G
Sbjct: 1861 GETARFRCRVT--GYPQPKVNWYLNGQLIRKSKRFRVRYD-GIHYLDIVDCKSYDTGEVK 1917
Query: 711 CKAINRAG 718
A N G
Sbjct: 1918 VTAENPEG 1925
|
|
| ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 3.2e-43, Sum P(3) = 3.2e-43
Identities = 89/262 (33%), Positives = 136/262 (51%)
Query: 475 PKGLEKIRKLE--DTEP-HKR--------PEVDDNATKQRPVFTKPLQNIDAVEEGKNAH 523
PKG K +++ + EP H R ++ D +Q+P F K L ++ G AH
Sbjct: 968 PKGTYKAKEIAAPELEPLHLRYGQEQWEDGDLYDKEKQQKPHFKKKLTSVRLKRFGP-AH 1026
Query: 524 FSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583
F CRL P+GDPT+ VEW + KPL ++R+ ++FGY ++D + D G+ C+ATN
Sbjct: 1027 FECRLTPIGDPTMIVEWLHDGKPLAAANRLRMVNEFGYCSLDYEAAYSRDSGVITCRATN 1086
Query: 584 ALGEAVTTASMKIKTKAGLQLETQHPEGLK--KIQELEQPA-----SPMPQEPERQYEKP 636
G T+A++ +K + L ETQ PEG + +I E+E+ A S + + + KP
Sbjct: 1087 KFGVDQTSATLIVKDEKSLVEETQLPEGRRGQRIDEIERIAHEGGPSGVTGDDNLEKTKP 1146
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTL 696
LL +MEG++A + CRV G PT + W++NG+ ++ RF +Q D G L
Sbjct: 1147 EIV-LLPEPVRVMEGETAKFRCRVT--GYPTPKVNWYLNGLLIRKSKRFRLQFD-GIHYL 1202
Query: 697 DITKCVPADSGVYMCKAINRAG 718
+I DSG A N G
Sbjct: 1203 EIVDTKSYDSGDVKVSAENPEG 1224
|
|
| ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 3.2e-43, Sum P(5) = 3.2e-43
Identities = 87/267 (32%), Positives = 137/267 (51%)
Query: 461 LVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGK 520
L+ +GT P +E + E + ++ D +Q+P F K L ++ G
Sbjct: 1432 LIIPKGTYKAKDVAPPEIEPLHLRYGQEQWEEGDLYDKEKQQKPHFKKKLTSVRMKRFGP 1491
Query: 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580
HF CRL P+GDPT+ VEW + KPLE ++R+ ++FGY ++D + D G+ C+
Sbjct: 1492 -VHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMINEFGYCSLDYEVAYSRDSGVITCR 1550
Query: 581 ATNALGEAVTTASMKIKTKAGLQLETQHPEGLK--KIQELEQPA-----SPMPQEPERQY 633
ATN G T+A++ +K + L ++Q PEG K ++ E+E+ A S + + +
Sbjct: 1551 ATNKFGADQTSATLIVKDEKSLVEDSQLPEGRKVQRMDEMERIAHEGGPSGVTGDDMSEK 1610
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
KP LL + EG++A Y CRV G PT + W++NG+ ++ RF + +D G
Sbjct: 1611 SKPEIV-LLPEPIRVFEGETAKYRCRVT--GYPTPKVNWYLNGLLIRKSKRFRLHYD-GI 1666
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEA 720
L+IT C DSG A N G A
Sbjct: 1667 HYLEITDCKSYDSGDVRVLAENPEGTA 1693
|
|
| UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.9e-42, Sum P(4) = 7.9e-42
Identities = 84/248 (33%), Positives = 131/248 (52%)
Query: 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK 537
LE + E + ++ D +Q+P F K L ++ G AHF CRL P+GDPT+
Sbjct: 1677 LEPLHLRYGQEQWEEGDLYDKEKQQKPFFKKKLTSLRLKRFGP-AHFECRLTPIGDPTMV 1735
Query: 538 VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
VEW + KPLE ++R+ ++FGY ++D + D GI C+ATN G T+A++ +K
Sbjct: 1736 VEWLHDGKPLEAANRLRMINEFGYCSLDYGVAYSRDSGIITCRATNKYGTDHTSATLIVK 1795
Query: 598 TKAGLQLETQHPEG---LKKIQELEQPASPMP----QEPERQYEKPIFTQLLTGTSEIME 650
+ L E+Q PEG L++I+ELE+ A +++ +KP L ++E
Sbjct: 1796 DEKSLVEESQLPEGRKGLQRIEELERMAHEGALTGVTTDQKEKQKPDIV-LYPEPVRVLE 1854
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++A + CRV G P + W++NG ++ RF V++D G LDI C D+G
Sbjct: 1855 GETARFRCRVT--GYPQPKVNWYLNGQLIRKSKRFRVRYD-GIHYLDIVDCKSYDTGEVK 1911
Query: 711 CKAINRAG 718
A N G
Sbjct: 1912 VTAENPEG 1919
|
|
| UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 2.1e-40, Sum P(5) = 2.1e-40
Identities = 83/248 (33%), Positives = 132/248 (53%)
Query: 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK 537
LE + E + ++ D +Q+P F K L ++ G AHF CRL P+GDPT+
Sbjct: 1664 LEPLHLRYGQEQWEEGDLYDKEKQQKPFFKKKLTSLRLKRFGP-AHFECRLTPIGDPTMV 1722
Query: 538 VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
VEW + KPLE ++R+ ++FGY ++D + + D G+ C+ATN G T+A++ +K
Sbjct: 1723 VEWLHDGKPLEAANRLRMINEFGYCSLDYAVAYSRDSGVITCRATNKYGTDHTSATLIVK 1782
Query: 598 TKAGLQLETQHPEG---LKKIQELEQPASPMP----QEPERQYEKPIFTQLLTGTSEIME 650
+ L E+Q PEG L++I+ELE+ A +++ +KP L ++E
Sbjct: 1783 DEKSLVEESQLPEGRKGLQRIEELERMAHEGALTGVTTDQKEKQKPDIV-LFPEPVRVLE 1841
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++A + CRV G P + W++NG ++ RF V++D G LDI C D+G
Sbjct: 1842 GETARFRCRVT--GYPQPKVNWYLNGQLIRKSKRFRVRYD-GIHYLDIVDCKSYDTGEVK 1898
Query: 711 CKAINRAG 718
A N G
Sbjct: 1899 VTAENPEG 1906
|
|
| WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.3e-34, Sum P(5) = 4.3e-34
Identities = 115/437 (26%), Positives = 192/437 (43%)
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
II D++ P FTQ +R + V E + + ++ +G V W ++ PI N
Sbjct: 3475 IIRDSIP--PEFTQKLRPLEVREQET--LDLKVTVIGTPVPNVEWFKDDKPINIDNSHIF 3530
Query: 367 MHD--FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
D G+ L K ED G YTC+A NE GEA T++ + V+ + L Q +
Sbjct: 3531 AKDEGSGHHTLTIKQARGEDVGVYTCKATNEAGEAKTTANMAVQEEIEAPLFVQGLKPYE 3590
Query: 425 KIQN--LEDTSRFKRKXXXXXXXTQQPSFTVQLNGPTELVEGEGT------IITDTQHP- 475
Q E R + K + + ++ ++E +G +I DT +
Sbjct: 3591 VEQGKPAELVVRVEGKPEPEVKWFKD-GVPIAIDNQ-HVIEKKGENGSHTLVIKDTNNAD 3648
Query: 476 ------KGLEKIRKLEDTEPHKRPEVD---DNATKQRPVFTKPLQNIDAVEEGKNAHFSC 526
+ K K E K P+ A + +P+F +PL+ AVE G C
Sbjct: 3649 FGKYTCQATNKAGKDETVGELKIPKYSFEKQTAEEVKPLFIEPLKETFAVE-GDTVVLEC 3707
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFGYVAMDLSHVRAEDEGIYICKATNAL 585
++ P +K +F+N++P+E + + + G + + + + + ED G Y C+A N
Sbjct: 3708 KVNKESHPQIK--FFKNDQPVEIGQHMQLEVLEDGNIKLTIQNAKKEDVGAYRCEAVNVA 3765
Query: 586 GEAVTTASMKIKTKAGLQLETQHPEG-LKKIQELEQPASPMPQEPERQYEKPIFTQLLTG 644
G+A T A +KI+ A ++ G L++I + E + + P F +LL
Sbjct: 3766 GKANTNADLKIQFAAKVEEHVTDESGQLEEIGQFETVGDTASSKTDTGRGAPEFVELLRS 3825
Query: 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFGYVTLDITKCVP 703
+ + E Q A C+V G+P + +W G E++M +R +H D G +TL
Sbjct: 3826 CT-VTEKQQAILKCKVK--GEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTLTFDNVTQ 3882
Query: 704 ADSGVYMCKAINRAGEA 720
AD+G Y C+A N G A
Sbjct: 3883 ADAGEYRCEAENEYGSA 3899
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9I7U4 | TITIN_DROME | No assigned EC number | 0.7060 | 0.5123 | 0.0228 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 808 | |||
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 6e-19 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 8e-19 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 5e-18 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-16 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 8e-12 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-11 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-11 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-10 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-10 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 5e-10 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 5e-10 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 2e-09 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 3e-09 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-08 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-07 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-07 | |
| pfam06582 | 29 | pfam06582, DUF1136, Repeat of unknown function (DU | 2e-07 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 3e-07 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 6e-07 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 6e-07 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 6e-07 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 7e-07 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 7e-07 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 9e-07 | |
| pfam06582 | 29 | pfam06582, DUF1136, Repeat of unknown function (DU | 9e-07 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-06 | |
| pfam06582 | 29 | pfam06582, DUF1136, Repeat of unknown function (DU | 2e-06 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 2e-06 | |
| pfam06582 | 29 | pfam06582, DUF1136, Repeat of unknown function (DU | 5e-06 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 9e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 9e-06 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 1e-05 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 1e-05 | |
| cd05895 | 76 | cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)- | 2e-05 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 2e-05 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 3e-05 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 4e-05 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 6e-05 | |
| cd05867 | 76 | cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I | 8e-05 | |
| cd05891 | 92 | cd05891, Ig_M-protein_C, C-terminal immunoglobulin | 8e-05 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 1e-04 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 2e-04 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 2e-04 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 2e-04 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 2e-04 | |
| cd05743 | 78 | cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)- | 2e-04 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 2e-04 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 3e-04 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 3e-04 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 5e-04 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 6e-04 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 7e-04 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 8e-04 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 8e-04 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 9e-04 | |
| cd05891 | 92 | cd05891, Ig_M-protein_C, C-terminal immunoglobulin | 0.001 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.001 | |
| cd05743 | 78 | cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)- | 0.001 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 0.001 | |
| cd05850 | 94 | cd05850, Ig1_Contactin-2, First Ig domain of conta | 0.001 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 0.002 | |
| cd05743 | 78 | cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)- | 0.002 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 0.002 | |
| cd05754 | 85 | cd05754, Ig3_Perlecan_like, Third immunoglobulin ( | 0.002 | |
| cd04979 | 89 | cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like | 0.002 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.003 | |
| cd05881 | 95 | cd05881, Ig1_Necl-2, First (N-terminal) immunoglob | 0.003 | |
| cd05894 | 86 | cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma | 0.003 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 0.003 | |
| cd05856 | 82 | cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I | 0.003 | |
| cd05757 | 92 | cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig) | 0.003 | |
| pfam06582 | 29 | pfam06582, DUF1136, Repeat of unknown function (DU | 0.004 | |
| cd05895 | 76 | cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)- | 0.004 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 0.004 | |
| cd05852 | 73 | cd05852, Ig5_Contactin-1, Fifth Ig domain of conta | 0.004 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-19
Identities = 39/93 (41%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P FTQ E+ EG+SA + C V GDP WF +G L+ RF V ++ G T
Sbjct: 1 PKFTQKPKDV-EVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L I+ P D G Y C A N AGEA +S L V
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 8e-19
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P FT+ +++ V+EG++A F+C + GDP V WF++ +PL S R ++ G
Sbjct: 1 PKFTQKPKDV-EVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ +S+V+ +DEG Y C ATN+ GEA +A + +
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-18
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P FTQ +D+ V E ++A F + GD V+W ++G P+++S+R ++ G L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL 58
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
P+D G YTC A N GEA S+ L V
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-16
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P FT K+ E++EG+ A F C + D V WF + P++S RF T G L
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL 58
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
I P+D G YTC A N+ G+A S L V
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 8e-12
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
KPK +E ++E A F C VT D + V WFK+G+P+ RF+ ++ G L
Sbjct: 4 TQKPKDVE-VQEGESARFTCT---VTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLT 59
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
I + P+D G YTC A N G AE A L
Sbjct: 60 ISNVQPDDEGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-11
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRN-EKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
V+EG++ SC G P +V W++ K L +S R + + +S+V ED
Sbjct: 6 VKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 575 GIYICKATNALGEAVTTA 592
G Y C ATN+ G A +
Sbjct: 64 GTYTCAATNSSGSASSGT 81
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-11
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRN-EKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
V+EG++ SC G P +V W++ K L +S R + + +S+V ED
Sbjct: 6 VKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDS 63
Query: 575 GIYICKATNALGEAVTTA 592
G Y C ATN+ G A +
Sbjct: 64 GTYTCAATNSSGSASSGT 81
|
Length = 85 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-10
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNN-VPIKSGSRFTETNNFGFVALDIMQCLPED 252
+KEG+ C +V W+ + RF+ + + L I PED
Sbjct: 5 TVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 253 SGVYTCRAVNALGQAVTSGNLLV 275
SG YTC A N+ G A + L V
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-10
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNN-VPIKSGSRFTETNNFGFVALDIMQCLPED 252
+KEG+ C +V W+ + RF+ + + L I PED
Sbjct: 5 TVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 253 SGVYTCRAVNALGQAVTSGNLLV 275
SG YTC A N+ G A + L V
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-10
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE-LKMGSRFHVQHDFGYVTLDITKCVPAD 705
+ EG+S C G P W+ G + L RF V TL I+ P D
Sbjct: 5 TVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 706 SGVYMCKAINRAGEAVSSTSLKV 728
SG Y C A N +G A S T+L V
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-10
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE-LKMGSRFHVQHDFGYVTLDITKCVPAD 705
+ EG+S C G P W+ G + L RF V TL I+ P D
Sbjct: 5 TVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPED 62
Query: 706 SGVYMCKAINRAGEAVSSTSLKV 728
SG Y C A N +G A S T+L V
Sbjct: 63 SGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
EG++ +C P + W ++ KPL +S+R + + V ED G+Y
Sbjct: 1 EGQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLY 54
Query: 578 ICKATNALG 586
C A N+ G
Sbjct: 55 TCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-09
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVY 256
EGQ C + W + P+ +RF + + L I EDSG+Y
Sbjct: 1 EGQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLY 54
Query: 257 TCRAVNALG 265
TC A N+ G
Sbjct: 55 TCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 2e-08
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD----LSHVRAEDEGIY 577
+C G P + W +N KPL S + G + +S+V ED G Y
Sbjct: 1 VTLTCLA--SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 578 ICKATNALGEAVTTAS 593
C A+N+ G + +
Sbjct: 59 TCVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 323 RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG-VPIQASNRVSTMHDFGYVALNFKYTY 381
+ V E ++ G +VTW + G + S R S L
Sbjct: 2 PSVTVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59
Query: 382 PEDSGTYTCRAVNELGEAVTSSTLFV 407
PEDSGTYTC A N G A + +TL V
Sbjct: 60 PEDSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 323 RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG-VPIQASNRVSTMHDFGYVALNFKYTY 381
+ V E ++ G +VTW + G + S R S L
Sbjct: 2 PSVTVKEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59
Query: 382 PEDSGTYTCRAVNELGEAVTSSTLFV 407
PEDSGTYTC A N G A + +TL V
Sbjct: 60 PEDSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 468 IITDTQHPKGLEKIRKLEDTEPHKRPEV 495
II DTQHP+ LEKI++LED ++RPE
Sbjct: 1 IILDTQHPESLEKIQELEDPSRYQRPEE 28
|
This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with pfam00047. Length = 29 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
+TWL++G P+ SNR L K EDSG YTC A N G
Sbjct: 19 ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-07
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
C E N + W K+G+P+ +RF L I EDSG YTC A N
Sbjct: 7 LTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAEN 60
Query: 130 LVG 132
G
Sbjct: 61 SAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 47.5 bits (112), Expect = 6e-07
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVT----IGHRFRPIHDFGYVALDIIDTIPEDSGTY 123
C + W KNG+P+ R G L I + EDSGTY
Sbjct: 1 VTLTCLASG--PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 124 TCRAVNLVGFAEVQAT 139
TC A N G T
Sbjct: 59 TCVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-07
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 530 PVGDPTLKVEWFRNEKPL-EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588
P G P V W ++ +PL D+ R+ D G + + + R DEG Y C ATN +GE
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDD-GNLLI--AEARKSDEGTYKCVATNMVGER 77
Query: 589 VTTA 592
+ A
Sbjct: 78 ESAA 81
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-07
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 70 FECKLEPVTDSNLKVEWFKNG-RPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
C+ +V W+K G + + RF L I + PEDSGTYTC A
Sbjct: 14 LSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71
Query: 129 NLVGFAEVQATLQ 141
N G A TL
Sbjct: 72 NSSGSASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-07
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 70 FECKLEPVTDSNLKVEWFKNG-RPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
C+ +V W+K G + + RF L I + PEDSGTYTC A
Sbjct: 14 LSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAAT 71
Query: 129 NLVGFAEVQATLQ 141
N G A TL
Sbjct: 72 NSSGSASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 46.7 bits (110), Expect = 9e-07
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA----LNFKYTYPEDSGTYTCRAVNELGE 398
G +TWL+NG P+ +S G + L EDSGTYTC A N G
Sbjct: 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68
Query: 399 AVTS 402
S
Sbjct: 69 VSAS 72
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136) | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 9e-07
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 413 LQLDTQNEAALQKIQNLEDTSRFKRKEE 440
+ LDTQ+ +L+KIQ LED SR++R EE
Sbjct: 1 IILDTQHPESLEKIQELEDPSRYQRPEE 28
|
This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with pfam00047. Length = 29 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 2e-06
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 658 CRVVPVGDPTMRFEWFVNGVELK----MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713
C G P W NG L R G TL I+ DSG Y C A
Sbjct: 5 CLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA 62
Query: 714 INRAGEAVSSTS 725
N AG +S +
Sbjct: 63 SNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 148 ILTSTQNETGLEQIQYLEDKSKYQRGE 174
I+ TQ+ LE+IQ LED S+YQR E
Sbjct: 1 IILDTQHPESLEKIQELEDPSRYQRPE 27
|
This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with pfam00047. Length = 29 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICK 580
F C + GDP V W + + L + I ++ + +V A DEG Y C+
Sbjct: 1 VEFQCEV--GGDPVPTVLWRKEDGELPKGRAEILDDK-----SLKIRNVTAGDEGSYTCE 53
Query: 581 ATNALGEAVTTASMKI 596
A N +G+ +AS+ +
Sbjct: 54 AENMVGKIEASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 602 LQLETQHPEGLKKIQELEQPASPMPQE 628
+ L+TQHPE L+KIQELE P+ E
Sbjct: 1 IILDTQHPESLEKIQELEDPSRYQRPE 27
|
This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with pfam00047. Length = 29 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-06
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
EGQS C P + W +G L +RF TL I DSG+Y
Sbjct: 1 EGQSVTLTCPAEGNPVPNIT--WLKDGKPLPESNRFVASGS----TLTIKSVSLEDSGLY 54
Query: 710 MCKAINRAG 718
C A N AG
Sbjct: 55 TCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 9e-06
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 201 AHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA----LDIMQCLPEDSGVY 256
C + W N P+ S ++ G + L I EDSG Y
Sbjct: 1 VTLTCLA--SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 257 TCRAVNALGQAVTS 270
TC A N+ G S
Sbjct: 59 TCVASNSAGTVSAS 72
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 530 PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAV 589
P P + W + + L +SSRI D ++++ +V DEG Y C A N G+A
Sbjct: 10 PKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKAN 66
Query: 590 TTASMKI 596
+T S+ +
Sbjct: 67 STGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 510 LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG-YVAMDLSH 568
L ++ + EGK + +C + GDP +V W +N++ L S K + G Y ++ +
Sbjct: 7 LPDVVTIMEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKG 64
Query: 569 VRAEDEGIYICKATNALG 586
V +ED G Y N G
Sbjct: 65 VSSEDSGKYGIVVKNKYG 82
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 666 PTMRFEWFVNGVEL----KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721
P++RF+WF NG E+ K ++ ++ L I+K AD+G Y C ++ G
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71
Query: 722 SSTSL 726
+ ++
Sbjct: 72 VTANV 76
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-----DFGYVAMDLSHVR 570
V +G A +C+ G PT ++W +N +PLE H + + H R
Sbjct: 13 VSKGDPATLNCK--AEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGR 70
Query: 571 A--EDEGIYICKATNALGEAVTTAS 593
DEG+Y+C A N+LGEAV+ +
Sbjct: 71 KGRSDEGVYVCVAHNSLGEAVSRNA 95
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 341 PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400
P K ++W + + S+R+ D LN + D G YTC A N G+A
Sbjct: 10 PKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKS---DEGKYTCFAENFFGKAN 66
Query: 401 TSSTLFV 407
++ +L V
Sbjct: 67 STGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 664 GDPTMRFEWFVNGVELKMGSR---FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
P++RF+WF +G EL ++ +++ L I K ADSG Y C N G
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 721 VSSTSL 726
+ ++
Sbjct: 70 TVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+PV T V EG++ +C G+P W+++ PL S
Sbjct: 1 KPVLTPSPTV---VFEGEDVTLTCSA--PGNPPPNYTWYKDGVPLSSSQNGFF------- 48
Query: 563 AMDLSHVRAEDEGIYICKATN 583
+V AED G Y C A+N
Sbjct: 49 ---TPNVSAEDSGTYTCVASN 66
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-05
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGV---ELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
G++A DC+V G PT W +NG R HV L +T P+D+
Sbjct: 1 GETARLDCQVE--GIPTPNITWSINGAPIEGTDPDPRRHVSSG----ALILTDVQPSDTA 54
Query: 708 VYMCKAINRAGEAVSSTSLKV 728
VY C+A NR G +++ + V
Sbjct: 55 VYQCEARNRHGNLLANAHVHV 75
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76 |
| >gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-05
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 510 LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG-YVAMDLSH 568
L ++ + EGK + +C + G+P +V WF+N++ +E S + K + G Y ++ +
Sbjct: 7 LPDVVTIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKG 64
Query: 569 VRAEDEGIYICKATNALG 586
V +ED G Y N G
Sbjct: 65 VTSEDSGKYSINVKNKYG 82
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 320 QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN-RVSTMHDFGYVALNFK 378
+P D VA + A E P G + V+W ++G P+ N RV + D G + +
Sbjct: 2 EP-SDTQVAVGEMAVLECS-PPRGHPEPTVSWRKDGQPLNLDNERVRIVDD-GNLLI--A 56
Query: 379 YTYPEDSGTYTCRAVNELGE 398
D GTY C A N +GE
Sbjct: 57 EARKSDEGTYKCVATNMVGE 76
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFG 692
+P TQ+ G ++E P G P W +G L + R + D G
Sbjct: 1 VEPSDTQVAVGEMAVLECSP--------PRGHPEPTVSWRKDGQPLNLDNERVRIVDD-G 51
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSST 724
L I + +D G Y C A N GE S+
Sbjct: 52 --NLLIAEARKSDEGTYKCVATNMVGERESAA 81
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 68 AHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
F+C++ +PV V W K + G R + D +L I + D G+YTC
Sbjct: 1 VEFQCEVGGDPVP----TVLWRKEDGELPKG-RAEILDDK---SLKIRNVTAGDEGSYTC 52
Query: 126 RAVNLVGFAEVQATLQ 141
A N+VG E A+L
Sbjct: 53 EAENMVGKIEASASLT 68
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 532 GDPTLKVEWFRNEKPLEDSSRITT---KHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588
P+L+ +WF++ K L ++ ++ + ++ + D G Y C N LG
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 589 VTTASM 594
TA++
Sbjct: 70 TVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
G++ DC G P W +NGV ++ + G TL ++ P D+ VY
Sbjct: 1 GETGRLDCEAE--GIPQPTITWRLNGVPIEELPPDPRRRVDGG-TLILSNVQPNDTAVYQ 57
Query: 711 CKAINRAGEAVSSTSLKV 728
C A N G +++ + V
Sbjct: 58 CNASNVHGYLLANAFVHV 75
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G+ F+C + G PT + W N + DS+R++ + GY + + V+ D+G Y
Sbjct: 1 GETVEFTC--VATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYT 58
Query: 579 CKATNALG 586
C+A N G
Sbjct: 59 CEAINTRG 66
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
GQ A C+ GDP W +L S + +D G TLDI D+G +
Sbjct: 1 GQRATLRCKAR--GDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFT 56
Query: 711 CKAINRAGEAVSSTSLKV 728
C A N AGEA ++ L +
Sbjct: 57 CIASNAAGEATATVELHI 74
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVA-LDIIDTIPEDSGTYTCRA 127
V WFK G+ + + L I + PEDSGTYTC
Sbjct: 18 VTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
+E G S ++C G+P + W NG L +R V+ L ITK +D
Sbjct: 9 TEADIGSSLRWEC--KASGNPRPAYRWLKNGQPLASENRIEVEAG----DLRITKLSLSD 62
Query: 706 SGVYMCKAINRAGEAVSSTSLKV 728
SG+Y C A N+ G +S L V
Sbjct: 63 SGMYQCVAENKHGTIYASAELAV 85
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEW-FRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
G+ A C+ GDP + W + K + +SSR T +D G +D+ +D G +
Sbjct: 1 GQRATLRCK--ARGDPEPAIHWISPDGKLISNSSR-TLVYDNG--TLDILITTVKDTGSF 55
Query: 578 ICKATNALGEAVTTASMKI 596
C A+NA GEA T + I
Sbjct: 56 TCIASNAAGEATATVELHI 74
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 6e-04
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 530 PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY--VAMDLSHVRAEDEGIYICKATNALGE 587
G P + W ++ +P+E K+ F M + V DE Y C A N GE
Sbjct: 27 ADGFPEPTMTWTKDGEPIESGEE---KYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE 83
Query: 588 AVTTASMKIKTK 599
+K+ K
Sbjct: 84 QEAEIHLKVFAK 95
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 7e-04
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGY------VALNFKYTYPEDSGTYTCRAVNEL 396
G+ + +TWL++G P + +R+ GY L + P DSG YTC N+
Sbjct: 20 GNPRPTITWLKDGKPFKKEHRIG-----GYKVRKKKWTLILESVVPSDSGKYTCIVENKY 74
Query: 397 GE 398
G
Sbjct: 75 GS 76
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 8e-04
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721
P P W L SR + D L++TK +D G Y C A N G+A
Sbjct: 10 PKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTK---SDEGKYTCFAENFFGKAN 66
Query: 722 SSTSLKV 728
S+ SL V
Sbjct: 67 STGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG-YVTLDITKCVPADS 706
IMEG++ + C V GDP W N L + ++V+ + G Y +L I DS
Sbjct: 13 IMEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDS 70
Query: 707 GVYMCKAINRAGEAVSSTSLKV 728
G Y N+ G ++ V
Sbjct: 71 GKYGIVVKNKYGGETVDVTVSV 92
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713
+ C V GDP W EL G R + D +L I D G Y C+A
Sbjct: 1 VEFQCEVG--GDPVPTVLWRKEDGELPKG-RAEILDDK---SLKIRNVTAGDEGSYTCEA 54
Query: 714 INRAGEAVSSTSLKV 728
N G+ +S SL V
Sbjct: 55 ENMVGKIEASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.001
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG-YVTLDITKCVPADS 706
IMEG++ + C V G+P WF N ++++ + V+ + G Y +L I DS
Sbjct: 13 IMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDS 70
Query: 707 GVYMCKAINR-AGEAVSST 724
G Y N+ GE V T
Sbjct: 71 GKYSINVKNKYGGETVDVT 89
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+TW NGVPI+ G L P D+ Y C A N G + ++ + V
Sbjct: 18 ITWRLNGVPIEELPPDPRRRVDGG-TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
G+ F C V T + W N + +R + T+ G+ L I D G YT
Sbjct: 1 GETVEFTCVATGVP--TPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYT 58
Query: 258 CRAVNALG 265
C A+N G
Sbjct: 59 CEAINTRG 66
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDII--DTIPEDSGTYTCRAVNLVG 132
+ W K+G+P HR +I +P DSG YTC N G
Sbjct: 25 TITWLKDGKPFKKEHRIGGY-KVRKKKWTLILESVVPSDSGKYTCIVENKYG 75
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.001
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 666 PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPA-DSGVYMCKAINRAGEAVS 722
P + W +NG E+K G L I A D+G Y C AINR G VS
Sbjct: 32 PPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTVVS 87
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTM---HDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
L+ W ++G + N+ + + L DSG YTC N LG
Sbjct: 10 EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69
Query: 400 VTSSTL 405
++ +
Sbjct: 70 TVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
+ W N + S RVS + GY L + D G YTC A+N G
Sbjct: 18 INWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG 66
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
G+ + WL+NG P+ + NR+ L DSG Y C A N+ G S
Sbjct: 25 GNPRPAYRWLKNGQPLASENRIEVEAG----DLRITKLSLSDSGMYQCVAENKHGTIYAS 80
Query: 403 STLFV 407
+ L V
Sbjct: 81 AELAV 85
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V G + F CR P + W R L + DF + + + +V+ D G
Sbjct: 13 VRPGADVSFICRAKS-KSPAYTLVWTRVGGGLPSRA-----MDFNGI-LTIRNVQLSDAG 65
Query: 576 IYICKATNALGEAVTTASM 594
Y+C +N L TA++
Sbjct: 66 TYVCTGSNMLDTDEATATL 84
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85 |
| >gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 66 GHAHFECKLEPVTDSNL-KVEWFKNGRPVTIGHRFRPIHDFGYVALD----IIDTIPEDS 120
EC SNL V W G P+ + + + + + I P D+
Sbjct: 12 NSVFLECSP----KSNLASVVWLFQGGPL----QRKEEPEERLLVTEDGLLIRSVSPADA 63
Query: 121 GTYTCRAVNLVGFAEVQATLQ 141
G YTC++V GF + AT
Sbjct: 64 GVYTCQSVEH-GFKQTLATYS 83
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578
G+ C G P + W N P+E+ + G + LS+V+ D +Y
Sbjct: 1 GETGRLDCEA--EGIPQPTITWRLNGVPIEELPPDPRRRVDGG-TLILSNVQPNDTAVYQ 57
Query: 579 CKATNALGEAVTTA 592
C A+N G + A
Sbjct: 58 CNASNVHGYLLANA 71
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143289 cd05881, Ig1_Necl-2, First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.003
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 515 AVEEGKNAHFSCRL-------IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
V EG+ A SCR+ I + +P + +FR+ +PL+DS + + LS
Sbjct: 8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLS 67
Query: 568 HVRAEDEGIYICKA-TNALGEAVTTASM 594
+V DEG Y C+ T+ EA TT ++
Sbjct: 68 NVSLSDEGRYFCQLYTDPPQEAYTTITV 95
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Length = 95 |
| >gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 529 IPV-GDPTLKVEWFRNEKPLEDSS---RITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584
+P+ G+P V W R +K ++ R+ + D ++ + EDEG+Y TN
Sbjct: 17 VPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGA--EREDEGVYTITVTNP 74
Query: 585 LGEAVTTASMKI 596
+GE + +K+
Sbjct: 75 VGEDHASLFVKV 86
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 661 VPV-GDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719
VP+ G PT W +G LK+ R ++ +L I +DSG Y N AGE
Sbjct: 6 VPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE 65
Query: 720 AVSSTSLKV 728
++ ++KV
Sbjct: 66 KSATINVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 15/70 (21%)
Query: 341 PVGDS-KLK----------VTWLRNGVPIQASN-RVSTMHDFGYVALNFKYTYPEDSGTY 388
PVG S +LK +TWL++ P+ + S + L+ K PEDSG Y
Sbjct: 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKW---TLSLKNLKPEDSGKY 63
Query: 389 TCRAVNELGE 398
TC N GE
Sbjct: 64 TCHVSNRAGE 73
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82 |
| >gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582
V+W+++ K LE + K + +V ED G Y CK T
Sbjct: 29 LPPVQWYKDCKLLEGDRKRFVKGSKLLI----QNVTEEDAGNYTCKLT 72
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92 |
| >gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136) | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 281 IQTETQHGESLSRLQQLEQG-RYQRT 305
I +TQH ESL ++Q+LE RYQR
Sbjct: 1 IILDTQHPESLEKIQELEDPSRYQRP 26
|
This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with pfam00047. Length = 29 |
| >gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Score = 36.5 bits (84), Expect = 0.004
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 534 PTLKVEWFRNEKPL----EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAV 589
P+L+ +WF+N K + + ++I + + +S D G Y C ++ LG
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71
Query: 590 TTASM 594
TA++
Sbjct: 72 VTANV 76
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.004
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 343 GDSKLKVTWLRNGVPI--QASNRVSTMHDFGYVAL-NFKYTYPEDSGTYTCRAVNELGEA 399
G ++TWL+NG+ I + S +++ + + + + N +Y ED+G YTC A NE G
Sbjct: 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY---EDTGAYTCIAKNEAGVD 65
Query: 400 VTSSTLFVE 408
S+LFVE
Sbjct: 66 EDISSLFVE 74
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 36.2 bits (83), Expect = 0.004
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 530 PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAV 589
P P K W + + L ++SRI+ D ++++ ++ DEG Y C A N G+A
Sbjct: 10 PKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKAN 66
Query: 590 TTASMKI 596
+T + +
Sbjct: 67 STGVLSV 73
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 808 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4194|consensus | 873 | 100.0 | ||
| KOG4194|consensus | 873 | 99.97 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.97 | |
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.96 | |
| KOG3515|consensus | 741 | 99.92 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.87 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.85 | |
| KOG3515|consensus | 741 | 99.84 | ||
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.78 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.72 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.71 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.69 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.69 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.68 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.67 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.67 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.66 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.66 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.66 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.65 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.64 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.64 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.63 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.62 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.61 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.61 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.61 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.61 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.61 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.61 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.61 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.61 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.61 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.6 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.6 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.6 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.6 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.6 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.6 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.6 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.59 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.59 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.59 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.59 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.59 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.58 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.58 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.58 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.58 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.57 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.57 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.57 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.57 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.57 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.56 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.56 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.56 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.56 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.55 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.55 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.54 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.54 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.54 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.53 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.53 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.53 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.53 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.53 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.53 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.53 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.52 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.52 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.52 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.52 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.51 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.51 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.51 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.51 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.51 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.51 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.5 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.5 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.5 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.5 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.49 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.49 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.49 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.49 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.49 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.49 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.48 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.48 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.48 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.48 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.48 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.48 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.47 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.47 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.47 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.46 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.46 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.46 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.46 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.46 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.46 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.46 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.45 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.44 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.44 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.44 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.44 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.44 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.43 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.43 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.43 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.43 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.42 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.42 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.42 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.42 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.42 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.42 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.41 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.41 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.41 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.41 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.4 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.4 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.39 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.39 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.39 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.38 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.38 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.38 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.38 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.37 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.37 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.37 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.37 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.37 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.37 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.36 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.36 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.36 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.36 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.35 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.34 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.33 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.33 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.33 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.32 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.31 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.31 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.31 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.3 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.3 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.29 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.29 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.28 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.28 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.28 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.26 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.26 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.26 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.25 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.25 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.25 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.24 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.24 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.23 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.23 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.22 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.22 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 99.21 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.2 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.19 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.17 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.16 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.16 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.15 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.15 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.15 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.15 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.14 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.12 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.11 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.11 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.11 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.07 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.07 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.07 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.05 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.05 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 99.05 | |
| smart00409 | 86 | IG Immunoglobulin. | 99.05 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.04 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.04 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.04 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 99.03 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.02 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.97 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.96 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.96 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.95 | |
| PHA03376 | 221 | BARF1; Provisional | 98.94 | |
| PHA03376 | 221 | BARF1; Provisional | 98.94 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.93 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.93 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.93 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.93 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.92 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.91 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.9 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.87 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.86 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.85 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.84 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.83 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.83 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.83 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.82 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.81 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.79 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.76 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.74 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.68 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.67 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.66 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.65 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.63 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.63 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.61 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.6 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.6 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.59 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.59 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.58 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.55 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.53 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.52 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.52 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.52 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.52 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.52 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.51 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.51 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.5 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.47 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.46 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.46 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.44 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.44 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.44 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.43 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.41 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.39 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.39 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.38 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.37 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.37 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.36 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.35 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.34 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.34 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.33 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.32 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.32 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.32 | |
| KOG0613|consensus | 1205 | 98.31 | ||
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.3 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.3 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.27 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.26 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.26 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.25 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.25 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.25 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.24 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.22 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.2 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.2 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.19 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.19 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.19 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.19 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.18 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.18 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.17 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.17 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.16 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.16 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.15 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.15 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.14 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.13 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.1 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.09 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.09 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.08 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.08 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.07 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.06 | |
| KOG0613|consensus | 1205 | 98.03 | ||
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.02 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.98 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.98 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.98 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.95 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.95 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.92 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.91 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.9 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.89 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.88 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.87 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.87 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.85 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.84 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.84 | |
| KOG1480|consensus | 909 | 97.83 | ||
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.83 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.79 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.77 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.74 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.74 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.68 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.68 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.68 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.67 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.67 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.66 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.66 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.66 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.64 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.63 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.62 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.61 | |
| KOG1480|consensus | 909 | 97.61 | ||
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.61 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.6 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.6 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.58 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.57 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.56 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.55 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.55 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.54 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.53 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.51 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.51 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.5 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.5 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.44 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.41 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.35 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 97.3 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.29 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.27 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.26 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.24 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.17 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.11 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 97.02 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.01 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.96 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 96.9 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.88 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.87 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.87 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.84 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 96.81 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.8 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.78 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.68 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.54 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.52 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.49 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.45 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.45 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 96.2 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.15 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 95.72 | |
| KOG4597|consensus | 560 | 95.67 | ||
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 95.66 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.67 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.47 | |
| KOG4597|consensus | 560 | 94.37 | ||
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 94.25 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 94.01 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 94.0 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 93.97 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 93.45 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 93.16 | |
| KOG1026|consensus | 774 | 92.68 | ||
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.54 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 92.52 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 92.51 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 92.36 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 92.35 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 92.01 | |
| KOG1026|consensus | 774 | 91.81 | ||
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 91.48 | |
| PRK14081 | 667 | triple tyrosine motif-containing protein; Provisio | 90.76 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 90.08 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 89.45 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 89.27 | |
| PF06832 | 89 | BiPBP_C: Penicillin-Binding Protein C-terminus Fam | 88.04 | |
| PHA03281 | 642 | envelope glycoprotein E; Provisional | 87.97 | |
| PF06582 | 28 | DUF1136: Repeat of unknown function (DUF1136); Int | 86.89 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 86.56 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 86.54 | |
| PF06832 | 89 | BiPBP_C: Penicillin-Binding Protein C-terminus Fam | 86.01 | |
| PRK14081 | 667 | triple tyrosine motif-containing protein; Provisio | 84.98 | |
| PF03921 | 91 | ICAM_N: Intercellular adhesion molecule (ICAM), N- | 84.77 | |
| PHA03281 | 642 | envelope glycoprotein E; Provisional | 81.29 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 81.28 | |
| PF06582 | 28 | DUF1136: Repeat of unknown function (DUF1136); Int | 81.21 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 80.91 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 80.26 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=523.85 Aligned_cols=503 Identities=23% Similarity=0.343 Sum_probs=396.7
Q ss_pred Cccccc-cccccceeeeccCCCchhhhhhh-ccCCccceee-cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCE
Q psy2145 15 PYLSSK-KETSYHWQNVPVPEWSKEQENAK-KKKNFIYYTV-TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR 91 (808)
Q Consensus 15 ~~~~~~-~ed~g~y~c~~~~~~~~~~~~~~-~~~~~~~~~~-~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~ 91 (808)
.+.... ..|.|.|+|.|.|..+...+... +...++..+- .....+ .+.+|+.+.|.|.... +.|.+.+.|+.+..
T Consensus 99 vI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v-~v~eG~~~~L~C~pP~-~~P~l~~~W~~~~~ 176 (1051)
T KOG3513|consen 99 VITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPV-EVEEGDGVVLPCNPPA-HFPPLRYYWMLNEF 176 (1051)
T ss_pred EecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcE-EEEeCCceEEeCCCCC-CCCCccEEehhccC
Confidence 344455 77999999999999988865433 4455555554 444555 9999999999999876 67889999998664
Q ss_pred Ee-ec--cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc---eEEEEEEEEecCCCccccccccccceeeeeec
Q psy2145 92 PV-TI--GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF---AEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165 (808)
Q Consensus 92 ~l-~~--~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (808)
+- .. +.|+....++ .|.|.++..+|.+.|.|.|.+..-. ....+.|++.....
T Consensus 177 ~~~~~~~~~r~~~~~~G---~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~------------------ 235 (1051)
T KOG3513|consen 177 PHFVQIDNRRVFSQENG---NLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNV------------------ 235 (1051)
T ss_pred CcccccCcceeEecccc---eEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccccc------------------
Confidence 32 22 2344433333 6999999999999999999873221 12234444421110
Q ss_pred cccccccccccccccCCCCeEEeec-CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCE-EccCCCceEEEecCceEEE
Q psy2145 166 DKSKYQRGEYIEETTTQAPIFTTSL-KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-PIKSGSRFTETNNFGFVAL 243 (808)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~L 243 (808)
+...+|.|.... +......|+.|.|+|.+ .|+|.|+|.|+|.|. ++... ....+.+. +|
T Consensus 236 -------------~~~~~P~i~~~~p~~~~a~~G~~v~LECfA--~G~P~P~i~W~k~~g~~~~~r--~~~~~~~~--vL 296 (1051)
T KOG3513|consen 236 -------------MREYAPKILVPFPETETALKGQSVKLECFA--LGNPTPQIKWRKVDGKPPPRR--ATYSNYGK--VL 296 (1051)
T ss_pred -------------ccccCCccccCCCCcccccCCCeEEEEEEe--cCCCCCcEEEEeCCCCCCCcc--eeeecccc--EE
Confidence 114566665554 46778899999999999 799999999999766 44432 22223223 89
Q ss_pred EEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC
Q psy2145 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR 323 (808)
Q Consensus 244 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~ 323 (808)
.|.+++.+|+|.|+|.|+|..|.......|.|.. +|.++..+.
T Consensus 297 ~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-------------------------------------~P~w~~~~~ 339 (1051)
T KOG3513|consen 297 KIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-------------------------------------PPYWLQKPQ 339 (1051)
T ss_pred EecccCcCCCeEEEEEEecccccceeeEEEEEec-------------------------------------Cchhhcccc
Confidence 9999999999999999999999888888888875 778888999
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCc---EEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR---VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
+..+..|+.+.|+|.+ .|.|.|+|+|++||.+|...++ +.+..+ +|+|.++...|+|.|.|.|+|.+|...
T Consensus 340 d~~~~~gs~v~~eC~a--~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~ 413 (1051)
T KOG3513|consen 340 DTEADTGSNVTLECKA--SGKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIY 413 (1051)
T ss_pred eeEecCCCCeEEEEEe--cCCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEe
Confidence 9999999999999999 8999999999999999997766 555443 799999999999999999999999999
Q ss_pred EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhh
Q psy2145 401 TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480 (808)
Q Consensus 401 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (808)
+++.|+|....
T Consensus 414 anA~L~V~a~~--------------------------------------------------------------------- 424 (1051)
T KOG3513|consen 414 ANAELKVLASA--------------------------------------------------------------------- 424 (1051)
T ss_pred eeeEEEEEccC---------------------------------------------------------------------
Confidence 99999998652
Q ss_pred hcccccCCCCCCCCcCCCCccCCCeeee-cCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC
Q psy2145 481 IRKLEDTEPHKRPEVDDNATKQRPVFTK-PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559 (808)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~P~f~~-~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~ 559 (808)
|.|.. ++.....+..|.++.|.|.. .+.|.|.++|.|+++.+..+.|+.+..++
T Consensus 425 -----------------------P~f~~~p~~~~~~a~~g~~v~i~C~~--~asP~p~~~W~k~~~~~~~~~r~~i~edG 479 (1051)
T KOG3513|consen 425 -----------------------PVFPLNPVERKVMAVVGGTVTIDCKP--FASPKPKVSWLKGGEKLLQSGRIRILEDG 479 (1051)
T ss_pred -----------------------CCCCCCccceEEEEEeCCeEEEeecc--CCCCcceEEEEcCCcccccCceEEECCCC
Confidence 22222 12222346789999999998 89999999999999988888999888776
Q ss_pred cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEE
Q psy2145 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFT 639 (808)
Q Consensus 560 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~ 639 (808)
+|.|.+++.+|+|.|+|.|.|..|.+...++|.|+.. ++|+
T Consensus 480 ---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~------------------------------------tri~ 520 (1051)
T KOG3513|consen 480 ---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA------------------------------------TRIT 520 (1051)
T ss_pred ---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecC------------------------------------ceEE
Confidence 6999999999999999999999999999999999975 4445
Q ss_pred eecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC---CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 640 QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM---GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 640 ~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
..+. ...+..|+.+.|.|++...-.....|.|.+||..+.. +.++......+...|+|.++...|+|.|+|+|.-.
T Consensus 521 ~~P~-~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~ 599 (1051)
T KOG3513|consen 521 LAPS-NTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTA 599 (1051)
T ss_pred eccc-hhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEe
Confidence 5333 3578999999999999433334567899999998763 44555544333357999999999999999999999
Q ss_pred CcceEEEEEEEEEeCCCccc
Q psy2145 717 AGEAVSSTSLKVKSKSDIVS 736 (808)
Q Consensus 717 ~G~~~~s~~l~V~~~p~~~~ 736 (808)
.-+++..+.|.|+++|+-+.
T Consensus 600 ~Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 600 LDSASARADLLVRGPPGPPP 619 (1051)
T ss_pred ecchhcccceEEecCCCCCC
Confidence 99999999999999987655
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-56 Score=489.30 Aligned_cols=469 Identities=25% Similarity=0.393 Sum_probs=359.5
Q ss_pred ceeecCCCCccccCCCC--cEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccC-cCCCeeEEEE
Q psy2145 50 YYTVTKPKSIENLRERG--HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI-PEDSGTYTCR 126 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~--~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~ 126 (808)
|.++.+|.++.....-+ .+.|.|.+. |+|.+++.|+|||..+...........+| +|.|.+.. ..|.|.|+|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~--G~P~Psy~W~kng~~~d~~~~~~~~~~~G--~lvI~~p~~~~d~G~YqC~ 115 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEAN--GNPEPSYRWTKNGTEFDPTEYPRVSVLGG--TLVITNPDAALDQGIYQCF 115 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEec--CCCCceeEEEECCeecccccccceeeecC--ceEecCCcchhhcceeEEE
Confidence 66666666552222223 499999999 68999999999999877544222222244 58888877 8899999999
Q ss_pred EEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE-eecCceeecCCCeEEEE
Q psy2145 127 AVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT-TSLKNCEIKEGQRAHFE 204 (808)
Q Consensus 127 a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~v~~G~~v~L~ 204 (808)
|+|..|.+.+ .+.|.. ...+.|. .....+.+.+|+.+.|.
T Consensus 116 AsN~~Gta~S~~~~l~~--------------------------------------~~i~~F~~e~~~~v~v~eG~~~~L~ 157 (1051)
T KOG3513|consen 116 ASNKLGTAVSREARLQF--------------------------------------GFIPKFKKEERSPVEVEEGDGVVLP 157 (1051)
T ss_pred eecccceeeccceeecc--------------------------------------cccccCccccCCcEEEEeCCceEEe
Confidence 9999997644 333332 2223333 34556889999999999
Q ss_pred EEEeecCCCCeEEEEeeCCEEc-cC--CCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEE---EEEEEEEeeC
Q psy2145 205 CRLIPVSDNTMKVEWFHNNVPI-KS--GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAV---TSGNLLVHSK 278 (808)
Q Consensus 205 C~~~~~~~p~~~v~W~~~g~~l-~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~~ 278 (808)
|..- .+.|.+.+.|..+..+- .. +.|+.... .| .|-+.++..+|.+.|.|.|.+..-... ..+.|.+...
T Consensus 158 C~pP-~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~-~G--~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~ 233 (1051)
T KOG3513|consen 158 CNPP-AHFPPLRYYWMLNEFPHFVQIDNRRVFSQE-NG--NLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSN 233 (1051)
T ss_pred CCCC-CCCCCccEEehhccCCcccccCcceeEecc-cc--eEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccc
Confidence 9874 68888999999866542 22 22443333 34 799999999999999999998332221 1234444211
Q ss_pred CcccccccccchhhhhhhhhccccccccccccccCCCCeeccCC-CceEeecCCeEEEEEEEeecCCCccEEEEEECCEe
Q psy2145 279 KSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM-RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357 (808)
Q Consensus 279 ~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~ 357 (808)
.. ....+|.+..+. .......|+.+.|+|.+ .|+|.|+|.|+|.|..
T Consensus 234 ~~------------------------------~~~~~P~i~~~~p~~~~a~~G~~v~LECfA--~G~P~P~i~W~k~~g~ 281 (1051)
T KOG3513|consen 234 NV------------------------------MREYAPKILVPFPETETALKGQSVKLECFA--LGNPTPQIKWRKVDGK 281 (1051)
T ss_pred cc------------------------------ccccCCccccCCCCcccccCCCeEEEEEEe--cCCCCCcEEEEeCCCC
Confidence 10 112466665443 35677899999999999 8999999999997764
Q ss_pred ccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccc
Q psy2145 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKR 437 (808)
Q Consensus 358 l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (808)
. ...+....+.+. +|.|.++..+|+|.|.|.|.|..|.......|+|..+
T Consensus 282 ~-~~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~--------------------------- 331 (1051)
T KOG3513|consen 282 P-PPRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAP--------------------------- 331 (1051)
T ss_pred C-CCcceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecC---------------------------
Confidence 2 223333333333 7999999999999999999999998888899998864
Q ss_pred ccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCccccc
Q psy2145 438 KEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVE 517 (808)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~ 517 (808)
|.++..+++. .+.
T Consensus 332 ------------------------------------------------------------------P~w~~~~~d~-~~~ 344 (1051)
T KOG3513|consen 332 ------------------------------------------------------------------PYWLQKPQDT-EAD 344 (1051)
T ss_pred ------------------------------------------------------------------chhhccccee-Eec
Confidence 4455555555 578
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC---eEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR---ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.|+++.|.|++ .|.|.|+|+|+|||.+|....+ +.+.. | .|.|.++...|+|.|.|.|+|.+|...+++.|
T Consensus 345 ~gs~v~~eC~a--~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~--g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 345 TGSNVTLECKA--SGKPNPTVKWLKNGEPLEPAERDPRYKIDD--G--TLIISNVQESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred CCCCeEEEEEe--cCCCCCceEEeeCCeecCccCCCcceEEeC--C--EEEEEecccccCeEEEeeeecccceEeeeeEE
Confidence 89999999999 8999999999999999997766 55543 3 79999999999999999999999999999999
Q ss_pred EEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC-ccccCCceEEEEEEEeeCCCCCeEEEEE
Q psy2145 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT-SEIMEGQSAHYDCRVVPVGDPTMRFEWF 673 (808)
Q Consensus 595 ~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~-~~v~~G~~v~l~C~v~~~g~P~p~i~W~ 673 (808)
.|...+ |.|...+... ..+..|..+.|.|.. .+.|.|.++|.
T Consensus 419 ~V~a~~-----------------------------------P~f~~~p~~~~~~a~~g~~v~i~C~~--~asP~p~~~W~ 461 (1051)
T KOG3513|consen 419 KVLASA-----------------------------------PVFPLNPVERKVMAVVGGTVTIDCKP--FASPKPKVSWL 461 (1051)
T ss_pred EEEccC-----------------------------------CCCCCCccceEEEEEeCCeEEEeecc--CCCCcceEEEE
Confidence 999753 4343333222 347789999999998 89999999999
Q ss_pred ECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCccccCC
Q psy2145 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESL 739 (808)
Q Consensus 674 ~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~~~ 739 (808)
|+|..+..++||.+..++ +|.|.+++.+|+|.|+|.|+|.+|.+...+.|.|+.++.|.....
T Consensus 462 k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~ 524 (1051)
T KOG3513|consen 462 KGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPS 524 (1051)
T ss_pred cCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccc
Confidence 999988889999987765 799999999999999999999999999999999999988876444
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=406.86 Aligned_cols=465 Identities=26% Similarity=0.449 Sum_probs=364.6
Q ss_pred CccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec----cCcEEEEeeCCeEEEEEccc--CcCCC
Q psy2145 47 NFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI----GHRFRPIHDFGYVALDIIDT--IPEDS 120 (808)
Q Consensus 47 ~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~----~~r~~~~~~~~~~~L~I~~~--~~~D~ 120 (808)
...+.++..|.++ .+..|+.++|.|.++ |+|.++|+|||+|..... ++|+. ..++.-+-|.+.+- ...|.
T Consensus 29 d~~p~iiehp~d~-vvs~~~patlnc~as--G~ppPti~w~k~G~~~~~~e~~shR~~-lp~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 29 DQPPRIIEHPHDL-VVSKGEPATLNCKAS--GDPPPTIEWYKDGENVFKGEPGSHRFL-LPDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred cCCCceEecchhh-hccCCCCceeecCCC--CCCCCceecccCCcccCCCCCCCccee-cCCccEEEEecccCCcccCCC
Confidence 3457778889998 899999999999999 689999999999965443 23333 33444344444331 22399
Q ss_pred eeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 121 GTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
|.|+|.|+|..|...+ .+.|.|.. .+-.|.+.+.++.+..|+
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vav-------------------------------------lrddfrv~prd~~~a~ge 147 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAV-------------------------------------LRDDFRVSPRDVQAAVGE 147 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEE-------------------------------------echhcccCcccccccccc
Confidence 9999999999997643 34554431 122355567777888999
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEcc--CCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE-EEEEEEe
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIK--SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVH 276 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~ 276 (808)
.++|+|.- +.+.|.+.+.|.|+|+++. ...++.+..+ | .|.|.++..+|.|.|.|++.|.+|...+ -+.|.|+
T Consensus 148 ~avlEcgp-P~ghpeptvSw~Kdg~pl~~~~~~~~~lisg-G--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 148 EAVLECGP-PRGHPEPTVSWVKDGKPLDHYDVPIIALISG-G--NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred eeEEeccC-CCCCCCCcceeecCCCccccccceeEEEecC-C--cEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 99999985 4799999999999999997 3333433444 4 7999999999999999999999998766 4788886
Q ss_pred eCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCE
Q psy2145 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356 (808)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~ 356 (808)
. +|.|...+.+..+..|..+.|.|++ .|+|.+.|.|.+++.
T Consensus 224 e-------------------------------------~P~f~~rp~~~~v~~g~~~~f~c~v--~GdP~P~Vrwkk~~~ 264 (1281)
T KOG4222|consen 224 E-------------------------------------KPWFWKRPKDLAVLVGAAAEFDCRV--GGDPQPTVRWKKDDP 264 (1281)
T ss_pred c-------------------------------------CCccccccccceeeccccccccccc--CCCCCCceeeeccCC
Confidence 5 7788889999999999999999999 899999999999877
Q ss_pred eccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccc
Q psy2145 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFK 436 (808)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (808)
.+.. .++.+..+.. +|.|..+.+.|.|.|.|.|.|..|....++.++|+.+
T Consensus 265 ~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap-------------------------- 315 (1281)
T KOG4222|consen 265 SLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP-------------------------- 315 (1281)
T ss_pred CCCc-cceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecC--------------------------
Confidence 7654 4566665533 7999999999999999999999999999999999864
Q ss_pred cccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccc
Q psy2145 437 RKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAV 516 (808)
Q Consensus 437 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v 516 (808)
|.|.....+. .+
T Consensus 316 -------------------------------------------------------------------P~f~kkp~dq-~v 327 (1281)
T KOG4222|consen 316 -------------------------------------------------------------------PSFGKKPRDQ-KV 327 (1281)
T ss_pred -------------------------------------------------------------------cccccccCcc-cc
Confidence 4444444444 47
Q ss_pred cCCCceEEEEEEeeCCCCCcEEEEEECCEe-c-------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKP-L-------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~-l-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
..|..++|.|.+ .|.|.|.+.|.|.|.. + ..+.+..+...+ .|+|.+++..|.|.|.|..-|..|+.
T Consensus 328 ~lg~~vt~pc~~--~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 328 ALGGTVTFPCET--LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred ccCceEEeeeec--CCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeeccccccccc
Confidence 789999999999 8999999999998753 2 123444554444 79999999999999999999999988
Q ss_pred EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCe
Q psy2145 589 VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM 668 (808)
Q Consensus 589 ~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p 668 (808)
...+.+.+......- ...|.+..... ..++.+|..+.|.|.+ .|.|.|
T Consensus 403 ~~~a~~~qt~~~~~~-----------------------------rPpp~i~~g~~-nQtl~v~s~a~l~c~a--tg~P~p 450 (1281)
T KOG4222|consen 403 LTKAYLEQTDVLTDS-----------------------------RPPPIIEQGPA-NQTLPVGSTASLPCSA--TGAPTP 450 (1281)
T ss_pred ccceeEEEEeeeccC-----------------------------CCCceeeeccc-ccccccCcccccChhh--hCCCCC
Confidence 888888777532110 01234444443 4567789999999999 899999
Q ss_pred EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 669 RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 669 ~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
.|.|+++|-.+...+....... ..+|+|.+...-|.|.|+|.|.+..|+++.+++|.|...
T Consensus 451 ~i~wl~dg~~v~~~d~~~s~~~--~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~ 511 (1281)
T KOG4222|consen 451 NISWLKDGCNVMNPDSRISQQE--IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA 511 (1281)
T ss_pred CchhhhcccccccCCcccceee--eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence 9999999988876543333333 238999999999999999999999999999999999854
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=389.83 Aligned_cols=496 Identities=23% Similarity=0.306 Sum_probs=366.6
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEcccCc-----CCCe
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDTIP-----EDSG 121 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~~~~~-----~D~G 121 (808)
..+++..|.+. .+|.++.|.|.....+.+.++|+|.|||..+... .|.+...++ +|.|.++.. -|.|
T Consensus 41 ~~~f~~ep~d~---~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~v~~~kh~~~~eg 114 (1381)
T KOG4221|consen 41 PLQFLLEPSDA---MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISSVLASKHNKVDEG 114 (1381)
T ss_pred cceEEeccccc---ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEeeecccccccccCc
Confidence 35567777753 7999999999987644457899999999887654 455555555 588887766 7899
Q ss_pred eEEEEEEec-Ccce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 122 TYTCRAVNL-VGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 122 ~Y~C~a~n~-~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
.|+|.|.-. .|.. +..+.|.+ ...+.|...+.+..+..|+
T Consensus 115 ~Yqc~atv~~~gsi~Sr~a~v~~--------------------------------------a~~~~f~~~~~~~t~~~g~ 156 (1381)
T KOG4221|consen 115 VYQCLATVEDVGSILSRTAKVAL--------------------------------------AGLADFALQPESTTLLYGQ 156 (1381)
T ss_pred eEEEEEEccccceeecceEEEEe--------------------------------------cccCccccCccceeEecCC
Confidence 999999854 3332 33344444 4467788888999999999
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeE-EEEEEEEEeeC
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA-VTSGNLLVHSK 278 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~ 278 (808)
++.|.|.+ .+.|.+.+.|.||..++..+.++....++ .|.|.++++.|.|.|+|.|++..-.. +..+.|+|...
T Consensus 157 ta~f~c~v--n~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~ 231 (1381)
T KOG4221|consen 157 TALFSCEV--NAEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSD 231 (1381)
T ss_pred cEEEEEEE--cCccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCC
Confidence 99999999 67888899999999999888877766665 79999999999999999999964433 44688888743
Q ss_pred CcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEec
Q psy2145 279 KSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358 (808)
Q Consensus 279 ~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l 358 (808)
+.. ...-.|...+....+.+|+.+.|+|.+ .|.|.|.|.|.|||..|
T Consensus 232 ~~~-------------------------------~~~~~fl~~p~~~~v~~g~~v~leCvv--s~~p~p~v~Wlrng~~i 278 (1381)
T KOG4221|consen 232 PGA-------------------------------LNKLVFLDEPSNAVVVEGDDVVLECVV--SGVPKPSVKWLRNGEKI 278 (1381)
T ss_pred ccc-------------------------------ccceeeecCCCccccccCCcEEEEEEe--cCCCCCceEEeeCCeee
Confidence 321 122346777778889999999999999 89999999999999999
Q ss_pred cCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccc
Q psy2145 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRK 438 (808)
Q Consensus 359 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (808)
..++ +++..- +...|.|.+++..|+|.|+|.|.|......++++|+|..+|
T Consensus 279 ~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P--------------------------- 329 (1381)
T KOG4221|consen 279 SVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPP--------------------------- 329 (1381)
T ss_pred eecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCC---------------------------
Confidence 8765 333322 22379999999999999999999976677778888888643
Q ss_pred cceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccC
Q psy2145 439 EEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEE 518 (808)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~ 518 (808)
.|+..+.+. ...+
T Consensus 330 ------------------------------------------------------------------~~~~~p~~l-~A~e 342 (1381)
T KOG4221|consen 330 ------------------------------------------------------------------GFTKAPTTL-VAHE 342 (1381)
T ss_pred ------------------------------------------------------------------CCCCCCcce-eeee
Confidence 344444444 4677
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+..+.|+|.+ .|.|.+++.|+|||..+..+..+++..+++ |.|.-+-..|.|.|.|.++|+.|.+...+.|.|..
T Consensus 343 ~~die~ec~~--~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 343 SMDIEFECPV--SGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP 417 (1381)
T ss_pred ccceeEeCCC--CCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence 9999999999 788999999999999988887777766543 88888889999999999999999999999997765
Q ss_pred cccccccccCcccccc---------cccccCCC-----------------------------------------------
Q psy2145 599 KAGLQLETQHPEGLKK---------IQELEQPA----------------------------------------------- 622 (808)
Q Consensus 599 ~~~i~~~~~~p~~~~~---------i~~l~~~~----------------------------------------------- 622 (808)
.+...-....+..... ...+++..
T Consensus 418 ~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~ 497 (1381)
T KOG4221|consen 418 QPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYF 497 (1381)
T ss_pred CCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEE
Confidence 5321100000000000 00000000
Q ss_pred ----------CCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCe----EEEEEECCEEccCCCcEEEE
Q psy2145 623 ----------SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM----RFEWFVNGVELKMGSRFHVQ 688 (808)
Q Consensus 623 ----------~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p----~i~W~~~g~~l~~~~~~~~~ 688 (808)
...+..++. ......++..+..+..-.+.|.+ ...|++ .|.|||.+..... ....+.
T Consensus 498 ~rv~A~n~~g~g~sS~pLk------V~t~pEgp~~~~a~ats~~ti~v--~WepP~~~n~~I~~yk~~ys~~~-~~~~~~ 568 (1381)
T KOG4221|consen 498 FRVRAKNEAGSGESSAPLK------VTTQPEGPVQLQAYATSPTTILV--TWEPPPFGNGPITGYKLFYSEDD-TGKELR 568 (1381)
T ss_pred EEEeccCcccCCccCCceE------EecCCCCCccccccccCcceEEE--EecCCCCCCCCceEEEEEEEcCC-CCceEE
Confidence 001111111 11112233335667778889999 688888 8999998877662 223333
Q ss_pred EeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCccc
Q psy2145 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736 (808)
Q Consensus 689 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~ 736 (808)
.+....+++|..+.+.+...|.|+|.|++|...++..|.|....+.+.
T Consensus 569 ~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Ps 616 (1381)
T KOG4221|consen 569 VENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPS 616 (1381)
T ss_pred EecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCC
Confidence 344456999999999999999999999999999999999986655443
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=345.08 Aligned_cols=486 Identities=19% Similarity=0.245 Sum_probs=326.7
Q ss_pred ccccceeeeccCCCchh--hhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE
Q psy2145 22 ETSYHWQNVPVPEWSKE--QENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF 99 (808)
Q Consensus 22 ed~g~y~c~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~ 99 (808)
-|+|.|+|.|.-+.... +..+.+...-.+.+..++.+. .+..|+++.|.|.+. +.|.+.+.|.||..+|..+.|+
T Consensus 111 ~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~-t~~~g~ta~f~c~vn--~e~~p~i~w~kn~~pl~~~~r~ 187 (1381)
T KOG4221|consen 111 VDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPEST-TLLYGQTALFSCEVN--AEPVPTIMWLKNDQPLPLDSRV 187 (1381)
T ss_pred ccCceEEEEEEccccceeecceEEEEecccCccccCccce-eEecCCcEEEEEEEc--CccCceeEEecccccccCCCcE
Confidence 49999999997662222 222222323345667788888 899999999999998 4788899999999999988888
Q ss_pred EEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc-eEEEEEEEEecCCCccccccccccceeeeeecccccccccccccc
Q psy2145 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEE 178 (808)
Q Consensus 100 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (808)
....++ .|.|.++++.|.|.|+|.|++.... .+..+.|+|...+..
T Consensus 188 i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~------------------------------ 234 (1381)
T KOG4221|consen 188 IVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA------------------------------ 234 (1381)
T ss_pred EEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc------------------------------
Confidence 777766 6999999999999999999987543 355678888743322
Q ss_pred ccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 179 ~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
...-.|...+.+..+.+|+++.|+|.+ .+.|.++|.|.|||..|..+. +.+...+ ...|.|.+++..|+|.|+|
T Consensus 235 --~~~~~fl~~p~~~~v~~g~~v~leCvv--s~~p~p~v~Wlrng~~i~~ds-~rivl~g-~~slliS~a~~~dSg~YtC 308 (1381)
T KOG4221|consen 235 --LNKLVFLDEPSNAVVVEGDDVVLECVV--SGVPKPSVKWLRNGEKISVDS-YRIVLVG-GSSLLISNATDDDSGKYTC 308 (1381)
T ss_pred --ccceeeecCCCccccccCCcEEEEEEe--cCCCCCceEEeeCCeeeeecc-eEEEEec-ccceEEeccccccCceEEE
Confidence 222337888899999999999999999 699999999999999997655 3333221 1279999999999999999
Q ss_pred EEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 259 RAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
+|.|......++++|+|.. +|.|+..+......++..+.|+|.
T Consensus 309 ~Atn~~D~idasaev~V~a-------------------------------------~P~~~~~p~~l~A~e~~die~ec~ 351 (1381)
T KOG4221|consen 309 RATNTNDSIDASAEVTVLA-------------------------------------PPGFTKAPTTLVAHESMDIEFECP 351 (1381)
T ss_pred EecCCCcccccceEEEEEc-------------------------------------CCCCCCCCcceeeeeccceeEeCC
Confidence 9999666677788888875 678888888888899999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccccccccc
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~ 418 (808)
+ .|.|.+.|.|+|||..+..++.+++..++. |+|..+-..|.|.|.|.++|..|.+...+.+.|...+.......
T Consensus 352 ~--~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~ 426 (1381)
T KOG4221|consen 352 V--SGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDL 426 (1381)
T ss_pred C--CCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCc
Confidence 9 789999999999999988888877766543 88888889999999999999999999988886654422111000
Q ss_pred chHHHhhh-hccccccccccccceeeeec-cCCeeEEecCCCceeec------CCce-eEecccCCchhhhhcccccCCC
Q psy2145 419 NEAALQKI-QNLEDTSRFKRKEEEEVEVT-QQPSFTVQLNGPTELVE------GEGT-IITDTQHPKGLEKIRKLEDTEP 489 (808)
Q Consensus 419 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 489 (808)
.+..-..+ ..+......+..-...+... ..+.+++.........+ +-+. +......+...+.++.......
T Consensus 427 ~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~ 506 (1381)
T KOG4221|consen 427 LPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEA 506 (1381)
T ss_pred cccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcc
Confidence 00000000 00000000000000000000 00111111000000000 0111 1112223333333333322222
Q ss_pred CCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCc----EEEEEECCEecCCCCCeEEEeeCcEEEEE
Q psy2145 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL----KVEWFRNEKPLEDSSRITTKHDFGYVAMD 565 (808)
Q Consensus 490 ~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~----~v~W~k~g~~l~~~~~~~~~~~~~~~~L~ 565 (808)
..........+..+|. .... +..+..-.++|.+ ...|++ .|+|||......... .....+.....++
T Consensus 507 g~g~sS~pLkV~t~pE-----gp~~-~~a~ats~~ti~v--~WepP~~~n~~I~~yk~~ys~~~~~-~~~~~~~n~~e~t 577 (1381)
T KOG4221|consen 507 GSGESSAPLKVTTQPE-----GPVQ-LQAYATSPTTILV--TWEPPPFGNGPITGYKLFYSEDDTG-KELRVENNATEYT 577 (1381)
T ss_pred cCCccCCceEEecCCC-----CCcc-ccccccCcceEEE--EecCCCCCCCCceEEEEEEEcCCCC-ceEEEecCccEEE
Confidence 2222222222222333 1221 4556677788988 677776 799999887665322 2233333444899
Q ss_pred ECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 566 I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
|.++.+.+...|.|+|.|.+|...++..+.|....
T Consensus 578 i~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 578 INGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred eecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 99999999999999999999999999999998643
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=337.80 Aligned_cols=396 Identities=23% Similarity=0.396 Sum_probs=315.1
Q ss_pred cccceeeeccCCCchhhhhhh-ccCCc-cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec--cCc
Q psy2145 23 TSYHWQNVPVPEWSKEQENAK-KKKNF-IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI--GHR 98 (808)
Q Consensus 23 d~g~y~c~~~~~~~~~~~~~~-~~~~~-~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~--~~r 98 (808)
|.|.|.|+|.|......+..- +...+ .--+-..|.++ .+..|+.++|+|.-.. +.|.+.|.|.|+|+++.. ..+
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~-~~a~ge~avlEcgpP~-ghpeptvSw~Kdg~pl~~~~~~~ 180 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDV-QAAVGEEAVLECGPPR-GHPEPTVSWVKDGKPLDHYDVPI 180 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccc-cccccceeEEeccCCC-CCCCCcceeecCCCcccccccee
Confidence 999999999999877654322 12111 12234567776 8899999999999764 789999999999999883 333
Q ss_pred EEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccc
Q psy2145 99 FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177 (808)
Q Consensus 99 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (808)
+.+ .++| .|.|.++...|+|.|.|++.|..|..++ .++|+|
T Consensus 181 ~~l-isgG--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv----------------------------------- 222 (1281)
T KOG4222|consen 181 IAL-ISGG--NLLISNVRKSDEGTYACVATNMVGERESIPARLSV----------------------------------- 222 (1281)
T ss_pred EEE-ecCC--cEEEeccccCCCceeeeeecccccccccccceeee-----------------------------------
Confidence 333 4445 5999999999999999999999998755 467777
Q ss_pred cccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEE
Q psy2145 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 178 ~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
..+|.|...+.+..+..|..+.|.|++ .|+|.+.+.|.|++-.++. .++.+..+.. +|.|.++++.|.|.|.
T Consensus 223 ---~e~P~f~~rp~~~~v~~g~~~~f~c~v--~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~ 294 (1281)
T KOG4222|consen 223 ---QEKPWFWKRPKDLAVLVGAAAEFDCRV--GGDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYV 294 (1281)
T ss_pred ---ccCCccccccccceeeccccccccccc--CCCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCCccccee
Confidence 568889999999999999999999999 7999999999998877764 4566666533 8999999999999999
Q ss_pred EEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEE
Q psy2145 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEA 337 (808)
Q Consensus 258 C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 337 (808)
|.+.|..|....++.|+|+. +|.|...+.+..+..|..++|.|
T Consensus 295 C~a~n~vG~l~asa~ltV~a-------------------------------------pP~f~kkp~dq~v~lg~~vt~pc 337 (1281)
T KOG4222|consen 295 CPAENLVGGLEASATLTVQA-------------------------------------PPSFGKKPRDQKVALGGTVTFPC 337 (1281)
T ss_pred eeccccccccccccceEEec-------------------------------------CcccccccCccccccCceEEeee
Confidence 99999999999999999986 77888888888899999999999
Q ss_pred EEeecCCCccEEEEEECCEec--------cCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2145 338 RLIPVGDSKLKVTWLRNGVPI--------QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409 (808)
Q Consensus 338 ~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 409 (808)
.+ .|+|.+.+.|.+.|... ....+..+...+ +|.|.++...|.|.|.|...+..|.....+.+.+..
T Consensus 338 ~~--~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~ 412 (1281)
T KOG4222|consen 338 ET--LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTD 412 (1281)
T ss_pred ec--CCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEe
Confidence 99 89999999999977422 122344444343 799999999999999999999888877766666654
Q ss_pred cccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCC
Q psy2145 410 KASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEP 489 (808)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (808)
.-.
T Consensus 413 ~~~----------------------------------------------------------------------------- 415 (1281)
T KOG4222|consen 413 VLT----------------------------------------------------------------------------- 415 (1281)
T ss_pred eec-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCcCCCCccCCCee-eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECC
Q psy2145 490 HKRPEVDDNATKQRPVF-TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568 (808)
Q Consensus 490 ~~~~~~~~~~~~~~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~ 568 (808)
...||.+ .....+ +++.+|..+.|.|.+ .|.|.+.+.|+++|-.+............+ +|+|.+
T Consensus 416 ----------~~rPpp~i~~g~~n-Qtl~v~s~a~l~c~a--tg~P~p~i~wl~dg~~v~~~d~~~s~~~~~--~l~i~d 480 (1281)
T KOG4222|consen 416 ----------DSRPPPIIEQGPAN-QTLPVGSTASLPCSA--TGAPTPNISWLKDGCNVMNPDSRISQQEIG--SLRIRD 480 (1281)
T ss_pred ----------cCCCCceeeecccc-cccccCcccccChhh--hCCCCCCchhhhcccccccCCcccceeeec--eeeeee
Confidence 0012333 333333 367789999999999 899999999999998776554332223223 799999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
...-|.|.|+|+|.+..|+..-+++|.|....
T Consensus 481 l~~~DtG~YTc~as~~~ges~wSatl~v~~~~ 512 (1281)
T KOG4222|consen 481 LKGPDTGRYTCIASDESGESTWSATLTVEKAG 512 (1281)
T ss_pred eecCCCcceeeeccCcccccccceeeEhhhcC
Confidence 99999999999999999999999999998753
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=276.23 Aligned_cols=283 Identities=25% Similarity=0.432 Sum_probs=231.4
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-----CCceEEEecC--------ceEEEEEcc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-----GSRFTETNNF--------GFVALDIMQ 247 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-----~~~~~~~~~~--------~~~~L~I~~ 247 (808)
...|+|...|..+.+..|+.++|+|.+.+.+..++.+.|.++++.... ..++.....+ -...|.+.+
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 567999999999999999999999999654577899999998774321 1111111101 123699999
Q ss_pred CCCCCcEEEEEEEEeCceeEEE-EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceE
Q psy2145 248 CLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIH 326 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 326 (808)
|...|.|.|+|+++|..|+..+ .+.|+|.. .|.|+..|.+..
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~-------------------------------------~PsFtktP~dlt 623 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQ-------------------------------------APSFTKTPEDLT 623 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeec-------------------------------------cCccccCcccce
Confidence 9999999999999999998765 58888864 789999999999
Q ss_pred eecCCeEEEEEEEeecCCCccEEEEEECCEe-ccC--CCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEE
Q psy2145 327 VAENQAAHFEARLIPVGDSKLKVTWLRNGVP-IQA--SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403 (808)
Q Consensus 327 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~-l~~--~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~ 403 (808)
+..|+.+.|+|.+ .|.|.|+|.|-|+|.. .+. ..|..+..++. .+.|.+|+.+|+|.|+|.|.|.+|..+.++
T Consensus 624 l~tg~mArl~CaA--tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanA 699 (873)
T KOG4194|consen 624 LRTGQMARLECAA--TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANA 699 (873)
T ss_pred eecccceeeeeec--cCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeece
Confidence 9999999999999 8999999999998865 443 34666666655 688999999999999999999999999999
Q ss_pred EEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcc
Q psy2145 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRK 483 (808)
Q Consensus 404 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (808)
+|.|...
T Consensus 700 tL~V~e~------------------------------------------------------------------------- 706 (873)
T KOG4194|consen 700 TLTVLET------------------------------------------------------------------------- 706 (873)
T ss_pred EEEEecC-------------------------------------------------------------------------
Confidence 9999864
Q ss_pred cccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC-cEEEEEECCEecCCCCCeEEEeeCcEE
Q psy2145 484 LEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYV 562 (808)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~-~~v~W~k~g~~l~~~~~~~~~~~~~~~ 562 (808)
|.|..|+.+. .|..|+++.|.|.+ .|.|. |.+.|+|++++|.-..|.+...++.
T Consensus 707 --------------------p~f~~PL~~~-~V~~get~vlqC~a--~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQ-- 761 (873)
T KOG4194|consen 707 --------------------PSFSIPLEDQ-LVVVGETLVLQCLA--EGAPADPRLEWFKEDKPILITERHTFPDGDQ-- 761 (873)
T ss_pred --------------------Ccccccccce-EEEecceEEEEEec--CCCCCCccccccCCCCceEEeecccCCCCCe--
Confidence 4455556555 58899999999999 78887 9999999999998776655544333
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccc
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGL 602 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i 602 (808)
.|.+.+...+|+|.|+|+..|..|.......+.+...+..
T Consensus 762 llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 762 LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 6889999999999999999999998888888887766543
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=267.14 Aligned_cols=279 Identities=25% Similarity=0.378 Sum_probs=225.6
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-----cCcEEEEe-e-------CCeEEEEEccc
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-----GHRFRPIH-D-------FGYVALDIIDT 115 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-----~~r~~~~~-~-------~~~~~L~I~~~ 115 (808)
.+.++.+|..+ .+..|+.++|+|.+.+....+.++.|.++++.... .-++.... + .....|.+.+|
T Consensus 503 kpqI~~qPe~~-~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 503 KPQIVTQPETV-SALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CcceecCchHh-hhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 46778899998 88999999999999864456679999998864321 11111111 0 12246999999
Q ss_pred CcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCcee
Q psy2145 116 IPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 194 (808)
+..|+|.|+|+++|.+|.. +..+.|+| ...|.|+..|.+.+
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV--------------------------------------~~~PsFtktP~dlt 623 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTV--------------------------------------NQAPSFTKTPEDLT 623 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEe--------------------------------------eccCccccCcccce
Confidence 9999999999999999976 45678877 46789999999999
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEE-ccCC--CceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVP-IKSG--SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~-l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
+..|+.+.|.|.+ .|.|.|+|.|-|+|.. .+.. .|..++.++. .+-|.|++.+|.|.|+|.|.|.+|..+.++
T Consensus 624 l~tg~mArl~CaA--tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanA 699 (873)
T KOG4194|consen 624 LRTGQMARLECAA--TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANA 699 (873)
T ss_pred eecccceeeeeec--cCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeece
Confidence 9999999999999 7999999999998766 5432 3444444444 678999999999999999999999999999
Q ss_pred EEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc-cEEE
Q psy2145 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVT 350 (808)
Q Consensus 272 ~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~ 350 (808)
.|+|.. .|.|..|+.+..+..|+++.|.|.+ .|.|+ |.+.
T Consensus 700 tL~V~e-------------------------------------~p~f~~PL~~~~V~~get~vlqC~a--~~~~a~pr~~ 740 (873)
T KOG4194|consen 700 TLTVLE-------------------------------------TPSFSIPLEDQLVVVGETLVLQCLA--EGAPADPRLE 740 (873)
T ss_pred EEEEec-------------------------------------CCcccccccceEEEecceEEEEEec--CCCCCCcccc
Confidence 999976 4567778889999999999999998 78777 9999
Q ss_pred EEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy2145 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 351 W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 411 (808)
|+|+.++|.-..+.....++. -|.+.+...+|+|.|+|...|..|....-..+.|..++
T Consensus 741 W~k~d~pil~t~rh~f~d~dQ--llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 741 WFKEDKPILITERHTFPDGDQ--LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ccCCCCceEEeecccCCCCCe--EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 999999987776655433333 58888888999999999999999988777666666544
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=257.28 Aligned_cols=261 Identities=19% Similarity=0.308 Sum_probs=181.3
Q ss_pred CceEeecCCeEEEEEEEe---ecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2145 323 RDIHVAENQAAHFEARLI---PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~---~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 399 (808)
....+.+|+++.|.|.+. ..|.|.++|+|+|+|... .+.....+ +. .|.|.++..+|+|.|+|.|.|..|..
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~-g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDN-GS-NMLILNPTQSDSGIYICITKNETYCD 108 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccC-Cc-eEEEcccCcccCeEEEEEEECCCcce
Confidence 344566899999999862 148888999999998532 22222223 32 47799999999999999999999988
Q ss_pred EEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhh
Q psy2145 400 VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLE 479 (808)
Q Consensus 400 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (808)
..++.|+|.....
T Consensus 109 ~~s~~L~V~~~~~------------------------------------------------------------------- 121 (326)
T PHA02785 109 MMSLNLTIVSVSE------------------------------------------------------------------- 121 (326)
T ss_pred EEEEEEEEEecCC-------------------------------------------------------------------
Confidence 8888888875321
Q ss_pred hhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEE---eeCCCCCcEEEEEECCEecCCCCCeEEE
Q psy2145 480 KIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRL---IPVGDPTLKVEWFRNEKPLEDSSRITTK 556 (808)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v---~~~g~P~~~v~W~k~g~~l~~~~~~~~~ 556 (808)
|.|...+.+ ..+.+|..+.|.|.. ...+.|.+.|+|++++. + .+.++...
T Consensus 122 ------------------------~~~~~~~~~-~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~ 174 (326)
T PHA02785 122 ------------------------SNIDLISYP-QIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR 174 (326)
T ss_pred ------------------------Cccceeecc-ceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec
Confidence 001000001 136789999999962 11468999999998753 3 33444432
Q ss_pred eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE----EEEEEEecccccccccCcccccccccccCCCCCCCCCCccc
Q psy2145 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT----ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632 (808)
Q Consensus 557 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s----~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~ 632 (808)
. .+ .|.|.+++.+|+|.|+|.|.|..|..... +.|.|..+.
T Consensus 175 ~-~~--~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~-------------------------------- 219 (326)
T PHA02785 175 T-PG--IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRI-------------------------------- 219 (326)
T ss_pred C-CC--eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccC--------------------------------
Confidence 2 22 79999999999999999999998876543 334443210
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCC---eEEEEEECCEEccCC-----CcEEEEEe-----C---CEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT---MRFEWFVNGVELKMG-----SRFHVQHD-----F---GYVTL 696 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~---p~i~W~~~g~~l~~~-----~~~~~~~~-----~---~~~~L 696 (808)
.+|.+.. + ....+..|+.++|.|.+ .|.|. +.|.|+|||+.|... .++..... . ....|
T Consensus 220 -~pp~~~~-p-~~~~~~~G~~v~L~C~a--~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 294 (326)
T PHA02785 220 -IPPTMQL-P-EGVVTSIGSNLTIACRV--SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRL 294 (326)
T ss_pred -CCceecC-C-CcEEecCCCcEEEEEEE--ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEE
Confidence 1233322 2 23457789999999999 78886 489999999998643 23332221 0 13589
Q ss_pred EEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 697 DITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 697 ~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
+|.+|+.+|+|.|+|.|.|..|....
T Consensus 295 ~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 295 NINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred EECCcchhcCeeeEEEEEeccCceEe
Confidence 99999999999999999999854433
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=249.80 Aligned_cols=257 Identities=20% Similarity=0.265 Sum_probs=182.6
Q ss_pred ccCCCCcEEEEEEEee---CCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEE
Q psy2145 61 NLRERGHAHFECKLEP---VTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~---~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 137 (808)
.+.+|+.+.|.|.+.. .|.|.+++.|+|+|... .+..... .+. .|.|.++..+|+|.|+|.|.|..|....+
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~-~g~-~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPID-NGS-NMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEcc-CCc-eEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 5678999999998721 15788899999998532 1222222 222 58899999999999999999999988888
Q ss_pred EEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe---ecCCCC
Q psy2145 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI---PVSDNT 214 (808)
Q Consensus 138 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~---~~~~p~ 214 (808)
+.|+|.... +|.|...+.+..+.+|..+.|.|... ..+.|.
T Consensus 112 ~~L~V~~~~------------------------------------~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~ 155 (326)
T PHA02785 112 LNLTIVSVS------------------------------------ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN 155 (326)
T ss_pred EEEEEEecC------------------------------------CCccceeeccceecccCcEEEECCChhhcccCCCC
Confidence 988886421 12222233345577999999999721 136788
Q ss_pred eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE----EEEEEEeeCCcccccccccch
Q psy2145 215 MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT----SGNLLVHSKKSIQTETQHGES 290 (808)
Q Consensus 215 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~----~~~l~V~~~~~i~~~~~~~~~ 290 (808)
+.|+|++++. + ...++..... + .|.|.+++.+|.|.|+|.|.|..|.... .+.|.|..+
T Consensus 156 ~~i~W~k~~~-~-~~~r~~~~~~-~--~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~------------ 218 (326)
T PHA02785 156 ADIIWSGHRR-L-RNKRLKQRTP-G--IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR------------ 218 (326)
T ss_pred ceEEEccCCc-c-CCcceEecCC-C--eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc------------
Confidence 9999998653 3 3344443222 2 7999999999999999999998886543 334554321
Q ss_pred hhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc---cEEEEEECCEeccCCC-----
Q psy2145 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK---LKVTWLRNGVPIQASN----- 362 (808)
Q Consensus 291 ~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~---~~v~W~~~g~~l~~~~----- 362 (808)
..+|.+..+ ....+..|+.++|.|.+ .|.|. +.|.|++||..|...+
T Consensus 219 ----------------------~~pp~~~~p-~~~~~~~G~~v~L~C~a--~g~P~~~~~~v~W~kng~~i~~~~~~~~~ 273 (326)
T PHA02785 219 ----------------------IIPPTMQLP-EGVVTSIGSNLTIACRV--SLRPPTTDADVFWISNGMYYEEDDEDGDG 273 (326)
T ss_pred ----------------------CCCceecCC-CcEEecCCCcEEEEEEE--ECCCCCCCceEEEEECCEECCCcCCCCce
Confidence 135555433 56777889999999999 67665 4899999999886431
Q ss_pred cEEEEee-----C---cEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 363 RVSTMHD-----F---GYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 363 ~~~~~~~-----~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
++..... . ....|.|.++..+|+|.|+|.|.|..|...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 274 RISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred eEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 2222211 0 134799999999999999999999875443
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=234.33 Aligned_cols=473 Identities=18% Similarity=0.190 Sum_probs=299.8
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
....+-.. .+..|+.|.|.|.+.+ ++|...|+||+.+..+. .|+....+. +|.......+.-+.|.|+|.|..
T Consensus 10 ~~~~~l~~-~~~~g~~v~l~C~v~~-~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ns~ 82 (741)
T KOG3515|consen 10 CESSSLTV-GLRLGEDVPLPCRVNS-NPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAFNSV 82 (741)
T ss_pred ccCCCCCh-hhccCCcceeeeecCC-CCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhcccc
Confidence 33444455 7899999999999997 67888999999998877 454444433 68888887888899999999984
Q ss_pred cce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeec
Q psy2145 132 GFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPV 210 (808)
Q Consensus 132 g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~ 210 (808)
+.. .....+.| ..+|.-...........+..+.+.|.+...
T Consensus 83 ~~~~~~~~~l~v--------------------------------------~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~ 124 (741)
T KOG3515|consen 83 GMPSRCPMILDV--------------------------------------DYPPACLPELGEIFQVDKGVVQIICSAKVA 124 (741)
T ss_pred cCceecceeecc--------------------------------------ccCccccccccchhhhcCCeEEEEEeecCC
Confidence 432 12222222 344544445555667788999999977667
Q ss_pred CCCCeEEEEeeCCEEccCCCc--eEEE--ecCc----eEEEEEccCCCCCcEEEEEEEEeC---ceeEEEEEEEEEeeCC
Q psy2145 211 SDNTMKVEWFHNNVPIKSGSR--FTET--NNFG----FVALDIMQCLPEDSGVYTCRAVNA---LGQAVTSGNLLVHSKK 279 (808)
Q Consensus 211 ~~p~~~v~W~~~g~~l~~~~~--~~~~--~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~ 279 (808)
+.|.+.+.|+.++........ .... ..++ ...|.+...+.+|.|.|+|.|.|. .+.......+.|....
T Consensus 125 ~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~ 204 (741)
T KOG3515|consen 125 GRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC 204 (741)
T ss_pred CCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc
Confidence 889999999998875532221 1100 0111 225778888899999999999884 2222233333332210
Q ss_pred cccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEecc
Q psy2145 280 SIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359 (808)
Q Consensus 280 ~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~ 359 (808)
....+........+.+|+.+.|.|.+. .|+|.+.++|+++..++.
T Consensus 205 ----------------------------------~~~~~~~~~~~qsF~~g~~inlvc~~~-gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 205 ----------------------------------KGIGITGAQEQQSFTEGQTINLVCNAQ-GGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred ----------------------------------ccceecchhhcCcccccceEEEEehhh-cCCcchhhhhccccccch
Confidence 111222222235678999999999664 789999999999988776
Q ss_pred CCCcEEEEeeCc-EEEEEEccCCCC-CCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccc
Q psy2145 360 ASNRVSTMHDFG-YVALNFKYTYPE-DSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKR 437 (808)
Q Consensus 360 ~~~~~~~~~~~~-~~~L~I~~v~~~-d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (808)
.++......++. ........+.+. +.-...|.+.| .+.+. ..+.|+.++.
T Consensus 250 ~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~--~~tav~~~~~------------------------- 301 (741)
T KOG3515|consen 250 ESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAAS--QITAVQVKPT------------------------- 301 (741)
T ss_pred hhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccc--eeeecccccc-------------------------
Confidence 653222222211 112222233333 34467799988 22221 2222222211
Q ss_pred ccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCccccc
Q psy2145 438 KEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVE 517 (808)
Q Consensus 438 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~ 517 (808)
-...+.+...+.
T Consensus 302 --------------------------------------------------------------------~~~Ist~~~~ls 313 (741)
T KOG3515|consen 302 --------------------------------------------------------------------AVPISTSDSGLS 313 (741)
T ss_pred --------------------------------------------------------------------cccccCcccccc
Confidence 011111111356
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE----EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT----KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.|+...+.|... .++|.+.+.|+|+............ ........+........|.|.|+|.|-|..+...++..
T Consensus 314 ~g~s~r~~c~~s-ss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~ 392 (741)
T KOG3515|consen 314 SGRSARSSCVSS-SSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSS 392 (741)
T ss_pred cccccccceecc-CCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccc
Confidence 788999999865 7889999999997655443221110 11112235777788889999999999998866666555
Q ss_pred EEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEE
Q psy2145 594 MKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEW 672 (808)
Q Consensus 594 l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W 672 (808)
+.+...+ +|.|...-.-...+.+++.....-.+ .|.| .+.+.|
T Consensus 393 ~~l~~l~----------------------------------~p~~L~~~~~~v~~~e~d~~~~~~~~--~~~p~~~~~~w 436 (741)
T KOG3515|consen 393 FLLPVLP----------------------------------SPAFLVRHKTAVVAMEQDHQAAPLPV--RGAPAERTFYW 436 (741)
T ss_pred eeccccC----------------------------------CchhhhhcccceeeccCccccccCcc--cCCCcccchhh
Confidence 5544322 24443333223445666666666555 3555 678999
Q ss_pred EECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 673 FVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 673 ~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
.+++..+....+-.+..-.+...+.+.++...|.|.|.|.|+|..|.+.....+.+...|.+...
T Consensus 437 ~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~ 501 (741)
T KOG3515|consen 437 TFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHL 501 (741)
T ss_pred eecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCccccc
Confidence 99999998755433222222235557779999999999999999999999999889888776543
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=185.62 Aligned_cols=159 Identities=19% Similarity=0.301 Sum_probs=119.5
Q ss_pred cccCCCceEEEEEEeeCCCC-----------CcEEEEEECCEec--CC-CCC-----eEEEe-eCcEEEEEECCCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP-----------TLKVEWFRNEKPL--ED-SSR-----ITTKH-DFGYVAMDLSHVRAEDE 574 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P-----------~~~v~W~k~g~~l--~~-~~~-----~~~~~-~~~~~~L~I~~v~~~D~ 574 (808)
.+.+|++|.|.|.+ .+.| .+.|.|+|++... .. +.+ +.... ......|.|.+++.+|+
T Consensus 33 ~v~eGe~v~L~C~~--~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 33 YAKFGDPMVLLCTG--KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred EecCCCCEEEEccc--cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 57899999999998 5543 4589999998642 11 111 00000 11123799999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
|.|+|.|.|..|....++.|.|...+. ...+.+|+.+
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~~-------------------------------------------~~~~~~G~~v 147 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGTI-------------------------------------------NYQFNSGKDS 147 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCCc-------------------------------------------cceEecCCCE
Confidence 999999999999988888888843110 1346789999
Q ss_pred EEEEEEee---CCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 655 HYDCRVVP---VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 655 ~l~C~v~~---~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
.|.|.+.. .|.|.|.|+|||||++|..++++.+..+++ +|.|.++..+|+|.|+|.|+..++..
T Consensus 148 ~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 148 KLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred EEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeECCE
Confidence 99999831 145789999999999999888877664433 89999999999999999999876433
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=178.94 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=120.2
Q ss_pred CCCccccCCCCcEEEEEEEeeCC---------CCCceEEEEeCCEEe--ec-cCcE--E-EEee---CCeEEEEEcccCc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVT---------DSNLKVEWFKNGRPV--TI-GHRF--R-PIHD---FGYVALDIIDTIP 117 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~---------~p~~~v~W~~~g~~l--~~-~~r~--~-~~~~---~~~~~L~I~~~~~ 117 (808)
...+ .+.+|++|.|.|.+.+.. ...+.|.|+|++... .. +.|- . +..+ ....+|.|.+++.
T Consensus 29 ~~~~-~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPV-YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceE-EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 3445 789999999999986422 235699999988652 11 1220 0 0001 1123799999999
Q ss_pred CCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
+|+|.|+|.|.|..|..+.++.|.|... +.+..+.+
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------------------------------------------~~~~~~~~ 143 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFDSG--------------------------------------------TINYQFNS 143 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEecC--------------------------------------------CccceEec
Confidence 9999999999999888888888877421 12345678
Q ss_pred CCeEEEEEEEeec---CCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 198 GQRAHFECRLIPV---SDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 198 G~~v~L~C~~~~~---~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
|+++.|.|.+.+. +.|.++|+|+|||++|..+.++....+++ +|.|.+++.+|+|.|+|.|+...
T Consensus 144 G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 144 GKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence 9999999997411 34678999999999998777776554444 89999999999999999999854
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=198.95 Aligned_cols=507 Identities=16% Similarity=0.112 Sum_probs=296.0
Q ss_pred ccccccccccceeeeccCCCchhhhhhh-ccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAK-KKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT 94 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~ 94 (808)
+-...+..-+.|.|.+.|....-..... ....+.+..+..-..+ ....+..+.+.|.+...+.|.+.+.|+.++....
T Consensus 63 ~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~-~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~ 141 (741)
T KOG3515|consen 63 TTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEI-FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL 141 (741)
T ss_pred eecchhhhhhhhhhhhcccccCceecceeeccccCccccccccch-hhhcCCeEEEEEeecCCCCCCcceeeeeccEEee
Confidence 3444556677899999887333222211 1112223233333333 5678899999997776678999999999987665
Q ss_pred ccCc--EEEE---ee---CCeEEEEEcccCcCCCeeEEEEEEec---CcceEEEEEEEEecCCCccccccccccceeeee
Q psy2145 95 IGHR--FRPI---HD---FGYVALDIIDTIPEDSGTYTCRAVNL---VGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163 (808)
Q Consensus 95 ~~~r--~~~~---~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 163 (808)
.... .... .. .....|.+.....+|.|.|+|.|.|. .+.......+.|....
T Consensus 142 ~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~----------------- 204 (741)
T KOG3515|consen 142 NAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC----------------- 204 (741)
T ss_pred cccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc-----------------
Confidence 4321 1110 01 11236888889999999999999984 3334444444443211
Q ss_pred eccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCc-e-E
Q psy2145 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG-F-V 241 (808)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~-~ 241 (808)
....+..........+|+.+.|.|.+. .+.|...++|+++...+..+........+. . .
T Consensus 205 ------------------~~~~~~~~~~~qsF~~g~~inlvc~~~-gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~ 265 (741)
T KOG3515|consen 205 ------------------KGIGITGAQEQQSFTEGQTINLVCNAQ-GGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSS 265 (741)
T ss_pred ------------------ccceecchhhcCcccccceEEEEehhh-cCCcchhhhhccccccchhhhcccCCCCCCcccc
Confidence 111111122225688999999999877 499999999999988776542221111111 1 1
Q ss_pred EEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccC
Q psy2145 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321 (808)
Q Consensus 242 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~ 321 (808)
.+....-...+.-...|.+.| .+... ..+.|..++. .....
T Consensus 266 ~~~~~~~r~~~~~~~kc~a~n-~~~~~--~~tav~~~~~------------------------------------~~~Is 306 (741)
T KOG3515|consen 266 TLVLRVGRQDLQAQLKCKASN-LLAAS--QITAVQVKPT------------------------------------AVPIS 306 (741)
T ss_pred cccccccccchhhhhhccccC-ccccc--eeeecccccc------------------------------------ccccc
Confidence 233333333334466799998 22222 2223322110 00111
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEE-EEeeC---cEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TMHDF---GYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.....+..|+...+.|... .++|.+.+.|+++......+.... -.... ....+........|.|.|+|.|.|...
T Consensus 307 t~~~~ls~g~s~r~~c~~s-ss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~ 385 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSS-SSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLEL 385 (741)
T ss_pred Ccccccccccccccceecc-CCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccc
Confidence 1223377899999999764 688999999999665544322111 11111 223455666777899999999998775
Q ss_pred ceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCch
Q psy2145 398 EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKG 477 (808)
Q Consensus 398 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (808)
...++....+...+
T Consensus 386 ~~~sss~~~l~~l~------------------------------------------------------------------ 399 (741)
T KOG3515|consen 386 AHSSSSSFLLPVLP------------------------------------------------------------------ 399 (741)
T ss_pred ccccccceeccccC------------------------------------------------------------------
Confidence 44444333332111
Q ss_pred hhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC--eEE
Q psy2145 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITT 555 (808)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~--~~~ 555 (808)
+|.|...-.......+++.......+. ...+.+.+.|.+++.++..... +.+
T Consensus 400 -------------------------~p~~L~~~~~~v~~~e~d~~~~~~~~~-~~p~~~~~~w~~~~~~~~~~~g~~~~v 453 (741)
T KOG3515|consen 400 -------------------------SPAFLVRHKTAVVAMEQDHQAAPLPVR-GAPAERTFYWTFRLYKLSQVDGGVVRV 453 (741)
T ss_pred -------------------------CchhhhhcccceeeccCccccccCccc-CCCcccchhheecceecccccCceEEe
Confidence 111111111111233444444444442 3445677999999998876543 333
Q ss_pred EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCC
Q psy2145 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635 (808)
Q Consensus 556 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~ 635 (808)
....+ .+.+.++.+.|.|.|.|.|+|..|.+.....+.+...|.+.
T Consensus 454 ~~~~~--~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~-------------------------------- 499 (741)
T KOG3515|consen 454 GAGAG--LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNH-------------------------------- 499 (741)
T ss_pred ecccc--ccccceeeeccCCcceeeeccCCCceeeEEeeccccCCccc--------------------------------
Confidence 22222 45577899999999999999999999888777777655431
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC--CeEEEEEECCEEccCCCc--EEEEEeCCEEEEEEccCCCCCcEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP--TMRFEWFVNGVELKMGSR--FHVQHDFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.+..+.....|.++.+.|.. ...| .-.+.|.+.|.+...... -....-.....+.+......-+|.|.|
T Consensus 500 -----~~~~~~~~~~~ns~~~~~~q--~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 572 (741)
T KOG3515|consen 500 -----HLQDQVEGATGNSVDGECMQ--DEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETAC 572 (741)
T ss_pred -----ccccccccCCCCcccceeec--cccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEE
Confidence 11223456678889999998 4555 447999999987643211 000111223357777777777899999
Q ss_pred EEEeCCcceEEEEEEEEEeCC
Q psy2145 712 KAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 712 ~A~N~~G~~~~s~~l~V~~~p 732 (808)
.|.|..--+.....|.+...+
T Consensus 573 ~~d~~~~pA~~~~~l~~~s~~ 593 (741)
T KOG3515|consen 573 VVDGSSPPAGLSLVLKAYSAL 593 (741)
T ss_pred eecCCCCccccceEEEecccc
Confidence 999933334444455554443
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=145.63 Aligned_cols=96 Identities=21% Similarity=0.365 Sum_probs=86.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+. ...+..|+.++|.|.+ .|.|+|.|.|+|||++|..+.++++......+.|.|.++..+|+|.|+|.|+|
T Consensus 1 p~~~~~p~-~~~v~~G~~v~l~C~~--~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPE-DMKVRAGESVELFCKV--TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCc-CEEEECCCEEEEEEEE--cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 44555444 3678999999999999 89999999999999999988889888777788999999999999999999999
Q ss_pred CCcceEEEEEEEEEeCCCc
Q psy2145 716 RAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 716 ~~G~~~~s~~l~V~~~p~~ 734 (808)
.+|....++.|.|.++|..
T Consensus 78 ~~G~~~~~~~l~V~~~P~p 96 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPDP 96 (98)
T ss_pred CCCceeEEEEEEEecCCCC
Confidence 9999999999999998853
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=136.46 Aligned_cols=95 Identities=16% Similarity=0.389 Sum_probs=86.4
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.|+..+.+. .+..|+.+.|.|.+ .|.|.+.+.|+|||++|..+.++.+......+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~-~v~~G~~v~l~C~~--~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDM-KVRAGESVELFCKV--TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCE-EEECCCEEEEEEEE--cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 5677777776 68999999999999 89999999999999999888888887766677999999999999999999999
Q ss_pred CCeeEEEEEEEEEEeccc
Q psy2145 584 ALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 584 ~~G~~~~s~~l~V~~~~~ 601 (808)
..|...++++|.|.+.|.
T Consensus 78 ~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred CCCceeEEEEEEEecCCC
Confidence 999999999999998764
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=134.90 Aligned_cols=87 Identities=28% Similarity=0.480 Sum_probs=76.6
Q ss_pred eecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 640 QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 640 ~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
..++....+.+|++++|.|.+ .|.|.|.|.|+|||.++..++++.+..+ +...+|.|.++..+|+|.|+|.|+|.+|
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTV--FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEE--EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 334444678899999999999 7999999999999999998888887655 4567899999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy2145 719 EAVSSTSLKV 728 (808)
Q Consensus 719 ~~~~s~~l~V 728 (808)
.++.++.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9999998876
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=130.26 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=73.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+.+.|.|.+ .|+|.|.|.|+|+|+++..+ .++.+......++|.|.++..+|+|.|+|.|.|.+|+++.++
T Consensus 5 ~~v~~G~~v~l~c~~--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 5 IVVVAGNKLRLDVPI--SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEcCCEEEEEeeE--eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 467899999999999 89999999999999999864 578877766778999999999999999999999999999999
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8876
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=126.08 Aligned_cols=73 Identities=29% Similarity=0.447 Sum_probs=65.0
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|.|.|.+ .|.|.|.|.|+|||..|.. ++++.+..+ .+..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI--SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE--EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999 7999999999999999974 467777654 45568999999999999999999999999999999976
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=131.44 Aligned_cols=87 Identities=20% Similarity=0.340 Sum_probs=75.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+.+ ..+.+|+.++|.|.+ .|+|.|.|+|+|+|.++..+.++.+ +++ .|.|.++..+|+|.|+|.|.|
T Consensus 2 p~i~~~~~~-~~~~~G~~v~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 2 ADINVKFKD-TYALKGQNVTLECFA--LGNPVPVIRWRKILEPMPATAEISM--SGA--VLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CceEEcccc-EEEeCCCcEEEEEEe--cccCCCEEEEEECCcCCCCCCEEec--CCC--EEEECcCChhhCEEEEEEEEc
Confidence 677777765 568899999999999 8999999999999998876554433 333 799999999999999999999
Q ss_pred CCcceEEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKVK 729 (808)
Q Consensus 716 ~~G~~~~s~~l~V~ 729 (808)
.+|.++.++.|.|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (88)
T cd05851 75 IKGKDKHQARVYVQ 88 (88)
T ss_pred CCCceEEEEEEEEC
Confidence 99999999999884
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=130.33 Aligned_cols=90 Identities=34% Similarity=0.663 Sum_probs=83.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+. ...+.+|+++.|.|.+ .|.|.|.|.|++||..|..+.++.+..+++.++|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~-~~~v~~G~~~~l~c~~--~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPK-DVTVKEGESVTLECEV--SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESS-EEEEETTSEEEEEEEE--EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecC-CEEEeCCCEEEEEEEE--EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 55666664 4789999999999999 68899999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
..|..+.++.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999987
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=129.86 Aligned_cols=90 Identities=22% Similarity=0.368 Sum_probs=80.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+. ...+.+|+.++|.|.+ .|.|.|.+.|+|+|..+..+.++.+......++|.|.++..+|+|.|+|.|+
T Consensus 3 ~~~~~~~p~-~~~~~~G~~~~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKPR-SLTVSEGESARFSCDV--DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccCc-cEEEeCCCcEEEEEEE--eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 466666654 3679999999999999 8999999999999999998888888777777899999999999999999999
Q ss_pred eCCcceEEEEEEE
Q psy2145 715 NRAGEAVSSTSLK 727 (808)
Q Consensus 715 N~~G~~~~s~~l~ 727 (808)
|.+|.++.++.|+
T Consensus 80 N~~G~~~~~~~l~ 92 (92)
T cd05747 80 NSEGKQEAQFTLT 92 (92)
T ss_pred cCCCCEeEEEEeC
Confidence 9999999988874
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=123.79 Aligned_cols=73 Identities=30% Similarity=0.454 Sum_probs=67.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+..++ +|.|.++..+|+|.|+|.|+|.+|.+..++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP--KAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec--ceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7889999999 89999999999999999888888875433 7999999999999999999999999999999976
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=123.76 Aligned_cols=73 Identities=30% Similarity=0.490 Sum_probs=64.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeC-CEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+|.|.+ .|.|.|.|.|+|+|.++.. ..++.+..++ +..+|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV--SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999 8999999999999999975 4567775543 5568999999999999999999999999999999976
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=130.36 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=71.4
Q ss_pred ccccCCceEEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEEEEEeC-----CEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQHDF-----GYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..+.+|++++|.|.+ .| .|+|.|.|+|||.+|..+..+.+...+ ..++|.|.++..+|+|.|+|.|+|..|.
T Consensus 13 ~~v~~G~~v~L~c~v--~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 13 IFVNLGENLNLVVEV--EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEE--EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 468899999999999 79 999999999999999876555443332 2468999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
++.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999986
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-16 Score=124.20 Aligned_cols=74 Identities=31% Similarity=0.542 Sum_probs=66.6
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
||+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+... .+|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA--QGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC--CEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 69999999999 8999999999999999987766655433 38999999999999999999999999999999876
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=121.58 Aligned_cols=74 Identities=28% Similarity=0.453 Sum_probs=68.7
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++.|.|.+ .|.|.|.|.|+|||..+..+.++.+......+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI--SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE--eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999 899999999999999998888888877777889999999999999999999999999999999876
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=126.46 Aligned_cols=88 Identities=20% Similarity=0.450 Sum_probs=76.9
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
||.|...+.+. .+.+|+.+.|.|.+ .|.|.|.|+|+|++.++....++.. .++ .|.|.++..+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFA--LGNPVPVIRWRKILEPMPATAEISM--SGA--VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEe--cccCCCEEEEEECCcCCCCCCEEec--CCC--EEEECcCChhhCEEEEEEEE
Confidence 58888888887 68899999999999 8999999999999998876544332 333 79999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|....++.|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999999999874
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=123.36 Aligned_cols=81 Identities=30% Similarity=0.443 Sum_probs=70.4
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEe----CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHD----FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
|+.++|.|.+ .|.|++.|.|+|+|..+..+ .+|.+... ...++|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 1 g~~~~l~C~~--~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTA--HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEE--ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999 79999999999999998654 46765431 12368999999999999999999999999999999
Q ss_pred EEEEeCCC
Q psy2145 726 LKVKSKSD 733 (808)
Q Consensus 726 l~V~~~p~ 733 (808)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 99998875
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=119.34 Aligned_cols=73 Identities=29% Similarity=0.450 Sum_probs=64.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++|.|.+ .|.|.|.|.|+|||..|.. ..++.+..+ .+..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~L~C~v--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV--SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE--eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 5799999 8999999999999999984 457766543 45668999999999999999999999999999999876
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=120.82 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=66.6
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccC---CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKM---GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~---~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
+++.|.|.+...+.+++.|.|+|||++|.. +.+|.+... .....|.|.+++..|+|.|+|.|+|.+++.+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999544566899999999999962 345554321 1224899999999999999999999999999999999
Q ss_pred EEeCC
Q psy2145 728 VKSKS 732 (808)
Q Consensus 728 V~~~p 732 (808)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99987
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=126.63 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=70.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe------CCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD------FGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..+..|+.+.|.|.+ .|+|+|.|.|+|||.+|..+.+..+... ...++|.|.++..+|+|.|+|.|+|..|.
T Consensus 13 ~~~~~~~~~~l~~~v--~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 13 EFANLHEVKEFVVEV--EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEEecCCcEEEEEEE--EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 467889999999999 7999999999999999987665443321 12368999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999986
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=123.68 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=70.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.+.|.|.+ .|.|.|.|.|++||..+..+............+|.|.++..+|.|.|+|.|+|.+|.+..++.
T Consensus 10 ~~v~~G~~v~l~C~~--~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 10 TVVYEGGTATIRCTA--EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred EEEcCCCcEEEEEEE--EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 448899999999999 799999999999999987665544444455679999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 88 L~v 90 (90)
T cd04972 88 VTV 90 (90)
T ss_pred EeC
Confidence 875
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=124.11 Aligned_cols=88 Identities=25% Similarity=0.501 Sum_probs=75.3
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
+..+++...+.+|+++.|.|.+ .|.|.|.+.|+|+|.++..+.++.+... +...+|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~lp~~v~v~~G~~v~L~C~v--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 4 VGGLPDVVTIMEGKTLNLTCTV--FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred eccCCceEEEeCCCcEEEEEEE--EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence 3444454578999999999999 8999999999999999988888776644 445689999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|..+..+.|.|
T Consensus 82 G~~~~~~~v~v 92 (92)
T cd05737 82 GGETVDVTVSV 92 (92)
T ss_pred CcceEEEEEeC
Confidence 99998888765
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=121.04 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=65.8
Q ss_pred ceEEEEEEEeeCCCCCe--EEEEEECCEEccCC---CcEEE-EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTM--RFEWFVNGVELKMG---SRFHV-QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p--~i~W~~~g~~l~~~---~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
++++|.|.+ .|+|.| .|.|+|||.+|... .++.. ......++|.|.+++.+|+|.|+|.|.|.+|+.++++.
T Consensus 1 ~~~~L~C~a--~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA--SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 468999999 799987 68999999998643 34432 22223468999999999999999999999999999999
Q ss_pred EEEEeCC
Q psy2145 726 LKVKSKS 732 (808)
Q Consensus 726 l~V~~~p 732 (808)
|.|.++|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999876
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-15 Score=124.03 Aligned_cols=90 Identities=34% Similarity=0.731 Sum_probs=84.1
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.|...+.++ .+.+|+++.|.|.+ .|.|.+.+.|+++|..+..+.++.+...++.++|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~-~v~~G~~~~l~c~~--~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDV-TVKEGESVTLECEV--SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEE-EEETTSEEEEEEEE--EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCE-EEeCCCEEEEEEEE--EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 6788888777 69999999999999 68899999999999999999999999888999999999999999999999999
Q ss_pred CCeeEEEEEEEEE
Q psy2145 584 ALGEAVTTASMKI 596 (808)
Q Consensus 584 ~~G~~~~s~~l~V 596 (808)
..|..+.++.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-15 Score=117.64 Aligned_cols=71 Identities=28% Similarity=0.560 Sum_probs=64.0
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++.|.|.+ .|.|.|.|+|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|.+|++++++.|.|
T Consensus 1 ~v~l~C~~--~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV--TGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE--EEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999 79999999999999999888888776554 4888899999999999999999999999999976
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-15 Score=125.56 Aligned_cols=90 Identities=28% Similarity=0.495 Sum_probs=74.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEE--CCEEccC-----CCcEEEEEeCCEEEEEEccCCCCCcE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVELKM-----GSRFHVQHDFGYVTLDITKCVPADSG 707 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G 707 (808)
+|.+.. +. ...+.+|+.++|.|.+ .|.|.|.|.|+| +|..+.. +.++.+....+..+|+|.++..+|+|
T Consensus 2 ~p~i~~-~~-~~~~~~G~~v~l~C~~--~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LK-NETTVENGAATLSCKA--EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-ec-cEEEcCCCcEEEEEec--ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 466654 33 3678999999999999 899999999999 5655542 34677765556679999999999999
Q ss_pred EEEEEEEeCCcceEEEEEEEE
Q psy2145 708 VYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 708 ~Y~C~A~N~~G~~~~s~~l~V 728 (808)
.|+|.|.|.+|.+..++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999999998875
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=123.48 Aligned_cols=89 Identities=25% Similarity=0.435 Sum_probs=80.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
||.|+.++.+. .+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+..+.++.+.......+|.|.++..+|+|.|+|.|+
T Consensus 3 ~~~~~~~p~~~-~~~~G~~~~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKPRSL-TVSEGESARFSCDV--DGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccCccE-EEeCCCcEEEEEEE--eecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 78888888776 69999999999999 8999999999999999988888877766556789999999999999999999
Q ss_pred eCCeeEEEEEEE
Q psy2145 583 NALGEAVTTASM 594 (808)
Q Consensus 583 N~~G~~~~s~~l 594 (808)
|..|..+.++.|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999999888776
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-15 Score=117.47 Aligned_cols=73 Identities=27% Similarity=0.489 Sum_probs=63.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|.|+|.+ .|.|.|.|+|+|||+.|.. +.++.+..+ .+.++|.|.++..+|+|.|+|.|.|..|++++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI--SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE--EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999 8999999999999999974 456666543 45568999999999999999999999999999999876
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=123.13 Aligned_cols=81 Identities=32% Similarity=0.549 Sum_probs=69.0
Q ss_pred ccccCCceEEEEEEEeeCCCCC-eEEEEEE-CCEEccC-CCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCC-cce
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPT-MRFEWFV-NGVELKM-GSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAINRA-GEA 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~-p~i~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~-G~~ 720 (808)
..+.+|+.++|.|.+ .|.|. |.|.|++ ||..+.. +.++.+.. +...++|.|.++..+|+|.|+|.|+|.+ |.+
T Consensus 10 ~~v~~G~~v~l~C~v--~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~ 87 (96)
T cd05865 10 GEISVGESKFFLCQV--AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGES 87 (96)
T ss_pred cEECCCCeEEEEEEE--eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcE
Confidence 468889999999999 79995 7999998 8988766 44665543 3345799999999999999999999997 999
Q ss_pred EEEEEEEE
Q psy2145 721 VSSTSLKV 728 (808)
Q Consensus 721 ~~s~~l~V 728 (808)
+.++.|.|
T Consensus 88 ~~s~~l~v 95 (96)
T cd05865 88 EATVNVKI 95 (96)
T ss_pred EEEEEEEE
Confidence 99999987
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=122.84 Aligned_cols=77 Identities=36% Similarity=0.645 Sum_probs=69.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.++|.|.+ .|.|.|.+.|+|||.++..+.++.+. ++ .|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 9 ~~~~~G~~~~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 9 TEADIGSSLRWECKA--SGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred cEEcCCCcEEEEEEe--eEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 568899999999999 79999999999999999887777653 33 7999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 876
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=124.74 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=71.1
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+..|+.+.|.|.+ .|.|.|.|.|+|+|..+... .++.+..+ .+.|+|.++..+|+|.|+|.|.|.+|..+.++
T Consensus 13 ~~~~~G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 13 ATANLGQSVTLACDA--DGFPEPTMTWTKDGEPIESGEEKYSFNED--GSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred eEEeCCCCEEEEEec--cEeCCCEEEEEECCEECcCCCCEEEEeCC--CCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 357899999999999 89999999999999999875 45544332 34799999999999999999999999999999
Q ss_pred EEEEEeC
Q psy2145 725 SLKVKSK 731 (808)
Q Consensus 725 ~l~V~~~ 731 (808)
.|.|..+
T Consensus 89 ~L~V~~~ 95 (95)
T cd05730 89 HLKVFAK 95 (95)
T ss_pred EEEEEeC
Confidence 9999754
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-15 Score=119.04 Aligned_cols=77 Identities=27% Similarity=0.483 Sum_probs=70.3
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|+++.|.|.+ .|.|.|.|.|++||..+..+.++.+...++...|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVA--TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEE--EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 7899999999 7999999999999999988888888777778899999999999999999999999999888777653
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=124.61 Aligned_cols=91 Identities=22% Similarity=0.363 Sum_probs=74.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-----CcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-----SRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
+|.|...... ..+..|+.++|.|.+ .|.|.|.|+|+++|..+... .++.+..+...+.|.|.++..+|+|.|
T Consensus 2 ~p~i~~~~~~-~~~~~g~~v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQ-TAMELEEQITLTCEA--SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCc-eEEEcCCCEEEEEEe--eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 4666655432 345568999999999 79999999999999887543 345555555567999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy2145 710 MCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V 728 (808)
+|.|.|.+|.++.++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999999876
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=117.88 Aligned_cols=74 Identities=32% Similarity=0.596 Sum_probs=63.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.++|.|.+ .|.|.|.|+|+|||.++...... .+....+ +|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~v~l~C~~--~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV--EGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe--eEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999 79999999999999998764321 2222233 7999999999999999999999999999999987
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=121.95 Aligned_cols=82 Identities=27% Similarity=0.552 Sum_probs=72.6
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-CEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
...+.+|+.+.|.|.+ .|.|.|.+.|||+|..+..+.++.+.... ..++|.|.++..+|+|.|+|.|.|.+|.+..+
T Consensus 10 ~v~v~eG~~v~L~C~v--~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 10 VVTIMEGKTLNLTCTV--FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred cEEEcCCCEEEEEEEE--EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 3568899999999999 79999999999999999888887765433 35689999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 98875
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=114.59 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=57.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.|+|||||++|... .....|.|.++..+|+|.|+|.|+|.+|..+.+.+|+|.
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKV--AAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEE--EEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999 79999999999999999632 123489999999999999999999999988888887764
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=119.50 Aligned_cols=80 Identities=24% Similarity=0.474 Sum_probs=71.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+.+.|.|.+ .|.|.|.+.|+|+|.++... .++.+........|.|.++..+|+|.|+|.|.|..|+...++.
T Consensus 6 ~v~~G~~v~l~c~~--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 6 VVVAGNKLRLDVPI--SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEcCCEEEEEeeE--eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 58899999999999 89999999999999999764 4677666555668999999999999999999999999998888
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 865
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=117.87 Aligned_cols=74 Identities=27% Similarity=0.482 Sum_probs=63.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.++|.|.+ .|+|.|.|+|+|||+++...... ....+++ .|.|.++..+|+|.|+|.|+|.+|...+++.|.|
T Consensus 1 g~~~~l~C~a--~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA--NGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEe--eEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7889999999 89999999999999999754321 1222333 7999999999999999999999999999999987
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=119.83 Aligned_cols=80 Identities=25% Similarity=0.558 Sum_probs=70.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-EEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSS 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~s 723 (808)
..+.+|++++|.|.+ .|.|. .|.|++ +|..+..+.++.+..++..++|.|.++..+|+|.|+|.|+|.+|.. ..+
T Consensus 10 ~~v~~G~~v~l~C~~--~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 10 VELSVGESKFFTCTA--IGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred eEEcCCCeEEEEEEE--EEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 568899999999999 79998 999998 6888888888888777777899999999999999999999999986 556
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 87 i~l~~ 91 (92)
T cd05866 87 VVLEI 91 (92)
T ss_pred EEEEE
Confidence 67665
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-15 Score=124.26 Aligned_cols=90 Identities=27% Similarity=0.414 Sum_probs=74.4
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-----CcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-----SRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
+|.|.. +. ...+.+|+.++|.|.+ .|.|.|.|.|+++|..+... .++.+......+.|.|.++..+|+|.|
T Consensus 2 ~P~i~~-~~-~~~~~~g~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKITY-LE-NQTAVELEQITLTCEA--EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Ccccee-cC-ceeEecCCcEEEEEEE--eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 466643 33 2578899999999999 79999999999999777643 355555555667999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy2145 710 MCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V 728 (808)
+|.|.|.+|.++.++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999999998875
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=121.04 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=68.5
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
....+.+|+.++|.|.+ .|+|.|+|.|+|+|..+.....+. ..+ ..|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 9 ~~~~~~~g~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~--~~~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 9 KDTYALKGQNVTLECFA--LGNPVPQIKWRKVDGSMPSSAEIS--MSG--AVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CceEEeCCCcEEEEEEe--eEeCCCEEEEEECCCcCCCccEEE--EeC--CEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 34568899999999999 799999999999998776654443 222 389999999999999999999999999999
Q ss_pred EEEEEE
Q psy2145 724 TSLKVK 729 (808)
Q Consensus 724 ~~l~V~ 729 (808)
+.|.|.
T Consensus 83 ~~l~V~ 88 (88)
T cd04968 83 GRIYVQ 88 (88)
T ss_pred EEEEEC
Confidence 999873
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=119.11 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=68.6
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.+.. +.......+|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 5 ~v~~G~~~~L~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPA--AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEc--CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 47789999999999 899999999999999998765542 222234458999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 876
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-15 Score=115.81 Aligned_cols=73 Identities=27% Similarity=0.497 Sum_probs=66.3
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.|+|+|++..+..+.++.+..++ +|.|.+++.+|+|.|+|.|.|..|+...++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP--KAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec--ceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7889999999 89999999999999998888888775443 7999999999999999999999999999999875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=115.26 Aligned_cols=73 Identities=26% Similarity=0.554 Sum_probs=63.5
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeC-cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDF-GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|.|+|.+ .|.|.|.|+|+|+|.++..+ .++.+..++ +..+|.|.++..+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 v~l~C~v--~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV--SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999 89999999999999999753 566665443 5557999999999999999999999999999999876
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=115.32 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=60.0
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE--E---eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ--H---DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
.|.|.| .|+|.|.|+|||||++|..+.++... . ....++|.|.++..+|+|.|+|+|+|.+|+++.++.+.
T Consensus 2 ~i~~~v--~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTV--KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEE--eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999 89999999999999999877665332 1 12356899999999999999999999999999888775
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=123.75 Aligned_cols=82 Identities=27% Similarity=0.489 Sum_probs=69.2
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe----CCEEEEEEccCC-CCCcEEEEEEEEeCCcceEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD----FGYVTLDITKCV-PADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~----~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~s 723 (808)
.|..++|.|.+ .|.|.|.|.|+|||..|.. +.++.+... ...++|.|.++. .+|.|.|+|.|.|.+|.++.+
T Consensus 22 ~g~~v~L~C~a--~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 22 GSSDANLVCQA--QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred CCCEEEEEEEC--cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 57899999999 7999999999999999974 346654321 114689999997 599999999999999999999
Q ss_pred EEEEEEeCCC
Q psy2145 724 TSLKVKSKSD 733 (808)
Q Consensus 724 ~~l~V~~~p~ 733 (808)
+.|.|..+|+
T Consensus 100 i~L~~~~~p~ 109 (109)
T cd05773 100 IQLVSTSRPD 109 (109)
T ss_pred EEEEecCCCC
Confidence 9999998874
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=116.09 Aligned_cols=73 Identities=30% Similarity=0.416 Sum_probs=66.5
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+..++ +|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP--KAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee--eEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7889999999 79999999999999999888888765432 6999999999999999999999999999999876
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=120.92 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=69.5
Q ss_pred cccCCCceEEEEEEeeCC-CCCcEEEEEECCEecCCCCCeEEEeeC-----cEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 515 AVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDF-----GYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g-~P~~~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
.+.+|+.+.|.|.+ .| .|+|.+.|+|||.+|...........+ ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 14 ~v~~G~~v~L~c~v--~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 14 FVNLGENLNLVVEV--EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEECCCCEEEEEEE--EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 68899999999999 78 999999999999999865554333221 13579999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2145 589 VTTASMKIK 597 (808)
Q Consensus 589 ~~s~~l~V~ 597 (808)
+.++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999986
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=115.95 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=60.5
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-------CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-------FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
.|.|.+ .|.|.|.|+|||||++|..+.++.+... ...+.|.|.++..+|+|.|+|.|+|.+|.+++++.|.
T Consensus 2 ~i~~~v--~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTV--RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEe--EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999 7999999999999999988765543221 2356899999999999999999999999999988875
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=119.39 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=64.7
Q ss_pred CeEEeecCCCcc--ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCC-CCCcEEEEEE
Q psy2145 636 PIFTQLLTGTSE--IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV-PADSGVYMCK 712 (808)
Q Consensus 636 P~~~~~~~~~~~--v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 712 (808)
|.|+..+.+... ..+|+.++|.|.+ .|.|.|.|+|+|||.+|.....+++...++ +|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA--RGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe--eecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEE
Confidence 566666554221 1358999999999 899999999999999997655444443344 78999885 6999999999
Q ss_pred EEeCCcceEE
Q psy2145 713 AINRAGEAVS 722 (808)
Q Consensus 713 A~N~~G~~~~ 722 (808)
|+|.+|...+
T Consensus 78 A~N~~G~~~S 87 (94)
T cd05848 78 ATNSIGSILS 87 (94)
T ss_pred EEcCCCeEEe
Confidence 9999998855
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=116.02 Aligned_cols=74 Identities=28% Similarity=0.550 Sum_probs=65.5
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+|+.+.|.|.+ .|.|.|.|+|+|+|..+....++.+... + +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~-~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA--QGYPQPVIAWTKGGSQLSVDRRHLVLSS-G--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC--CEecCCEEEEEECCEECCCCCCeEEccC-C--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 68999999999 8999999999999999987666554333 3 7999999999999999999999999999998875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=116.01 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=64.0
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.++|.|.+ .|.|.|.|.|++||..+...... .... ....|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~i~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA--EGIPQPTITWRLNGVPIEELPPDPRRRV--DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc--eeeCCCEEEEEECCEECCCCCCcceEEc--cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999 89999999999999999765433 2222 2248999999999999999999999999999999987
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=117.24 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=66.4
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS- 722 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~- 722 (808)
+...+.+|++++|.|.+ .|. .|.|.|+|||..+.. .++.+..+++ +|.|.++..+|+|.|+|.|.|.+|...+
T Consensus 11 ~~~~v~~g~~v~l~C~a--~g~-~p~i~W~kng~~l~~-~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 11 GNQPPEDNQPVTLTCEA--EGQ-ATYIWWVNNGSLLVP-PRLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred CccccccCCcEEEEEEe--CCC-CCEEEEEECCEECCC-CCEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEee
Confidence 34578999999999999 799 999999999999865 4555544433 7999999999999999999999998655
Q ss_pred EEEEEE
Q psy2145 723 STSLKV 728 (808)
Q Consensus 723 s~~l~V 728 (808)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 667776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=114.45 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=61.9
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
|+|.|.+ .|.|.|.|.|+|+|..+..+.++.+..+ ..|.|.++..+|+|.|+|.|.|.+|.++.++.|+
T Consensus 1 v~L~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSA--QGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecc--eEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 5799999 7999999999999999988888776543 3899999999999999999999999999988873
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=117.28 Aligned_cols=84 Identities=24% Similarity=0.599 Sum_probs=72.5
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+..+.+. .+.+|+.+.|.|.+ .|.|.|.+.|+|+|.++....++... ++ .|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~~~~p~~~-~~~~G~~~~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05728 2 WLKVISDT-EADIGSSLRWECKA--SGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKH 74 (85)
T ss_pred ccccCCcc-EEcCCCcEEEEEEe--eEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCC
Confidence 44455555 68899999999999 89999999999999999877776553 33 79999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|....++.|.|
T Consensus 75 G~~~~~~~l~V 85 (85)
T cd05728 75 GTIYASAELAV 85 (85)
T ss_pred CeEEEEEEEEC
Confidence 99999988875
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-14 Score=113.30 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=60.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.+.|+|||.+|..+.++.. . ..+|.|.++..+|+|.|+|.|.|.+|..+.++++.|.
T Consensus 1 ~~l~c~v--~g~P~p~v~W~k~g~~l~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKV--KAYPPPEIQWYKNGKLISEKNRTKK--S--GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEEc--C--CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 5799999 7999999999999999987755432 2 2489999999999999999999999998888888764
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-14 Score=112.14 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=67.0
Q ss_pred ceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.+.|.|.+ .|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI--SGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE--eeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999 899999999999999998778887776666778999999999999999999999999999988875
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-14 Score=119.29 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=69.9
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee------CcEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD------FGYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
..+..|+.+.|.|.+ .|.|+|.+.|+|||++|..+.+...... ....+|.|.++..+|+|.|+|.|.|..|+
T Consensus 13 ~~~~~~~~~~l~~~v--~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 13 EFANLHEVKEFVVEV--EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEEecCCcEEEEEEE--EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 367889999999999 8999999999999999987665433211 12347999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2145 588 AVTTASMKIK 597 (808)
Q Consensus 588 ~~~s~~l~V~ 597 (808)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999986
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=116.47 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=71.9
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
+.++.+. .+.+|+.+.|.|.+ .|.|.|.++|++||..+................|.|.++..+|.|.|+|.|.|..|
T Consensus 4 v~~p~~~-~v~~G~~v~l~C~~--~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G 80 (90)
T cd04972 4 VDGPNAT-VVYEGGTATIRCTA--EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG 80 (90)
T ss_pred ccCCcCE-EEcCCCcEEEEEEE--EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence 3344444 48899999999999 79999999999999988766554333334455899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 587 EAVTTASMKI 596 (808)
Q Consensus 587 ~~~~s~~l~V 596 (808)
+...++.|.|
T Consensus 81 ~~~~~~~L~v 90 (90)
T cd04972 81 QANVSVQVTV 90 (90)
T ss_pred ceeEEEEEeC
Confidence 9999988865
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=111.80 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=58.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.|.|||||++|..+.++. .+ ..|.|.++..+|+|.|+|.|.|.+|..+.+.++.+.
T Consensus 1 ~~~~c~v--~G~P~P~v~W~k~g~~l~~~~~~~---~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKY--YGYPPPEVKWYKNGQLIVLNHTFK---RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEc---cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4789999 799999999999999998654432 12 379999999999999999999999988887776654
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-14 Score=115.85 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=64.9
Q ss_pred ceEEEEEEEeeCCCCCe--EEEEEECCEEccCC---CcEE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTM--RFEWFVNGVELKMG---SRFH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p--~i~W~~~g~~l~~~---~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
+++.|.|.+ .|+|.| .+.|+|||.+|... .++. ........+|.|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 1 e~~~L~C~~--~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHA--SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999 788877 67999999998643 2332 112223458999999999999999999999999999999
Q ss_pred EEEEeCC
Q psy2145 726 LKVKSKS 732 (808)
Q Consensus 726 l~V~~~p 732 (808)
|.|.++|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999876
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-14 Score=114.72 Aligned_cols=76 Identities=26% Similarity=0.505 Sum_probs=66.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.+.|.|.+ .|. .+.|.|+|||++|..+.++.+.. + +|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~~~G~~v~l~C~~--~~~-~~~v~W~k~g~~l~~~~~~~~~~--~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 4 YSAHPGDLLQLRCRL--RDD-VQSINWTKDGVQLGENNRTRITG--E--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred EEecCCCCEEEEEEe--cCC-CceEEEeeCCcCCCCCceEEEeC--C--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 457899999999999 676 56899999999999888877642 2 7999999999999999999999999988888
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 775
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=119.77 Aligned_cols=90 Identities=29% Similarity=0.466 Sum_probs=68.7
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-----CcEEEEEeCCEEEEEEc--cCCCCCcEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-----SRFHVQHDFGYVTLDIT--KCVPADSGV 708 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I~--~v~~~D~G~ 708 (808)
|.|...+.+ ..+.+|+.++|.|.+ .|+|.|.|.|+|||..+... .+..+..++....+.|. .+..+|+|.
T Consensus 2 P~i~~~p~~-~~v~~G~~~~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 2 PRIVEHPSD-LIVSKGDPATLNCKA--EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CeEEecCce-eEEcCCCeEEEEeeC--CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 667766654 678899999999999 89999999999999998762 22222333333344443 346899999
Q ss_pred EEEEEEeCCcc-eEEEEEEEE
Q psy2145 709 YMCKAINRAGE-AVSSTSLKV 728 (808)
Q Consensus 709 Y~C~A~N~~G~-~~~s~~l~V 728 (808)
|+|.|+|.+|. .+.++.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999999 677888876
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-14 Score=111.28 Aligned_cols=73 Identities=25% Similarity=0.476 Sum_probs=63.2
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|+|.+ .|.|.|.|.|+|||..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 v~L~C~v--~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV--SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE--eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 5799999 8999999999999999974 356665443 35567999999999999999999999999999998875
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-14 Score=113.35 Aligned_cols=71 Identities=31% Similarity=0.623 Sum_probs=58.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCC-cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+|.|.+ .|.|.|.|.|+|||.+|..+. ++.+... ..+|.|.++..+|+|.|+|.|.|.+|...++..++|
T Consensus 1 v~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHI--DGHPRPTYQWFRDGTPLSDGQGNYSVSSK--ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEe--eecCCCcEEEEECCEECCCCCccEEEeCC--CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5799999 799999999999999997654 4444332 248999999999999999999999999866555444
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-14 Score=109.91 Aligned_cols=69 Identities=29% Similarity=0.525 Sum_probs=58.9
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
|+.++|.|.+ .|.|.|.|.|+|+|.++....++.. +...|.|.++. |+|.|+|.|.|.+|....++.|+
T Consensus 1 G~~v~L~C~a--~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVA--VGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEe--eecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 7889999999 8999999999999999877665433 22379999974 89999999999999999988873
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=113.61 Aligned_cols=80 Identities=20% Similarity=0.428 Sum_probs=68.2
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEee----CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHD----FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
|+.+.|.|.+ .|.|++.++|+|++..+..+ .++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 g~~~~l~C~~--~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTA--HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEE--ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999 79999999999999988654 45554421 12257999999999999999999999999999999
Q ss_pred EEEEecc
Q psy2145 594 MKIKTKA 600 (808)
Q Consensus 594 l~V~~~~ 600 (808)
|.|...|
T Consensus 79 L~V~~~P 85 (88)
T cd05735 79 LTVQEPP 85 (88)
T ss_pred EEEeCCC
Confidence 9999764
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=116.89 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=69.3
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+..|+.+.|.|.+ .|.|.|.|.|+|+|..+... .++.....+. .|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 14 ~~~~G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 14 TANLGQSVTLACDA--DGFPEPTMTWTKDGEPIESGEEKYSFNEDGS--EMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred EEeCCCCEEEEEec--cEeCCCEEEEEECCEECcCCCCEEEEeCCCC--EEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 57899999999999 89999999999999999765 4444333332 6999999999999999999999999999999
Q ss_pred EEEEe
Q psy2145 594 MKIKT 598 (808)
Q Consensus 594 l~V~~ 598 (808)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 99875
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=117.70 Aligned_cols=90 Identities=26% Similarity=0.536 Sum_probs=72.8
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEE--CCEecCC-----CCCeEEEeeCcEEEEEECCCCCCCCE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPLED-----SSRITTKHDFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k--~g~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G 575 (808)
+|.+.. +.+. .+.+|+.++|.|.+ .|.|.|.|+|+| +|..+.. +.++.+....+..+|.|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~-~~~~G~~v~l~C~~--~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNE-TTVENGAATLSCKA--EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccE-EEcCCCcEEEEEec--ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 566654 5555 68899999999999 899999999999 4554432 24566655555568999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEE
Q psy2145 576 IYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 576 ~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.|+|.|.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999999888865
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=111.76 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=60.2
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+.|.|.+ .|.|.|.|.|+|+|..+..+. ...... ..+|.|.++..+|+|.|+|.|.|.+|.++.++.|.|+
T Consensus 1 ~~L~C~~--~G~P~P~v~W~k~~~~~~~~~-~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIA--EGLPTPEVHWDRIDGPLSPNR-TKKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCcCCCCCc-eeEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4799999 899999999999998886543 333222 3489999999999999999999999999999999884
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.9e-14 Score=116.46 Aligned_cols=76 Identities=29% Similarity=0.590 Sum_probs=65.3
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
|+.++|.|.+ .|.|.|.|.|+|+|..+ ....++.+..+ ..|+|.++..+|+|.|+|.|.|.+|....
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA--TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC--CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 7899999998 89999999999998753 23456665432 27999999999999999999999999999
Q ss_pred EEEEEEEeC
Q psy2145 723 STSLKVKSK 731 (808)
Q Consensus 723 s~~l~V~~~ 731 (808)
++.|.|.+.
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999875
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=109.59 Aligned_cols=71 Identities=27% Similarity=0.543 Sum_probs=62.9
Q ss_pred ceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.+.|.|.+ .|.|.|.++|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 ~v~l~C~~--~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV--TGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE--EEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999 89999999999999999877777765554 4888899999999999999999999999998875
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=111.41 Aligned_cols=77 Identities=27% Similarity=0.527 Sum_probs=69.0
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
|+++.|.|.+ .|.|.|.|+|++++..+....++.+...++...|.|.++..+|+|.|+|.|.|..|...+.+.+.+.
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVA--TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEE--EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 7899999999 7999999999999999988888877776677789999999999999999999999999888776654
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=114.25 Aligned_cols=86 Identities=29% Similarity=0.518 Sum_probs=63.0
Q ss_pred CeEEeecCCCcccc---CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCC-CCCcEEEEE
Q psy2145 636 PIFTQLLTGTSEIM---EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV-PADSGVYMC 711 (808)
Q Consensus 636 P~~~~~~~~~~~v~---~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 711 (808)
|.|...+.. ..+. .|+.++|.|.+ .|+|.|.|+|++||..|.......+...++ +|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~-~~~~~~~~g~~v~l~C~a--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSS-LLFPEGSPEEKVTLGCRA--RASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCC-EEecCCCCCCeEEEEeEc--eeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEE
Confidence 455555443 2333 35689999999 799999999999999997543222222333 78998865 599999999
Q ss_pred EEEeCCcceEE-EEEE
Q psy2145 712 KAINRAGEAVS-STSL 726 (808)
Q Consensus 712 ~A~N~~G~~~~-s~~l 726 (808)
.|+|.+|...+ .+.|
T Consensus 77 ~A~N~~G~~~s~~a~l 92 (94)
T cd05850 77 LAINRCGTVVSREANL 92 (94)
T ss_pred EEEcCcCcEEEEEEEE
Confidence 99999998866 4554
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=110.16 Aligned_cols=74 Identities=28% Similarity=0.570 Sum_probs=62.6
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe-EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.|+|+|||.++...... ......+ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~v~l~C~~--~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV--EGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe--eEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999 89999999999999998754321 1222233 7999999999999999999999999999999887
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-14 Score=111.78 Aligned_cols=71 Identities=31% Similarity=0.499 Sum_probs=59.3
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEcc---CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELK---MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++|.|.+ .|.|.|.|+|+|+|.... ...++.+..+++ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 a~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA--TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec--ccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999 899999999999987432 234555543333 7999999999999999999999999999999988
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=111.61 Aligned_cols=75 Identities=28% Similarity=0.408 Sum_probs=64.2
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+.|.|.+ .|.|.|.|.|+|+|..|..+.+.++........|.|.++..+|+|.|+|.|.|..|.++.++.|.|+.
T Consensus 1 ~~L~C~v--~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHA--EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEe--eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 4799999 79999999999999999876544443334445899999999999999999999999999999999963
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=113.36 Aligned_cols=85 Identities=20% Similarity=0.394 Sum_probs=71.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe-CCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~-~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
..|.++ .+.+|++++|.|.+. |.|. .++||+ +|..+..+.|+.+..++...+|.|.++..+|+|.|+|.|.|..|
T Consensus 5 ~~~~~~-~v~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G 80 (92)
T cd05866 5 ISLSKV-ELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 80 (92)
T ss_pred EEecce-EEcCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence 456677 899999999999998 4777 899998 68888888888887777677999999999999999999999999
Q ss_pred ce-EEEEEEEE
Q psy2145 133 FA-EVQATLQC 142 (808)
Q Consensus 133 ~~-~~~~~l~V 142 (808)
.. ..++.|.|
T Consensus 81 ~~~~~~i~l~~ 91 (92)
T cd05866 81 QTQEATVVLEI 91 (92)
T ss_pred cEEEEEEEEEE
Confidence 85 55666654
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=113.13 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
||.+...+.+..+.+|+.++|.|.+ .+.|.+.+.|+|++..+....... ..++ .|.|.+++.+|+|.|+|.|.|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFA--LGNPVPQIKWRKVDGSMPSSAEIS--MSGA--VLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEe--eEeCCCEEEEEECCCcCCCccEEE--EeCC--EEEECCCCcccCEEEEEEEEE
Confidence 4667778888999999999999999 588999999999988776544333 2223 899999999999999999999
Q ss_pred CceeEEEEEEEEE
Q psy2145 263 ALGQAVTSGNLLV 275 (808)
Q Consensus 263 ~~g~~~~~~~l~V 275 (808)
..|....++.|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd04968 75 IKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEEEE
Confidence 9999999999887
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=115.38 Aligned_cols=91 Identities=20% Similarity=0.462 Sum_probs=72.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-----CCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-----SRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
+|.|....... .+..|+.+.|.|.+ .|.|.|.|+|++++..+... .++.+........|.|.++..+|+|.|
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEA--SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEe--eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 46665554443 35568999999999 89999999999999877543 234444444446899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy2145 578 ICKATNALGEAVTTASMKI 596 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V 596 (808)
+|.|.|..|..+.++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999988875
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=106.58 Aligned_cols=66 Identities=12% Similarity=0.311 Sum_probs=56.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.++|+|||++|.... ....|.|.++..+|+|.|+|.|+|..|..+.+.+|.|.
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKV--AAYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEE--EEeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999 899999999999999996321 12279999999999999999999999988888777764
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=109.72 Aligned_cols=74 Identities=26% Similarity=0.539 Sum_probs=62.8
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC-eEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR-ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|+|.|+|+|+|||+++..... .....+++ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a--~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA--NGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEe--eEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7889999999 8999999999999999864322 11223333 6899999999999999999999999999999987
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=108.63 Aligned_cols=69 Identities=33% Similarity=0.557 Sum_probs=59.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
++|.|.+ .|.|.|.|.|+|+|..+.. .++.+..+ .+|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV--GGDPVPTVLWRKEDGELPK-GRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC--ccCCCCEEEEEECCccCCC-CcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5799999 8999999999999887754 45665532 27999999999999999999999999999999876
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-14 Score=116.35 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=60.7
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEEC----CEEccCCC-c-EEEEE-------eCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVN----GVELKMGS-R-FHVQH-------DFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~----g~~l~~~~-~-~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
|+.++|.|.+ .|+|.|.|+|+|+ |..+..+. . ..+.. .+....|.|.++..+|+|.|+|.|.|.+
T Consensus 1 G~~v~l~C~v--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEE--eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 7889999999 8999999999995 44443221 1 11111 1223589999999999999999999999
Q ss_pred cceEEEEEEEEE
Q psy2145 718 GEAVSSTSLKVK 729 (808)
Q Consensus 718 G~~~~s~~l~V~ 729 (808)
|.+.+++.|.|.
T Consensus 79 G~~~~sa~L~V~ 90 (90)
T cd04974 79 GPSHHSAWLTVL 90 (90)
T ss_pred CcccCCEEEEeC
Confidence 999999999883
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=109.28 Aligned_cols=73 Identities=37% Similarity=0.630 Sum_probs=63.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.|.|.|++ +|..+....++.+..+ + +|.|..+..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA--RGDPEPAIHWISPDGKLISNSSRTLVYDN-G--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc--cCcCCCEEEEEeCCCEEecCCCeEEEecC-C--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999 799999999997 7887776666655433 3 7999999999999999999999999999988875
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=112.48 Aligned_cols=87 Identities=21% Similarity=0.403 Sum_probs=70.4
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCC-eEEEEee-CCEEccC-CCceEEEe-cCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFH-NNVPIKS-GSRFTETN-NFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
.+.|.+..+.+|++++|.|.+ .+.|. +.|+|++ ||..+.. +.++.+.. +....+|.|.+++.+|+|.|+|.|+|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v--~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQV--AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred EEeCCccEECCCCeEEEEEEE--eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 346677789999999999999 57874 7999998 8877765 44555433 33446899999999999999999999
Q ss_pred Cc-eeEEEEEEEEE
Q psy2145 263 AL-GQAVTSGNLLV 275 (808)
Q Consensus 263 ~~-g~~~~~~~l~V 275 (808)
.. |....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 86 88888888876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=113.77 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=61.9
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE----CCEEccCCCc--EEEEEe-------CCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFV----NGVELKMGSR--FHVQHD-------FGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~----~g~~l~~~~~--~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
|+.++|.|.+ .|+|.|.|+|+| +|..+..+.. ..+... ....+|.|.+++.+|+|.|+|.|.|.+
T Consensus 1 G~~v~L~C~~--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKV--YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEE--ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 7899999999 799999999998 4666654332 222111 223689999999999999999999999
Q ss_pred cceEEEEEEEE
Q psy2145 718 GEAVSSTSLKV 728 (808)
Q Consensus 718 G~~~~s~~l~V 728 (808)
|.+..++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999988
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=115.24 Aligned_cols=90 Identities=24% Similarity=0.490 Sum_probs=72.7
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-----CCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-----SRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
+|.|. .+.+. .+.+|+.+.|.|.+ .|.|.|.|.|++++..+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~P~i~-~~~~~-~~~~g~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQ-TAVELEQITLTCEA--EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCce-eEecCCcEEEEEEE--eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 46664 34444 68899999999999 79999999999999776543 244444444556899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy2145 578 ICKATNALGEAVTTASMKI 596 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V 596 (808)
+|.|.|..|..+.++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999998888865
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=110.04 Aligned_cols=71 Identities=28% Similarity=0.510 Sum_probs=59.8
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEcc--CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-EEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELK--MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~s~~l~V~ 729 (808)
++|.|.+ .|.|.|.|.|+|||.++. .+.++.... ++ +|.|.++..+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus 1 a~l~C~~--~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAA--SGNPDPEITWFKDFLPVDTTSNGRIKQLR-SG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECccCCCCCEEEcC-Cc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999 899999999999999987 445655532 22 69999999999999999999999985 678888874
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=109.94 Aligned_cols=78 Identities=17% Similarity=0.382 Sum_probs=63.4
Q ss_pred CceEEEEEEeeCCCCCc--EEEEEECCEecCCC---CCeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDS---SRITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~---~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
++++|.|.+ .|+|.| .++|+|||.+|... .++.. ........|.|.+++.+|+|.|+|.|.|..|+.++++.
T Consensus 1 ~~~~L~C~a--~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA--SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 478999999 788887 68999999998643 23322 22122348999999999999999999999999999999
Q ss_pred EEEEec
Q psy2145 594 MKIKTK 599 (808)
Q Consensus 594 l~V~~~ 599 (808)
|.|..+
T Consensus 79 L~V~~~ 84 (85)
T cd05854 79 LVVRGP 84 (85)
T ss_pred EEEECC
Confidence 999864
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=108.60 Aligned_cols=73 Identities=30% Similarity=0.542 Sum_probs=65.6
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.++|+|++..+....++.....+ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP--KAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee--eEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 7889999999 79999999999999999887777765433 6999999999999999999999999999998875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=110.57 Aligned_cols=80 Identities=26% Similarity=0.478 Sum_probs=67.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE-EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|..|+...++.
T Consensus 5 ~v~~G~~~~L~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPA--AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEc--CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 57899999999999 899999999999999998665431 112223347999999999999999999999999999998
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 875
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=113.72 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=67.5
Q ss_pred ccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCC--CcEEEEEe----CCEEEEEEccCCCC-CcEEEEEEEEeCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMG--SRFHVQHD----FGYVTLDITKCVPA-DSGVYMCKAINRA 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~-D~G~Y~C~A~N~~ 717 (808)
..+.+|+.+.|.|.+ .|.|.| .|.|+++|..|..+ .++.+... +..++|.|.++..+ |.|.|+|.|.|.+
T Consensus 11 ~~~~~G~~v~L~C~~--~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 11 QYAILGDKGRVECFI--FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred EEEeCCCcEEEEEEE--cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 458899999999999 899999 69999999998764 57777654 23468999999994 5999999999999
Q ss_pred cceEEEEEE
Q psy2145 718 GEAVSSTSL 726 (808)
Q Consensus 718 G~~~~s~~l 726 (808)
|.+..++.|
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 999988876
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-13 Score=112.09 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=72.6
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEee-CCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-FGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.|..+ .+.+|+.+.|.|.+. +.|.+.+.|||+|..+..+.++.+... +...+|.|.++..+|+|.|+|.|.|..|.
T Consensus 7 ~p~~v-~v~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05891 7 LPDVV-TIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG 83 (92)
T ss_pred CCCcE-EEcCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc
Confidence 46666 899999999999998 478889999999999988777765433 33458999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2145 134 AEVQATLQC 142 (808)
Q Consensus 134 ~~~~~~l~V 142 (808)
+..++.|.|
T Consensus 84 ~~~~~~v~~ 92 (92)
T cd05891 84 ETVDVTVSV 92 (92)
T ss_pred eeeEEEEEC
Confidence 988888764
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=112.83 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=66.0
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.+..|+.++|.|.+ .|.|.|.+.|+|+|..+........ .....+|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 5 ~~~~G~~v~L~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVA--SGNPRPDITWLKDNKPLTPTEIGES--RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEe--eEeCCCcEEEEECCcCCcCCcccee--cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 45679999999999 7999999999999998876544322 2334689999999999999999999999999888888
Q ss_pred EE
Q psy2145 727 KV 728 (808)
Q Consensus 727 ~V 728 (808)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 65
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=109.01 Aligned_cols=81 Identities=9% Similarity=0.219 Sum_probs=63.9
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCC---CCCeEEEee-CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLED---SSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~---~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
+++.|.|.+...+.+.+.|.|+|||++|.. +.++..... .....|.|.+++.+|+|.|+|.|.|..++.+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999433456889999999999962 335544211 1112799999999999999999999999999999999
Q ss_pred EEecc
Q psy2145 596 IKTKA 600 (808)
Q Consensus 596 V~~~~ 600 (808)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99754
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=109.07 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=60.2
Q ss_pred EEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEE---EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 654 AHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFH---VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 654 v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
+.|.|.+ .| .|.|.+.|+|||+++..+.++. +......++|.|.++..+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~l~C~~--~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEA--TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEc--cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 4699999 78 9999999999999998765543 4444556799999999999999999999999998888753
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-13 Score=110.62 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=63.9
Q ss_pred CeEEeecCCCccccC---CceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeCCEEEEEEccCC-CCCcEEEE
Q psy2145 636 PIFTQLLTGTSEIME---GQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFGYVTLDITKCV-PADSGVYM 710 (808)
Q Consensus 636 P~~~~~~~~~~~v~~---G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~ 710 (808)
|.|...+.. ..+.+ |..+.|.|.+ .|+|.|.|+|+|||.++.. ..++.+. ++ .|.|.++. .+|+|.|+
T Consensus 2 P~f~~~P~~-~~~~~~~~~~~v~l~C~a--~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 2 PVFEEQPID-TIYPEESTEGKVSVNCRA--RANPFPIYKWRKNNLDIDLTNDRYSMV--GG--NLVINNPDKYKDAGRYV 74 (93)
T ss_pred CEEEECCCC-EEecCCccCCeEEEeCcC--ccCCCCEEEEEECCEEccCCCCeEEEE--CC--EEEECcCCcCCCCEEEE
Confidence 566665544 22333 4589999999 8999999999999999864 4455432 33 79999985 68999999
Q ss_pred EEEEeCCcceEE-EEEE
Q psy2145 711 CKAINRAGEAVS-STSL 726 (808)
Q Consensus 711 C~A~N~~G~~~~-s~~l 726 (808)
|.|+|.+|...+ .+.|
T Consensus 75 C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 75 CIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEeCcceEEEccEEE
Confidence 999999998865 4554
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=107.21 Aligned_cols=71 Identities=25% Similarity=0.378 Sum_probs=58.7
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-----eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 523 HFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-----HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 523 ~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.|.|.+ .|+|.|+|+|||||++|..+.++... ......+|.|.++..+|+|.|+|+|+|..|++..++.+.
T Consensus 2 ~i~~~v--~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTV--KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEE--eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 378999 89999999999999999877654321 112345899999999999999999999999988877664
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-13 Score=110.98 Aligned_cols=84 Identities=25% Similarity=0.459 Sum_probs=66.1
Q ss_pred CeeeecCCCcccc--cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCC-CCCCEEEEEE
Q psy2145 504 PVFTKPLQNIDAV--EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVR-AEDEGIYICK 580 (808)
Q Consensus 504 P~f~~~~~~~~~v--~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 580 (808)
|.|+..+.++... .+|+.+.|.|.+ .|.|.|.|+|+|||..|...........++ .|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA--RGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe--eecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEE
Confidence 7788877775322 257899999999 899999999999999997554433333334 68998885 6999999999
Q ss_pred EEeCCeeEEEE
Q psy2145 581 ATNALGEAVTT 591 (808)
Q Consensus 581 a~N~~G~~~~s 591 (808)
|.|..|+..+.
T Consensus 78 A~N~~G~~~S~ 88 (94)
T cd05848 78 ATNSIGSILSR 88 (94)
T ss_pred EEcCCCeEEec
Confidence 99999988653
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=107.70 Aligned_cols=71 Identities=31% Similarity=0.425 Sum_probs=59.8
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+.|.|.+ .|.|.|.|.|+|+|..+..+ +.... .....|.|.++..+|+|.|+|.|.|.+|..+.++.|.|+
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIA--EGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 4799999 79999999999999987643 33322 223489999999999999999999999999999999873
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-13 Score=106.25 Aligned_cols=68 Identities=24% Similarity=0.544 Sum_probs=60.6
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
|.|.|.+ .|.|.|.|+|+|+|.++..+.++.+..+ + .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~--~g~P~p~i~W~k~g~~~~~~~~~~~~~~-~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSA--QGDPEPTITWNKDGVQVTESGKFHISPE-G--YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecc--eEeCCCEEEEEECCEECCCCCCEEECCC-C--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999 8999999999999999988777766543 3 79999999999999999999999999988876
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-13 Score=107.00 Aligned_cols=74 Identities=27% Similarity=0.517 Sum_probs=63.3
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe-EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.|.|++||..+...... ......+ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA--EGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc--eeeCCCEEEEEECCEECCCCCCcceEEccCC--EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999 89999999999999998765432 2222223 7999999999999999999999999999999887
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=105.84 Aligned_cols=70 Identities=17% Similarity=0.372 Sum_probs=59.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.+.|+|||++|..+.++.. .+ .+|.|.++..+|+|.|+|.|.|..|..+.+.++.|.
T Consensus 1 ~~l~c~v--~g~P~p~v~W~k~g~~l~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKV--KAYPPPEIQWYKNGKLISEKNRTKK--SG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEEc--CC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 5799999 8999999999999999987754432 22 279999999999999999999999998888887764
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-13 Score=106.62 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=59.2
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-------eCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 523 HFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-------DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 523 ~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.|.|.+ .|.|.|+|+|+|||++|..+.++.... ......|.|.++..+|+|.|+|.|.|..|.++++++|.
T Consensus 2 ~i~~~v--~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTV--RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEe--EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999 899999999999999998776543321 12345799999999999999999999999999887765
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=111.91 Aligned_cols=91 Identities=23% Similarity=0.402 Sum_probs=70.3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC-----CceEEEecCceEEEEE--ccCCCCCcEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-----SRFTETNNFGFVALDI--MQCLPEDSGV 255 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~I--~~~~~~D~G~ 255 (808)
||.|...+.+..+.+|++++|.|.+ .+.|.+.|.|+|+|..+... .+.....++....+.| ..+..+|+|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKA--EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeC--CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 6889999999999999999999999 68899999999999998651 2222223333333333 3447899999
Q ss_pred EEEEEEeCcee-EEEEEEEEE
Q psy2145 256 YTCRAVNALGQ-AVTSGNLLV 275 (808)
Q Consensus 256 Y~C~a~n~~g~-~~~~~~l~V 275 (808)
|+|.|.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 556677765
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-13 Score=110.16 Aligned_cols=79 Identities=28% Similarity=0.471 Sum_probs=64.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-E
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-S 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s 723 (808)
..+.+|+++.|.|.+. .|.|.|.|.|+|+|..+.. +.++.+.. . .+|.|.++..+|+|.|+|.|.|.+|...+ .
T Consensus 6 ~~~~~G~~v~l~C~~~-~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 6 TQVAVGEMAVLECSPP-RGHPEPTVSWRKDGQPLNLDNERVRIVD-D--GNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred EEEeCCCCEEEEEECC-CCCCCCEEEEEECCEECCCCCCCEEEcc-C--CEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 4678999999999873 5899999999999999987 44555543 2 37999999999999999999999998754 5
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 55554
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=107.87 Aligned_cols=77 Identities=19% Similarity=0.434 Sum_probs=64.3
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE-EE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT-TA 592 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-s~ 592 (808)
+.+.+|+.++|.|.+ .|. .|.|.|+|||..+... ++.+..+++ +|.|.+++.+|+|.|+|.|.|..|...+ .+
T Consensus 13 ~~v~~g~~v~l~C~a--~g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 13 QPPEDNQPVTLTCEA--EGQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred cccccCCcEEEEEEe--CCC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 368999999999999 788 9999999999988653 455554444 7999999999999999999999998655 56
Q ss_pred EEEE
Q psy2145 593 SMKI 596 (808)
Q Consensus 593 ~l~V 596 (808)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 6666
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=104.76 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=58.0
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.++|+|||++|....++. .++ .|.|.++..+|+|.|+|.|.|..|..+.+.++.+.
T Consensus 1 ~~~~c~v--~G~P~P~v~W~k~g~~l~~~~~~~---~~~--~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKY--YGYPPPEVKWYKNGQLIVLNHTFK---RGV--HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEE--EEeCCCEEEEEECCEECCCCCEEc---cCC--EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4789999 899999999999999997654331 122 79999999999999999999999988877777664
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=108.86 Aligned_cols=86 Identities=24% Similarity=0.436 Sum_probs=65.0
Q ss_pred CeeeecCCCcccccCC---CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCC-CCCCEEEEE
Q psy2145 504 PVFTKPLQNIDAVEEG---KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVR-AEDEGIYIC 579 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G---~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 579 (808)
|.|...+.++. +.+| +.+.|.|.+ .|+|.|.|+|+|||..|............+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~~~-~~~~~~g~~v~l~C~a--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSSLL-FPEGSPEEKVTLGCRA--RASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCCEE-ecCCCCCCeEEEEeEc--eeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEE
Confidence 67777777663 4444 689999999 899999999999999997543222222334 68998865 599999999
Q ss_pred EEEeCCeeEEE-EEEE
Q psy2145 580 KATNALGEAVT-TASM 594 (808)
Q Consensus 580 ~a~N~~G~~~~-s~~l 594 (808)
.|+|..|...+ .+.|
T Consensus 77 ~A~N~~G~~~s~~a~l 92 (94)
T cd05850 77 LAINRCGTVVSREANL 92 (94)
T ss_pred EEEcCcCcEEEEEEEE
Confidence 99999998765 3443
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=105.75 Aligned_cols=72 Identities=25% Similarity=0.612 Sum_probs=59.0
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCC-CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
|+|.|.+ .|.|.|.|+|+|+|.++..+. ++.+....+ .|.|.++..+|+|.|+|.|.|..|...++..+.|.
T Consensus 1 v~L~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHI--DGHPRPTYQWFRDGTPLSDGQGNYSVSSKER--TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEe--eecCCCcEEEEECCEECCCCCccEEEeCCCC--EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 5799999 899999999999999997654 344433333 79999999999999999999999998766555554
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.6e-13 Score=111.22 Aligned_cols=78 Identities=29% Similarity=0.486 Sum_probs=62.2
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCc--EEEEEeCCEEEEEEccC-----CCCCcEEEEEEEEeC-C
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR--FHVQHDFGYVTLDITKC-----VPADSGVYMCKAINR-A 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~v-----~~~D~G~Y~C~A~N~-~ 717 (808)
..+.+|+++.|.|.+ .|+|.|.|.|+|||+.|....+ +.+..+ + +|.|.++ ..+|+|.|+|.|.|. .
T Consensus 9 ~~~~~g~~v~l~C~v--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~--~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 9 IVAVRGGPVVLNCSA--EGEPPPKIEWKKDGVLLNLVSDERRQQLPN-G--SLLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred eEEcCCCCEEEeeec--ccCCCCEEEEEECCeECccccCcceEEccC-C--eEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 456789999999999 8999999999999999986543 443332 3 4666666 589999999999999 9
Q ss_pred cce-EEEEEEEE
Q psy2145 718 GEA-VSSTSLKV 728 (808)
Q Consensus 718 G~~-~~s~~l~V 728 (808)
|.. +..+.|.|
T Consensus 84 G~~~s~~~~l~v 95 (95)
T cd05722 84 GSIVSRTARLTV 95 (95)
T ss_pred CcEEEeeeEEeC
Confidence 988 45677765
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=109.19 Aligned_cols=80 Identities=33% Similarity=0.600 Sum_probs=65.2
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCc-ceEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAG-EAVS 722 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~ 722 (808)
..+.+|+.+.|.|.+ .|.|. .|.|++ +|..+....++.+... ...++|+|.++..+|+|.|+|.|.|.+| ....
T Consensus 10 ~~v~~G~~~~l~C~~--~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 10 GEISVGESKFFLCQV--IGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred EEECCCCeEEEEEEe--EeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 568899999999999 78875 999998 7887776666655443 4567999999999999999999999975 4566
Q ss_pred EEEEEE
Q psy2145 723 STSLKV 728 (808)
Q Consensus 723 s~~l~V 728 (808)
++.|.|
T Consensus 87 sv~l~~ 92 (92)
T cd04977 87 TVNLKI 92 (92)
T ss_pred EEEEEC
Confidence 777654
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=102.67 Aligned_cols=69 Identities=25% Similarity=0.552 Sum_probs=57.8
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
|+.+.|+|.+ .|.|.|.|+|+|+|+++....++.. +...|.|.++. |+|.|+|.|.|..|....++.|+
T Consensus 1 G~~v~L~C~a--~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVA--VGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEe--eecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 6789999999 8999999999999999876555432 22369999874 89999999999999999888763
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=106.09 Aligned_cols=79 Identities=24% Similarity=0.479 Sum_probs=65.7
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT 269 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 269 (808)
|.+..+.+|+.++|.|.+. +. .+.|.|+|||.+|..+.++.+.. + +|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 ~~~~~~~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~~--~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~ 73 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRITG--E--EVQIKDAVPRDSGLYACVTSSPSGSDTT 73 (79)
T ss_pred CCcEEecCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEeC--C--EEEECCCChhhCEEEEEEEeCCCCcccE
Confidence 3466788999999999994 54 56899999999998777766543 2 7999999999999999999999998777
Q ss_pred EEEEEE
Q psy2145 270 SGNLLV 275 (808)
Q Consensus 270 ~~~l~V 275 (808)
.+.|.|
T Consensus 74 ~~~v~V 79 (79)
T cd04973 74 YFSVNV 79 (79)
T ss_pred EEEEeC
Confidence 776654
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-13 Score=106.94 Aligned_cols=67 Identities=28% Similarity=0.391 Sum_probs=52.0
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCC----CCcEEEEEEEEeCCcceEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP----ADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~A~N~~G~~~~ 722 (808)
++|.|.+ .|+|.|.|+|+|||.+|.......+.......+|.|..+.. +|+|.|+|.|+|.+|.+.+
T Consensus 1 i~l~C~~--~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEA--KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999 89999999999999998654322232223334788888754 7999999999999998765
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=111.47 Aligned_cols=96 Identities=22% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCeeeecCCCcccc---cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEe--e--CcEEEEEECCCC-CCC
Q psy2145 503 RPVFTKPLQNIDAV---EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKH--D--FGYVAMDLSHVR-AED 573 (808)
Q Consensus 503 ~P~f~~~~~~~~~v---~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~--~--~~~~~L~I~~v~-~~D 573 (808)
+|.|..+......+ ..|..+.|.|.+ .|.|.+.++|+|||..|... .++.... . .....|.|.++. .+|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a--~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQA--QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEEC--cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 55665554422122 256899999999 89999999999999998743 3554321 1 113579999997 589
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
.|.|+|.|.|..|....++.|.|...|
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 999999999999999999999998754
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-13 Score=108.38 Aligned_cols=73 Identities=27% Similarity=0.480 Sum_probs=58.2
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCE---E--ccCCC---cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGV---E--LKMGS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~---~--l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
|+.++|.|.+ .|.|.|.|.|+|++. . +.... ++.. ....+|.|.++..+|+|.|+|.|.|.+|.+..
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDV--TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV---TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeec--cccCCCcEEEEecCCCCcceeecCCcccCCEEE---ccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999 899999999999742 1 11111 1111 12358999999999999999999999999999
Q ss_pred EEEEEE
Q psy2145 723 STSLKV 728 (808)
Q Consensus 723 s~~l~V 728 (808)
++.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 999876
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.3e-13 Score=104.52 Aligned_cols=71 Identities=27% Similarity=0.487 Sum_probs=59.5
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+.|.|.+ .|.|.|.|.|+|++..+..+. .......+ .|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~--~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIA--EGLPTPEVHWDRIDGPLSPNR-TKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCcCCCCCc-eeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4799999 899999999999998876543 22332333 79999999999999999999999999999888873
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-13 Score=106.58 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=57.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-E
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-S 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s 723 (808)
..+.+|+.+.|.|.+ .|.|.| .|.|+|||.+|... +. ...+.|.|..+ .|+|.|.|.|+|.+|...+ .
T Consensus 8 ~~v~~G~~v~l~C~a--~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~ 77 (81)
T cd05749 8 LSVTANTPFNLTCQA--VGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRT 77 (81)
T ss_pred eEEcCCCCEEEEEEe--eeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcEEeee
Confidence 568899999999999 899999 79999999998641 11 11247999887 4889999999999997765 4
Q ss_pred EEE
Q psy2145 724 TSL 726 (808)
Q Consensus 724 ~~l 726 (808)
+.|
T Consensus 78 a~~ 80 (81)
T cd05749 78 GTV 80 (81)
T ss_pred EEe
Confidence 444
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-13 Score=103.18 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=55.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
++|.|.+ .|.|.|.+.|+|||.++..+ .++.. ++. +|.|.++..+|+|.|+|.|+|..+.......++
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~~~~~~~--~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKV--KAFPAPEVIWLKDGLPAAEKCSRYHV--DGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeE--EEcCCCeEEEEECCEECCCCCcEEEe--CCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 4799999 79999999999999998865 34432 332 799999999999999999999977666655544
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=104.55 Aligned_cols=66 Identities=33% Similarity=0.572 Sum_probs=51.0
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCC--CcEEEEEeCCEEEEEEccCCC----CCcEEEEEEEEeCCcceEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDFGYVTLDITKCVP----ADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~A~N~~G~~~~s 723 (808)
+.|.|.+ .|.|.|+|+|+|||.++... .++.+...++ +|.|..+.. .|.|.|+|.|+|.+|.+.+.
T Consensus 1 ~~l~C~a--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEA--KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 4799999 89999999999999998543 3444333333 677777664 37899999999999987664
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.8e-13 Score=109.84 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=64.2
Q ss_pred cccCCceEEEEEEEeeCC-----CCCeEEEEEECCEEccCC--CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 647 EIMEGQSAHYDCRVVPVG-----DPTMRFEWFVNGVELKMG--SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g-----~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+.+|+.+.|.|.+ .| .|.|.|.|||+|..+... .+.++...++ .|.|.++..+|+|.|+|.|+|..|.
T Consensus 10 ~v~~G~~~~L~C~~--~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 10 YVLEGEPVVIKCPL--FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEecCCCeEEECCC--CCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 46789999999998 78 689999999999765421 2233333333 8999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2145 720 AVSSTSLKV 728 (808)
Q Consensus 720 ~~~s~~l~V 728 (808)
.+.++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999998876
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=104.20 Aligned_cols=72 Identities=26% Similarity=0.547 Sum_probs=58.4
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCC----CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMG----SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
+.|.|.+. .+.|.+.+.|||||+.|... .++.+.......+|.|.++..+|+|.|+|.|+|.+|..+.++.+
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 46999983 35788999999999998643 23444444556789999999999999999999999999888764
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=103.84 Aligned_cols=71 Identities=24% Similarity=0.495 Sum_probs=58.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC---CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE---DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|.|.+ .|.|.|.|+|+|+|.... ...++.....++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~--~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA--TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec--ccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999 899999999999986432 233454444444 7999999999999999999999999999999987
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-12 Score=105.78 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=62.4
Q ss_pred CceEEEEEEeeCCCCCc--EEEEEECCEecCCCC---CeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDSS---RITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~~---~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
+++.|.|.+ .|.|.| .+.|+|||++|.... ++.. ........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 e~~~L~C~~--~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHA--SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEE--ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468999999 788877 679999999886432 2221 11122337999999999999999999999999999999
Q ss_pred EEEEec
Q psy2145 594 MKIKTK 599 (808)
Q Consensus 594 l~V~~~ 599 (808)
|.|..+
T Consensus 79 l~V~~p 84 (85)
T cd04970 79 LIVRGP 84 (85)
T ss_pred EEEECC
Confidence 999875
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=106.99 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=61.1
Q ss_pred CeEEeecCCCc--cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCC-CCcEEEEEE
Q psy2145 636 PIFTQLLTGTS--EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP-ADSGVYMCK 712 (808)
Q Consensus 636 P~~~~~~~~~~--~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 712 (808)
|.|...+.+.. ....|+.+.|.|.+ .|+|.|.|+|+|+|..+.......+....+ .|.|.++.. +|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~--~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA--RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee--eEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEE
Confidence 44555544311 13345789999999 799999999999999985433333333333 789988874 899999999
Q ss_pred EEeCCcceEE
Q psy2145 713 AINRAGEAVS 722 (808)
Q Consensus 713 A~N~~G~~~~ 722 (808)
|+|.+|.+.+
T Consensus 78 a~N~~G~~~S 87 (91)
T cd04967 78 ASNIVGTVLS 87 (91)
T ss_pred EEcCCCEEEe
Confidence 9999998765
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=103.05 Aligned_cols=73 Identities=33% Similarity=0.653 Sum_probs=61.7
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEE-CCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|+.+.|.|.+ .|.|.|.+.|++ ++..+....++..... + +|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA--RGDPEPAIHWISPDGKLISNSSRTLVYDN-G--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc--cCcCCCEEEEEeCCCEEecCCCeEEEecC-C--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999 899999999997 6777766655544333 3 6999999999999999999999999988888765
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-12 Score=104.67 Aligned_cols=85 Identities=24% Similarity=0.385 Sum_probs=67.1
Q ss_pred CCeEEeecCceeecCCC---eEEEEEEEeecCCCCeEEEEeeCCEEccC-CCceEEEecCceEEEEEccCC-CCCcEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQ---RAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETNNFGFVALDIMQCL-PEDSGVYT 257 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~---~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~ 257 (808)
+|.|...|.++.+.++. .+.|.|.+ .|.|.+.|+|+|++..+.. ..++... ++ .|.|.++. .+|+|.|+
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a--~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRA--RANPFPIYKWRKNNLDIDLTNDRYSMV--GG--NLVINNPDKYKDAGRYV 74 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcC--ccCCCCEEEEEECCEEccCCCCeEEEE--CC--EEEECcCCcCCCCEEEE
Confidence 47788888887666544 89999999 6899999999999999853 3444433 23 79999985 69999999
Q ss_pred EEEEeCceeEEE-EEEE
Q psy2145 258 CRAVNALGQAVT-SGNL 273 (808)
Q Consensus 258 C~a~n~~g~~~~-~~~l 273 (808)
|.|+|..|...+ .+.|
T Consensus 75 C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 75 CIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEeCcceEEEccEEE
Confidence 999999998765 4444
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=103.19 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=62.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+.|.|.+ .|.|.|.+.|+|+++.+..+.+..+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|+.
T Consensus 1 ~~L~C~v--~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHA--EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEe--eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 4799999 89999999999999998765433333223333799999999999999999999999999999999863
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=107.45 Aligned_cols=76 Identities=26% Similarity=0.605 Sum_probs=64.3
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEec--------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPL--------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
|+.+.|.|.+ .|.|.|.+.|+|+|..+ ....++.+... + .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~-~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA--TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT-G--DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC--CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC-C--eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 7899999998 89999999999998653 22445555433 2 6999999999999999999999999999
Q ss_pred EEEEEEEec
Q psy2145 591 TASMKIKTK 599 (808)
Q Consensus 591 s~~l~V~~~ 599 (808)
++.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999874
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=103.19 Aligned_cols=66 Identities=30% Similarity=0.472 Sum_probs=52.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEcc--CCCcEEEEEeCCEEEEEEccCCC----CCcEEEEEEEEeCCcceEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELK--MGSRFHVQHDFGYVTLDITKCVP----ADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~A~N~~G~~~~s 723 (808)
+.|.|.+ .|+|.|.|+|+|||..+. .+.++.+..+++ +|.|..+.. +|+|.|+|.|+|.+|.+.+.
T Consensus 1 ~~l~C~~--~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEA--KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEec--cccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999 899999999999999874 455666544443 788887642 47999999999999987665
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=100.98 Aligned_cols=69 Identities=32% Similarity=0.636 Sum_probs=58.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|.|.+ .|.|.|.+.|+|++..+.. .++..... + .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~-~~~~~~~~-~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV--GGDPVPTVLWRKEDGELPK-GRAEILDD-K--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC--ccCCCCEEEEEECCccCCC-CcEEEeeC-C--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 5799999 8999999999999887754 34554432 3 7999999999999999999999999999988875
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=113.01 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=83.6
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
+|.|.+++.+|+|.|.|.+.+..|.....++|.|. .+|.+..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~--------------------------------------~~P~v~~ 43 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS--------------------------------------EPPRVRL 43 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe--------------------------------------cCCceEE
Confidence 69999999999999999999988888888888884 4666766
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEcc------CCCce--EEEecCce----EEEEEccCCCCCcEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIK------SGSRF--TETNNFGF----VALDIMQCLPEDSGV 255 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~------~~~~~--~~~~~~~~----~~L~I~~~~~~D~G~ 255 (808)
.+......+|+.+.|.|.+.+ ..|. +.|.|+++|.... .+... .....+|. ..|.|......+.+.
T Consensus 44 ~~~~~~~~~~~~~~L~C~a~g-~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ 122 (139)
T cd05771 44 SLEKLVSMIEEPQTLICHIAG-YYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGAT 122 (139)
T ss_pred eCCCceeecCCcEEEEEEECC-CCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCE
Confidence 666655558999999999953 2454 6999999986422 11110 11122222 357776655556779
Q ss_pred EEEEEEeC
Q psy2145 256 YTCRAVNA 263 (808)
Q Consensus 256 Y~C~a~n~ 263 (808)
|+|++.+.
T Consensus 123 ytC~V~H~ 130 (139)
T cd05771 123 YTCRVSHV 130 (139)
T ss_pred EEEEEEcC
Confidence 99999875
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=106.65 Aligned_cols=88 Identities=22% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCC--CCeEEEee----CcEEEEEECCCCCC-CC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDS--SRITTKHD----FGYVAMDLSHVRAE-DE 574 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~-D~ 574 (808)
||.+..+ ... .+.+|+.+.|.|.+ .|.|.| .|.|++++..+... .++.+... +...+|.|.++..+ |.
T Consensus 2 pp~i~~~-~~~-~~~~G~~v~L~C~~--~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPIITSE-ATQ-YAILGDKGRVECFI--FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeEcCC-CcE-EEeCCCcEEEEEEE--cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccc
Confidence 5666543 333 57899999999999 899999 69999999988753 46666543 22357999999995 59
Q ss_pred EEEEEEEEeCCeeEEEEEEE
Q psy2145 575 GIYICKATNALGEAVTTASM 594 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l 594 (808)
|.|+|.|.|..|.+..++.|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999999888776
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=105.57 Aligned_cols=78 Identities=24% Similarity=0.510 Sum_probs=64.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+..|+.+.|.|.+ .|.|.|.+.|+|+|..+........ .....+|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 5 ~~~~G~~v~L~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVA--SGNPRPDITWLKDNKPLTPTEIGES--RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEe--eEeCCCcEEEEECCcCCcCCcccee--cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 46779999999999 7999999999999998865543322 2233589999999999999999999999998888777
Q ss_pred EE
Q psy2145 595 KI 596 (808)
Q Consensus 595 ~V 596 (808)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 64
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-12 Score=103.72 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=68.0
Q ss_pred CccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCC--CcEEEEEe----CCEEEEEEccCCCCC-cEEEEEEEEeC
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMG--SRFHVQHD----FGYVTLDITKCVPAD-SGVYMCKAINR 716 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~D-~G~Y~C~A~N~ 716 (808)
...+.+|+.++|.|.+ .++|+| .|.|.+++..|..+ .+|.+... +..++|+|.++...| .|.|.|.|.|.
T Consensus 10 s~~~~~G~~~~L~C~~--~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 10 VQYAVRGERGKVKCFI--GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred eEEEeCCCcEEEEEEE--ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 3568899999999999 688876 68999998888653 68887664 468899999998877 89999999999
Q ss_pred CcceEEEEEE
Q psy2145 717 AGEAVSSTSL 726 (808)
Q Consensus 717 ~G~~~~s~~l 726 (808)
+|.+...+.|
T Consensus 88 ~G~d~~~i~L 97 (98)
T cd05898 88 FGSGTAIIQL 97 (98)
T ss_pred CccceEEEEe
Confidence 9999988877
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=105.47 Aligned_cols=76 Identities=24% Similarity=0.391 Sum_probs=61.3
Q ss_pred CceEEEEEEEeeCCC--CCeEEEEEECCEEccCCCc----EE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 651 GQSAHYDCRVVPVGD--PTMRFEWFVNGVELKMGSR----FH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 651 G~~v~l~C~v~~~g~--P~p~i~W~~~g~~l~~~~~----~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
|+.++|.|.+ .|+ |.|.|.|+++|+.+..... .. .......++|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~--~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTV--LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEE--EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 7899999999 688 8999999998876643211 11 1112235699999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 99877
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=101.98 Aligned_cols=70 Identities=29% Similarity=0.623 Sum_probs=58.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC--CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE-EEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA-VTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~V 596 (808)
++|.|.+ .|.|.|.|+|+|++.++. ...++.... .+ .|.|.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 1 a~l~C~~--~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAA--SGNPDPEITWFKDFLPVDTTSNGRIKQLR-SG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEE--eEecCCEEEEEECCEECccCCCCCEEEcC-Cc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999 899999999999999987 345555432 33 69999999999999999999999985 66677776
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-12 Score=107.31 Aligned_cols=76 Identities=22% Similarity=0.461 Sum_probs=59.0
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECC----EecCCC-CCe-EEEe-------eCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNE----KPLEDS-SRI-TTKH-------DFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g----~~l~~~-~~~-~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+.++|.|.+ .|.|.|.|+|+|++ ..+... ... .... .+....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEE--eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 6789999999 89999999999963 333221 111 1111 1222479999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|...+++.|.|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99999999987
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-12 Score=101.59 Aligned_cols=71 Identities=23% Similarity=0.526 Sum_probs=58.9
Q ss_pred eEEEEEEeeCC-CCCcEEEEEECCEecCCCCCeE---EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 522 AHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRIT---TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 522 v~l~C~v~~~g-~P~~~v~W~k~g~~l~~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
+.|.|.+ .| .|.|.+.|+|+|+++..+.+.. +........|.|.++..+|+|.|+|.|.|..|.+..++.+
T Consensus 1 ~~l~C~~--~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEA--TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEc--cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 4799999 67 9999999999999998665432 3333455689999999999999999999999998887653
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-12 Score=104.71 Aligned_cols=76 Identities=22% Similarity=0.458 Sum_probs=60.0
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEEC----CEecCCCCC--eEEEee-------CcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRN----EKPLEDSSR--ITTKHD-------FGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~----g~~l~~~~~--~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+.+.|.|.+ .|.|.|.|+|+|+ |..+..... ...... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~--~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKV--YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEE--ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 7889999999 8999999999984 555543322 121111 122479999999999999999999999
Q ss_pred eeEEEEEEEEE
Q psy2145 586 GEAVTTASMKI 596 (808)
Q Consensus 586 G~~~~s~~l~V 596 (808)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999987
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-12 Score=100.58 Aligned_cols=70 Identities=29% Similarity=0.501 Sum_probs=58.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|.|.+ .|.|.|.+.|+|++..+... +...... ...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~--~g~P~p~v~W~k~~~~~~~~-~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIA--EGLPTPEISWIKIGGELPAD-RTKFENF--NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEe--eEecCCeEEEEECCeECCCC-ceeEecC--CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5799999 89999999999999887654 2222222 237999999999999999999999999999988877
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-12 Score=103.79 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=65.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.|.++ .+.+|+++.|.|.+.. +.|.+.|.|+|+|..+.. +.++.+.. . .+|.|.++..+|+|.|+|.|.|..|.
T Consensus 2 ~p~~~-~~~~G~~v~l~C~~~~-g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 2 EPSDT-QVAVGEMAVLECSPPR-GHPEPTVSWRKDGQPLNLDNERVRIVD-D--GNLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CCccE-EEeCCCCEEEEEECCC-CCCCCEEEEEECCEECCCCCCCEEEcc-C--CEEEEeECCcccCEEEEEEEEeccCc
Confidence 46677 8899999999999832 578889999999999886 44555443 2 27999999999999999999999997
Q ss_pred eEE-EEEEE
Q psy2145 134 AEV-QATLQ 141 (808)
Q Consensus 134 ~~~-~~~l~ 141 (808)
..+ .+.|.
T Consensus 77 ~~s~~~~l~ 85 (86)
T cd05724 77 RESAAARLS 85 (86)
T ss_pred eeeeeEEEE
Confidence 644 44443
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-12 Score=101.25 Aligned_cols=78 Identities=22% Similarity=0.505 Sum_probs=59.9
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
|...+.++ .+.+|+.+.|.|.+ .|.|.| .|.|+|||.++... .. ... ..|.|.++ .|+|.|.|.|.|.
T Consensus 1 f~~~P~~~-~v~~G~~v~l~C~a--~G~P~P~~I~W~k~g~~l~~~--~~--~~~--s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 1 FTVEPEDL-SVTANTPFNLTCQA--VGPPEPVEILWWQGGSPLGDP--PA--PSP--SVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred CcCCCCce-EEcCCCCEEEEEEe--eeecCCeEEEEEECCEECCCC--CC--CCC--CEEEEccc--cCCeEEEEEEEec
Confidence 34445554 68999999999999 899999 79999999998641 11 112 27999887 4889999999999
Q ss_pred CeeEEE-EEEE
Q psy2145 585 LGEAVT-TASM 594 (808)
Q Consensus 585 ~G~~~~-s~~l 594 (808)
.|...+ .++|
T Consensus 70 ~G~~~s~~a~~ 80 (81)
T cd05749 70 KGVTTSRTGTV 80 (81)
T ss_pred cCcEEeeeEEe
Confidence 997665 4443
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=104.01 Aligned_cols=85 Identities=27% Similarity=0.407 Sum_probs=66.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc--eEEEecCceEEEEEccC-----CCCCcEEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR--FTETNNFGFVALDIMQC-----LPEDSGVYTC 258 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~~-----~~~D~G~Y~C 258 (808)
|...|.+..+.+|+++.|.|.+ .+.|.+.|.|+|||..+..... +....+ + +|.|.++ ..+|.|.|+|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~--~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSA--EGEPPPKIEWKKDGVLLNLVSDERRQQLPN-G--SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeec--ccCCCCEEEEEECCeECccccCcceEEccC-C--eEEEeeeeccCCCCCcCEEEEE
Confidence 5567788888999999999999 6889999999999999975443 333333 3 4666665 5899999999
Q ss_pred EEEeC-ceeEE-EEEEEEE
Q psy2145 259 RAVNA-LGQAV-TSGNLLV 275 (808)
Q Consensus 259 ~a~n~-~g~~~-~~~~l~V 275 (808)
.|.|. .|... ..+.|.|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 99874 4566654
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=101.88 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=66.6
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee-CCEEccCCCceEEEe-cCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETN-NFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.+.|.+..+..|+++.|.|.+. |.|. .+.|++ +|..+....++.... .....+|.|.+++.+|+|.|+|.|.|.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~--G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVI--GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeE--eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 44567788999999999999995 5664 899998 677776655554433 335568999999999999999999998
Q ss_pred cee-EEEEEEEE
Q psy2145 264 LGQ-AVTSGNLL 274 (808)
Q Consensus 264 ~g~-~~~~~~l~ 274 (808)
.|. ...++.|.
T Consensus 80 ~g~~~~~sv~l~ 91 (92)
T cd04977 80 KGTESEATVNLK 91 (92)
T ss_pred CCCcceeEEEEE
Confidence 764 45566654
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=108.73 Aligned_cols=116 Identities=16% Similarity=0.276 Sum_probs=81.5
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
+|.|.+++.+|+|.|.|.+.|..|.....+.|.|..+|. +....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~------------------------------------v~~~~ 45 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR------------------------------------VRLSL 45 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc------------------------------------eEEeC
Confidence 699999999999999999999999999999999986543 32222
Q ss_pred CCCccccCCceEEEEEEEeeCCC-CC-eEEEEEECCEEccC------CCc---EEEEEeCC---EEEEEEccCCCCCcEE
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVGD-PT-MRFEWFVNGVELKM------GSR---FHVQHDFG---YVTLDITKCVPADSGV 708 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~------~~~---~~~~~~~~---~~~L~I~~v~~~D~G~ 708 (808)
.. ....+|+.+.|.|.+ .|. |. +.|.|++||..... +.. .....++. .+.|.|..-..++.+.
T Consensus 46 ~~-~~~~~~~~~~L~C~a--~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ 122 (139)
T cd05771 46 EK-LVSMIEEPQTLICHI--AGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGAT 122 (139)
T ss_pred CC-ceeecCCcEEEEEEE--CCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCE
Confidence 21 233478999999999 674 54 59999999865221 111 11111222 2567777655556779
Q ss_pred EEEEEEeCC
Q psy2145 709 YMCKAINRA 717 (808)
Q Consensus 709 Y~C~A~N~~ 717 (808)
|+|.+.+..
T Consensus 123 ytC~V~H~~ 131 (139)
T cd05771 123 YTCRVSHVS 131 (139)
T ss_pred EEEEEEcCC
Confidence 999998764
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-12 Score=104.07 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=63.4
Q ss_pred cccCCCceEEEEEEeeCC-----CCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 515 AVEEGKNAHFSCRLIPVG-----DPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g-----~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
.+.+|+.+.|.|.+ .| .|.+.|.|||+|..+... ....+...++ .|.|.++..+|+|.|+|.+.|..|.
T Consensus 10 ~v~~G~~~~L~C~~--~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 10 YVLEGEPVVIKCPL--FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEecCCCeEEECCC--CCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 47899999999998 67 689999999999765421 1222233333 7999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2145 588 AVTTASMKI 596 (808)
Q Consensus 588 ~~~s~~l~V 596 (808)
.+.++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999988875
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=96.33 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=55.7
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+.|+|.+ .|.|.|++.|+|||.++..+ .++.. +++ +|.|.++..+|+|.|+|.|.|..+.......++.
T Consensus 1 ~~l~c~v--~g~P~P~v~W~kdg~~l~~~~~~~~~--~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKV--KAFPAPEVIWLKDGLPAAEKCSRYHV--DGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeE--EEcCCCeEEEEECCEECCCCCcEEEe--CCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4799999 89999999999999998765 33322 233 7999999999999999999999776666655544
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-12 Score=101.43 Aligned_cols=70 Identities=26% Similarity=0.421 Sum_probs=54.2
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-EEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSST 724 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~s~ 724 (808)
|+|.|.+ .|.|.|.|.|+|++... ..+.++.+..+ .+|.|.++..+|+|.|+|.|.|.+|.+ +.++
T Consensus 1 v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSA--EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeC--eEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 5799999 79999999999964321 12345554332 379999999999999999999999987 5566
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 6654
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=99.92 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=67.5
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.+.+|+.++|.|.+ .|.|.+.|.|+++|..+.....+.... ......|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 5 ~~~~G~~~~l~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPA--SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EecCCCcEEEEEEc--CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 46689999999999 799999999999999987665544322 234568999999999999999999999999998888
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 865
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=101.03 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=62.4
Q ss_pred CeeeecCCCccc--ccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCC-CCCEEEEEE
Q psy2145 504 PVFTKPLQNIDA--VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA-EDEGIYICK 580 (808)
Q Consensus 504 P~f~~~~~~~~~--v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 580 (808)
|.|+..+.+... ...|..+.|.|.+ .|+|.|.|+|+|+|..+............+ .|.|.++.. +|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~--~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA--RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee--eEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEE
Confidence 667777666521 2345679999999 799999999999999985433222233334 689988874 899999999
Q ss_pred EEeCCeeEEE
Q psy2145 581 ATNALGEAVT 590 (808)
Q Consensus 581 a~N~~G~~~~ 590 (808)
|.|..|...+
T Consensus 78 a~N~~G~~~S 87 (91)
T cd04967 78 ASNIVGTVLS 87 (91)
T ss_pred EEcCCCEEEe
Confidence 9999998765
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-12 Score=99.84 Aligned_cols=68 Identities=24% Similarity=0.464 Sum_probs=53.6
Q ss_pred ccccCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|++++|.|.+ .|.|. +.+.|||||+.|..+ ..+|.|.++ .+|+|.|+|.|.|. ..+..+
T Consensus 10 ~~v~~G~~V~L~C~~--~~~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v 74 (78)
T cd05752 10 TTIFQGEKVTLTCNG--FNSPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS--SLSDPV 74 (78)
T ss_pred eEeeCCCCEEEEEeC--CCCCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC--cCCCCE
Confidence 468899999999999 78786 479999999988421 127999999 99999999999986 444444
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|+|
T Consensus 75 ~l~V 78 (78)
T cd05752 75 HLEV 78 (78)
T ss_pred EEeC
Confidence 4443
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=99.26 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=59.2
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc--ceEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG--EAVSST 724 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G--~~~~s~ 724 (808)
|++++|.|.+ .|.|.+.|.|++.|+...... +..+......++|.|.+++.+|+|.|+|.|+|..+ ..+.++
T Consensus 1 Ge~~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIV--QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEE--ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 7899999999 799999999999887543211 11111122356899999999999999999999987 667777
Q ss_pred EEEEE
Q psy2145 725 SLKVK 729 (808)
Q Consensus 725 ~l~V~ 729 (808)
.|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 77774
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=99.67 Aligned_cols=73 Identities=19% Similarity=0.492 Sum_probs=57.1
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCE---e--cCCCC---CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEK---P--LEDSS---RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~---~--l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
|+.+.|.|.+ .|.|.|.|+|+|++. . +.... ++... ....|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 G~~v~l~C~~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDV--TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT---NIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeec--cccCCCcEEEEecCCCCcceeecCCcccCCEEEc---cccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999 899999999999742 1 11111 11111 2237999999999999999999999999999
Q ss_pred EEEEEE
Q psy2145 591 TASMKI 596 (808)
Q Consensus 591 s~~l~V 596 (808)
.+.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 988875
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=100.45 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=61.0
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.++|.|.+. .+.|.+.|.|+++|..+.... ...+ ..|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 11 ~~v~~G~~v~L~C~~~-~~~~~~~i~W~~~~~~~~~~~----~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 11 QEVRPGADVSFICRAK-SKSPAYTLVWTRVGGGLPSRA----MDFN--GILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred eEEcCCCCEEEEEEcC-CCCCCcEEEEEECCCcCCCcc----cccC--CEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 4678999999999983 247899999999997764321 1112 37999999999999999999999999999887
Q ss_pred E
Q psy2145 726 L 726 (808)
Q Consensus 726 l 726 (808)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 6
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=101.13 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=63.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE--------CCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV--------NGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--------~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
..+.+|++++|.|.+ .|.|.+.|.|++ ++.....+.|+.+..+ .+..+|.|.++..+|+|.|+|.|.+.
T Consensus 7 v~v~eG~~v~L~C~~--~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 7 VTVVEGGTANLTCRV--DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred EEEecCCcEEEEEEE--ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 578999999999999 799999999986 3333334567776443 35579999999999999999999996
Q ss_pred CcceEEEEEEEE
Q psy2145 717 AGEAVSSTSLKV 728 (808)
Q Consensus 717 ~G~~~~s~~l~V 728 (808)
.+. +.++.|+|
T Consensus 85 ~~~-~~~~~l~v 95 (95)
T cd07701 85 PVK-TSKAYLTV 95 (95)
T ss_pred cCc-cEEEEEEC
Confidence 444 77787775
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-11 Score=96.66 Aligned_cols=71 Identities=24% Similarity=0.523 Sum_probs=56.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC----CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS----SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
+.|+|.+. .+.|.+.+.|+|||+.|... .++..........|.|.++..+|+|.|+|.|+|..|..+.++.
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 47999983 35788999999999998643 2234433344568999999999999999999999999888765
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=102.14 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=60.4
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc--cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
.+..+.+|+.+.|.|.. |.|.|.+.|.|++|+.++ ..+.|..+....| .|.|.+|+.+|+|.|+|.|+|.++..
T Consensus 11 ~~~~v~eG~~~~L~C~p-P~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDP-PPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCC-CCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 34568899999999986 589999999999999875 3344544444334 79999999999999999999997655
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=101.30 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=63.4
Q ss_pred ccccCCceEEEEEEEee---CCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 646 SEIMEGQSAHYDCRVVP---VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~---~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
..+.+|+.+.|.|.... ..+|.|.|.|||||++|....+... .+ ..|.|.++..+|+|.|+|.|.|.+|....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KG--SKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cC--CEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 35778999999998731 1236889999999999986654432 22 38999999999999999999999998887
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
+++..+.
T Consensus 81 ~~t~t~~ 87 (92)
T cd05757 81 NVTRTIS 87 (92)
T ss_pred EEEEEEE
Confidence 7766554
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=97.36 Aligned_cols=65 Identities=31% Similarity=0.620 Sum_probs=51.7
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCC----CCCEEEEEEEEeCCeeEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRA----EDEGIYICKATNALGEAVT 590 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~ 590 (808)
+.|.|.+ .|.|.|.|+|+|||..+... .++.+....+ .|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~--~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEA--KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 5799999 89999999999999998643 3444433344 688887754 7999999999999998665
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=95.50 Aligned_cols=66 Identities=27% Similarity=0.545 Sum_probs=52.3
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC--CCCCeEEEeeCcEEEEEECCCC----CCCCEEEEEEEEeCCeeEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGYVAMDLSHVR----AEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~--~~~~~~~~~~~~~~~L~I~~v~----~~D~G~Y~C~a~N~~G~~~~s 591 (808)
+.|.|.+ .|.|.|.|+|+|||..+. .+.++.+..+++ +|.|..+. .+|+|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~~--~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEA--KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEec--cccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999 899999999999999764 345565544444 68888764 247999999999999987665
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-11 Score=97.07 Aligned_cols=67 Identities=18% Similarity=0.419 Sum_probs=55.5
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
|.+...|+...+.+|++|+|.|.+ .+.|. ..+.|+|||..+... ++ +|.|.++ .+|+|.|+|+|.|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~--~~~p~~~~~~W~kng~~l~~~--------~~--~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNG--FNSPEQNSTQWYHNGKLLETT--------TN--SYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeC--CCCCCCccEEEEECCEEeecc--------CC--eEEEeec-ccCCEEeEEECCC
Confidence 567778888999999999999999 45564 579999999987321 12 7899999 9999999999987
Q ss_pred C
Q psy2145 263 A 263 (808)
Q Consensus 263 ~ 263 (808)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 5
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=96.71 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=54.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
..+.+|+++.|.|.+ . .|.+.|.|+|||.+|..+ .++.+. .+ .|.|.+++.+|+|.|+|.|.+..
T Consensus 6 ~~v~~G~~v~L~C~~--~-~~~~~i~W~~ng~~i~~~~~r~~~~--~~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 6 RTFKLGNNAELKCSP--K-SNLARVVWKFDGKVLTPESAKYLLY--RD--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCEEEEEEC--C-CCCCeEEEEECCEECCCCCceEEEE--CC--cEEEeCCCHHHCEEEEEEEEecc
Confidence 467889999999997 3 478899999999999876 455543 23 59999999999999999999884
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-11 Score=98.22 Aligned_cols=76 Identities=13% Similarity=0.318 Sum_probs=60.1
Q ss_pred CCceEEEEEEeeCCC--CCcEEEEEECCEecCCCCC----eE-EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 519 GKNAHFSCRLIPVGD--PTLKVEWFRNEKPLEDSSR----IT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 519 G~~v~l~C~v~~~g~--P~~~v~W~k~g~~l~~~~~----~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
|+.+.|.|.+ .|. |.+.|+|+++++.+..... .. .........|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~--~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTV--LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEE--EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 7899999999 677 8899999998876543211 11 1111234589999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 592 ASMKI 596 (808)
Q Consensus 592 ~~l~V 596 (808)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 98876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.6e-11 Score=94.96 Aligned_cols=66 Identities=27% Similarity=0.545 Sum_probs=50.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCC----CCCEEEEEEEEeCCeeEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRA----EDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~N~~G~~~~s 591 (808)
+.|.|.+ .|.|.|+|+|+|||.++... .++.+...++ +|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEA--KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeC--cccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 5799999 89999999999999987433 3344443344 677766654 37899999999999987664
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-07 Score=109.95 Aligned_cols=450 Identities=14% Similarity=0.130 Sum_probs=255.2
Q ss_pred CCCcccccccccccee--eeccCCCchhhhhhhccCC--ccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe
Q psy2145 13 SSPYLSSKKETSYHWQ--NVPVPEWSKEQENAKKKKN--FIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK 88 (808)
Q Consensus 13 ~~~~~~~~~ed~g~y~--c~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~ 88 (808)
.++.....-.+.|.|. ..+.|..+..+........ +.-..+.. ..- .+..|+.|+|.-.+.. .....+.|..
T Consensus 1658 tGk~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~a-S~~-~aavn~~V~fs~~lt~--GS~vty~W~~ 1733 (2740)
T TIGR00864 1658 SGKGAKLNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQA-SDN-PAAVNALINLSAELAE--GSGLQYRWFL 1733 (2740)
T ss_pred cCceeEEecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEec-cCC-cccCCCeEEEEEEecC--CCCcEEEEEE
Confidence 3343333344555554 7778776666443332211 11111221 122 5678999999987773 5667999987
Q ss_pred CCE-EeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEE--EecCcceEEEEEEEEecCCCccccccccccceeeeeec
Q psy2145 89 NGR-PVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA--VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165 (808)
Q Consensus 89 ~g~-~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (808)
++. ....... ...+ + -...|.|...+ .|..|....+..+.|..+..
T Consensus 1734 gdG~s~~~s~p-~~tH-----t-------f~~~G~y~VtVta~N~vss~~~s~~V~VqepV~------------------ 1782 (2740)
T TIGR00864 1734 EEGDDLETSEP-FMSH-----S-------FPSAGLHLVTMKAFNELGSANASEEVDVQEPIS------------------ 1782 (2740)
T ss_pred CCCCCcccCCC-ceEE-----E-------ccCCceEEEEEEEEccccccceeEEEEEEeccc------------------
Confidence 553 2111111 0111 1 23568887655 58888888887777764321
Q ss_pred cccccccccccccccCCCCeEEeec--CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEE
Q psy2145 166 DKSKYQRGEYIEETTTQAPIFTTSL--KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243 (808)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L 243 (808)
-..|...- ....+..|..+.|.-.+. .|. ...+.|..++..-..+. ...
T Consensus 1783 -----------------GL~i~~~~~~~~~~~~ag~~v~F~a~vs-tGs-nVsw~W~f~~g~s~~gk---------~v~- 1833 (2740)
T TIGR00864 1783 -----------------GLKIRAADAGEQNFFAADSSVCFQGELA-TGT-NVSWCWAIDGGSSKMGK---------HAC- 1833 (2740)
T ss_pred -----------------cceEecCCCCcccceecCcEEEEEEEcc-CCC-eeEEEEEeCCCCccccc---------eeE-
Confidence 11111111 111345688888888874 333 45788887654311111 111
Q ss_pred EEccCCCCCcEEEE--EEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccC
Q psy2145 244 DIMQCLPEDSGVYT--CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321 (808)
Q Consensus 244 ~I~~~~~~D~G~Y~--C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~ 321 (808)
.+..+.|.|+ ..|.|..+....+..+.|+.+.. .+...
T Consensus 1834 ----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~------------------------------------~L~L~ 1873 (2740)
T TIGR00864 1834 ----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF------------------------------------GLELK 1873 (2740)
T ss_pred ----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc------------------------------------eEEEe
Confidence 3467899995 55788888888888888876321 11112
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEEC-CEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEE--EEEEEcCCcc
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN-GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTY--TCRAVNELGE 398 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y--~C~a~n~~g~ 398 (808)
.....+..|+.++|.+.+ ...+...+.|... |.+..........+ . ..--|.| +..|.|..+.
T Consensus 1874 as~~~~~~n~~v~fsa~l--~~GS~Vtf~w~fGdgs~~~~t~~~t~~H-----------s-Y~~~G~Y~VtV~A~N~Vs~ 1939 (2740)
T TIGR00864 1874 ASKKIAAIGEKVEFQILL--AAGSAVNFRLQIGGAAPEVLQPGPRFSH-----------S-FPRVDDHMVNLRAKNEVSC 1939 (2740)
T ss_pred cccccccCCCEEEEEEEe--cCCCceEEEEEeCCCCceeecCCCeEEe-----------e-cCCCCcEEEEEEEEeccce
Confidence 223345679999999998 5566889999875 43322111001111 1 1234555 4567888888
Q ss_pred eEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchh
Q psy2145 399 AVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGL 478 (808)
Q Consensus 399 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (808)
......+.|..+-.- +.+
T Consensus 1940 ~~a~~~V~Vle~V~g-------------------------------------L~I------------------------- 1957 (2740)
T TIGR00864 1940 AQANLHIEVLEAVRG-------------------------------------LQI------------------------- 1957 (2740)
T ss_pred eeeeEEEEEEEeccc-------------------------------------eEe-------------------------
Confidence 777666666543100 000
Q ss_pred hhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee
Q psy2145 479 EKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558 (808)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~ 558 (808)
...-...+..|+..+|...+. .|.| ..+.|+++-+.+..+..+....
T Consensus 1958 ------------------------------~~~c~~~~~~g~~~tF~A~v~-~g~~-V~f~W~f~~~~~~g~~~~~~~G- 2004 (2740)
T TIGR00864 1958 ------------------------------PDCCAAGIATGEEKNFTANVQ-RGKP-VAFAWTFDLHHLHGDSLVIHMG- 2004 (2740)
T ss_pred ------------------------------cCCcccceecCceEEEEEEEe-cCCc-eEEEEEeeecccCCCcceeecC-
Confidence 000000146799999999985 5554 4699998766665554432222
Q ss_pred CcEEEEEECCCCCCCCEEEEE--EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC
Q psy2145 559 FGYVAMDLSHVRAEDEGIYIC--KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636 (808)
Q Consensus 559 ~~~~~L~I~~v~~~D~G~Y~C--~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P 636 (808)
...+... ...|.|+. .|.|..|.......|.|+....
T Consensus 2005 -~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~----------------------------------- 2043 (2740)
T TIGR00864 2005 -KDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQDALM----------------------------------- 2043 (2740)
T ss_pred -CceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEehee-----------------------------------
Confidence 2222333 35788865 6789999988777777775321
Q ss_pred eEEeecC-CCccccCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE--
Q psy2145 637 IFTQLLT-GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK-- 712 (808)
Q Consensus 637 ~~~~~~~-~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 712 (808)
...+. .+.....+..++|.|.+.+ +.-...+.|-++ |......+..++.+ .. ...|.|...
T Consensus 2044 --~~~L~~~p~~~~~n~~v~f~~~~~~-~~~~v~~~WDFGDGt~~~~T~~~~~sH-----------tY-~r~G~Y~V~V~ 2108 (2740)
T TIGR00864 2044 --DAALQAGPQDCFTNKMAQFEAATSP-KPNFMACHWDFGDGSAGQDTDEPRAEH-----------EY-LHPGDYRVQVN 2108 (2740)
T ss_pred --eEEEeecCcceecCceEEEEEEEcc-CCCcEEEEEEecCCCCccccCCceeEE-----------Ee-cCCccEEEEEE
Confidence 11111 2234556889999999842 233579999884 66654332222221 11 235888866
Q ss_pred EEeCCcceEEEEEEEEEeC
Q psy2145 713 AINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~ 731 (808)
|+|.+......+.|.|...
T Consensus 2109 a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864 2109 ASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred EEcceeeeeeEEEEEEEEe
Confidence 6899998888888888654
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=94.33 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=56.7
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC-CceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.|++..+..|+++.|.|.+ ..+.+.|.|++||.+|..+ .++.+. ++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~---~~~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSP---KSNLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEEC---CCCCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 4567889999999999997 3467899999999999766 455443 32 69999999999999999998853
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=97.60 Aligned_cols=84 Identities=19% Similarity=0.428 Sum_probs=63.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--------CEEeeccCcEEEEee-CCeEEEEEcccCcCCCeeEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--------GRPVTIGHRFRPIHD-FGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--------g~~l~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C 125 (808)
.++++ .+.+|++++|.|.+. +.|.+.|.|++. +.....+.|+....+ .+..+|.|.+++.+|+|.|+|
T Consensus 3 ~~~~v-~v~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 3 LTQNV-TVVEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred ccceE-EEecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEE
Confidence 35666 899999999999998 578889999863 222334567766433 355789999999999999999
Q ss_pred EEEecCcceEEEEEEEE
Q psy2145 126 RAVNLVGFAEVQATLQC 142 (808)
Q Consensus 126 ~a~n~~g~~~~~~~l~V 142 (808)
.+.+..+ ....+.|+|
T Consensus 80 ~~~t~~~-~~~~~~l~v 95 (95)
T cd07701 80 SLFTMPV-KTSKAYLTV 95 (95)
T ss_pred EeEeecC-ccEEEEEEC
Confidence 9998533 366666654
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=96.53 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=65.7
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.+..|..+ .+.+|++++|.|.+.+ +.|.+.+.|++++..+... . ...+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~~p~~~-~v~~G~~v~L~C~~~~-~~~~~~i~W~~~~~~~~~~--~--~~~~--~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 4 TVEEPRSQ-EVRPGADVSFICRAKS-KSPAYTLVWTRVGGGLPSR--A--MDFN--GILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred EecCCCce-EEcCCCCEEEEEEcCC-CCCCcEEEEEECCCcCCCc--c--cccC--CEEEECCCCHHHCEEEEEEEeccC
Confidence 45677777 8999999999999974 3688899999998765432 1 1112 379999999999999999999999
Q ss_pred cceEEEEEE
Q psy2145 132 GFAEVQATL 140 (808)
Q Consensus 132 g~~~~~~~l 140 (808)
|....++.|
T Consensus 76 g~~~~~~~l 84 (85)
T cd05754 76 DTDEATATL 84 (85)
T ss_pred CeEeEEEEE
Confidence 999888876
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=95.01 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=61.0
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
...+.+|+++.|.|.+ .|.|.|.|.|+++|..+ ..+.|+.+... .+..+|.|.+|..+|+|.|+|.|..
T Consensus 6 ~~tv~~G~tv~L~C~v--~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 6 DETVAVGGTVTLKCGV--KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cEEEecCCcEEEEEEE--eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 3568899999999999 79999999999877532 23456665433 3457999999999999999999987
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
. -..+..++|.|
T Consensus 84 ~-~~~~~~~~~~v 95 (95)
T cd05882 84 M-PVRTAKATVTV 95 (95)
T ss_pred e-ccccEEEEEEC
Confidence 2 23344444443
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-10 Score=93.28 Aligned_cols=80 Identities=25% Similarity=0.470 Sum_probs=65.9
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+..|+.+.|.|.+ .+.|.+.+.|+|++..+.....+... .......|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 5 ~~~~G~~~~l~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPA--SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EecCCCcEEEEEEc--CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 46789999999999 78999999999999988765444322 1233457999999999999999999999999888887
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 764
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=93.19 Aligned_cols=77 Identities=17% Similarity=0.386 Sum_probs=57.2
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCC----CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe--eEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG--EAVTTA 592 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G--~~~~s~ 592 (808)
|+++.|.|.+ .|.|.+.+.|+++|+...... +..+.......+|.|.+++.+|+|.|+|.|.|..+ ....++
T Consensus 1 Ge~~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIV--QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEE--ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 7899999999 789999999999886542211 11111122245899999999999999999999877 556666
Q ss_pred EEEEE
Q psy2145 593 SMKIK 597 (808)
Q Consensus 593 ~l~V~ 597 (808)
.|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 66664
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=94.24 Aligned_cols=70 Identities=24% Similarity=0.491 Sum_probs=52.8
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecC--------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE-EEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLE--------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA-VTTA 592 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~ 592 (808)
|+|.|.+ .|.|.|.|+|+|++.... ...++.... ++ +|.|.++..+|+|.|+|.|.|..|.. +.++
T Consensus 1 v~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSA--EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeC--eEeCCCEEEEEECCCccccccccccccCCCEEEec-CC--eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 5799999 899999999999743211 234444432 23 79999999999999999999999977 4455
Q ss_pred EEEE
Q psy2145 593 SMKI 596 (808)
Q Consensus 593 ~l~V 596 (808)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 5543
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=93.76 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=69.5
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEee----CCeEEEEEcccCcCC-CeeE
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHD----FGYVALDIIDTIPED-SGTY 123 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~----~~~~~L~I~~~~~~D-~G~Y 123 (808)
+.+....+. .+.+|+++.|.|.+.+ .+++..|.|..++..|..+ .||.+... +...+|.|.++...| .|.|
T Consensus 3 P~i~~~~s~-~~~~G~~~~L~C~~~s-~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 3 PIISSEQVQ-YAVRGERGKVKCFIGS-TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CEEecCceE-EEeCCCcEEEEEEEcc-CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 445555666 8999999999999974 2333478999988887653 58877553 466799999998766 8999
Q ss_pred EEEEEecCcceEEEEEE
Q psy2145 124 TCRAVNLVGFAEVQATL 140 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l 140 (808)
.|.|.|.+|.+...++|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999887776
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=95.75 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=62.1
Q ss_pred cccCCCceEEEEEEee---CCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 515 AVEEGKNAHFSCRLIP---VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~---~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
.+.+|..+.|.|.... ..+|.|.+.|+|||+++....+... .++ .|.|.++..+|+|.|+|.|.|..|.....
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 5788999999998620 1136789999999999986654432 333 79999999999999999999998877766
Q ss_pred EEEEEE
Q psy2145 592 ASMKIK 597 (808)
Q Consensus 592 ~~l~V~ 597 (808)
++..+.
T Consensus 82 ~t~t~~ 87 (92)
T cd05757 82 VTRTIS 87 (92)
T ss_pred EEEEEE
Confidence 655554
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=96.31 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=58.7
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEec--CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
..+.+|+.+.|.|.. |.|.|.+.+.|++++.++ ..+.+..+....| .|.|.+++.+|+|.|+|.|+|..+..
T Consensus 13 ~~v~eG~~~~L~C~p-P~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 13 VKVKEGWGVVLFCDP-PPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeeCCcEEEeeCC-CCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 368899999999985 699999999999999864 3344444554445 79999999999999999999986544
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=95.53 Aligned_cols=78 Identities=27% Similarity=0.484 Sum_probs=61.1
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC-cce
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA-GEA 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~-G~~ 720 (808)
..+.+|+.+.|.|.+ .+ |.+.+.|+|||..+.... ++... . ..|.|.++..+|+|.|+|.|.|.. +..
T Consensus 6 ~~v~~g~~v~L~C~~--~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 6 VTVVEGNSVFLECSP--KS-NLASVVWLFQGGPLQRKEEPEERLLVT--E--DGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred EEEECCCcEEEEEeC--CC-CCceEEEEECCcccccccCcCceEEEc--C--CCEEEccCCHHHCEEEEEEEecCcccee
Confidence 357789999999998 56 889999999998887652 33332 2 259999999999999999999764 566
Q ss_pred EEEEEEEEEe
Q psy2145 721 VSSTSLKVKS 730 (808)
Q Consensus 721 ~~s~~l~V~~ 730 (808)
..+..|.|..
T Consensus 79 ~~~~~l~V~~ 88 (89)
T cd04979 79 LATYSLNVLE 88 (89)
T ss_pred EeEEEEEEec
Confidence 6677777753
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=94.52 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=58.0
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEcc--------------CCCcEEEEE---eCCEEEEEEccCCCCCcEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK--------------MGSRFHVQH---DFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~--------------~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y 709 (808)
.+.+|++|+|.|.+ .+.|.+.|.|++++.... ..+|+.+.. +.+...|+|.++..+|+|+|
T Consensus 3 ~~~~G~~VtL~C~~--s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEe--CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 46789999999999 789999999998773321 123444444 45667899999999999999
Q ss_pred EEEEEeCCcceE
Q psy2145 710 MCKAINRAGEAV 721 (808)
Q Consensus 710 ~C~A~N~~G~~~ 721 (808)
.|.|.|..++.+
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999988653
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=92.15 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=61.4
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEe--------eccCcEEEEeeC-CeEEEEEcccCcCCCeeEEEEE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV--------TIGHRFRPIHDF-GYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l--------~~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
.++ .+.+|+++.|.|.+. +.|.+.|.|+|++..+ ..+.|+.+.... +..+|.|.++..+|+|.|+|.+
T Consensus 5 ~~~-tv~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDE-TVAVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccE-EEecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence 345 789999999999999 5788899999977543 234566544333 4579999999999999999999
Q ss_pred EecCcceEEEEEEEE
Q psy2145 128 VNLVGFAEVQATLQC 142 (808)
Q Consensus 128 ~n~~g~~~~~~~l~V 142 (808)
... -..+..++|+|
T Consensus 82 ~t~-~~~~~~~~~~v 95 (95)
T cd05882 82 FTM-PVRTAKATVTV 95 (95)
T ss_pred Eee-ccccEEEEEEC
Confidence 873 34455555543
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=92.63 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=54.8
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
.+.+|++++|.|.+. .+.|.+.+.|||+|+.+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 10 ~V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 10 VVFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred eecCCCCEEEEeeCC-CCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 588999999999973 357788999999998775321 224799999999999999999999999554
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-10 Score=90.11 Aligned_cols=78 Identities=31% Similarity=0.639 Sum_probs=61.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.+.... ..+.+|+.+.|.|.+ .|.|.+.+.|++++..+..+.. .|.|..+..+|+|.|+|.|.|
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~--~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSV--SGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEE--ESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEE--Ecccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEe
Confidence 5555443 468899999999999 6999999999999988874322 277889999999999999999
Q ss_pred CCc-ceEEEEEEEE
Q psy2145 716 RAG-EAVSSTSLKV 728 (808)
Q Consensus 716 ~~G-~~~~s~~l~V 728 (808)
..| ..+.++.|+|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 664 5566677765
|
... |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-10 Score=90.88 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=59.2
Q ss_pred CceEEEEEEEeeCCCC--CeEEEEEECCEEccC---CCcEEE---EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 651 GQSAHYDCRVVPVGDP--TMRFEWFVNGVELKM---GSRFHV---QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~---~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
|+++.|.|.+ .|+| ...+.|.+.|+.+.. ...++. ......++|.|.++..+|+|.|+|.|+|..|....
T Consensus 1 Ge~~~L~C~~--~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTA--RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEE--EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 7899999999 5555 568899998865421 111111 11234579999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
++.|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 9999986
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-10 Score=91.63 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=60.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE--CCEEc----cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE-eCCc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVEL----KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI-NRAG 718 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--~g~~l----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~-N~~G 718 (808)
+.+.+|+++.|.|.. +.|.|.|.||| +|... ..+.++... . ..|.|.++..+|+|.|+|.|. |..|
T Consensus 6 ~~~~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~--~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 6 VYGVENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E--RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEEe--c--CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 357789999999986 58999999998 33222 223455432 2 269999999999999999998 6888
Q ss_pred ceEEEEEEEEEe
Q psy2145 719 EAVSSTSLKVKS 730 (808)
Q Consensus 719 ~~~~s~~l~V~~ 730 (808)
.....++|+|..
T Consensus 79 ~~~~~~~l~v~~ 90 (91)
T cd05871 79 QTLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEEec
Confidence 888889998863
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-10 Score=85.11 Aligned_cols=63 Identities=37% Similarity=0.554 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ..... .....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~--~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA--EGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC--ccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48999999997 7899999999999998872 22222 2334899999999999999999999876
|
|
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-10 Score=94.07 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=61.7
Q ss_pred EEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEE-ccCCCcEEEEEeCCEEEEEEccCCCCCcE-EEEEEEEe
Q psy2145 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE-LKMGSRFHVQHDFGYVTLDITKCVPADSG-VYMCKAIN 715 (808)
Q Consensus 638 ~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N 715 (808)
|.........+.+|+.+.|.|.. |.|.|.|.|.|++++.. +..+.|+.+..+ ..|.|.+|..+|+| .|.|.|+|
T Consensus 5 ~~~~~~~~v~V~eG~~~~L~C~p-P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 5 WPKEKIRPVEVEEGDSVVLPCNP-PKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred CCccccceeEEecCCCEEEEecC-CCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEEehhhCCCCeEEEEEc
Confidence 33333344678999999999974 38999999999998755 445666666544 37999999999999 79999999
Q ss_pred CCcce
Q psy2145 716 RAGEA 720 (808)
Q Consensus 716 ~~G~~ 720 (808)
.+...
T Consensus 81 ~~~~~ 85 (95)
T cd05845 81 PGLRT 85 (95)
T ss_pred ccccc
Confidence 97544
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=87.71 Aligned_cols=81 Identities=37% Similarity=0.642 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+++.|.|.+ .+.+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 4 ~~~~~g~~~~l~C~~--~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 4 VTVKEGESVTLSCEV--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEE--ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 356789999999999 6778999999998 9999877888887776678999999999999999999999999988888
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7776
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=87.71 Aligned_cols=81 Identities=37% Similarity=0.642 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+++.|.|.+ .+.+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 4 ~~~~~g~~~~l~C~~--~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 4 VTVKEGESVTLSCEV--SGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred EEEeCCCeEEEEEEE--ccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 356789999999999 6778999999998 9999877888887776678999999999999999999999999988888
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7776
|
|
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=91.10 Aligned_cols=80 Identities=31% Similarity=0.475 Sum_probs=60.8
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC----ceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc-
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL- 264 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~- 264 (808)
+..+.+.+|+++.|.|.+ .+ |.+.+.|+|++..+.... ++.... + .|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~~~~v~~g~~v~L~C~~--~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~--~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 3 EKVVTVVEGNSVFLECSP--KS-NLASVVWLFQGGPLQRKEEPEERLLVTE--D--GLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred ceEEEEECCCcEEEEEeC--CC-CCceEEEEECCcccccccCcCceEEEcC--C--CEEEccCCHHHCEEEEEEEecCcc
Confidence 445678899999999998 34 778999999998876542 333322 2 59999999999999999999754
Q ss_pred eeEEEEEEEEEe
Q psy2145 265 GQAVTSGNLLVH 276 (808)
Q Consensus 265 g~~~~~~~l~V~ 276 (808)
+....+..|.|.
T Consensus 76 ~~~~~~~~l~V~ 87 (89)
T cd04979 76 KQTLATYSLNVL 87 (89)
T ss_pred ceeEeEEEEEEe
Confidence 445556677664
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=89.36 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
.+....+.+|++|+|.|.+. .+.+...+.|||+|..+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ECCcceecCCCCEEEEeeCC-CCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 33345789999999999984 246677899999998775311 122799999999999999999999888654
Q ss_pred E
Q psy2145 269 T 269 (808)
Q Consensus 269 ~ 269 (808)
+
T Consensus 76 s 76 (83)
T cd05753 76 S 76 (83)
T ss_pred C
Confidence 3
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=91.41 Aligned_cols=81 Identities=17% Similarity=0.366 Sum_probs=60.9
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCE--------EccCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV--------ELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~--------~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
...+.+|++++|.|.+ .+.|.+.+.|++-+. ....+.||.+.. .+...+|.|.+++.+|+|.|+|.|.+
T Consensus 6 ~~~v~~G~~v~L~C~~--~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 6 DVTVVEGGTATLKCRV--KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred cEEEcCCCCEEEEEEE--CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 3568899999999999 788999999985221 111245776633 23456899999999999999999998
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
... .+.++.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 764 466676765
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-05 Score=100.04 Aligned_cols=454 Identities=16% Similarity=0.146 Sum_probs=245.3
Q ss_pred ccccee--eeccCCCchhhhhhhcc--CCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc
Q psy2145 23 TSYHWQ--NVPVPEWSKEQENAKKK--KNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR 98 (808)
Q Consensus 23 d~g~y~--c~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r 98 (808)
..|.|. ..+.|..+......... .++.-..+. +... .+..+.++.|+-.... |. ...+.|.+++.-......
T Consensus 1482 ~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tin-as~~-~vpl~~sV~Fta~~s~-Gs-~v~ysWdFGDg~ts~~~n 1557 (2740)
T TIGR00864 1482 SPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTIN-ASLT-NVPLNGSVHFEAHLDA-GD-DVRFSWILCDHCTPIFGG 1557 (2740)
T ss_pred CCceEEEEEEEECCCCceEEEEEEEEeccccceEEc-CCCc-cccccceEEEEEEccC-CC-ceeEEEEeCCCCccccCC
Confidence 456665 66777765543222211 111111222 2222 4566778999866553 33 458999885532111100
Q ss_pred EEEEeeCCeEEEEEcccCcCCCeeEEEEE--EecCcceEEEEEEEEecCCCccccccccccceeeeeecccccccccccc
Q psy2145 99 FRPIHDFGYVALDIIDTIPEDSGTYTCRA--VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176 (808)
Q Consensus 99 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (808)
-.. .-+ -...|.|+... .|..|....+..+.|......+. .+..
T Consensus 1558 pt~-------~yT-----Y~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~Glq------------I~~~---------- 1603 (2740)
T TIGR00864 1558 NTI-------FYT-----FRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQ------------ILGE---------- 1603 (2740)
T ss_pred Cce-------EEe-----ecCCceEEEEEEEecCCCccceeEEEEEeecccceE------------EEee----------
Confidence 000 011 12468887654 58999988888888864322110 0000
Q ss_pred ccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEE
Q psy2145 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVY 256 (808)
Q Consensus 177 ~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 256 (808)
....-..=...+....+..|..+.|.-.+. ..-...+.|-.-+..-..+..+ ...+...++ ...+.|.|
T Consensus 1604 --~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~--~GTnvsysW~~~~~n~~dg~~~--~~tGk~~~v-----t~~~pG~Y 1672 (2740)
T TIGR00864 1604 --TAEGGGGGVQELDGCYFETNHTVQFHAGFK--DGTNLSFSWNAILDNEPDGPAF--AGSGKGAKL-----NPLEAGPC 1672 (2740)
T ss_pred --cccccCCcccccccceeccCCEEEeeeccC--CCCeeEEEEEEecCCCCCCccc--cccCceeEE-----ecCCCceE
Confidence 000000000011123455677788887773 3345678886511100001101 111111122 24667888
Q ss_pred --EEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEE
Q psy2145 257 --TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334 (808)
Q Consensus 257 --~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 334 (808)
+..|.|..|....+..+.|..+. ..+........+..|+.++
T Consensus 1673 ~VtL~aSN~vG~~t~s~~i~v~epi------------------------------------~~L~L~aS~~~aavn~~V~ 1716 (2740)
T TIGR00864 1673 DIFLQAANLLGQATADCTIDFLEPA------------------------------------GNLMLQASDNPAAVNALIN 1716 (2740)
T ss_pred EEEEEEeecccceeeEEEEEEEEEc------------------------------------CceEEeccCCcccCCCeEE
Confidence 56678999998888888876521 1111122223345689999
Q ss_pred EEEEEeecCCCccEEEEEECCE-eccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEE--EEEcCCcceEEEEEEEEEecc
Q psy2145 335 FEARLIPVGDSKLKVTWLRNGV-PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTC--RAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 335 l~C~~~~~g~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~ 411 (808)
|...+ .+.....+.|...+. ....... .+.+ .....|.|.. .|.|..|+...+..|.|+.+-
T Consensus 1717 fs~~l--t~GS~vty~W~~gdG~s~~~s~p-~~tH------------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV 1781 (2740)
T TIGR00864 1717 LSAEL--AEGSGLQYRWFLEEGDDLETSEP-FMSH------------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPI 1781 (2740)
T ss_pred EEEEe--cCCCCcEEEEEECCCCCcccCCC-ceEE------------EccCCceEEEEEEEEccccccceeEEEEEEecc
Confidence 99877 677888999997553 2111111 0111 1245677754 678999998888888887542
Q ss_pred cccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCC
Q psy2145 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHK 491 (808)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (808)
.-. .|.. ..
T Consensus 1782 ~GL-----------------------------------~i~~--~~---------------------------------- 1790 (2740)
T TIGR00864 1782 SGL-----------------------------------KIRA--AD---------------------------------- 1790 (2740)
T ss_pred ccc-----------------------------------eEec--CC----------------------------------
Confidence 100 0000 00
Q ss_pred CCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 492 RPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 492 ~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
+. ....+..|..+.|.-.+. .|.+ ..+.|.++|..-.. +.... .+.
T Consensus 1791 -----------------~~-~~~~~~ag~~v~F~a~vs-tGsn-Vsw~W~f~~g~s~~---------gk~v~-----~Tf 1836 (2740)
T TIGR00864 1791 -----------------AG-EQNFFAADSSVCFQGELA-TGTN-VSWCWAIDGGSSKM---------GKHAC-----MTF 1836 (2740)
T ss_pred -----------------CC-cccceecCcEEEEEEEcc-CCCe-eEEEEEeCCCCccc---------cceeE-----Eec
Confidence 00 000245688899988873 4444 47888887643111 11112 234
Q ss_pred CCCEEEEE--EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 572 EDEGIYIC--KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 572 ~D~G~Y~C--~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
.+.|.|+. .|+|..+....+..+.|+.+.. -.....+...+.
T Consensus 1837 ~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~------------------------------------~L~L~as~~~~~ 1880 (2740)
T TIGR00864 1837 PDAGTFAIRLNASNAVSGKSASREFFAEEPIF------------------------------------GLELKASKKIAA 1880 (2740)
T ss_pred CCCeEEEEEEEEEcccCcceeeeeEEEEEecc------------------------------------eEEEeccccccc
Confidence 57898876 6789999999999999987432 111122334567
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEE--EEEEEeCCcceEEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY--MCKAINRAGEAVSSTSL 726 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G~~~~s~~l 726 (808)
.|+.++|.+.+ ...+...+.|.+. |.+..... +. ++.... .-.|.| +..|.|.++.......+
T Consensus 1881 ~n~~v~fsa~l--~~GS~Vtf~w~fGdgs~~~~t~-------~~----t~~HsY-~~~G~Y~VtV~A~N~Vs~~~a~~~V 1946 (2740)
T TIGR00864 1881 IGEKVEFQILL--AAGSAVNFRLQIGGAAPEVLQP-------GP----RFSHSF-PRVDDHMVNLRAKNEVSCAQANLHI 1946 (2740)
T ss_pred CCCEEEEEEEe--cCCCceEEEEEeCCCCceeecC-------CC----eEEeec-CCCCcEEEEEEEEeccceeeeeEEE
Confidence 89999999999 5666899999885 43332111 11 111111 224444 46689999998888888
Q ss_pred EEEeC
Q psy2145 727 KVKSK 731 (808)
Q Consensus 727 ~V~~~ 731 (808)
.|..+
T Consensus 1947 ~Vle~ 1951 (2740)
T TIGR00864 1947 EVLEA 1951 (2740)
T ss_pred EEEEe
Confidence 88655
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.5e-10 Score=91.36 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=56.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee--------------ccCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT--------------IGHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~--------------~~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
.+.+|++|+|.|.+. +.+.+.+.||++++... ...|+.... +.+.++|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 678999999999998 57888999998774321 123444433 45667899999999999999
Q ss_pred EEEEEecCcce
Q psy2145 124 TCRAVNLVGFA 134 (808)
Q Consensus 124 ~C~a~n~~g~~ 134 (808)
.|.+.|..+..
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999876654
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-09 Score=86.18 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=68.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEccCCCc--EEEEEeC---CEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVELKMGSR--FHVQHDF---GYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l~~~~~--~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.+|+.+.|.|.+ ...|.|+ +.|.+++..+..... +...... -.+.|.+.++..+|+|.|+|.|.|..+.
T Consensus 13 ~~v~~gE~~~L~V~i--eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 13 IFVNAGENLDLIVEY--EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEE--EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 569999999999999 7999998 999999988765433 2222111 2479999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999999986
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-09 Score=88.84 Aligned_cols=83 Identities=18% Similarity=0.428 Sum_probs=60.2
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEE-e-------eccCcEEEEe-eCCeEEEEEcccCcCCCeeEEEE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRP-V-------TIGHRFRPIH-DFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~-l-------~~~~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
++++ .+.+|++++|.|.+. +.+.+.+.|++.+.. + ..+.|+.... ....+.|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDV-TVVEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcE-EEcCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEE
Confidence 3455 789999999999998 467789999863221 1 1235666533 23456899999999999999999
Q ss_pred EEecCcceEEEEEEEE
Q psy2145 127 AVNLVGFAEVQATLQC 142 (808)
Q Consensus 127 a~n~~g~~~~~~~l~V 142 (808)
+.+... .+.++.|+|
T Consensus 81 ~~~~~~-~~~~~~~~v 95 (95)
T cd05717 81 LYTMPV-QTAKATVTV 95 (95)
T ss_pred EecCCC-ceEEEEEEC
Confidence 997643 466666654
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=88.06 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=56.8
Q ss_pred ccccCCceEEEEEEEe-eC--CCCCeEEEEEECCEEccCCC-cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 646 SEIMEGQSAHYDCRVV-PV--GDPTMRFEWFVNGVELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~-~~--g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
..+.+|.+..|.|.-. .. .++.+.|+|||||++|..++ ++....+ ...|.|.+|..+|+|.|+|+|+|.+|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 3467899999999621 01 45788999999999998654 3332122 23699999999999999999999987654
Q ss_pred EE
Q psy2145 722 SS 723 (808)
Q Consensus 722 ~s 723 (808)
-.
T Consensus 83 y~ 84 (95)
T cd05897 83 YN 84 (95)
T ss_pred EE
Confidence 43
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=83.29 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=50.8
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe---CCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD---FGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.|.|... .|.|.+.|+|||||++|..... ....+ ...++|.|.....+|.|.|+|.|.|.++..
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999986 7999999999999999965321 00000 013479999999999999999999999864
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-08 Score=88.62 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=80.5
Q ss_pred ceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCE----E-------------ccCCCceEEEecCceEEEEEccCCCCCc
Q psy2145 192 NCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNV----P-------------IKSGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~----~-------------l~~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
.+.+..|+.+.|.|...+ ...+.+.|.|+|.+. - .....++.+..+.|..+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 567889999999999852 234678999999431 1 1223344555566888999999999999
Q ss_pred EEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeE
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAA 333 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~ 333 (808)
|.|+|...-........-.|++..+-. +...........-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~-------------------------------------Lsv~a~~~dFp~~~~~ 142 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLT-------------------------------------LSVHSERSQFPDFSVL 142 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecce-------------------------------------EEEEeccccCCCCCee
Confidence 999999987443333322333221100 0000000011114567
Q ss_pred EEEEEEeecCCCccEEEEEECC
Q psy2145 334 HFEARLIPVGDSKLKVTWLRNG 355 (808)
Q Consensus 334 ~l~C~~~~~g~p~~~v~W~~~g 355 (808)
++.|.. .|.|.|.++|+-|.
T Consensus 143 ~i~C~s--ggfP~P~~~Wle~~ 162 (221)
T PHA03376 143 TVTCTV--NAFPHPHVQWLMPE 162 (221)
T ss_pred EEEEec--CCcCCchheecccc
Confidence 899996 89999999999864
|
|
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-08 Score=87.35 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=80.8
Q ss_pred ccCCCCcEEEEEEEeeC-CCCCceEEEEeCC----EEe-------------eccCcEEEEeeCCeEEEEEcccCcCCCee
Q psy2145 61 NLRERGHAHFECKLEPV-TDSNLKVEWFKNG----RPV-------------TIGHRFRPIHDFGYVALDIIDTIPEDSGT 122 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~-~~p~~~v~W~~~g----~~l-------------~~~~r~~~~~~~~~~~L~I~~~~~~D~G~ 122 (808)
.+..|+.+.|+|...+. ..+...|.|+|.+ ..+ ....++.+..+.++++|.|.+++.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 78899999999998742 3467799999942 221 12245556667799999999999999999
Q ss_pred EEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEE
Q psy2145 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202 (808)
Q Consensus 123 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~ 202 (808)
|+|............-.|++.. |-.+.+.........-+..+
T Consensus 102 Y~C~fQkge~~~~k~ehLt~V~--------------------------------------~~~Lsv~a~~~dFp~~~~~~ 143 (221)
T PHA03376 102 YLCRMKLGETEVTKQEHLSVVK--------------------------------------PLTLSVHSERSQFPDFSVLT 143 (221)
T ss_pred EEEEEEcCCCceeeeeeeeeee--------------------------------------cceEEEEeccccCCCCCeeE
Confidence 9999986443333333333221 01111111111111245678
Q ss_pred EEEEEeecCCCCeEEEEeeCC
Q psy2145 203 FECRLIPVSDNTMKVEWFHNN 223 (808)
Q Consensus 203 L~C~~~~~~~p~~~v~W~~~g 223 (808)
+.|.+ .+.|.|.++|+-+.
T Consensus 144 i~C~s--ggfP~P~~~Wle~~ 162 (221)
T PHA03376 144 VTCTV--NAFPHPHVQWLMPE 162 (221)
T ss_pred EEEec--CCcCCchheecccc
Confidence 99995 69999999998754
|
|
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=84.17 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=69.9
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeC-CEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKN-GRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~-g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
..+ .+.+|+++.|.|.+.+ .+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.+..+...
T Consensus 2 ~~~-~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 2 PSV-TVKEGESVTLSCEVSG--SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CcE-EEeCCCeEEEEEEEcc--CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 344 6789999999999995 47789999998 8888767788777666667899999999999999999998888777
Q ss_pred EEEEEEE
Q psy2145 136 VQATLQC 142 (808)
Q Consensus 136 ~~~~l~V 142 (808)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7766665
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=84.17 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=69.9
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeC-CEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKN-GRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~-g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
..+ .+.+|+++.|.|.+.+ .+.+.+.|+++ +..+....++.........+|.|.++..+|+|.|+|.+.+..+...
T Consensus 2 ~~~-~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 2 PSV-TVKEGESVTLSCEVSG--SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CcE-EEeCCCeEEEEEEEcc--CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 344 6789999999999995 47789999998 8888767788777666667899999999999999999998888777
Q ss_pred EEEEEEE
Q psy2145 136 VQATLQC 142 (808)
Q Consensus 136 ~~~~l~V 142 (808)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7766665
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-09 Score=89.07 Aligned_cols=71 Identities=23% Similarity=0.465 Sum_probs=58.3
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEe-cCCCCCeEEEeeCcEEEEEECCCCCCCCE-EEEEEEEeCCeeE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP-LEDSSRITTKHDFGYVAMDLSHVRAEDEG-IYICKATNALGEA 588 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~ 588 (808)
..|.+|+.+.|.|.. |.|.|.|.|.|++++.. +..+.|+.+..+ | .|.|.++..+|+| .|.|.|.|.....
T Consensus 13 v~V~eG~~~~L~C~p-P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 13 VEVEEGDSVVLPCNP-PKSAVPLRIYWMNSDLLHITQDERVSMGQN-G--NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred eEEecCCCEEEEecC-CCCCCCCEEEEECCCCccccccccEEECCC-c--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 368999999999973 48999999999988754 455667766655 3 7999999999999 8999999986433
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=85.22 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=57.8
Q ss_pred CCceEEEEEEeeCCCC--CcEEEEEECCEecCCC---C--CeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 519 GKNAHFSCRLIPVGDP--TLKVEWFRNEKPLEDS---S--RITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P--~~~v~W~k~g~~l~~~---~--~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
|+++.|.|.+ .++| ...+.|.+.+..+... . +... ......+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~--~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTA--RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEE--EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 7899999999 5544 5678999887644221 1 1111 11123458999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2145 591 TASMKIK 597 (808)
Q Consensus 591 s~~l~V~ 597 (808)
+..|.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 9999886
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.9e-09 Score=85.40 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=58.4
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc----cCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE-eCc
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI----KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV-NAL 264 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-n~~ 264 (808)
.+.+.+|++++|.|.. +.|.+.+.|||+ |... ....++.... + .|.|.+++.+|+|.|+|.|. |..
T Consensus 5 ~~~~~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~--~--~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 5 VVYGVENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE--R--GLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred EEEEecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEEec--C--eEEEeeCChhHCEEEEEEEEccCC
Confidence 3567899999999986 478889999983 3221 1233444322 2 69999999999999999998 577
Q ss_pred eeEEEEEEEEEe
Q psy2145 265 GQAVTSGNLLVH 276 (808)
Q Consensus 265 g~~~~~~~l~V~ 276 (808)
+.....++|.|.
T Consensus 78 ~~~~~~~~l~v~ 89 (91)
T cd05871 78 SQTLAKYTLHVI 89 (91)
T ss_pred eEEEEEEEEEEe
Confidence 777778888875
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-09 Score=80.28 Aligned_cols=63 Identities=30% Similarity=0.643 Sum_probs=51.5
Q ss_pred CCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 518 ~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
+|+.+.|.|.+ .+.|.+.+.|++++..+.. ....... ...|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~--~~~~~~~v~W~~~~~~~~~--~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA--EGDPVPNITWLKDGKPLPE--SNRLSAS--GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC--ccCCCCeEEEEECCEECCC--CCEEecC--CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999997 7899999999999998872 2222222 23799999999999999999999865
|
|
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=83.62 Aligned_cols=70 Identities=14% Similarity=0.322 Sum_probs=55.2
Q ss_pred CccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEe--------eccCcEEEEe-eCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV--------TIGHRFRPIH-DFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 58 ~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l--------~~~~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
++ .+.+|++++|+|.+.. .....+.|++-|..+ ..+.||.... ++..++|.|.+++.+|+|.|.|.+.
T Consensus 6 nv-tv~~G~ta~L~C~v~~--~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 6 DV-TVVEGEVAIISCRVKN--NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred ce-EEcCCCcEEEEEEEcc--CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 45 7899999999999995 445567888755332 3567888765 5667899999999999999999997
Q ss_pred ec
Q psy2145 129 NL 130 (808)
Q Consensus 129 n~ 130 (808)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 53
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=82.11 Aligned_cols=78 Identities=37% Similarity=0.666 Sum_probs=59.3
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
|.+...+ ..+.+|+++.|.|.+ .+.|...+.|++++..+..+.. .|.|.++..+|.|.|+|.|.+.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~--~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~ 67 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSV--SGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNG 67 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEE--ESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEET
T ss_pred cEEEccc--eEEeCCCcEEEEEEE--Ecccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeC
Confidence 4454444 568899999999999 4788899999999988763322 2667889999999999999996
Q ss_pred ce-eEEEEEEEEE
Q psy2145 264 LG-QAVTSGNLLV 275 (808)
Q Consensus 264 ~g-~~~~~~~l~V 275 (808)
.+ ..+.++.|+|
T Consensus 68 ~~~~~s~~~~v~V 80 (80)
T PF13895_consen 68 SGSNTSTSVNVTV 80 (80)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCCeEeeeEEeeC
Confidence 55 4445566654
|
... |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.2e-09 Score=84.92 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=60.7
Q ss_pred cccCCceEEEEEEEee---------CCCCCeEEEEEECCEEccCCCc-----EEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVP---------VGDPTMRFEWFVNGVELKMGSR-----FHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~---------~g~P~p~i~W~~~g~~l~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+.+|+.+.|.|..-. ...+...|.|||+|..+..... .++...+. .|.|.++..+|+|.|+|+
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEE
Confidence 5789999999998610 0233558999999876665431 24444444 899999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy2145 713 AINRAGEAVSSTSLKV 728 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V 728 (808)
+.|.-.-...++.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999888777777765
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=81.53 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=67.4
Q ss_pred ccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCCC--eEEEeeC---cEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSSR--ITTKHDF---GYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~~--~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+.|.+|+.+.|.|.+ .+.|.|+ +.|.+++..+..... +...... -.+.|.+.+++.+|+|.|+|.|.|+.++
T Consensus 13 ~~v~~gE~~~L~V~i--eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 13 IFVNAGENLDLIVEY--EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred EEEECCCCEEEEEEE--EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 468999999999999 8999998 999999887754433 2221111 2357999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2145 588 AVTTASMKIK 597 (808)
Q Consensus 588 ~~~s~~l~V~ 597 (808)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999999885
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=81.88 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=59.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.++.+|+++.|.|.. ..+...+.|++||.+|..+.++....++ |.|..+...|+|.|.|.|. +.|-...-+.
T Consensus 6 ~tv~~g~~v~L~C~~---~s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 6 RTVAPGADVVLPCQL---RSNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred EEEecCCCEEEECCC---CCCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 468899999999988 4457799999999999888887776653 8899999999999999986 4454444444
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
+.+
T Consensus 78 y~l 80 (85)
T cd05872 78 YSL 80 (85)
T ss_pred EEE
Confidence 333
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=84.19 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=55.3
Q ss_pred ccCCCCcEEEEEEE-eeC--CCCCceEEEEeCCEEeeccC-cEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 61 NLRERGHAHFECKL-EPV--TDSNLKVEWFKNGRPVTIGH-RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 61 ~v~~G~~v~l~C~~-~~~--~~p~~~v~W~~~g~~l~~~~-r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
.+.+|.+..|.|-- ..+ ..+.+.|+||||+.+|..+. ++....+. ..|.|.++..+|+|.|+|.|.+..|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~--~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGS--TYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCC--CEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 56789999999952 222 45777999999999988554 33322222 2699999999999999999999876543
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.4e-09 Score=79.55 Aligned_cols=62 Identities=32% Similarity=0.546 Sum_probs=49.0
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEE--EEEEccCCCCCcEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV--TLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~A 713 (808)
|+++.|.|.+. .+.|.+.|.|+|+|..+............... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVS-SGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEE-ESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecC-CCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 78999999993 58889999999999877655444443333321 3999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=79.16 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=50.1
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC----cEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF----GYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
++|+|... .|.|++.|+|||||++|..... . ...+ ...+|.|.....+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999975 8999999999999999965321 1 1111 12369999999999999999999998753
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-08 Score=80.69 Aligned_cols=69 Identities=19% Similarity=0.371 Sum_probs=55.3
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc--------cCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------KMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
..++.+|++++|.|.+ .+.....+.|++-|..+ ..++||.+.. ++...+|+|.+++.+|+|.|.|.+..
T Consensus 6 nvtv~~G~ta~L~C~v--~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 6 DVTVVEGEVAIISCRV--KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred ceEEcCCCcEEEEEEE--ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 3578899999999999 67666777887655332 3678888776 45677999999999999999999865
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=78.54 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=48.2
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeE--EEEEcccCcCCCeeEEEEE
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV--ALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a 127 (808)
|++++|.|.+.. +.+...|.|+|++..+............... +|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS-GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE-SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC-CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 899999999932 5788899999999877655444443333321 3999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=82.75 Aligned_cols=80 Identities=16% Similarity=0.341 Sum_probs=59.4
Q ss_pred cccCCCceEEEEEEee---------CCCCCcEEEEEECCEecCCCCC-----eEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIP---------VGDPTLKVEWFRNEKPLEDSSR-----ITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~---------~g~P~~~v~W~k~g~~l~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|+.+.|.|.... ...+...+.|+|++..+..... .++...+. .|.|.++..+|+|.|+|+
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEE
Confidence 5889999999998621 0233457999999866554331 13333333 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKI 596 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V 596 (808)
+.|+......++.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999887777777664
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=79.54 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=62.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
++.+|+.+.|.|.. ..+.+.+.|++||..+..+.++....++ |.|..++.+|+|.|.|.+. +.|.....+.+
T Consensus 7 tv~~g~~v~L~C~~---~s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y 78 (85)
T cd05872 7 TVAPGADVVLPCQL---RSNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVASY 78 (85)
T ss_pred EEecCCCEEEECCC---CCCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEEE
Confidence 68899999999987 4457799999999999877777666553 8899999999999999987 56777766666
Q ss_pred EEEe
Q psy2145 595 KIKT 598 (808)
Q Consensus 595 ~V~~ 598 (808)
.+..
T Consensus 79 ~l~v 82 (85)
T cd05872 79 SLNV 82 (85)
T ss_pred EEEE
Confidence 6654
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-08 Score=79.51 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=51.4
Q ss_pred EEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEE-EEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce--EEEEE
Q psy2145 654 AHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFH-VQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA--VSSTS 725 (808)
Q Consensus 654 v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~--~~s~~ 725 (808)
+.|.|.+ .| .|.+.|+|++||++|..+.... +..+++ .+.|.|.....+|.|.|+|.|.|..... ..+.+
T Consensus 2 ~~L~C~v--~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRA--RGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEE--eCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 6899999 55 7999999999999986542211 112222 3578888888889999999999987544 44444
Q ss_pred EE
Q psy2145 726 LK 727 (808)
Q Consensus 726 l~ 727 (808)
|.
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 43
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=81.61 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCceEEEEEEEeeC----CCCCeEEEEEECCE------E--ccC----------CCcEEEEEe-CCEEEEEEccCCCCCc
Q psy2145 650 EGQSAHYDCRVVPV----GDPTMRFEWFVNGV------E--LKM----------GSRFHVQHD-FGYVTLDITKCVPADS 706 (808)
Q Consensus 650 ~G~~v~l~C~v~~~----g~P~p~i~W~~~g~------~--l~~----------~~~~~~~~~-~~~~~L~I~~v~~~D~ 706 (808)
.|++|+|.|.+... +.....|.|+|... . +.. ..|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999998422 12356899998531 1 111 134444321 3457899999999999
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|.|.|.+.|..|..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999999975
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=79.93 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=54.7
Q ss_pred CceEEEEEEEeeC-CCCCeEEEEEECC-----------EEccC------CCcEEEEE---eCCEEEEEEccCCCCCcEEE
Q psy2145 651 GQSAHYDCRVVPV-GDPTMRFEWFVNG-----------VELKM------GSRFHVQH---DFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 651 G~~v~l~C~v~~~-g~P~p~i~W~~~g-----------~~l~~------~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y 709 (808)
|++|+|.|.+.+. ..-...|.|+|.. ..... .+|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7889999998422 1112467787743 22110 13444432 24567999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEE
Q psy2145 710 MCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V 728 (808)
+|.+.|..|..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999999888888888877
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=81.26 Aligned_cols=81 Identities=27% Similarity=0.399 Sum_probs=59.0
Q ss_pred CCceEEEEEEEeeCC----CCCeEEEEEECC------EEc--cCCCc------E--EEE---EeCCEEEEEEccCCCCCc
Q psy2145 650 EGQSAHYDCRVVPVG----DPTMRFEWFVNG------VEL--KMGSR------F--HVQ---HDFGYVTLDITKCVPADS 706 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g----~P~p~i~W~~~g------~~l--~~~~~------~--~~~---~~~~~~~L~I~~v~~~D~ 706 (808)
.|++|+|.|.+.+.. ...+.|.|+|.. ..+ ..+.. + ++. ...+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999994221 236799999962 111 11111 1 111 123568999999999999
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|.|.|.+.|..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999999999999999975
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=76.56 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=51.4
Q ss_pred cEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCC----eEEEEEcccCcCCCeeEEEEEEecCcce--EEEEE
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFG----YVALDIIDTIPEDSGTYTCRAVNLVGFA--EVQAT 139 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~--~~~~~ 139 (808)
.+.|.|.+.+ +.|.+.|+|+|+|++|..+.... ...+++ ...|.|.....+|.|.|+|+|.|..... +.+.+
T Consensus 1 ~~~L~C~v~g-~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARG-AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeC-ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999996 47888999999999886542211 122222 2468888888889999999999876443 34444
Q ss_pred E
Q psy2145 140 L 140 (808)
Q Consensus 140 l 140 (808)
|
T Consensus 80 l 80 (82)
T cd05759 80 L 80 (82)
T ss_pred E
Confidence 4
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-07 Score=79.34 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.+...+. ..|.+|++|+|.|.. ..+...+.|+|+|...... . .........|.|.+|+.+|+|.|+|.+.
T Consensus 2 kP~L~a~p~--~vV~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPS--SVVPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCC--CccCCCCcEEEEEec---CCCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 455555443 368899999999986 5788899999999865421 1 1112334589999999999999999999
Q ss_pred eC
Q psy2145 715 NR 716 (808)
Q Consensus 715 N~ 716 (808)
|.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 97
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=82.00 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=56.8
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCE---Ee-----------eccCcEEEEee--CCeEEEEEcccCcC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR---PV-----------TIGHRFRPIHD--FGYVALDIIDTIPE 118 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~---~l-----------~~~~r~~~~~~--~~~~~L~I~~~~~~ 118 (808)
.|..+ .+.+|++|+|.|.+.. .+...+.|||... +. ....|+.+..+ .+.++|.|.+++.+
T Consensus 4 ~~~~v-~~~~G~~v~L~C~~~~--~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 4 SPQSL-SVQEGENVTLNCNYST--STFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred cCCce-EEcCCCCEEEEEEECC--CCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 45566 8999999999999984 4777999998431 11 12356665543 37789999999999
Q ss_pred CCeeEEEEEEecC
Q psy2145 119 DSGTYTCRAVNLV 131 (808)
Q Consensus 119 D~G~Y~C~a~n~~ 131 (808)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998754
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=81.22 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=55.9
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCE---Ec-----------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV---EL-----------KMGSRFHVQHD--FGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y 709 (808)
..+.+|++|+|.|.+ .+.+...+.|||... +. ...+|+.+..+ .+..+|+|.+++.+|+|.|
T Consensus 8 v~~~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 8 LSVQEGENVTLNCNY--STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred eEEcCCCCEEEEEEE--CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 468899999999999 666888999998431 10 13467766543 4678999999999999999
Q ss_pred EEEEEeCCc
Q psy2145 710 MCKAINRAG 718 (808)
Q Consensus 710 ~C~A~N~~G 718 (808)
.|.+.|..|
T Consensus 86 ~C~~~~~~~ 94 (109)
T cd04983 86 FCALSESGG 94 (109)
T ss_pred EEEEecCCC
Confidence 999998754
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.6e-08 Score=76.84 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=48.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
|.+...... .+..+..++|.|.+ .+.| .+.|.|+ ++......... ......++|.|.++..+|.|.|+|.|+
T Consensus 2 P~I~~~~~~--~~~~~~~~~l~C~~--~~~~~~~~~~W~-~~~~~~~~~~~--~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 2 PQISVPPPP--VVTSGGSVTLTCSA--EGGPPPPSISWY-DSNPSFNSNSR--GSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp SEEEEESTS--EEETTEEEEEEEEE--SSEESSEEEEEE-TEEEEEEEEEE--EEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CEEEEcCCC--cEeeceeEEEEEEE--ccccCCeEEEEE-ecCCceeeeee--eccceeeEEEEccCCHHhCcEEEEEEE
Confidence 555555443 22233339999999 6777 9999999 22211111111 112234589999999999999999999
Q ss_pred e
Q psy2145 715 N 715 (808)
Q Consensus 715 N 715 (808)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 8
|
... |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=79.14 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=59.6
Q ss_pred CCceEEEEEEEeeCCCC----------CeEEEEEEC--CEE---cc-C----------CCcEEEEE---eCCEEEEEEcc
Q psy2145 650 EGQSAHYDCRVVPVGDP----------TMRFEWFVN--GVE---LK-M----------GSRFHVQH---DFGYVTLDITK 700 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P----------~p~i~W~~~--g~~---l~-~----------~~~~~~~~---~~~~~~L~I~~ 700 (808)
.|++|+|.|.+.....+ .+.|.|+|- |.. +. . .+|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 38999999999521111 469999983 311 10 0 13555544 33567999999
Q ss_pred CCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 701 CVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 701 v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
++.+|+|.|.|.+.+..........|.|++
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888888888875
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=78.16 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=58.3
Q ss_pred CCCcEEEEEEEeeCC----CCCceEEEEeCCE------E-e-ec----------cCcEEEEee-CCeEEEEEcccCcCCC
Q psy2145 64 ERGHAHFECKLEPVT----DSNLKVEWFKNGR------P-V-TI----------GHRFRPIHD-FGYVALDIIDTIPEDS 120 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~----~p~~~v~W~~~g~------~-l-~~----------~~r~~~~~~-~~~~~L~I~~~~~~D~ 120 (808)
.|++|+|.|.+.... .....|.|+|... . + .. ..|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987421 2346799999531 1 1 11 134443222 3456899999999999
Q ss_pred eeEEEEEEecCcceEEEEEEEEec
Q psy2145 121 GTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
|.|+|.+.+..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888888888888853
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-07 Score=78.01 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=54.4
Q ss_pred CCcEEEEEEEeeC-CCCCceEEEEeCC--EEee---c------------cCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 65 RGHAHFECKLEPV-TDSNLKVEWFKNG--RPVT---I------------GHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 65 G~~v~l~C~~~~~-~~p~~~v~W~~~g--~~l~---~------------~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
|++|+|.|.+.+. ......|.|+|.. ..+. . ..|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999999741 1122478898844 1111 0 12444322 23567999999999999999
Q ss_pred EEEEEecCcceEEEEEEEE
Q psy2145 124 TCRAVNLVGFAEVQATLQC 142 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l~V 142 (808)
+|.+.|..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999988777777777766
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=78.61 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCCccccCCCCcEEEEEEEeeCC--CCCceEEEE---------------eCCEEeec-----cCcEEEEe--eCCeEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVT--DSNLKVEWF---------------KNGRPVTI-----GHRFRPIH--DFGYVAL 110 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~--~p~~~v~W~---------------~~g~~l~~-----~~r~~~~~--~~~~~~L 110 (808)
.|..+ .+..|+.++|.|.+.... .+.+.|.|. ++|+.... ..|+.... ..+..+|
T Consensus 4 ~~~ev-~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI 82 (116)
T cd05879 4 TDREV-YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSI 82 (116)
T ss_pred ccceE-EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEE
Confidence 45666 889999999999998521 245799993 34444321 12444332 2366799
Q ss_pred EEcccCcCCCeeEEEEEEecCcceEEEEE
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 139 (808)
.|.+++.+|+|.|+|.+.|..+......+
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~ 111 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDIVGKSSQ 111 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCcCCceeE
Confidence 99999999999999999987654333333
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=77.00 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=57.9
Q ss_pred CCCcEEEEEEEeeCC----CCCceEEEEeCC-----E-Eee--ccCc------E--EEE---eeCCeEEEEEcccCcCCC
Q psy2145 64 ERGHAHFECKLEPVT----DSNLKVEWFKNG-----R-PVT--IGHR------F--RPI---HDFGYVALDIIDTIPEDS 120 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~----~p~~~v~W~~~g-----~-~l~--~~~r------~--~~~---~~~~~~~L~I~~~~~~D~ 120 (808)
.|++|+|.|.+.... ...+.|.|+|.. . .+. .+.+ + +.. ...+..+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999998521 235699999962 1 111 1111 1 111 134667999999999999
Q ss_pred eeEEEEEEecCcceEEEEEEEEec
Q psy2145 121 GTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999878788888888863
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-07 Score=76.01 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=55.5
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCE-----Ec---c-----------CCCceEEEecCceEEEEEccCC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-----PI---K-----------SGSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~-----~l---~-----------~~~~~~~~~~~~~~~L~I~~~~ 249 (808)
.+.+..+.+|++|.|.|.. ...+...+.|||... .| . -..|..+..+ | +|.|.+++
T Consensus 4 e~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n-g--SL~I~~v~ 78 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN-G--SLLIQNVT 78 (105)
T ss_pred eccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC-C--cEEEecCC
Confidence 4445568899999999986 355667999999521 11 0 1223333332 3 89999999
Q ss_pred CCCcEEEEEEEEeCc-eeEEEEEEEE
Q psy2145 250 PEDSGVYTCRAVNAL-GQAVTSGNLL 274 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~-g~~~~~~~l~ 274 (808)
.+|+|.|+|.+.+.. ........|.
T Consensus 79 ~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 79 QKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred cccCEEEEEEEEeCCccEEEEEEEEE
Confidence 999999999999866 3344445544
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-07 Score=77.22 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCCcEEEEEEEeeCCCC----------CceEEEEeC--CE---Eee-c----------cCcEEEEe---eCCeEEEEEcc
Q psy2145 64 ERGHAHFECKLEPVTDS----------NLKVEWFKN--GR---PVT-I----------GHRFRPIH---DFGYVALDIID 114 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p----------~~~v~W~~~--g~---~l~-~----------~~r~~~~~---~~~~~~L~I~~ 114 (808)
.|++|+|.|.......+ .+.|.|+|. |. .+. . ..|+.+.. ..+..+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999842111 469999983 21 111 1 13555543 33667999999
Q ss_pred cCcCCCeeEEEEEEecCcceEEEEEEEEe
Q psy2145 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 143 (808)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999866666777777765
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=76.58 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC-----EEee--------------ccCcEEEEeeCCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG-----RPVT--------------IGHRFRPIHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-----~~l~--------------~~~r~~~~~~~~~~~L~I~~~~~~D~G 121 (808)
.+.+|++|.|.|... +.+...+.|||+. ..|. ...|..+..++ +|.|.+++.+|+|
T Consensus 9 ~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCE
Confidence 578999999999865 3566699999952 2221 12344444333 7999999999999
Q ss_pred eEEEEEEecC-cceEEEEEEE
Q psy2145 122 TYTCRAVNLV-GFAEVQATLQ 141 (808)
Q Consensus 122 ~Y~C~a~n~~-g~~~~~~~l~ 141 (808)
.|+|.+.+.. ........|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 9999999876 3444445443
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-07 Score=76.79 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCcEEEEEEEeeCCCC--------CceEEEEeC--CEEee----c----------cCcEEEE---eeCCeEEEEEcccCc
Q psy2145 65 RGHAHFECKLEPVTDS--------NLKVEWFKN--GRPVT----I----------GHRFRPI---HDFGYVALDIIDTIP 117 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p--------~~~v~W~~~--g~~l~----~----------~~r~~~~---~~~~~~~L~I~~~~~ 117 (808)
|++|+|.|.+.....+ ...|.|+|. ++.+. . .+|+.+. .+.+..+|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 8999999999742111 368999984 22211 0 1244442 234667899999999
Q ss_pred CCCeeEEEEEEecCcceEEEEEEEEec
Q psy2145 118 EDSGTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
+|+|.|.|.+.......+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998767778888888853
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=78.70 Aligned_cols=70 Identities=29% Similarity=0.493 Sum_probs=54.5
Q ss_pred cccCCceEEEEEEEeeCCC-CCeEEEEEECCE-----Ec------------cCCCcEEEEEeC--CEEEEEEccCCCCCc
Q psy2145 647 EIMEGQSAHYDCRVVPVGD-PTMRFEWFVNGV-----EL------------KMGSRFHVQHDF--GYVTLDITKCVPADS 706 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~-P~p~i~W~~~g~-----~l------------~~~~~~~~~~~~--~~~~L~I~~v~~~D~ 706 (808)
.+.+|++|+|.|.+ .+. +...+.|+|... .+ ...+|+.+..+. +..+|+|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTY--SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEE--eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 46789999999999 454 788999998432 11 123566665554 678999999999999
Q ss_pred EEEEEEEEeCCc
Q psy2145 707 GVYMCKAINRAG 718 (808)
Q Consensus 707 G~Y~C~A~N~~G 718 (808)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998876
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-07 Score=77.07 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=53.8
Q ss_pred cCceeecCCCeEEEEEEEeecC--CCCeEEEE---------------eeCCEEccC-C----CceEEEe--cCceEEEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVS--DNTMKVEW---------------FHNNVPIKS-G----SRFTETN--NFGFVALDI 245 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~--~p~~~v~W---------------~~~g~~l~~-~----~~~~~~~--~~~~~~L~I 245 (808)
+..+.+..|+.++|.|.+.... .+.+.|.| |++|..... . .|..... ..+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 4457788999999999996322 34689999 334444321 1 2333222 236679999
Q ss_pred ccCCCCCcEEEEEEEEeCce
Q psy2145 246 MQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~~g 265 (808)
.+++.+|.|.|+|.+.|..+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999999654
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-07 Score=79.31 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=55.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EEee----------------ccCcEEEEeeC-CeEEEEEcc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RPVT----------------IGHRFRPIHDF-GYVALDIID 114 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~l~----------------~~~r~~~~~~~-~~~~L~I~~ 114 (808)
..|..+ .+.+|++|+|.|.+.. +...+.|||.. ..+. ...|+....+. ..++|.|.+
T Consensus 3 Q~p~~~-~v~~G~~v~l~C~~~~---~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYL-IKGRGQSVTLRCSQTS---GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKS 78 (110)
T ss_pred ECCCce-EEcCCCcEEEEEEECC---CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECC
Confidence 356677 8999999999999973 56789999943 1111 12455554433 567999999
Q ss_pred cCcCCCeeEEEEEEecC
Q psy2145 115 TIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~ 131 (808)
++.+|+|.|.|.+.+..
T Consensus 79 ~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 79 AEPEDSAVYLCASSLGG 95 (110)
T ss_pred CChhhCEEEEEEeeCCC
Confidence 99999999999998653
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-07 Score=75.68 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=53.6
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.+...+.. .|.+|++|+|.|.. ..+...+.|+|+|...... . .........|.|.+++.+|+|.|+|.+.|
T Consensus 3 P~L~a~p~~--vV~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 3 PSLWAEPSS--VVPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred CEEEecCCC--ccCCCCcEEEEEec---CCCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEEC
Confidence 444444333 48899999999985 5778889999999864421 1 11122334799999999999999999998
Q ss_pred C
Q psy2145 584 A 584 (808)
Q Consensus 584 ~ 584 (808)
.
T Consensus 75 ~ 75 (91)
T cd05751 75 G 75 (91)
T ss_pred C
Confidence 6
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.5e-07 Score=78.23 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=53.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCE-----Eee------------ccCcEEEEeeC--CeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGR-----PVT------------IGHRFRPIHDF--GYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~-----~l~------------~~~r~~~~~~~--~~~~L~I~~~~~~D~G 121 (808)
.+.+|++++|.|.+... .+...+.|||... .+. ...|+.+..+. +.++|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 57899999999999841 2667899998432 111 12456555444 6789999999999999
Q ss_pred eEEEEEEecCc
Q psy2145 122 TYTCRAVNLVG 132 (808)
Q Consensus 122 ~Y~C~a~n~~g 132 (808)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-07 Score=77.82 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=55.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC-CceEEEEeCC-----EEee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS-NLKVEWFKNG-----RPVT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p-~~~v~W~~~g-----~~l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
...|..+ .+.+|++|+|.|.+.. .. ...+.|||.. ..|. ...|+....+...+.|.|.+++.
T Consensus 4 ~Q~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~ 80 (106)
T cd04980 4 TQSPATL-SVSPGESATISCKASQ--SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP 80 (106)
T ss_pred EECCCcE-EECCCCCEEEEEEECC--CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh
Confidence 3456676 8999999999999974 33 5689999832 1121 12356655555667899999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998653
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=75.24 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=58.8
Q ss_pred CceEEEEEEEeeCCCC--------CeEEEEEEC--CEEcc----------C----CCcEEEEE---eCCEEEEEEccCCC
Q psy2145 651 GQSAHYDCRVVPVGDP--------TMRFEWFVN--GVELK----------M----GSRFHVQH---DFGYVTLDITKCVP 703 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P--------~p~i~W~~~--g~~l~----------~----~~~~~~~~---~~~~~~L~I~~v~~ 703 (808)
|++|+|.|.+.....+ ...|.|+|. |+.+. . .+|+.+.. +.+..+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 8999999999522211 378999984 22110 0 13444432 24568999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+|+|+|.|.+....+..+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999888889999999876
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=73.19 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=53.2
Q ss_pred ceEEEEEEEeeCC-CCCeEEEEEECCEE---------------ccC--CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEE
Q psy2145 652 QSAHYDCRVVPVG-DPTMRFEWFVNGVE---------------LKM--GSRFHVQHD-FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 652 ~~v~l~C~v~~~g-~P~p~i~W~~~g~~---------------l~~--~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
++|+|.|.+...+ .+...|.|+|.... +.. ..|..+... .+..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4799999994222 13558999995421 111 122222221 1457999999999999999999
Q ss_pred EEe-CCcceEEEEEEEE
Q psy2145 713 AIN-RAGEAVSSTSLKV 728 (808)
Q Consensus 713 A~N-~~G~~~~s~~l~V 728 (808)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6789999998887
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.44 E-value=7e-07 Score=77.61 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=53.3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECC--EEcc----------------CCCcEEEEEeC-CEEEEEEccCCCCCc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG--VELK----------------MGSRFHVQHDF-GYVTLDITKCVPADS 706 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g--~~l~----------------~~~~~~~~~~~-~~~~L~I~~v~~~D~ 706 (808)
..+.+|++|+|.|.+ .+ +.+.|.|||.. ..+. ...|+.+..+. ...+|+|.+++.+|+
T Consensus 8 ~~v~~G~~v~l~C~~--~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 8 LIKGRGQSVTLRCSQ--TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred eEEcCCCcEEEEEEE--CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 468899999999999 56 77899999842 1111 13466654433 567999999999999
Q ss_pred EEEEEEEEeCCc
Q psy2145 707 GVYMCKAINRAG 718 (808)
Q Consensus 707 G~Y~C~A~N~~G 718 (808)
|.|.|.+.+..|
T Consensus 85 g~Y~Ca~~~~~~ 96 (110)
T cd05899 85 AVYLCASSLGGG 96 (110)
T ss_pred EEEEEEeeCCCC
Confidence 999999987643
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=73.80 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=52.8
Q ss_pred CcEEEEEEEeeCCC-CCceEEEEeCCE----Eee-----------c--cCcEEEEee-CCeEEEEEcccCcCCCeeEEEE
Q psy2145 66 GHAHFECKLEPVTD-SNLKVEWFKNGR----PVT-----------I--GHRFRPIHD-FGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 66 ~~v~l~C~~~~~~~-p~~~v~W~~~g~----~l~-----------~--~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
++|+|.|.+..... ....|.|+|... .+. . ..|..+..+ .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 57999999985211 345799999542 110 1 122222211 1567999999999999999999
Q ss_pred EEe-cCcceEEEEEEEE
Q psy2145 127 AVN-LVGFAEVQATLQC 142 (808)
Q Consensus 127 a~n-~~g~~~~~~~l~V 142 (808)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 6688888888877
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-07 Score=72.24 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=50.6
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
+|.|...+.......+. +.|.|.+. +.+ .+.++|+ +........ .........+|.|.++..+|.|.|+|.|+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~--~~~~~~~~~W~-~~~~~~~~~--~~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAE--GGPPPPSISWY-DSNPSFNSN--SRGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEES--SEESSEEEEEE-TEEEEEEEE--EEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEc--cccCCeEEEEE-ecCCceeee--eeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 46777777776665555 99999994 555 8999999 111111111 11111223379999999999999999998
Q ss_pred e
Q psy2145 262 N 262 (808)
Q Consensus 262 n 262 (808)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 7
|
... |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.3e-07 Score=78.06 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=56.0
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe---e--------------ccCcEEEEeeC--CeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV---T--------------IGHRFRPIHDF--GYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l---~--------------~~~r~~~~~~~--~~~~L~I~ 113 (808)
.|..+ .+.+|++|+|.|.+.....+...+.|||. |..+ . ...|+.+..+. ..+.|.|.
T Consensus 4 ~p~~~-~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 4 PQLSI-TREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred cCCeE-EeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 35566 89999999999999742246678999993 2211 0 13577766665 67899999
Q ss_pred ccCcCCCeeEEEEEEe
Q psy2145 114 DTIPEDSGTYTCRAVN 129 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n 129 (808)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=73.71 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-------------cCcE--EEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-------------GHRF--RPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-------------~~r~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
..|++|+|.|.... +.....+.|+|....+.. +.+| +...+.+..+|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~-~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPD-GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCC-CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 47999999998863 245568999986533221 1122 1223445578999999999999999999
Q ss_pred EecCcce-EEEEEEEE
Q psy2145 128 VNLVGFA-EVQATLQC 142 (808)
Q Consensus 128 ~n~~g~~-~~~~~l~V 142 (808)
.+..|.. .....|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9876544 44455554
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-06 Score=67.21 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=53.4
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCc-ceEEEEEEEEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAG-EAVSSTSLKVK 729 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~s~~l~V~ 729 (808)
+.|.|.+. .+.|.+.|+|||+|++|...........++ .++|.|..-..+|...|+|.|.|.+= ....+..|.|.
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 68999996 678999999999999997643221112122 45788876666677789999999752 24556666665
Q ss_pred e
Q psy2145 730 S 730 (808)
Q Consensus 730 ~ 730 (808)
.
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=73.21 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=55.6
Q ss_pred cCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-------------CCcE--EEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-------------GSRF--HVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-------------~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
..|++|+|.|... .+.....|.|+|++..+.. +++| ++.-+.+..+|+|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~-~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIP-DGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCC-CCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 3699999999873 2255678999987532211 1122 1222344579999999999999999999
Q ss_pred EeCCcce-EEEEEEEE
Q psy2145 714 INRAGEA-VSSTSLKV 728 (808)
Q Consensus 714 ~N~~G~~-~~s~~l~V 728 (808)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9988765 44566665
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=74.46 Aligned_cols=74 Identities=23% Similarity=0.438 Sum_probs=54.0
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCC--EE---cc---------CCCceEEEecCceEEEEEccCCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN--VP---IK---------SGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g--~~---l~---------~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
...|..+.+.+|++|+|.|.+. +.. ...+.|||.. .. |. ...++..........|.|.+++.+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 4 TQSPATLSVSPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EECCCcEEECCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 3456678899999999999983 333 5679999832 11 11 123555544556678999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 Dsg~Y~Ca~~~ 92 (106)
T cd04980 82 DAAVYYCQQYG 92 (106)
T ss_pred HCEEEEEEEeC
Confidence 99999999865
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=75.19 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=52.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCC---CceEEEEeC----CEE--ee---------ccCcE----EEEe--eCCeEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDS---NLKVEWFKN----GRP--VT---------IGHRF----RPIH--DFGYVA 109 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~----g~~--l~---------~~~r~----~~~~--~~~~~~ 109 (808)
..|..+ .+.+|++++|.|.... ..+ ...|.||+. +.+ +. ...+| .... ..+.++
T Consensus 3 ~~~~~v-~~~~G~~v~L~C~~s~-~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~s 80 (115)
T cd05880 3 YTSKEV-EAVNGTDVRLKCTFSS-SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDAS 80 (115)
T ss_pred ecCceE-EEEcCCCEEEEEEEEe-CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceE
Confidence 356777 8999999999999874 122 357999751 221 21 01122 2211 235578
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
|.|.+++.+|+|.|.|.+.|..+.
T Consensus 81 L~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 81 ILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEEeeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999999987553
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=69.55 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=45.5
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.|.|.+. .+.|.+.|.|++||++|..........+++ .+.|.+.....+|.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 68999995 466999999999999997443111111222 2356665555566779999999997643
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=74.80 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=49.8
Q ss_pred ccccCCceEEEEEEEeeCCCC---CeEEEEEE----CCEE--cc---------CCCcE----EEEE--eCCEEEEEEccC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDP---TMRFEWFV----NGVE--LK---------MGSRF----HVQH--DFGYVTLDITKC 701 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~----~g~~--l~---------~~~~~----~~~~--~~~~~~L~I~~v 701 (808)
+.+.+|++++|.|.+.. ..+ .+.|.|++ ++.+ +. ...+| .+.. ..+..+|.|.++
T Consensus 8 v~~~~G~~v~L~C~~s~-~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 8 VEAVNGTDVRLKCTFSS-SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred EEEEcCCCEEEEEEEEe-CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 56889999999999852 222 45799985 1221 10 11222 2221 234578999999
Q ss_pred CCCCcEEEEEEEEeCCcc
Q psy2145 702 VPADSGVYMCKAINRAGE 719 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N~~G~ 719 (808)
+.+|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999998764
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=75.64 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=53.6
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCC--CCceEEEEeCC------EEee----------cc----CcEEEEe--eCCeEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTD--SNLKVEWFKNG------RPVT----------IG----HRFRPIH--DFGYVA 109 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~--p~~~v~W~~~g------~~l~----------~~----~r~~~~~--~~~~~~ 109 (808)
..|..+ .+.+|++|+|.|.+..... ....+.|++.. ..+. .. .|+.+.. ..+.++
T Consensus 3 ~~p~~v-~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 81 (116)
T cd05715 3 YTPREV-YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDAS 81 (116)
T ss_pred ecCCeE-EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeE
Confidence 457777 8999999999999974211 23579998621 1111 11 1222222 134578
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
|.|.+++.+|+|.|.|.+.|....
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999999987553
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=72.89 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=50.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
+..+... .|.+|++|+|.|... .+...+.|||+|.....-.............|.|.+++.+|+|.|+|...
T Consensus 4 l~a~p~~-vV~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 4 LSAHPSP-VVPSGENVTLQCHSD---IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEecCCC-ccCCCCeEEEEEecC---CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4445555 789999999999876 25568999998865321100000112234479999999999999999975
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=72.09 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=51.4
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccC------------------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKM------------------GSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~------------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
|++|+|.|.+ ...+...|.|+|+...... ..|+.+..+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~--~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSN--LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEccc--CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 7899999998 5577789999997532210 123333322 5899999999999999999
Q ss_pred EEeCCcce-EEEEEEE
Q psy2145 713 AINRAGEA-VSSTSLK 727 (808)
Q Consensus 713 A~N~~G~~-~~s~~l~ 727 (808)
+.+..|.. ...+.|.
T Consensus 76 v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 76 IISTNGVTENAKFFLR 91 (92)
T ss_pred EEcCCCcEEEEEEEEE
Confidence 99887543 3344444
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.1e-06 Score=70.24 Aligned_cols=79 Identities=22% Similarity=0.437 Sum_probs=56.7
Q ss_pred CCcEEEEEEEeeC---------CCCCceEEEEeC-----CE-----Ee--ecc----------CcEEEEee---CCeEEE
Q psy2145 65 RGHAHFECKLEPV---------TDSNLKVEWFKN-----GR-----PV--TIG----------HRFRPIHD---FGYVAL 110 (808)
Q Consensus 65 G~~v~l~C~~~~~---------~~p~~~v~W~~~-----g~-----~l--~~~----------~r~~~~~~---~~~~~L 110 (808)
|++++|.|.+.-. ....+.|+|++- |. .+ ..+ .|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 7899999999831 112459999873 11 11 111 24444322 366899
Q ss_pred EEcccCcCCCeeEEEEEEecCcceEEEEEEEEe
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 143 (808)
.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999987777888888875
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=72.31 Aligned_cols=68 Identities=16% Similarity=0.352 Sum_probs=52.5
Q ss_pred cccCCceEEEEEEEeeCCC--CCeEEEEEEC--CEEc------------cCCCcEEEEEeCCEEEEEEccCCCCCcEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGD--PTMRFEWFVN--GVEL------------KMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~--P~p~i~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 710 (808)
.+.+|++|+|.|.+ .+. ....+.||+. |..+ ...+|+.+..+.+..+|+|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~--~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTG--SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEE--cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEE
Confidence 46789999999998 454 5678999973 2111 1134787777778889999999999999999
Q ss_pred EEEEeC
Q psy2145 711 CKAINR 716 (808)
Q Consensus 711 C~A~N~ 716 (808)
|.+.|.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998764
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-06 Score=71.97 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=46.4
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeec------------------cCcEEEEeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTI------------------GHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~------------------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
|++|+|.|.+.+ .+...|.|+|+...... ..|+.+..+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~--~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLP--ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCC--CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 899999999884 56669999996533210 123333222 5899999999999999999
Q ss_pred EEecCc
Q psy2145 127 AVNLVG 132 (808)
Q Consensus 127 a~n~~g 132 (808)
+....|
T Consensus 76 v~~~~~ 81 (92)
T cd05741 76 IISTNG 81 (92)
T ss_pred EEcCCC
Confidence 987653
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=75.68 Aligned_cols=69 Identities=26% Similarity=0.443 Sum_probs=54.2
Q ss_pred ccccCCceEEEEEEEeeCC--CCCeEEEEEEC--CEEc-----------------cCCCcEEEEEeC--CEEEEEEccCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVG--DPTMRFEWFVN--GVEL-----------------KMGSRFHVQHDF--GYVTLDITKCV 702 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g--~P~p~i~W~~~--g~~l-----------------~~~~~~~~~~~~--~~~~L~I~~v~ 702 (808)
..+.+|++|+|.|.+ .+ .+.+.+.|||. |..+ ....|+.+..+. ...+|+|.+++
T Consensus 8 ~~~~~G~~v~l~C~~--~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 8 ITREESKSVTISCKV--SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred EEeCCCCCEEEEEEE--eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 457889999999999 45 68889999984 2211 024677777665 67899999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 703 PADSGVYMCKAINR 716 (808)
Q Consensus 703 ~~D~G~Y~C~A~N~ 716 (808)
.+|+|.|.|.+.+.
T Consensus 86 ~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 86 KEDSATYYCAYWES 99 (116)
T ss_pred HHHCEEEEEEEecC
Confidence 99999999998643
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=101.39 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=134.0
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccC---CCCe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT---QAPI 185 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~P~ 185 (808)
++.|.+...++.+.|+|...+..+.....+...+..... .|.... +..... ..|.
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~---------------------~~~p~~-~~~aaa~~~~~~v 336 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKG---------------------KPGPES-LQAAAARPPEVPV 336 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeecccc---------------------ccCchh-hhhhccCCccccc
Confidence 456666666667777777776666655554444321111 000000 000111 2333
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeE-EEEeeCCEEccCCC--ceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMK-VEWFHNNVPIKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+......+.+..+..+.+.|.. .+.+.+. +.||+++.....+. .+..........+.|..+...+.+.|.|.|.|
T Consensus 337 ~~~~~~~v~a~d~~~v~m~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n 414 (1205)
T KOG0613|consen 337 GLVRNLSVTARDNTLVEMPTAL--SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVN 414 (1205)
T ss_pred cccccceeccccCcceeecccc--cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceec
Confidence 3344445667788889999998 5666665 99999877655443 22222333344788999999999999999999
Q ss_pred CceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecC--CeEEEEEEEe
Q psy2145 263 ALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAEN--QAAHFEARLI 340 (808)
Q Consensus 263 ~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G--~~~~l~C~~~ 340 (808)
..|........+|.... ....|.+...........+ +.+.+.|.+
T Consensus 415 ~~g~~~~~~~~~vs~~~--------------------------------~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~- 461 (1205)
T KOG0613|consen 415 KGGTEQTIAESTVSEEM--------------------------------PGTQPPKFKKDVSTTDLLTVKDEITVRTPD- 461 (1205)
T ss_pred cCCcccccchhhccccc--------------------------------CCCCCccccccccccccccCCcccccccCC-
Confidence 98877766555554321 1112222222222222233 778888887
Q ss_pred ecCCC--ccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 341 PVGDS--KLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 341 ~~g~p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.+.+ ...++|++++-+. ..+..........+|.+.-....|.|.|.-......|
T Consensus 462 -~s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 462 -SSTSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred -CCccccceeEeeccCCccc--ccccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence 5666 4455666655443 3333333444556788888889999999665544333
|
|
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-06 Score=65.53 Aligned_cols=76 Identities=16% Similarity=0.331 Sum_probs=54.2
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC---cEEEEEECCCCCCCCEEEEEEEEeCCe-eEEEEEEEEEE
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF---GYVAMDLSHVRAEDEGIYICKATNALG-EAVTTASMKIK 597 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~s~~l~V~ 597 (808)
+.|+|.+. .+.|.+.|+|||+|+++...........+ ...+|.|..-..+|...|+|.|.|+.- ....+..|.|.
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 68999986 78999999999999999764322111212 234688877777788899999999642 24555666665
Q ss_pred e
Q psy2145 598 T 598 (808)
Q Consensus 598 ~ 598 (808)
.
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-06 Score=71.76 Aligned_cols=69 Identities=20% Similarity=0.346 Sum_probs=51.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC---EE--ee---------ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG---RP--VT---------IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g---~~--l~---------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
.|.+|++|+|.|.+.........+.|||.. .+ |. ...|+....+.+...|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 688999999999987411145679999822 11 11 12477776677778999999999999999999
Q ss_pred EEe
Q psy2145 127 AVN 129 (808)
Q Consensus 127 a~n 129 (808)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.6e-06 Score=73.89 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=55.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---ee---------ccCcEEEEe--eCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VT---------IGHRFRPIH--DFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~---------~~~r~~~~~--~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|.+.. ......+.|||. +.. |. ...|+.+.. ..+.++|.|.+++.
T Consensus 4 q~~~~v-~~~~G~~v~L~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 4 QAQPDV-SVQVGEEVTLNCRYET-SWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred EeCCce-EEcCCCCEEEEEEEeC-CCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 456666 8999999999999874 224568999982 221 11 135677653 34568999999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999985
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=69.03 Aligned_cols=80 Identities=25% Similarity=0.455 Sum_probs=58.1
Q ss_pred CceEEEEEEEeeC---------CCCCeEEEEEEC-----CEE-----c--cCC----------CcEEEEEe---CCEEEE
Q psy2145 651 GQSAHYDCRVVPV---------GDPTMRFEWFVN-----GVE-----L--KMG----------SRFHVQHD---FGYVTL 696 (808)
Q Consensus 651 G~~v~l~C~v~~~---------g~P~p~i~W~~~-----g~~-----l--~~~----------~~~~~~~~---~~~~~L 696 (808)
|++++|.|.+.-. ....+.|.|++- |+. + ..+ +|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 6789999999511 112458999873 221 1 111 23444322 256899
Q ss_pred EEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 697 DITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 697 ~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
.|.+++..|+|.|+|.+.+.......++.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999999999999999975
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=69.53 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCce--EEEEeCCEEeeccCcEEE---EeeCCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLK--VEWFKNGRPVTIGHRFRP---IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~--v~W~~~g~~l~~~~r~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.+.+|+.++|+|.+.+ +.|... |.|||+++.|... .+.. .......+|.+.....+|.-.|+|+|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g-~~P~a~L~i~W~rG~~~l~~~-~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPG-VAPRQNLTVVLLRGNETLSRQ-PFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcC-cCCCCcEEEEEeeCCEEcccc-eeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 5789999999999997 678776 7999999998643 2211 11223457887655555555899999987654
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.8e-06 Score=67.23 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=46.0
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCc----EEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG----YVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+.|+|.+. .+.|.+.|+|+++|++|...........++ ...|.+.....+|.+.|+|.|.|....
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999995 566999999999999986443211112222 224667666677788999999998654
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.6e-06 Score=69.43 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCcEEEEEEEeeCCC-----CCceEEEEeC-----CEEee----c----------cCcEEEEee---CCeEEEEEcccCc
Q psy2145 65 RGHAHFECKLEPVTD-----SNLKVEWFKN-----GRPVT----I----------GHRFRPIHD---FGYVALDIIDTIP 117 (808)
Q Consensus 65 G~~v~l~C~~~~~~~-----p~~~v~W~~~-----g~~l~----~----------~~r~~~~~~---~~~~~L~I~~~~~ 117 (808)
|++|+|.|.+..... ..+.|.|+|. ...+. . ..|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 789999999762111 2479999984 11111 1 134444332 3678999999999
Q ss_pred CCCeeEEEEEEecCcceEEEEEEEEe
Q psy2145 118 EDSGTYTCRAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~~~~~l~V~ 143 (808)
+|+|.|+|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876667778888875
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-06 Score=66.23 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=46.7
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-C----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-G----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.|.|.+. .+.|.+.|+|++||++|...........+ + .++|.|.....+|...|+|.|.+.....
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 68999994 45699999999999998764332222222 2 2456665666677789999999987543
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=68.35 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=53.1
Q ss_pred eEEEEEEEeeCCCC-CeEEEEEEC--CE---Ec---cC----------CCcEEEEE--eCCEEEEEEccCCCCCcEEEEE
Q psy2145 653 SAHYDCRVVPVGDP-TMRFEWFVN--GV---EL---KM----------GSRFHVQH--DFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 653 ~v~l~C~v~~~g~P-~p~i~W~~~--g~---~l---~~----------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
+|+|.|.......+ ...|.|+|. |. .+ .. .+|..+.. ..+..+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 68999999522212 458999983 31 11 10 13444443 2345689999999999999999
Q ss_pred EEEe-CCcceEEEEEEEE
Q psy2145 712 KAIN-RAGEAVSSTSLKV 728 (808)
Q Consensus 712 ~A~N-~~G~~~~s~~l~V 728 (808)
.+.| ..|..+..+.|+|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9999 7788777888877
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=70.55 Aligned_cols=83 Identities=22% Similarity=0.395 Sum_probs=59.8
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCE-----Ecc--------------CCCcEEEEEe--CCEEEEEEccCCC
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV-----ELK--------------MGSRFHVQHD--FGYVTLDITKCVP 703 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~~L~I~~v~~ 703 (808)
...+.+|+++.|.|... .......+.|++... .+. ..+++.+..+ .+..+|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp EEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred eEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 45688999999999994 256778999998321 111 0234555544 3478999999999
Q ss_pred CCcEEEEEEEEeC-CcceEEEEEEEE
Q psy2145 704 ADSGVYMCKAINR-AGEAVSSTSLKV 728 (808)
Q Consensus 704 ~D~G~Y~C~A~N~-~G~~~~s~~l~V 728 (808)
+|+|.|.|.+... .+.....+.|+|
T Consensus 89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 89 SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999887 444455566655
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=68.19 Aligned_cols=77 Identities=22% Similarity=0.434 Sum_probs=52.9
Q ss_pred CcEEEEEEEeeCCCC-CceEEEEeC--CE---Eee--c-----------cCcEEEEe--eCCeEEEEEcccCcCCCeeEE
Q psy2145 66 GHAHFECKLEPVTDS-NLKVEWFKN--GR---PVT--I-----------GHRFRPIH--DFGYVALDIIDTIPEDSGTYT 124 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p-~~~v~W~~~--g~---~l~--~-----------~~r~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 124 (808)
.+|+|.|.......+ ...|.|+|. +. .+. . .+|.+... ..+..+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 368999999742112 348999993 21 111 0 13444432 234568999999999999999
Q ss_pred EEEEe-cCcceEEEEEEEE
Q psy2145 125 CRAVN-LVGFAEVQATLQC 142 (808)
Q Consensus 125 C~a~n-~~g~~~~~~~l~V 142 (808)
|.+.+ ..|..+..+.|+|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99997 6777777777776
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-06 Score=69.05 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=49.7
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
|.+...+. ..|.+|++|+|.|.. . .+.-.+.|||+|.....-...........+.+.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p~--~vV~~G~~VTL~C~~--~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPS--PVVPSGENVTLQCHS--D-IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCC--CccCCCCeEEEEEec--C-CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 44444432 368899999999987 2 35568999999875331100000011224589999999999999999964
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.5e-06 Score=74.03 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=62.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee----------c--cCcEE-EEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----------I--GHRFR-PIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~----------~--~~r~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
+|.+|++|+|.|.... +...+.|+|+|..+.+. . .+|+. +.......+|.|.+++.+|+|.|.|..
T Consensus 26 ~V~ege~VtLsCs~t~-s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 26 TVSEHVNVKISCNKTS-SFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEcCCCCEEEEEecCC-CCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 8899999999999852 34567899999643332 1 13554 333445568999999999999999998
Q ss_pred Ee-cCc-ceEEEEEEEEecC
Q psy2145 128 VN-LVG-FAEVQATLQCRGS 145 (808)
Q Consensus 128 ~n-~~g-~~~~~~~l~V~~~ 145 (808)
.- ..| ..+..+.|+|...
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 63 346 7788888888754
|
|
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.2e-06 Score=69.26 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=52.6
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCE----Ecc-----C--------CCceEE-EecCceEEEEEccCCCCCcEEEEEE
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNV----PIK-----S--------GSRFTE-TNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~----~l~-----~--------~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
|++|+|.|... .......|.|+|... .+. . ..+... ..+.+.++|.|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~-~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLT-LPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeC-CCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 78999999974 222234799998421 110 0 111111 1223556899999999999999999
Q ss_pred EEe-CceeEEEEEEEEE
Q psy2145 260 AVN-ALGQAVTSGNLLV 275 (808)
Q Consensus 260 a~n-~~g~~~~~~~l~V 275 (808)
+.. +.|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 875 7788777888877
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.7e-06 Score=71.39 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=50.6
Q ss_pred ecCceeecCCCeEEEEEEEeecCC--CCeEEEEeeCCE------Ec---------c-CCCce----EEEe--cCceEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSD--NTMKVEWFHNNV------PI---------K-SGSRF----TETN--NFGFVALD 244 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~~~g~------~l---------~-~~~~~----~~~~--~~~~~~L~ 244 (808)
.|..+.+.+|++|+|.|.+..... ....+.|++... .+ . ...++ .... ..+.++|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 355678889999999999852111 236799987221 11 0 11122 1211 12456899
Q ss_pred EccCCCCCcEEEEEEEEeCce
Q psy2145 245 IMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 245 I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|.+++.+|+|.|.|.+.|..+
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999998544
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-06 Score=67.82 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=50.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeE--EEEEECCEEccCCCcEEE---EEeCCEEEEEEccCCCCCcE-EEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMR--FEWFVNGVELKMGSRFHV---QHDFGYVTLDITKCVPADSG-VYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~--i~W~~~g~~l~~~~~~~~---~~~~~~~~L~I~~v~~~D~G-~Y~C~A~N~~G~ 719 (808)
..+.+|+.++|.|.+. .|.|.+. |.|||+++.|... .+.. ......++|++. +..+|.| .|+|.|.|.++.
T Consensus 11 ~~~~eG~~~tL~C~v~-g~~P~a~L~i~W~rG~~~l~~~-~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVP-GVAPRQNLTVVLLRGNETLSRQ-PFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEc-CcCCCCcEEEEEeeCCEEcccc-eeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 3578999999999995 5688876 7999999999643 2211 111234577775 4455655 799999998764
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.2e-06 Score=70.03 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=50.9
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc-EEE--EeeCCe---EEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR-FRP--IHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r-~~~--~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
..|+.++|.|.+.++..+.+.|+|++||..+..+.. ... ..++.. ..|.|.....+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 479999999999974233579999999999876543 222 122222 24677777677999999999987543
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=66.93 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=52.4
Q ss_pred eEEEEEEEeeCCCCC---eEEEEEEC--CE--Ec--cC-----------CCcEEEEE-eCCEEEEEEccCCCCCcEEEEE
Q psy2145 653 SAHYDCRVVPVGDPT---MRFEWFVN--GV--EL--KM-----------GSRFHVQH-DFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~---p~i~W~~~--g~--~l--~~-----------~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.|+|.|... ...|. .+|+|.+. |. .+ .. .+|..+.. ..+..+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~-~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFI-NPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEee-cCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 689999995 22332 27999983 21 11 11 12333321 2234689999999999999999
Q ss_pred EEEe-CCcceEEEEEEEE
Q psy2145 712 KAIN-RAGEAVSSTSLKV 728 (808)
Q Consensus 712 ~A~N-~~G~~~~s~~l~V 728 (808)
.+.| ..|..+..+.|+|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7899888999987
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-05 Score=68.46 Aligned_cols=88 Identities=26% Similarity=0.396 Sum_probs=59.6
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCE-----Ecc--------------CCCceEEEec--CceEEEEE
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-----PIK--------------SGSRFTETNN--FGFVALDI 245 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~~L~I 245 (808)
...+..+.+.+|++|.|.|... .......+.|++... .+. ...++....+ .+.++|.|
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEeCCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 3346778899999999999994 245667999999321 111 0122232222 34678999
Q ss_pred ccCCCCCcEEEEEEEEeC-ceeEEEEEEEEE
Q psy2145 246 MQCLPEDSGVYTCRAVNA-LGQAVTSGNLLV 275 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~V 275 (808)
.+++.+|+|.|.|.+... .+.......|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999999886 233334455554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=64.78 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=46.9
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-eCcE----EEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFGY----VAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+.|+|.+. .+.|.+.|+|++||+.|.......... +++. ..|.|.....+|...|+|.|.|....
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 68999995 556999999999999987644322222 2222 35777677777889999999998643
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-06 Score=70.73 Aligned_cols=69 Identities=23% Similarity=0.386 Sum_probs=50.6
Q ss_pred cCCceEEEEEEEeeCCC-C-CeEEEEEECCEEccCCCc-EEE--EEeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 649 MEGQSAHYDCRVVPVGD-P-TMRFEWFVNGVELKMGSR-FHV--QHDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~-P-~p~i~W~~~g~~l~~~~~-~~~--~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..|+.+.|.|.+ .|. | .+.|+|++||..+..... ... ..++.+ +.|.|......|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a--~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLA--TGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEE--eeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999 676 6 479999999999976653 222 222232 35666666666999999999998664
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.9e-06 Score=69.02 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCE----Eee-----c--------cCcEEE-EeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGR----PVT-----I--------GHRFRP-IHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~----~l~-----~--------~~r~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
|++|+|.|.... ......|.|+|... .|. . ..|+.. ..+.+.++|.|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~~-~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTL-PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCC-CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 789999999873 22234799998431 211 0 112222 1233567899999999999999999
Q ss_pred EE-ecCcceEEEEEEEE
Q psy2145 127 AV-NLVGFAEVQATLQC 142 (808)
Q Consensus 127 a~-n~~g~~~~~~~l~V 142 (808)
+. ...|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 87 45677788888877
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=67.51 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred CceEEEEEEEeeC----CC-CCeEEEEEEC-----CEE----ccCC----------CcEEEEEe---CCEEEEEEccCCC
Q psy2145 651 GQSAHYDCRVVPV----GD-PTMRFEWFVN-----GVE----LKMG----------SRFHVQHD---FGYVTLDITKCVP 703 (808)
Q Consensus 651 G~~v~l~C~v~~~----g~-P~p~i~W~~~-----g~~----l~~~----------~~~~~~~~---~~~~~L~I~~v~~ 703 (808)
|++|.|.|.+... +. ..+.|.|+|- ... +..+ +|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 7899999997411 11 2579999974 111 1111 24444332 2578999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+|+|.|.|.........+..+.|+|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999888888899999875
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.2e-06 Score=69.53 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=51.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCE-----Ee--------eccCcEEEEee--CCeEEEEEcccCcCCCeeEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGR-----PV--------TIGHRFRPIHD--FGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~-----~l--------~~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~C 125 (808)
.+.+|++|+|.|.... ......+.|||... .| ....|+.+..+ .+.++|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPP-KNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCC-CCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 6789999999999874 24566899998431 11 11346665432 567899999999999999999
Q ss_pred EEEec
Q psy2145 126 RAVNL 130 (808)
Q Consensus 126 ~a~n~ 130 (808)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98764
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.8e-05 Score=65.31 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=53.0
Q ss_pred cEEEEEEEeeCCCC---CceEEEEeCC----EEee--c-----------cCcEEEEe-eCCeEEEEEcccCcCCCeeEEE
Q psy2145 67 HAHFECKLEPVTDS---NLKVEWFKNG----RPVT--I-----------GHRFRPIH-DFGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 67 ~v~l~C~~~~~~~p---~~~v~W~~~g----~~l~--~-----------~~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 125 (808)
.|+|.|.... ..| ...|+|.+.. ..+. . ..|..... +.+..+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~~-~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFIN-PLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeec-CCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 6899999983 222 2269998831 1221 1 12333321 2345689999999999999999
Q ss_pred EEEe-cCcceEEEEEEEEe
Q psy2145 126 RAVN-LVGFAEVQATLQCR 143 (808)
Q Consensus 126 ~a~n-~~g~~~~~~~l~V~ 143 (808)
.+.+ ..|..+..+.|+|.
T Consensus 81 ~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEeCCCCCeEEEEEEEEC
Confidence 9999 68888888888873
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=65.49 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=53.3
Q ss_pred CeEEEEEEEeecCCCCeEEEEeeCC----EEcc-----C--------CCceEEE-ecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 199 QRAHFECRLIPVSDNTMKVEWFHNN----VPIK-----S--------GSRFTET-NNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 199 ~~v~L~C~~~~~~~p~~~v~W~~~g----~~l~-----~--------~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
++|+|.|... ......+|+|.|.. ..+. . ..|.... ...+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~-~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQ-VNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEec-CCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 4689999985 23345689998832 1221 0 1133332 1234558999999999999999998
Q ss_pred Ee-CceeEEEEEEEEE
Q psy2145 261 VN-ALGQAVTSGNLLV 275 (808)
Q Consensus 261 ~n-~~g~~~~~~~l~V 275 (808)
.+ +.|+...++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 66 8899999998887
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=61.71 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=53.1
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.+..|++++|+|...+.+.|.+.|+|+--|..... ....+..+|.+..+...|+|+++|+++=..-.....+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 57789999999998544566679999964432211 001223489999999999999999996443344455555
Q ss_pred EEE
Q psy2145 727 KVK 729 (808)
Q Consensus 727 ~V~ 729 (808)
.|.
T Consensus 84 ~Vl 86 (88)
T cd07694 84 KVL 86 (88)
T ss_pred EEE
Confidence 554
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-05 Score=61.74 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=54.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 140 (808)
.+..|++++|+|...+...|.+.|+|+..+.... .... .+..+|.+..+...|+|.++|.+.-..-..+....|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~-~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILN-QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eecc-CCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 6789999999999975345667999997554322 1111 122379999999999999999997553444455555
Q ss_pred EEe
Q psy2145 141 QCR 143 (808)
Q Consensus 141 ~V~ 143 (808)
.|.
T Consensus 84 ~Vl 86 (88)
T cd07694 84 KVL 86 (88)
T ss_pred EEE
Confidence 553
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=71.85 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=62.9
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEcc----------C--CCceE-EEecCceEEEEEccCCCCCcEEEE
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK----------S--GSRFT-ETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~----------~--~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
..++|.+|++|+|.|... .+...++|.|+|....+. + .+|+. +.......+|.|.+++.+|+|.|+
T Consensus 23 ~~v~V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 356789999999999983 255678899999643221 1 12333 222334458999999999999999
Q ss_pred EEEEe-Cce-eEEEEEEEEEeeC
Q psy2145 258 CRAVN-ALG-QAVTSGNLLVHSK 278 (808)
Q Consensus 258 C~a~n-~~g-~~~~~~~l~V~~~ 278 (808)
|...- +.| ..+..+-|+|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99865 567 7778888998763
|
|
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-05 Score=64.84 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=54.4
Q ss_pred CcEEEEEEEeeCCCCCceEEEEeCC----EEeec-----c--------CcEEEE-eeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 66 GHAHFECKLEPVTDSNLKVEWFKNG----RPVTI-----G--------HRFRPI-HDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p~~~v~W~~~g----~~l~~-----~--------~r~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
++++|.|.... ......|+|.|.. ..+.. + +|.... .+.+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQV-NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecC-CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 46899999974 3455689998832 22221 1 244432 2334568999999999999999998
Q ss_pred E-ecCcceEEEEEEEE
Q psy2145 128 V-NLVGFAEVQATLQC 142 (808)
Q Consensus 128 ~-n~~g~~~~~~~l~V 142 (808)
. ...|..+.++.|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 6 56888899988887
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=68.98 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=54.5
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEe--cCceEEEEEccCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETN--NFGFVALDIMQCLP 250 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~I~~~~~ 250 (808)
...+..+.+.+|++|+|.|.+.. ......+.|||. +.. + ....|+.+.. ..+..+|.|.+++.
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYET-SWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeC-CCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 34566788999999999999842 235678999982 221 1 1134566542 34567899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999985
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=70.62 Aligned_cols=77 Identities=29% Similarity=0.394 Sum_probs=54.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCC----CCCceEEEEeCC------EEee-----------ccCcEEEE--eeCCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVT----DSNLKVEWFKNG------RPVT-----------IGHRFRPI--HDFGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~----~p~~~v~W~~~g------~~l~-----------~~~r~~~~--~~~~~~~ 109 (808)
+..|+.+ .+.+|+.|+|.|...... .....+.|||.. ..+. ...|+... ...+.++
T Consensus 3 vq~P~~v-~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s 81 (119)
T cd05712 3 LWMPKSV-SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS 81 (119)
T ss_pred ccCCCEE-EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence 4567888 899999999999886311 113569999842 1111 01355553 2456689
Q ss_pred EEEcccCcCCCeeEEEEEEec
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
|.|.+++.+|+|.|.|++...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=63.65 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=45.6
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.|.+. .+.|...|+|+|||+.+.......... .++ .++|.|..-..+|...|+|.|.|..-.
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999995 468889999999999987543322222 111 346777655556677899999988543
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.2e-05 Score=89.73 Aligned_cols=279 Identities=12% Similarity=0.031 Sum_probs=167.5
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~ 401 (808)
+......+++...|.|.+ .+.+.+.+.|+.++...... +- +..++.|.+-...+.+.|+|...+..|....
T Consensus 236 ~~~s~t~e~s~~~i~~~l--~~~~G~~~~~~~~~l~e~~~------~~-~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~ 306 (1205)
T KOG0613|consen 236 PSMSVTLEASDRKIQLTL--RAPRGPYSAHILGYLIEQRK------HK-GGNTKTIQNDGPEPELSWTVADKRQGCQDRF 306 (1205)
T ss_pred cccccccchhheeeeEEe--ecCCCchHHHHhcchhhhcc------cC-CCccccccccCCccccceeeecccCCcccce
Confidence 344456778888999988 67777788888776544333 11 2236778888888999999999888777655
Q ss_pred EEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhh
Q psy2145 402 SSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKI 481 (808)
Q Consensus 402 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (808)
.+...+....... .+..... ....+|
T Consensus 307 ~v~~~~~i~~~~~----~p~~~~~------------------aaa~~~-------------------------------- 332 (1205)
T KOG0613|consen 307 KVTEEAPIGKGKP----GPESLQA------------------AAARPP-------------------------------- 332 (1205)
T ss_pred eeeEEeecccccc----Cchhhhh------------------hccCCc--------------------------------
Confidence 4433333221110 0000000 000000
Q ss_pred cccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCC--CeEEEee
Q psy2145 482 RKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSS--RITTKHD 558 (808)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~--~~~~~~~ 558 (808)
..|.+..-..++ ....+..+.+.|.. .+.+.+. +.||+++.....+. .+.+...
T Consensus 333 --------------------~~~v~~~~~~~v-~a~d~~~v~m~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1205)
T KOG0613|consen 333 --------------------EVPVGLVRNLSV-TARDNTLVEMPTAL--SGTQKPDEAQGYHGEEVSSESLGALPCPVGT 389 (1205)
T ss_pred --------------------ccccccccccee-ccccCcceeecccc--cCCcCCchheeeccccccccccccccccccc
Confidence 122222222232 45677889999998 7888887 99999987665543 2333333
Q ss_pred CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeE
Q psy2145 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIF 638 (808)
Q Consensus 559 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~ 638 (808)
.....+.|..+...+.+.|.|.|.|..|.........|.....- ..++.|
T Consensus 390 ~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g------------------------------t~~~~~ 439 (1205)
T KOG0613|consen 390 VTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG------------------------------TQPPKF 439 (1205)
T ss_pred ccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCC------------------------------CCCccc
Confidence 33446889999999999999999999998777655555442110 011222
Q ss_pred EeecCCCccccCCceEEEEEEEeeCCCC--CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 639 TQLLTGTSEIMEGQSAHYDCRVVPVGDP--TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 639 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.....-...+..-+.+.+.|.+ .++| ...++|++++-+.. .++.........+|.+.-....|.|.|.-...-.
T Consensus 440 kk~~~~t~~L~~~~~i~~~~~~--~s~~~~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~ 515 (1205)
T KOG0613|consen 440 KKDVSTTDLLTVKDEITVRTPD--SSTSMPMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTL 515 (1205)
T ss_pred cccccccccccCCcccccccCC--CCccccceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhhhhhhcc
Confidence 2221111123334778889988 5666 44566666665443 2332233344557888888999999996655444
Q ss_pred Ccce
Q psy2145 717 AGEA 720 (808)
Q Consensus 717 ~G~~ 720 (808)
.|..
T Consensus 516 ~~k~ 519 (1205)
T KOG0613|consen 516 QGKP 519 (1205)
T ss_pred CCCC
Confidence 4433
|
|
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=66.45 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=51.8
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCE-----Ec--------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV-----EL--------KMGSRFHVQHD--FGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~-----~l--------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.+.+|++|+|.|.+.. ..+...+.|+|... .| ...+|+.+..+ .+..+|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPP-KNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCC-CCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 4678999999999842 24677899998531 11 11356666432 567899999999999999999
Q ss_pred EEEeCC
Q psy2145 712 KAINRA 717 (808)
Q Consensus 712 ~A~N~~ 717 (808)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987763
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.4e-05 Score=66.91 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=48.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC----EE---ee---c------------cCcEEEEeeCCeEEEEEcccCcC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG----RP---VT---I------------GHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g----~~---l~---~------------~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
.+.+|++|+|.|.+.. .....+.|||.. .. |. . ..|+....+.....|.|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~--~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLN--SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecC--CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 4789999999999863 334579999832 11 11 0 12444444556778999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998763
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=67.14 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=51.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--C-CEE--ee--------------ccCcEEEEeeC--CeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--N-GRP--VT--------------IGHRFRPIHDF--GYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~-g~~--l~--------------~~~r~~~~~~~--~~~~L~I~ 113 (808)
.|..+ .+.+|++|+|.|...........+.||| . +.+ |. ...||....+. ..+.|.|.
T Consensus 3 ~~~~~-~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 3 ESGPG-LVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred cCCCe-EEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 56677 8999999999999863111245699998 2 222 10 02456655443 34689999
Q ss_pred ccCcCCCeeEEEEEEe
Q psy2145 114 DTIPEDSGTYTCRAVN 129 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n 129 (808)
++..+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998864
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=62.42 Aligned_cols=64 Identities=19% Similarity=0.458 Sum_probs=46.3
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-eCc----EEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFG----YVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
++|+|.+. .+.|.+.|+|+|||+.+.......... .++ ...|.+..-..+|...|+|+|.|..-
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 68999995 568889999999999986543222221 222 23677876667788899999998743
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0012 Score=68.66 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=56.8
Q ss_pred CeEEEEEcccCcCCCeeEEEEEEecC-cce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCC
Q psy2145 106 GYVALDIIDTIPEDSGTYTCRAVNLV-GFA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182 (808)
Q Consensus 106 ~~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (808)
+.+.|.|.+++..++|.|.=++.+.. +.. +..++|.+. .
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------------------------------------r 328 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--------------------------------------K 328 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe--------------------------------------c
Confidence 44579999999999999997765432 233 344444443 3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS 228 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~ 228 (808)
+|.+.+. ...+.+|+...-.|.+.. .......+.||+||.++..
T Consensus 329 ~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 329 RPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred CCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 4433333 344779999999999862 2233568999999999874
|
|
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.8e-05 Score=67.03 Aligned_cols=68 Identities=24% Similarity=0.442 Sum_probs=48.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EE---e-e-------------ccCcEEEE--eeCCeEEEEEcccC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RP---V-T-------------IGHRFRPI--HDFGYVALDIIDTI 116 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~---l-~-------------~~~r~~~~--~~~~~~~L~I~~~~ 116 (808)
.|.+|++|+|.|.+... .....+.|||. | +. | . ...|+... .+...+.|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~-~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGI-SENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecC-CCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 68899999999998731 23458999983 2 11 1 0 02355442 33456789999999
Q ss_pred cCCCeeEEEEEEe
Q psy2145 117 PEDSGTYTCRAVN 129 (808)
Q Consensus 117 ~~D~G~Y~C~a~n 129 (808)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999853
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.7e-05 Score=65.76 Aligned_cols=67 Identities=19% Similarity=0.428 Sum_probs=48.8
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEEC--C--EE---cc---C------------CCcEEEEEeCCEEEEEEccCCCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVN--G--VE---LK---M------------GSRFHVQHDFGYVTLDITKCVPA 704 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~--g--~~---l~---~------------~~~~~~~~~~~~~~L~I~~v~~~ 704 (808)
.+.+|++|+|.|.+ .+.-...+.|||. | .. |. . ..|+.+..+.....|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~--~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEV--LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEe--cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 36789999999998 4444567999983 3 11 10 0 23455555567789999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 705 DSGVYMCKAIN 715 (808)
Q Consensus 705 D~G~Y~C~A~N 715 (808)
|+|+|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998754
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.011 Score=60.96 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=75.6
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
++.+..|+.+.+.-.. ..-...+.|--.-.+=..-..|.+...+..-.|.|..++...+|.|+=+.-+..+......
T Consensus 136 n~~a~~~g~l~y~sa~---~~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~ 212 (466)
T PHA03270 136 NVTAPPGGELVYDSAP---NRTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGT 212 (466)
T ss_pred ecccCCCceEEeccCc---cccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeee
Confidence 3445566666554432 1123467775311110001133343333334699999999999999999877655444334
Q ss_pred EEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc--cEE
Q psy2145 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK--LKV 349 (808)
Q Consensus 272 ~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v 349 (808)
.++|.. ..+|.+... ...+.+|+...-.|.+. .-+|. ..+
T Consensus 213 ~VtV~~-----------------------------------yr~Psvsv~--~~PvL~Ge~Y~AtC~va-~YYPp~Sv~l 254 (466)
T PHA03270 213 WTRVRM-----------------------------------FRRPSLSIR--PHAVLEGEPFGATCVAA-NYYPGDRAAF 254 (466)
T ss_pred EEEEEE-----------------------------------ecCCccccc--CCccccCCCceEEEEee-eecCCCceEE
Confidence 444432 124443322 23467899999999984 33443 789
Q ss_pred EEEECCEeccC
Q psy2145 350 TWLRNGVPIQA 360 (808)
Q Consensus 350 ~W~~~g~~l~~ 360 (808)
.||+||.++..
T Consensus 255 rWf~ng~~V~~ 265 (466)
T PHA03270 255 RWFEGGDEVFA 265 (466)
T ss_pred EEEeCCccccC
Confidence 99999998864
|
|
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=62.68 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=47.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCCe----EEEEEcccCcCCCe-eEEEEEEecCcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGY----VALDIIDTIPEDSG-TYTCRAVNLVGF 133 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~~----~~L~I~~~~~~D~G-~Y~C~a~n~~g~ 133 (808)
.+..|+.++|.|.+.++-.+...|+|+|||+.+..+..-. ...+++. ..|.+.. ...|.| .|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCC
Confidence 5568899999999998533457999999999986432211 1122212 2455554 344544 599999986433
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=67.93 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=54.9
Q ss_pred EEEEEccCCCCCcEEEEEEEEe-CceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVN-ALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT 319 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~ 319 (808)
..|.|.+++..++|.|+=++.+ ..|.......++|.. ..+|.+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~-----------------------------------yr~PsVs 333 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS-----------------------------------YKRPNIT 333 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE-----------------------------------ecCCCcc
Confidence 4799999999999999877653 223333334444432 1244332
Q ss_pred cCCCceEeecCCeEEEEEEEeecCCCc--cEEEEEECCEeccC
Q psy2145 320 QPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNGVPIQA 360 (808)
Q Consensus 320 ~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~ 360 (808)
. ....+.+|+...-.|.+. .-+|. ..+.||+||.++..
T Consensus 334 V--~p~PVL~Ge~YkAtC~vA-~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 334 V--IGDPVLLGNPYAAYCKVN-KYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred c--cCCccccCCCceEEEEee-eecCCCceEEEEEeCCcccCc
Confidence 2 233467899999999984 33443 78999999999875
|
|
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=61.42 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC---ceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS---RFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
+|.+.+...... |+.++|.|.+.+.-.+...++|+++|..+..+. ......++.+..-....+...+.+.|+|+
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 455554444332 788999999975334456999999997443322 22222233332223334445588999999
Q ss_pred EEeCc
Q psy2145 260 AVNAL 264 (808)
Q Consensus 260 a~n~~ 264 (808)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd07698 79 VEHSG 83 (93)
T ss_pred EEeCC
Confidence 98853
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-05 Score=65.86 Aligned_cols=75 Identities=24% Similarity=0.345 Sum_probs=51.6
Q ss_pred ecCceeecCCCeEEEEEEEeecC----CCCeEEEEeeCCE-----E-cc-----------CCCceEEE--ecCceEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVS----DNTMKVEWFHNNV-----P-IK-----------SGSRFTET--NNFGFVALDI 245 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~----~p~~~v~W~~~g~-----~-l~-----------~~~~~~~~--~~~~~~~L~I 245 (808)
.|+.+.+.+|++|+|.|...... .....+.|||... . +. -..|+... ...+.++|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 45567899999999999874111 1136799998421 1 10 01244442 2456679999
Q ss_pred ccCCCCCcEEEEEEEEeC
Q psy2145 246 MQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~ 263 (808)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.1e-05 Score=58.89 Aligned_cols=64 Identities=31% Similarity=0.479 Sum_probs=48.4
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcE----EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF----HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.|.+ .+.+.+.+.|++++......... ..........|.|.++...|.|.|.|.+.+..+.
T Consensus 1 ~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLA--SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEe--cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 4789999 56889999999998876543321 1111234568999999999999999999988743
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=60.44 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=46.6
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccC---cEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH---RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~---r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
+.+|+.++|.|.+.++-.+...++|+|||..+..+. ......|+.........+...+...|+|++.+...
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 347899999999998655666999999999987541 11111222222222233445567799999988644
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0026 Score=65.43 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=58.1
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
.|.|..++...+|.|+=+.-+..+.......++|.. ..+|.+.+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~------------------------------------yr~Psvsv 226 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM------------------------------------FRRPSLSI 226 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE------------------------------------ecCCcccc
Confidence 599999999999999999887666444334444431 33454443
Q ss_pred ecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS 228 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~ 228 (808)
.+ ..+.+|+...-.|.+.. .......+.||+||.++..
T Consensus 227 ~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 227 RP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred cC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 33 34679999999999862 2233568999999998853
|
|
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.4e-05 Score=65.22 Aligned_cols=67 Identities=21% Similarity=0.482 Sum_probs=47.7
Q ss_pred cccCCceEEEEEEEeeCCC-CCeEEEEEEC--C---EEc------c-----------CCCcEEEE--EeCCEEEEEEccC
Q psy2145 647 EIMEGQSAHYDCRVVPVGD-PTMRFEWFVN--G---VEL------K-----------MGSRFHVQ--HDFGYVTLDITKC 701 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~-P~p~i~W~~~--g---~~l------~-----------~~~~~~~~--~~~~~~~L~I~~v 701 (808)
.+.+|++|+|.|.+ .+. ....+.||+- | +.+ . ...++.+. .+.....|+|.++
T Consensus 2 ~v~~G~~vtL~C~~--~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEA--KGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEE--ecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 46789999999998 443 3568999973 3 110 0 02456543 2345678999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 702 VPADSGVYMCKAIN 715 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N 715 (808)
..+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.9e-06 Score=89.21 Aligned_cols=185 Identities=26% Similarity=0.366 Sum_probs=117.4
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-c------CceEEEEEccCCCCCcE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-N------FGFVALDIMQCLPEDSG 254 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~------~~~~~L~I~~~~~~D~G 254 (808)
.-|.|+..+.+..+..|.++.|.|.+ +|.++|...-++.-+.......+.. + ....+..|.....++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a----~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~ 98 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKA----NPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSG 98 (909)
T ss_pred CcceeeecCCccceecCCCccceecC----CcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhccc
Confidence 45788999999999999999999987 3444443322222222221111111 0 01224556665555544
Q ss_pred ---EE--EEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeec
Q psy2145 255 ---VY--TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAE 329 (808)
Q Consensus 255 ---~Y--~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 329 (808)
.| +|.|....|...+. ....+++.++ ..|...+....|..
T Consensus 99 ~~~d~~cQc~a~~~~g~~~s~------------------~a~vr~ay~r-----------------k~f~~~p~~q~V~~ 143 (909)
T KOG1480|consen 99 GPEDYWCQCVAWSDDGTVKSR------------------KATVRIAYLR-----------------KHFEQSPVGQEVQE 143 (909)
T ss_pred CccceeeeeeeecCCCcchhh------------------hHHHHHHHHH-----------------HhhccChhhheecc
Confidence 45 45566555521111 0112233322 13444555667888
Q ss_pred CCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEE
Q psy2145 330 NQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVE 408 (808)
Q Consensus 330 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~ 408 (808)
+..+.+.|+. +.+.|...+.|++++..+..........+. .|++..+...|+|+|+|+|.|..+.... .+.+.|.
T Consensus 144 ~s~~~l~cr~-pe~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 144 ETTLQLPCRP-PEGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred cccccccccC-cccchhhhhhccccCCCCCccccchhhhcC---CccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 9999999986 589999999999999998886655555554 4899999999999999999998887654 3555554
Q ss_pred e
Q psy2145 409 S 409 (808)
Q Consensus 409 ~ 409 (808)
.
T Consensus 220 v 220 (909)
T KOG1480|consen 220 V 220 (909)
T ss_pred E
Confidence 3
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0025 Score=66.26 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=71.9
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeecc
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ 320 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~ 320 (808)
..|.|..++..++|.|+=+..+..|.......++|.. ..+|.+..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-----------------------------------yr~Psvsv 242 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-----------------------------------YNAPLVDL 242 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-----------------------------------ecCCcccc
Confidence 3699999999999999877766656555555666642 12444332
Q ss_pred CCCceEeecCCeEEEEEEEeecCCCc--cEEEEEECCEeccCCC----cEEEEeeCc---EEEEEEccCCC-CCCeEEEE
Q psy2145 321 PMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNGVPIQASN----RVSTMHDFG---YVALNFKYTYP-EDSGTYTC 390 (808)
Q Consensus 321 ~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~----~~~~~~~~~---~~~L~I~~v~~-~d~G~Y~C 390 (808)
. ...+.+|+...-.|.+. .-+|. ..+.||.||.++.... ......++. .++|.+..... +..-..+|
T Consensus 243 ~--~~PvL~Ge~y~A~C~aa-~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC 319 (486)
T PHA03273 243 S--VHPSLKGENYRAVCVVA-SYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRC 319 (486)
T ss_pred c--CCccccCCCceEEEEee-eecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceE
Confidence 2 23467899999999984 33443 7899999999988322 222222333 23444444332 22336778
Q ss_pred EEEc
Q psy2145 391 RAVN 394 (808)
Q Consensus 391 ~a~n 394 (808)
.+.=
T Consensus 320 ~v~W 323 (486)
T PHA03273 320 SIEW 323 (486)
T ss_pred EEEE
Confidence 7653
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0037 Score=65.01 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=73.9
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
+.|.|..++..++|.|+=+..+..|.......++|.. ..+|.+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~------------------------------------yr~Psvs 241 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST------------------------------------YNAPLVD 241 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE------------------------------------ecCCccc
Confidence 5699999999999999988766656555555665532 3345544
Q ss_pred eecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC-CC---ceEEEecCce---EEEEEccCCC-CCcEEEEE
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS-GS---RFTETNNFGF---VALDIMQCLP-EDSGVYTC 258 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~-~~---~~~~~~~~~~---~~L~I~~~~~-~D~G~Y~C 258 (808)
+.+ ..+.+|+...-.|.+.. .......+.||+||.++.. .. ......+++. ++|.+..... +..=..+|
T Consensus 242 v~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC 319 (486)
T PHA03273 242 LSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRC 319 (486)
T ss_pred ccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceE
Confidence 333 34779999999999862 2233568999999999872 21 1222223331 2344444322 22237789
Q ss_pred EEEe
Q psy2145 259 RAVN 262 (808)
Q Consensus 259 ~a~n 262 (808)
.+.=
T Consensus 320 ~v~W 323 (486)
T PHA03273 320 SIEW 323 (486)
T ss_pred EEEE
Confidence 9864
|
|
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0003 Score=60.46 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=45.3
Q ss_pred cccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEE-EEeC-C---EEEEEEccCCCCCcE-EEEEEEEeCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHV-QHDF-G---YVTLDITKCVPADSG-VYMCKAINRA 717 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~-~~~~-~---~~~L~I~~v~~~D~G-~Y~C~A~N~~ 717 (808)
.+..|+.++|.|.+. ...| ...|+|+|||+.+..+..-.. ..++ . .+.|.+.. ...|.| .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~-gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAH-GFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEe-eEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 456788999999995 3356 479999999999875322111 1122 1 34566654 445555 4999998874
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00027 Score=58.84 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=44.4
Q ss_pred cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EE-EecCc-eEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TE-TNNFG-FVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~-~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
..|+.++|.|.+.+.-.+...+.|++||+.+..+... .. .+.+| +.......+...+...|+|++.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 4689999999998655556799999999998654111 11 12222 2222222334456669999998854
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=59.56 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=42.6
Q ss_pred cEEEEEEEeeCCCCCceEEEEeCCE-----Eee-------------ccCcEEEEee--CCeEEEEEcccCcCCCeeEEEE
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKNGR-----PVT-------------IGHRFRPIHD--FGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~g~-----~l~-------------~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
+|+|.|.+.....+...+.|++... .|. ...|+....+ .+.++|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999985322224899998431 111 1245655544 6778999999999999999996
Q ss_pred E
Q psy2145 127 A 127 (808)
Q Consensus 127 a 127 (808)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
|
|
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=55.72 Aligned_cols=62 Identities=31% Similarity=0.602 Sum_probs=46.4
Q ss_pred eEEEEEEeeCCCCCcEEEEEECCEecCCCCCe----EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 522 AHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI----TTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 522 v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
+.|.|.+ .+.+...+.|++++......... ..........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~--~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA--SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe--cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789999 56788899999998776543321 11112334579999999999999999999876
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00041 Score=57.35 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=47.0
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE---EEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF---RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
+..|...+|.|.+.++-.+...|+|+|||.++. +... ....|+.+....-..+...+...|+|++.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 345778899999998656678999999999987 4321 11223333223333445678888999998753
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=57.08 Aligned_cols=68 Identities=16% Similarity=0.360 Sum_probs=45.7
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE---EEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT---ETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+..|+..+|.|.+.+.-.+...++|+|||+++. +.... ...++.+.......+.+.+...|+|++.+.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 446788899999987666688999999999986 43211 122222222223344567777999999884
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00039 Score=58.02 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=43.1
Q ss_pred CceEEEEEEEeeCCC-CC-eEEEEEECCEEccCCC---cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 651 GQSAHYDCRVVPVGD-PT-MRFEWFVNGVELKMGS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 651 G~~v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
|+.++|.|.+ .|. |. ..|+|++||+.+..+. .+....++.+.......+...|.+.|+|.+.+..-
T Consensus 14 ~~~~~L~C~a--~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHA--TGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEE--EEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 7789999999 674 54 4999999997544332 22222233333344444555688999999987743
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=61.47 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=47.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE-E-EEe-eCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF-R-PIH-DFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~-~-~~~-~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
...+++.++|.|.+.++-.+...|.|+|||..+..+... . ... ++.+ ..|.+......+...|+|++.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 566788999999999854447899999999998643111 1 112 2222 245555554445678999998764
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=56.36 Aligned_cols=65 Identities=28% Similarity=0.488 Sum_probs=43.3
Q ss_pred cEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE-EEE--eeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF-RPI--HDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~-~~~--~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++|.|.+.++-.+...|+|+|||+++..+... ... .++.. +.|.|.....++...|+|+|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 378999999853444799999999975543221 111 12222 257776666677789999998753
|
|
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00035 Score=57.94 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=43.1
Q ss_pred cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE--EEecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT--ETNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~--~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
..|+.++|.|.+.+.-.+...++|++||.++..+.... ..+.++. ..|.+. +.+...|+|++.+.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 44677899999986555578999999999986542211 1122232 234443 45566999999875
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00041 Score=57.72 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=47.1
Q ss_pred CeEEEEEEEeecCCCCeEEEEeeCCE----Ecc-----------C--CCceEEEe-cCceEEEEEccCCCCCcEEEEEEE
Q psy2145 199 QRAHFECRLIPVSDNTMKVEWFHNNV----PIK-----------S--GSRFTETN-NFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 199 ~~v~L~C~~~~~~~p~~~v~W~~~g~----~l~-----------~--~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
+.++|.|... ......+|+|.|... .+. . ..|..... .....+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~-~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYP-KTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcC-CCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 4689999984 234567899988421 111 0 12222221 113458999999999999999999
Q ss_pred Ee-CceeEEEEEE
Q psy2145 261 VN-ALGQAVTSGN 272 (808)
Q Consensus 261 ~n-~~g~~~~~~~ 272 (808)
.. +.|.....+.
T Consensus 80 ~t~P~g~~~~~i~ 92 (96)
T cd05889 80 VTYPQGSWEKVIE 92 (96)
T ss_pred EeCCCCCeEEEEE
Confidence 77 5666555443
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00048 Score=57.30 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=48.2
Q ss_pred CcEEEEEEEeeCCCCCceEEEEeCCE----Eeec-----c--------CcEEEEe-eCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 66 GHAHFECKLEPVTDSNLKVEWFKNGR----PVTI-----G--------HRFRPIH-DFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p~~~v~W~~~g~----~l~~-----~--------~r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
+.++|.|.... ......|+|.|... .|.. + +|+.... .....+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPK-TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCC-CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 46899999874 34566899998421 2221 1 2333321 123468999999999999999999
Q ss_pred Eec-CcceEEEEEE
Q psy2145 128 VNL-VGFAEVQATL 140 (808)
Q Consensus 128 ~n~-~g~~~~~~~l 140 (808)
..- .|..+..+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 754 5555544443
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00043 Score=57.78 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=45.1
Q ss_pred ccCCCCcEEEEEEEeeC-CCCCceEEEEeCCEEe-eccC-cEEEEeeCCeE---EEEEcccCcCCCeeEEEEEEecCc
Q psy2145 61 NLRERGHAHFECKLEPV-TDSNLKVEWFKNGRPV-TIGH-RFRPIHDFGYV---ALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~-~~p~~~v~W~~~g~~l-~~~~-r~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
.+..|+.++|.|.+.++ -.+...|+|+|||... .... ......|+.+. .|.+..-...+.-.|+|.+.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 67789999999999987 5667799999987433 2111 11112222222 344444333345579999988643
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=58.29 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=46.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccC---cEEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH---RFRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~---r~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
....++.++|.|.+.++-.+...|+|+|||..+..+. ......++.+ ..|.|......+...|+|++.+....
T Consensus 10 ~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 10 DTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred HcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3335677999999998544568999999999874321 1111122221 24555544444667999999886443
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=60.24 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=52.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE--EEEeeC-Ce----EEEEEcccCcCC-CeeEEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF--RPIHDF-GY----VALDIIDTIPED-SGTYTCR 126 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~--~~~~~~-~~----~~L~I~~~~~~D-~G~Y~C~ 126 (808)
.|... .+.+++.++|.|.+.++-.+...|.|+|||..+..+... ....++ +. ..|.|......| ...|+|.
T Consensus 9 ~ps~~-e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~ 87 (115)
T cd05769 9 PPSEA-EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCI 87 (115)
T ss_pred CcChH-HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEE
Confidence 44444 566788899999999854444799999999998754321 111221 22 246666544434 5689999
Q ss_pred EEecCcceEEEE
Q psy2145 127 AVNLVGFAEVQA 138 (808)
Q Consensus 127 a~n~~g~~~~~~ 138 (808)
+.+.........
T Consensus 88 V~H~g~~~~~~~ 99 (115)
T cd05769 88 VQFYGGTDTDKW 99 (115)
T ss_pred EEEeCCccceee
Confidence 998755444433
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=2e-05 Score=85.74 Aligned_cols=186 Identities=25% Similarity=0.379 Sum_probs=114.1
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC---c----EEEEEECCCCCCCC
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF---G----YVAMDLSHVRAEDE 574 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~---~----~~~L~I~~v~~~D~ 574 (808)
.-|.|+..+.+. .+..|..+.|.|.+ +|.+++...-+++-+...........+ | .....|.....++.
T Consensus 23 ~l~~~~~~p~~~-yii~~~p~~l~c~a----~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~ 97 (909)
T KOG1480|consen 23 DLPHFTTEPKSA-YIIKNKPLRLQCKA----NPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETS 97 (909)
T ss_pred CcceeeecCCcc-ceecCCCccceecC----CcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcc
Confidence 457788877776 47789999999986 566666555555444433322222111 1 11344444333332
Q ss_pred E---EE--EEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 575 G---IY--ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 575 G---~Y--~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
| .| .|.|....|...+ .+. .-+|..+ +=.|.+.+.. ..|.
T Consensus 98 ~~~~d~~cQc~a~~~~g~~~s--~~a----------------~vr~ay~----------------rk~f~~~p~~-q~V~ 142 (909)
T KOG1480|consen 98 GGPEDYWCQCVAWSDDGTVKS--RKA----------------TVRIAYL----------------RKHFEQSPVG-QEVQ 142 (909)
T ss_pred cCccceeeeeeeecCCCcchh--hhH----------------HHHHHHH----------------HHhhccChhh-heec
Confidence 2 34 4566666661111 000 0011111 1112222222 3577
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKV 728 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V 728 (808)
++..+.|.|... .|+|...++|+|||..+.++..+....+. .|+|..+...|+|.|+|+|.|-++.-.. ++.+.|
T Consensus 143 ~~s~~~l~cr~p-e~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 143 EETTLQLPCRPP-EGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred ccccccccccCc-ccchhhhhhccccCCCCCccccchhhhcC---CccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 889999999874 89999999999999999887666666654 5999999999999999999999985543 445554
Q ss_pred EeC
Q psy2145 729 KSK 731 (808)
Q Consensus 729 ~~~ 731 (808)
...
T Consensus 219 yv~ 221 (909)
T KOG1480|consen 219 YVN 221 (909)
T ss_pred EEc
Confidence 433
|
|
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00023 Score=60.25 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=49.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE--EEee---CCe----EEEEEcccCcCCCeeEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR--PIHD---FGY----VALDIIDTIPEDSGTYT 124 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~--~~~~---~~~----~~L~I~~~~~~D~G~Y~ 124 (808)
..|... .+..|+.++|.|.+.++-.+...|+|+|||.++..+.... ...+ ++. ..|.|..-...+...|+
T Consensus 6 ~~p~~~-~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt 84 (102)
T cd05768 6 LPPPSE-ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT 84 (102)
T ss_pred eCcChH-HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence 344443 5667899999999998545566899999999876432111 1111 122 24555433334556899
Q ss_pred EEEEecC
Q psy2145 125 CRAVNLV 131 (808)
Q Consensus 125 C~a~n~~ 131 (808)
|++.+..
T Consensus 85 C~V~H~~ 91 (102)
T cd05768 85 CVVGHEA 91 (102)
T ss_pred EEeEeCC
Confidence 9998764
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00028 Score=61.77 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=49.8
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--C-EE--c---c-----------CCCceEEEecC--ceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--N-VP--I---K-----------SGSRFTETNNF--GFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g-~~--l---~-----------~~~~~~~~~~~--~~~~L~I~~ 247 (808)
.|....+.+|++|+|.|...........+.|||. | .+ | . ...++....+. ....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 4556788999999999987321112456999982 2 22 1 0 01345444332 345799999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999999864
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0005 Score=56.93 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=46.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
|+.+.|.|.+. .|.|.|.|+|+.+|..+........ ..+.+ .+.|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSS-GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEE-EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeC-CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999886 7999999999999988821111111 11111 2457776544456778999999986543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00028 Score=57.22 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=42.4
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCE-----Ec-------------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEEEEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGV-----EL-------------KMGSRFHVQHD--FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~-----~l-------------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.|.|.+...+.+...+.|++... .| ...+|+.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999953333335899998431 01 11356666555 6678999999999999999996
|
|
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00052 Score=57.04 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=47.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc-e-EEEecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-F-TETNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~-~-~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
|.......++.++|.|.+.+.-.+...|+|++||..+..+.. . .....++. ..|.|..-...+...|+|++.+.
T Consensus 6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 333333356779999999865555689999999998743211 1 11122222 24556654455667999999986
Q ss_pred cee
Q psy2145 264 LGQ 266 (808)
Q Consensus 264 ~g~ 266 (808)
...
T Consensus 86 ~~~ 88 (94)
T cd05847 86 GTT 88 (94)
T ss_pred Cee
Confidence 543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00049 Score=56.04 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=47.0
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEE--eeCCeE-EEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI--HDFGYV-ALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~--~~~~~~-~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
..++.++|.|.+.++......|.|+++|..+..+...... ..++.+ ......+...+...|+|++.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCCC
Confidence 3499999999999865556799999999998765433221 223332 2222233356667899999986543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00056 Score=56.77 Aligned_cols=66 Identities=27% Similarity=0.523 Sum_probs=44.0
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc---EEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r---~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
..|+.++|.|.+.++-.+...++|+|||..+..+.. .....|+.+ ..|.|. .++...|+|.+.+..
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 346778999999986455689999999999865421 122223322 235443 456679999998763
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00049 Score=58.17 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=49.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcE-E-EEE-eCCE---EEEEEccCCCCCcEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRF-H-VQH-DFGY---VTLDITKCVPADSGV 708 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~-~-~~~-~~~~---~~L~I~~v~~~D~G~ 708 (808)
|.....+.......+++.++|.|.+... .| ...|.|++||+.+..+... . ... ++.+ +.|.+..-...+...
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gf-yP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDF-YPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeE-ECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 3333344444456678889999999532 45 7799999999998643111 1 111 2222 345554444345678
Q ss_pred EEEEEEeCC
Q psy2145 709 YMCKAINRA 717 (808)
Q Consensus 709 Y~C~A~N~~ 717 (808)
|+|.+....
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999987664
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.033 Score=57.16 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=52.7
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEE--EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVT--SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF 318 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~ 318 (808)
..|.|.++...|+|.|+-...+....... ...+.+.. .||.+
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~------------------------------------RPPsV 250 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ------------------------------------RPASV 250 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe------------------------------------cCCCc
Confidence 47999999999999776555543333222 22333322 34444
Q ss_pred ccCCCceEeecCCeEEEEEEEeecCCCc--cEEEEEECCEeccCC
Q psy2145 319 TQPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNGVPIQAS 361 (808)
Q Consensus 319 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~ 361 (808)
...+ ..+.+|++..-.|.+. .-+|. ..+.||.||.++...
T Consensus 251 sV~a--~PVL~Ge~YkAtC~vA-nYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 251 DVLA--PPVLSGENYKASCIVR-HFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred cccC--CccccCCCceEEEEee-eecCCCceEEEEEeCCccccCc
Confidence 3322 2357899999999984 33443 789999999988654
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00063 Score=56.34 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=44.0
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC-ceEEEecCce----EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS-RFTETNNFGF----VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|+.+.|.|.+.+ +.|.+.|.|+.++..+.... ......+.+. ..|.+..-...+...++|+|.|..-
T Consensus 14 ~~~~~~~C~s~~-~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSG-GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEE-EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCC-eECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 789999999874 99999999999998872111 1112222221 2466654444466689999998653
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00063 Score=54.09 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=42.1
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE-E-EecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-E-TNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~-~-~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
.++|.|.+.+.-.+.+.+.|+|||+++..+.... . ...+|. +.|.|......+...|+|+|.+.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 3789999975333457999999999854432111 1 122222 24666666667778999999875
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.017 Score=59.07 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=55.4
Q ss_pred CeEEEEEcccCcCCCeeEEEEEEecCcce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCC
Q psy2145 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183 (808)
Q Consensus 106 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (808)
....|.|.++...|+|.|+....+..... +....+.+. ..|
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~-------------------------------------~RP 247 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC-------------------------------------QRP 247 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE-------------------------------------ecC
Confidence 33579999999999997755554433322 233333333 445
Q ss_pred CeEEeecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEccC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPIKS 228 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l~~ 228 (808)
|.+.+.+ ..+.+|+...-.|.+.. .......+.||+||.++..
T Consensus 248 PsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 248 ASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred CCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 5554444 33679999999999962 2223568999999998754
|
|
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00042 Score=57.63 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=44.8
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCCeE----EEEEcccCcCCCeeEEEEEEec
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGYV----ALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
|... ++..+..++|.|.+.++-.+...|+|+|||..+..+.... ...+++.+ .|.|..-. ....|+|.+.+.
T Consensus 8 ps~~-e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 8 PSKK-EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred CCHH-HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 4433 5556788999999998655677999999999876542211 11122221 34443221 234599999874
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00034 Score=52.12 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=35.8
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.|.+|+|+|.. .+.. |.|++|+..+...+. .+.+.+-. +++|.|+|.|.|.
T Consensus 6 sGTtVtlTCP~--~~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPL--SGDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCC--CCCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 59999999975 2222 999999976664322 23333444 8999999998654
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00054 Score=58.03 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=46.0
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEec---Cce----EEEEEccCCCCCcEEEEEEEEe
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNN---FGF----VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~---~~~----~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
...+..|+.++|.|.+.+.-.+...+.|+|||+++...... ....+ +|. ..|.|..-...+...|+|++.+
T Consensus 10 ~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 10 SEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred hHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEe
Confidence 34455688999999997655556789999999987643211 11111 232 2455544434456689999987
Q ss_pred C
Q psy2145 263 A 263 (808)
Q Consensus 263 ~ 263 (808)
.
T Consensus 90 ~ 90 (102)
T cd05768 90 E 90 (102)
T ss_pred C
Confidence 5
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00082 Score=57.95 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=52.8
Q ss_pred CeEEee-cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc---eEEEecCce----EEEEEccCCCCC-cE
Q psy2145 184 PIFTTS-LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR---FTETNNFGF----VALDIMQCLPED-SG 254 (808)
Q Consensus 184 P~~~~~-~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~----~~L~I~~~~~~D-~G 254 (808)
|.+.+- |....+.+++.++|.|.+.+.-.+...|.|+|||..+..+.. .....+++. ..|.|......| ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 444333 334445567889999999864444579999999999875432 112222132 246666554444 55
Q ss_pred EEEEEEEeCceeEE
Q psy2145 255 VYTCRAVNALGQAV 268 (808)
Q Consensus 255 ~Y~C~a~n~~g~~~ 268 (808)
.|+|.+.+......
T Consensus 83 ~ytC~V~H~g~~~~ 96 (115)
T cd05769 83 TFTCIVQFYGGTDT 96 (115)
T ss_pred eEEEEEEEeCCccc
Confidence 99999998644433
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00096 Score=55.69 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=45.7
Q ss_pred ecCceeecCCCeEEEEEEEeec-CCCCeEEEEeeCCEEc-cCCCceEEEecCc-e---EEEEEccCCCCCcEEEEEEEEe
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPV-SDNTMKVEWFHNNVPI-KSGSRFTETNNFG-F---VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~~~g~~l-~~~~~~~~~~~~~-~---~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+|....+..|+.++|.|.+.+. -.+...|+|+|||... ...........+| + ..|.+..-...+.-.|+|.+.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444456679999999999765 4556799999987433 2111111112222 2 1355554333345589999988
Q ss_pred Cc
Q psy2145 263 AL 264 (808)
Q Consensus 263 ~~ 264 (808)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 54
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.27 Score=50.40 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=55.8
Q ss_pred ceEeecCCeEEEEEEEeecCCCc-cEEEEEECCEeccC-----------------CCcEEEEe------eCcEEEEEEcc
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQA-----------------SNRVSTMH------DFGYVALNFKY 379 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~-----------------~~~~~~~~------~~~~~~L~I~~ 379 (808)
...+..|..+.|+|.++--|+.. ..+.|+--|-++.+ .+.+.+.. +-..++|+|.+
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34556699999999985334443 57899887765542 12222222 12345899999
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 380 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
+..+.+|-|+|+|....-......-|.|.
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~ 381 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVA 381 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEec
Confidence 99999999999998754344444445553
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=55.82 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=51.7
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCC-ceEEEEe--CCEEee--------------ccCcEEEE--eeCCeEEEEEccc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFK--NGRPVT--------------IGHRFRPI--HDFGYVALDIIDT 115 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~-~~v~W~~--~g~~l~--------------~~~r~~~~--~~~~~~~L~I~~~ 115 (808)
++... .+..|+.++|.|.+.+..... ..+.|+| +| .+. ...|+... .+...++|.|.++
T Consensus 4 ~~~~~-lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 4 QQSPV-LASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred ecCCe-EEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence 34444 788999999999998655555 6899998 33 211 12344333 3456789999999
Q ss_pred CcCCCeeEEEEEE
Q psy2145 116 IPEDSGTYTCRAV 128 (808)
Q Consensus 116 ~~~D~G~Y~C~a~ 128 (808)
+.+|++.|.|..+
T Consensus 82 ~a~DTa~Y~Ca~e 94 (115)
T cd05721 82 RANQTDIYFCKIE 94 (115)
T ss_pred CHHHCeEEEEEee
Confidence 9999999999863
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00046 Score=51.43 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=36.8
Q ss_pred cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
..|.+|+|+|.. .+.. +.|++|+..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~--~~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPL--SGDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCC--CCCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 469999999975 3222 999999977665332 23444444 8999999999654
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=53.98 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=45.7
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE-E-ecCceEE-EEEccCCCCCcEEEEEEEEeCc
Q psy2145 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE-T-NNFGFVA-LDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~-~-~~~~~~~-L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.++.++|.|.+.+.......|.|++||..+..+..... . ..+|.++ .....+...+...|+|++.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECC
Confidence 48999999999875556789999999999876543321 1 2334322 2222333566669999998854
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=55.03 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=39.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEeC-CE---EEEEEccCCCCCcE-EEEEEEEe
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDF-GY---VTLDITKCVPADSG-VYMCKAIN 715 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~-~~---~~L~I~~v~~~D~G-~Y~C~A~N 715 (808)
..+..+..++|.|.+...-.+...|+|++||+.+..+... ....++ .+ +.|.|. +.+.| .|+|.+.-
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H 83 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKH 83 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEE
Confidence 3455577899999995333346789999999987654211 111111 22 244444 33234 49999865
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=53.48 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=50.9
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEee--CCEEcc--------------CCCceE--EEecCceEEEEEccCC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFH--NNVPIK--------------SGSRFT--ETNNFGFVALDIMQCL 249 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~--~g~~l~--------------~~~~~~--~~~~~~~~~L~I~~~~ 249 (808)
++....+..|+.++|.|.+++..... ..+.|+| +| .+. ...++. .......++|.|.+++
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 44556788899999999997655555 7899998 33 110 112222 2233456789999999
Q ss_pred CCCcEEEEEEEE
Q psy2145 250 PEDSGVYTCRAV 261 (808)
Q Consensus 250 ~~D~G~Y~C~a~ 261 (808)
.+|++.|.|..+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999863
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0031 Score=52.48 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcc--eEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDFG----YVTLDITKCVPADSGVYMCKAINRAGE--AVSS 723 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~--~~~s 723 (808)
.....+.|.+. .|.|.+.|.|+++ +........ ...+| .+.|.+.....+|.-.|+|.|.|..-. ...+
T Consensus 15 ~~~~va~C~s~-~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~ 90 (95)
T cd05719 15 EPVTVATCVSA-NGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS 90 (95)
T ss_pred CccEEEEEECC-CCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 34577899886 7999999999997 111111111 11122 346777665555666799999999744 3444
Q ss_pred EEEE
Q psy2145 724 TSLK 727 (808)
Q Consensus 724 ~~l~ 727 (808)
+.|.
T Consensus 91 ~~L~ 94 (95)
T cd05719 91 VTLN 94 (95)
T ss_pred EEee
Confidence 4443
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.017 Score=53.41 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=58.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCC-EEeec------------------cCcEEEEeeCCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNG-RPVTI------------------GHRFRPIHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-~~l~~------------------~~r~~~~~~~~~~~L~I~~~~~~D~G 121 (808)
.+..|++|.|.|.... ++.-....|+++. ..|.. ...+.++-++..++|+|.++..+..|
T Consensus 35 ~a~vd~~V~L~C~~~~-~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 35 NATVDQEVKLQCLFKD-ADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hccCCCcEEEEecCCC-cchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 6788999999999653 4555688999844 33331 12345566778889999999999999
Q ss_pred eEEEEEEecCcceEE-EEEEEE
Q psy2145 122 TYTCRAVNLVGFAEV-QATLQC 142 (808)
Q Consensus 122 ~Y~C~a~n~~g~~~~-~~~l~V 142 (808)
-|+|+|....+..+. .--|.|
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred ceEEEEecCCCchheeheeeeE
Confidence 999999886554432 444544
|
|
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0041 Score=51.81 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=42.1
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc-e-EEEe-cCce---EEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-F-TETN-NFGF---VALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~-~-~~~~-~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.++.++|.|.+.+.-.+...|+|+|||+. ..+.. . .... ++.+ ..|.+..-.....-.|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999865556789999999998 33311 0 1122 2222 235555433333568999998853
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0049 Score=51.28 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=44.4
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE-EeeCc----EEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT-KHDFG----YVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
....+.|.+. .|.|.+.|+|+++ +........ ...+| ...|.+.....+|.-.|+|+|.|..-.....
T Consensus 16 ~~~va~C~s~-~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSA-NGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECC-CCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4567899986 7999999999997 211111111 11122 2367787777777789999999987443333
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0025 Score=53.04 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=45.5
Q ss_pred eecCceeecCCCeEEEEEEEeecC-CCCeEEEEeeCCEEccCCCceEEEecCc-e---EEEEEccCCCCCcEEEEEEEEe
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFG-F---VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~-~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~---~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
..|....+..+..++|.|.+.+.. .....|.|.++|.. ...........++ + ..|.|..-...-...|+|++.+
T Consensus 9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H 87 (99)
T cd04986 9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTH 87 (99)
T ss_pred ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEEC
Confidence 334445566789999999997645 34689999999876 2111111122223 2 2355553333444579999988
Q ss_pred Cc
Q psy2145 263 AL 264 (808)
Q Consensus 263 ~~ 264 (808)
..
T Consensus 88 ~~ 89 (99)
T cd04986 88 PE 89 (99)
T ss_pred CC
Confidence 53
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0062 Score=50.55 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=44.6
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
..+.+.|.+. .|.|.+.|+|+++..... ........++. .+.|.+..-..+|...|+|.|+|..-.......+
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 3578999885 699999999999821110 00111111222 2467776655566668999999997544444333
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0021 Score=48.21 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=42.7
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.+.|.|.|.+ .-.|.|++ |..+.... ..+|.+-....+-.|.|.|.|+| ...+..|.|.
T Consensus 6 ~~~V~L~C~~------~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNG------ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecC------CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 4579999965 24599999 76665322 22799999999999999999988 2344555554
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0062 Score=50.74 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=41.7
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc-E-EEEe-eCCeE---EEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR-F-RPIH-DFGYV---ALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r-~-~~~~-~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++.++|.|.+.++-.+...|+|+|||.. ..+.. . .... ++.+. .|.|....-.....|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46779999999986556779999999998 43311 0 1122 33222 34444332222567999998864
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0062 Score=50.53 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=46.8
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCc---EEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG---YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
..+.++|.+. .|.|.+.|+|+++...... .......++. ...|.+.....+|.-.|+|+|.|..-.......++
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3578999875 7999999999998211110 0111111222 23577777677778899999999875554444443
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0036 Score=52.10 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=45.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCC-CCCceEEEEeCCEEeecc-CcEEEEeeCCeE---EEEEcccCcCCC-eeEEEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIG-HRFRPIHDFGYV---ALDIIDTIPEDS-GTYTCRA 127 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~-~p~~~v~W~~~g~~l~~~-~r~~~~~~~~~~---~L~I~~~~~~D~-G~Y~C~a 127 (808)
..|... .+..+..++|.|.+.++. .....|.|.++|.. ..- .......|+.+. .|.|..- .-.+ ..|+|++
T Consensus 9 ~pPs~e-~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~-~W~~g~~ytC~V 85 (99)
T cd04986 9 QRPALE-DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAE-EWNKGEPFACTV 85 (99)
T ss_pred ECcChH-HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHH-HhcCCCeEEEEE
Confidence 334443 566789999999999865 44679999999875 110 000111233222 4554422 2233 4599999
Q ss_pred EecCc
Q psy2145 128 VNLVG 132 (808)
Q Consensus 128 ~n~~g 132 (808)
.+...
T Consensus 86 ~H~~l 90 (99)
T cd04986 86 THPEG 90 (99)
T ss_pred ECCCc
Confidence 87643
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0028 Score=47.59 Aligned_cols=60 Identities=17% Similarity=0.384 Sum_probs=42.4
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
.+.|.|+|.+ . -.|.|+| |..+.... ..+|.+.....+-.|.|.|.+++ ...+..|.|..
T Consensus 6 ~~~V~L~C~~--~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNG--A----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecC--C----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 4579999964 1 4499999 66554322 11789999999999999999987 33445566654
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.001 Score=57.71 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=51.6
Q ss_pred ccCCceEEEEEEEee---CCCCCeEEEEEECCEEccC--CCcEEEE---------E--eCCEEEEEEccCCCCCcEEEEE
Q psy2145 648 IMEGQSAHYDCRVVP---VGDPTMRFEWFVNGVELKM--GSRFHVQ---------H--DFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 648 v~~G~~v~l~C~v~~---~g~P~p~i~W~~~g~~l~~--~~~~~~~---------~--~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
..-.++|.|.|.+.. ...+...|.|.++|+.+-. +...... . -.|.++|.+.....- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 456899999999831 1235778999999987742 1111110 1 134467888886655 999999
Q ss_pred EEEeCCcceEEEEEEEEEe
Q psy2145 712 KAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 712 ~A~N~~G~~~~s~~l~V~~ 730 (808)
.+.+...+.+..+.|.+..
T Consensus 103 eVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRV 121 (130)
T ss_dssp EEEETTEEEEEEEEEEE--
T ss_pred EEEecCCCceEEEEEEEEE
Confidence 9999999999999888753
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0033 Score=45.88 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.2
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecC
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 145 (808)
.|.|.++..+|+|.|.|..+|..-..+.++.|+|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 6999999999999999999998888888899988643
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=48.92 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=49.2
Q ss_pred cccCCCCcEEE-EEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeC---CeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 60 ENLRERGHAHF-ECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 60 ~~v~~G~~v~l-~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
..+.+|+.+.+ .|.+.+ +.|.+.|.|+.+..... ........++ -.+.|.+.....+|.-.++|++.+..-...
T Consensus 11 ~~~~~g~~~~vA~C~sa~-gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 11 LLIDGGNGTTLAACCAAE-GRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred eEeecCcceeEEEEEccC-CccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCC
Confidence 37889999999 999987 89999999998643221 1110111111 112577766777777889999998754333
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0028 Score=54.98 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=49.5
Q ss_pred cCCCCcEEEEEEEeeC---CCCCceEEEEeCCEEeec--cCcEEEE---------e--eCCeEEEEEcccCcCCCeeEEE
Q psy2145 62 LRERGHAHFECKLEPV---TDSNLKVEWFKNGRPVTI--GHRFRPI---------H--DFGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~---~~p~~~v~W~~~g~~l~~--~~r~~~~---------~--~~~~~~L~I~~~~~~D~G~Y~C 125 (808)
..=.++|.|.|.+... .-+...|.|.++|+.|-. +...... . ..|.++|.+.....- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3457899999999742 124568999999988752 1111110 1 135567888876554 799999
Q ss_pred EEEecCcceEEEEEEEEe
Q psy2145 126 RAVNLVGFAEVQATLQCR 143 (808)
Q Consensus 126 ~a~n~~g~~~~~~~l~V~ 143 (808)
.+.....+.+..+.|...
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999887777777777663
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0098 Score=48.82 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=43.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCC--ceEEEEeCCEEeeccCcEEEE-----eeCCeEEEEEcccCcCCCe-eEEEEEEec
Q psy2145 61 NLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPI-----HDFGYVALDIIDTIPEDSG-TYTCRAVNL 130 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~--~~v~W~~~g~~l~~~~r~~~~-----~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~ 130 (808)
.+.+|..+++.|.+.+ ..|. +.|.|+++...+.... +.-. .......++|... .+|.| .|+|+|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~-v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPD-VYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecC-cccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4579999999999986 3554 7899999776665332 2110 0112235555554 66666 899999643
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=43.25 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=33.9
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
.|-|-++..+|+|.|.|+..|..-....++.|.|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 59999999999999999999998888888888887653
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=47.94 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=47.3
Q ss_pred cccCCCceEE-EEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcE----EEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 515 AVEEGKNAHF-SCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY----VAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 515 ~v~~G~~v~l-~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
.+.+|+.+.+ .|.+. .|.|.+.|+|+.+...... .-.....+|. +.|.+...+.+|.-.++|.+.+..-
T Consensus 12 ~~~~g~~~~vA~C~sa-~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAA-EGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEcc-CCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 4678999999 99976 8999999999987432211 0011111121 2577777777788899999999754
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.1 Score=48.38 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=59.9
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEECCE-ecc----------C--------CCcEEEEeeCcEEEEEEccCCCCC
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV-PIQ----------A--------SNRVSTMHDFGYVALNFKYTYPED 384 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-~l~----------~--------~~~~~~~~~~~~~~L~I~~v~~~d 384 (808)
++....++++.|.|.. +.++.-.+..|+++.. -|. . ...+.+.-++..++|+|.++..+.
T Consensus 33 dv~a~vd~~V~L~C~~-~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLF-KDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecC-CCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3445679999999995 5666677899998542 222 0 123345556778899999999999
Q ss_pred CeEEEEEEEcCCcceEE-EEEEEEE
Q psy2145 385 SGTYTCRAVNELGEAVT-SSTLFVE 408 (808)
Q Consensus 385 ~G~Y~C~a~n~~g~~~~-~~~l~V~ 408 (808)
.|-|+|+|....+..+. ..-|.|+
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~ 136 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQ 136 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEe
Confidence 99999999986655443 4555553
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.025 Score=46.54 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=42.5
Q ss_pred ccCCCceEEEEEEeeCCCCC--cEEEEEECCEecCCCCCeEE-----EeeCcEEEEEECCCCCCCCE-EEEEEEEeC
Q psy2145 516 VEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKPLEDSSRITT-----KHDFGYVAMDLSHVRAEDEG-IYICKATNA 584 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~--~~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~ 584 (808)
+.+|..++++|.+. ...|. +.|.|++....+.... +.- ........+++... ++|.| .|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~-~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVP-DVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEec-CcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 57899999999994 56666 7799998776655332 111 00111234555554 66666 999998654
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.051 Score=52.81 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=52.2
Q ss_pred cCCceEEEEEEEeeCCC------CCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 649 MEGQSAHYDCRVVPVGD------PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~------P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
.-.+++.+.|.+ .. -...|.|.+||+.+-..+.- ..++|.+.... .=.|.|+|+|.+...+...
T Consensus 29 ~CN~TV~IpC~v---~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 29 TCNKTIVIVCNL---NLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK-NLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred ecCceEEEEeec---CChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc-cCCCceeEEEeecccCccE
Confidence 358899999998 34 36789999999988754332 12467666543 4499999999998777777
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
...|+-.
T Consensus 99 ~IeLk~~ 105 (286)
T PHA03042 99 TIELQYV 105 (286)
T ss_pred EEEEEEE
Confidence 7777665
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.021 Score=59.41 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=62.3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEE---CCEEccC--CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFV---NGVELKM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~---~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
..+..|+++.++|-+ .|.|.+.|.|-+ |+..+.. +..+.-..--....|.|-+....|+|.|+|.|.|.+|..
T Consensus 206 w~vg~wetcS~tCg~--~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGV--QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hhcccchhhcccccc--cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 457889999999999 799999999975 5543322 111110001124579999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2145 721 VSSTSLKVK 729 (808)
Q Consensus 721 ~~s~~l~V~ 729 (808)
..++.+.+.
T Consensus 284 ~rdv~c~s~ 292 (560)
T KOG4597|consen 284 RRDVPCSSV 292 (560)
T ss_pred eccceeeee
Confidence 999988765
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=3.2 Score=42.90 Aligned_cols=161 Identities=14% Similarity=0.217 Sum_probs=95.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCC-----------------CCCeEEEee------CcEEEEEECCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLED-----------------SSRITTKHD------FGYVAMDLSHVR 570 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~-----------------~~~~~~~~~------~~~~~L~I~~v~ 570 (808)
.+..|..|.|+|...--|+.... +.|+--|-++.+ ...+.+... -..++|+|.+++
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 57779999999998655555544 899876644431 122333321 223589999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 571 AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
-+.+|-|+|+|....-..++..-|.|...- |.. ...+
T Consensus 355 I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V-------------------------------------~f~------W~~e 391 (500)
T PHA02914 355 INNAGCYEAQAFMGKFKEECRHCFKVADHV-------------------------------------FFK------WNTE 391 (500)
T ss_pred EEcCCceEEEEecCcchhhhhhheEeccEE-------------------------------------EEE------EEec
Confidence 999999999998876666665555554311 111 1224
Q ss_pred Cce-EEEEEEEeeCCCCCeEEEEEECCEEccCCCc-------EEEEEeCCEEEEEEccCCCCC-cEEEEEEEEeCCc
Q psy2145 651 GQS-AHYDCRVVPVGDPTMRFEWFVNGVELKMGSR-------FHVQHDFGYVTLDITKCVPAD-SGVYMCKAINRAG 718 (808)
Q Consensus 651 G~~-v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~-------~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~A~N~~G 718 (808)
|.. -...|-+...-..++.|.|.-||........ ..+...-..+.+.|.+-...| --.-.|..--..|
T Consensus 392 ~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 392 GDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred cCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 443 4578888433345778999999876542111 111111224566776665555 3345566443333
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.04 Score=53.44 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCeEEEEEE-CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 666 PTMRFEWFV-NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 666 P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
..|.+.|.- ||+.|...+++.++..| .|.+.+....++|.|+|..+=+.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 478899997 78888888888887765 69999999999999999987654
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.051 Score=52.70 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCceEEEEe-CCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 80 SNLKVEWFK-NGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 80 p~~~v~W~~-~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.+|.+.|.. +|+.|....++.+...| .|.+.+...++||.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 356899998 56666655566655444 59999999999999999998654
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.052 Score=56.66 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=67.4
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee---CCEEccC--CCceEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH---NNVPIKS--GSRFTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~---~g~~l~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
|.+...+....+-.|+++.++|-+ .|.+.+.|+|.+ |+..+.. ...+..-.-.....|.|-+....|+|.|+|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~--~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tC 274 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGV--QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTC 274 (560)
T ss_pred cccccCcchhhcccchhhcccccc--cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceee
Confidence 455556677788999999999998 689999999976 4433321 111110011133479999999999999999
Q ss_pred EEEeCceeEEEEEEEEEee
Q psy2145 259 RAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~ 277 (808)
.|.|..|.....+.+.+..
T Consensus 275 s~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 275 SARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccccceeeccceeeeec
Confidence 9999999888888777653
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.6 Score=39.31 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCceEEEEeCCEEeeccC---cEEEEeeCCe---EEEEEc-ccCcCCCeeEEEEEEec
Q psy2145 80 SNLKVEWFKNGRPVTIGH---RFRPIHDFGY---VALDII-DTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 80 p~~~v~W~~~g~~l~~~~---r~~~~~~~~~---~~L~I~-~~~~~D~G~Y~C~a~n~ 130 (808)
-...+.||.||.++..+. +.....++.. ++|.+. +...+-.=..+|.+.-.
T Consensus 5 ~S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~ 62 (211)
T PF02124_consen 5 RSVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWY 62 (211)
T ss_pred CcEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEc
Confidence 345899999999887432 2222334312 356662 22333335689998743
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=94.01 E-value=3.2 Score=39.61 Aligned_cols=56 Identities=16% Similarity=0.430 Sum_probs=30.4
Q ss_pred EEEEEeeCCCC--CcEEEEEECCEecCCCCCeEEEe----eCcEEEEEECCCC--CCCCE--EEEEEEEe
Q psy2145 524 FSCRLIPVGDP--TLKVEWFRNEKPLEDSSRITTKH----DFGYVAMDLSHVR--AEDEG--IYICKATN 583 (808)
Q Consensus 524 l~C~v~~~g~P--~~~v~W~k~g~~l~~~~~~~~~~----~~~~~~L~I~~v~--~~D~G--~Y~C~a~N 583 (808)
..|.+ ...| ...+.|+-++............. ..| ...|.+.. .+..| +|+|.+.-
T Consensus 94 AVC~A--~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pg--lvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 94 AVCTA--RCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPG--LVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEc--ceeeCCCeEEEEEECCccCCCCCceeecCcccCCcc--eeEeecccCCCccCCceeEEEEEee
Confidence 34877 5566 36899998887643333222221 112 23333322 33456 99999853
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.36 Score=40.04 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=46.0
Q ss_pred EEEEEeeCCCCCeE--EEEEECCEEccC---CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEE
Q psy2145 656 YDCRVVPVGDPTMR--FEWFVNGVELKM---GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKV 728 (808)
Q Consensus 656 l~C~v~~~g~P~p~--i~W~~~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V 728 (808)
+...+...+.+... ++|..+..+... ++++.+..++. +|.|+.++..|+|.|.-.++|..|...+ .++|.|
T Consensus 30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 44444436777775 455433333332 35666666554 8999999999999999999999998743 345544
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.2 Score=47.84 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=56.2
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
.|.|.+++.+++|.|+--..|..+.....+.|.|..++.- ....|.-.. -.........|....
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~--~~~~Pp~~~--------------pv~P~~h~a~f~v~n 198 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQ--PQTPPAPLV--------------PQVPARHHTDFHVRG 198 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcC--CCCCCCCcc--------------ccCCccCCceEEEec
Confidence 6999999999999999999998885555566666542221 000000000 000011223444443
Q ss_pred CCCccccCCceEEEEEEEeeC-CCC--CeEEEEEE
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPV-GDP--TMRFEWFV 674 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~-g~P--~p~i~W~~ 674 (808)
=.......|+++.+.-..... .++ ...|.||+
T Consensus 199 YhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 199 YHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred ceeEEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 333456789998887776532 233 45899986
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.38 Score=47.01 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=47.4
Q ss_pred CCcEEEEEEEeeC---CCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEE
Q psy2145 65 RGHAHFECKLEPV---TDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141 (808)
Q Consensus 65 G~~v~l~C~~~~~---~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 141 (808)
.+++.+.|.+... +.....+.|.++|+.+-..+.. ...+|.+... ..=.|+|+|.|.+...+......|.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 5889999999741 1135689999999988643222 1134555443 2347999999998766556666655
Q ss_pred Ee
Q psy2145 142 CR 143 (808)
Q Consensus 142 V~ 143 (808)
-.
T Consensus 104 ~~ 105 (286)
T PHA03042 104 YV 105 (286)
T ss_pred EE
Confidence 43
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.56 Score=38.32 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=47.9
Q ss_pred ecCceeecCCCeEEEEEEEeecC---CCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVS---DNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~---~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
.++...+..|++++..|.+.... .....|.|..|+..+ ++.++...++. ..++++.+.....+-.|.|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDT-VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence 44556788999999999996322 246689999999955 45667766654 367888888777777888874
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.051 Score=61.57 Aligned_cols=291 Identities=14% Similarity=0.057 Sum_probs=153.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEee-CCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-FGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 139 (808)
...-++...+.|.+.+ .+...+.|+++......+-+...... -....|.+.+....+.|.+.|.+.+..-.......
T Consensus 63 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 140 (774)
T KOG1026|consen 63 TEIFIENGQLLCIVSG--NDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTEL 140 (774)
T ss_pred HHHHHhhhhhcccccC--CCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchh
Confidence 5667888889999985 33338999998877665433321110 11124777777778888888888775433222222
Q ss_pred EEEecCCCccccccccccceeeeeecccccccc---ccccc--------cccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR---GEYIE--------ETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 140 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
+.+. .+. ....+...++..++-.....|.. ..+.. .....-+..........+..|..+++.|..
T Consensus 141 ~~~~-~~~--~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~- 216 (774)
T KOG1026|consen 141 SLVG-NPF--TCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQ- 216 (774)
T ss_pred hhcc-CCC--CcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeec-
Confidence 2222 111 11111111111111111111111 11110 000111111111124567889999999999
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCccccccccc
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~ 288 (808)
.+.|.+.+.|+.++.............. .. ...+.+ ++|.++|..|....++.+.+..++..
T Consensus 217 -~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~~~~~p~~~------- 278 (774)
T KOG1026|consen 217 -AGIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILLVVDLPKAE------- 278 (774)
T ss_pred -ccCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeeeEEeccccc-------
Confidence 6899999999998776654332221111 11 111211 99999999998887777777643211
Q ss_pred chhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEe-ecCCCccEEEEEECCEeccCCCcEEEE
Q psy2145 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI-PVGDSKLKVTWLRNGVPIQASNRVSTM 367 (808)
Q Consensus 289 ~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~-~~g~p~~~v~W~~~g~~l~~~~~~~~~ 367 (808)
...... .++ +=.|... ..++|.+...|..+|..+.........
T Consensus 279 ------------------------------~~~~~~----~~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t 322 (774)
T KOG1026|consen 279 ------------------------------VLLCSP----LSD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVT 322 (774)
T ss_pred ------------------------------ccCCCC----ccc--cCceeeeeccCCCCCceeeeecCccceEecccccc
Confidence 100000 000 1122221 035777888898888765433222111
Q ss_pred eeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy2145 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 368 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 411 (808)
..+..--+....-...+.|.|+|.+.|..|.........+...|
T Consensus 323 ~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 323 KSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cccCcCCcccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 11100112233335678999999999999988877666666555
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.27 Score=40.78 Aligned_cols=71 Identities=17% Similarity=0.389 Sum_probs=44.5
Q ss_pred ceEEEEEEeeCCCCCcE--EEEEECCEecCC---CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 521 NAHFSCRLIPVGDPTLK--VEWFRNEKPLED---SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 521 ~v~l~C~v~~~g~P~~~--v~W~k~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.+.-.-.. .+.+... ++|..+..+... +.++....++. .|.|+.++..|+|.|..+++|..|.. ....+.
T Consensus 29 sv~WK~~l--~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~Fq 103 (108)
T PF11465_consen 29 SVQWKMQL--PSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQ 103 (108)
T ss_dssp EEEEEEEE--TSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEE
T ss_pred EEEEEEEc--ccCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcE-EEEEEE
Confidence 34444443 5666665 566544433332 24555554444 89999999999999999999999987 444444
Q ss_pred E
Q psy2145 596 I 596 (808)
Q Consensus 596 V 596 (808)
|
T Consensus 104 V 104 (108)
T PF11465_consen 104 V 104 (108)
T ss_dssp E
T ss_pred E
Confidence 4
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=6.3 Score=42.63 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=55.1
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccc-cccccCCCCeE
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY-IEETTTQAPIF 186 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~ 186 (808)
..|.|.+++.+++|.|+-...+..+.......|+|..+....... .... ..........|
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~-------------------Pp~~~pv~P~~h~a~f 194 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTP-------------------PAPLVPQVPARHHTDF 194 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCC-------------------CCCccccCCccCCceE
Confidence 369999999999999999999877644455556665422110000 0000 00001223344
Q ss_pred Eeec-CceeecCCCeEEEEEEEeecC-CC--CeEEEEee
Q psy2145 187 TTSL-KNCEIKEGQRAHFECRLIPVS-DN--TMKVEWFH 221 (808)
Q Consensus 187 ~~~~-~~~~v~~G~~v~L~C~~~~~~-~p--~~~v~W~~ 221 (808)
.... .......|+++.+.-.....- .+ .+.|.||.
T Consensus 195 ~v~nYhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 195 HVRGYHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEecceeEEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 4433 345677899988877664211 22 46899986
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.47 Score=38.76 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=47.8
Q ss_pred CCCccccCCCCcEEEEEEEeeCC---CCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVT---DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~---~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
|+.. .+..|++++..|.+...- .....|.|..|+. ..++++++...+.. +.++|.+.....+-.|.|..
T Consensus 10 p~~p-vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~iP~~qy~~in~~~-SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSP-VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KIPGSQYRVINDTV-SSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSS-EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ESTCGCEEEESTTE-EEEEESS--SSEEEEEEEEE
T ss_pred cCCC-EEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-ECChhHcceeCCeE-EEEEEccCCCCCceEEEEEE
Confidence 3444 688999999999998521 2556899999999 55567777666554 68888888777777788874
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=11 Score=40.17 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=24.8
Q ss_pred CEEEEEEccCCCCCcEEEEEEEE-eCCcceEE
Q psy2145 692 GYVTLDITKCVPADSGVYMCKAI-NRAGEAVS 722 (808)
Q Consensus 692 ~~~~L~I~~v~~~D~G~Y~C~A~-N~~G~~~~ 722 (808)
+.+.|.+.++...++|.|.|++. |.+=.+-.
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~ 362 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGHVHAWG 362 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCeeeeeE
Confidence 34589999999999999999985 76655433
|
|
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.82 Score=36.47 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=35.8
Q ss_pred CeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE-EeCCcceEEEEEEEE
Q psy2145 667 TMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA-INRAGEAVSSTSLKV 728 (808)
Q Consensus 667 ~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N~~G~~~~s~~l~V 728 (808)
.+++.|+-.|..+..... .+.......+|+|.++|.| .|..-.-.+...|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777776655533222 4566677889999999999 666666666666655
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.43 Score=48.93 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=38.2
Q ss_pred cEEEEEEEeeCCCCCceEEEEeC---------C---EEeeccCc-----------EEEEeeCCeEEE-EEcccCcCCCee
Q psy2145 67 HAHFECKLEPVTDSNLKVEWFKN---------G---RPVTIGHR-----------FRPIHDFGYVAL-DIIDTIPEDSGT 122 (808)
Q Consensus 67 ~v~l~C~~~~~~~p~~~v~W~~~---------g---~~l~~~~r-----------~~~~~~~~~~~L-~I~~~~~~D~G~ 122 (808)
.++|+|.+.++-.....+.|.|| | ..+..+.. .....|++.+.+ .-..+..+|...
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~ 295 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ 295 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence 57999999986455678999999 5 22222111 111123223322 112455667778
Q ss_pred EEEEEEec
Q psy2145 123 YTCRAVNL 130 (808)
Q Consensus 123 Y~C~a~n~ 130 (808)
|+|.+.+.
T Consensus 296 Y~C~V~Hs 303 (338)
T PHA02865 296 IVCVVFHS 303 (338)
T ss_pred cEEEEEeC
Confidence 99999875
|
|
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.23 Score=56.52 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=100.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+..|..+++.|.+ .+.|.+.+.|+.++............-. .. ...+.+ ++|.++|..|....++.+
T Consensus 203 ~v~~~~~~~~~c~~--~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQ--AGIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhcccchheeeeec--ccCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeee
Confidence 57889999999999 8999999999998766554332111110 11 111211 999999999998888877
Q ss_pred EEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEE
Q psy2145 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674 (808)
Q Consensus 595 ~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~ 674 (808)
.+..+.-.. .+.. .......+ +.--+ .++|.+.-.|..
T Consensus 271 ~~~~p~~~~-------------------------------------~~~~--~~~~~~~C-~~~~~--~~~~~~~~~~~~ 308 (774)
T KOG1026|consen 271 VVDLPKAEV-------------------------------------LLCS--PLSDHHNC-IPIGI--TANPGPALHWCY 308 (774)
T ss_pred EEecccccc-------------------------------------cCCC--CccccCce-eeeec--cCCCCCceeeee
Confidence 776532211 0000 01111111 11112 467888899999
Q ss_pred CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 675 NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 675 ~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
||..+.-.+....+..+...-+....-...+.|.|+|.+.|..|.........+...|
T Consensus 309 ~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 309 NGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cCccceEecccccccccCcCCcccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 8876543222211111100123333335678999999999999999888888877666
|
|
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=10 Score=40.31 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEccCCCCCcEEEEEEEEe
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+.|.+.|+..+++|.|.|++.-
T Consensus 333 VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred cceEecCCCcccCceEEEEEEE
Confidence 4799999999999999999964
|
|
| >PRK14081 triple tyrosine motif-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=35 Score=39.01 Aligned_cols=143 Identities=12% Similarity=0.181 Sum_probs=75.6
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe--Cce----eEE
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN--ALG----QAV 268 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~g----~~~ 268 (808)
...|+.+.|.+.+. |.-...+...-+|..+... .+. +-..-+-.++.+|.|...+.- ... .+.
T Consensus 302 ql~g~~I~ika~a~--GG~~llYrf~I~G~~~e~~-~Y~--------~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~ 370 (667)
T PRK14081 302 QLTDTDIELKAVAE--GGKELLYRFIIKGKESEDS-GYI--------RNNIYTWKPKIAGKYSITLWVKDISSKGEYEDK 370 (667)
T ss_pred eecCceEEEEEEec--CCCceEEEEEECCcEEeec-ccc--------ccceEEEeeCCCceEEEEEEEEcCcCcccccce
Confidence 45799999999995 4445556555455544221 111 111222346679999877642 111 234
Q ss_pred EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCe-ec--cCCCceEeecCCeEEEEEEEeecCCC
Q psy2145 269 TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV-FT--QPMRDIHVAENQAAHFEARLIPVGDS 345 (808)
Q Consensus 269 ~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~-~~--~~~~~~~v~~G~~~~l~C~~~~~g~p 345 (808)
..+.+.+...+ ..|. +. ..+....+..|+++.+.|.+ .|.-
T Consensus 371 ~~v~f~i~~~~----------------------------------~~p~~I~~vl~d~~~~~lvG~~i~i~v~a--~gg~ 414 (667)
T PRK14081 371 SSIDYTIEEKS----------------------------------KEPIKIEDVILDKGKHILKGEEIKIRVIA--EGGT 414 (667)
T ss_pred EEEEEEEcccC----------------------------------CCCeEEEEEEECCCCceEeCCeEEEEEEe--cCCC
Confidence 44555554321 1222 11 11223456679999999998 4443
Q ss_pred ccEEE--EEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 346 KLKVT--WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 346 ~~~v~--W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
...+. =.+||..+...+- . ... .+.+ .+.-+|.|+..+.
T Consensus 415 ~~lY~f~ik~ng~~ve~~~Y---~-~~~--~~~f---~P~~~G~Y~IeV~ 455 (667)
T PRK14081 415 NLRYSFIIKKDGKEEEKIDY---G-KNN--WVNF---IPEEKGNYELEVR 455 (667)
T ss_pred eEEEEEEEEECCEEEEEeec---c-ccc--EEEE---EECCCeeEEEEEE
Confidence 44433 2347776653210 0 001 2332 3577899988664
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.2 Score=45.90 Aligned_cols=38 Identities=8% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN 222 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~ 222 (808)
..||.+.+.-.. . .+ .++|.|.+.+.-.....+.|.||
T Consensus 201 ~vpP~V~Vt~k~--~-~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 201 PVTPTVKVTGEE--L-GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCceEEeccc--C-CC-CceEEEEEEeEeCCccEEEEEec
Confidence 457776654331 1 22 68999999876666789999999
|
|
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.3 Score=33.90 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=34.6
Q ss_pred CcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE-EeCCeeEEEEEEEEEE
Q psy2145 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA-TNALGEAVTTASMKIK 597 (808)
Q Consensus 535 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~~~~s~~l~V~ 597 (808)
.+.+.|+-.+..+.... . .+.......+|+|.++|.| .+..-.......|.|.
T Consensus 26 ~~~~~l~~~~~k~~~~~--------~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETK--------K--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp CEEEEEECSSCEEEEES--------S--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred ChhheeeccCccccccc--------e--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 45677776554432221 1 4566677889999999999 7766666666666553
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=33 Score=36.54 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=54.0
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.|.|.+++..++|.|+--..|+.|....+ +-|.|.....-. .|. .-.+. .....+..|...
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r----~p~-------~~~pv-------~p~~~~~~f~l~ 189 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRAR----DPT-------MNIPI-------TPPSTRVDLSLK 189 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCC----CCC-------cccCC-------CCcccceEEEEe
Confidence 69999999999999999999987765554 455554331100 000 00000 000112344444
Q ss_pred cCCCccccCCceEEEEEEEeeCCCC---CeEEEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVGDP---TMRFEWFV 674 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~ 674 (808)
.........|+++.+.-.....-+. ...|.|++
T Consensus 190 ny~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 190 NFKAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred cccceEecCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 4444457789999877666411122 45899986
|
|
| >PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs) | Back alignment and domain information |
|---|
Probab=88.04 E-value=5.1 Score=32.78 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=36.9
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 653 ~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
...|.+++ .|. ...+.||.||+.+...... ..+.+. ....|.|+..+....|...+
T Consensus 31 ~~~l~l~a--~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKA--AGG-RGPVYWFVDGEPLGTTQPG--------HQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEE--eCC-CCcEEEEECCEEcccCCCC--------CeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 44445555 344 4499999999999443221 123332 25689999999999998765
|
A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold. |
| >PHA03281 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=10 Score=41.13 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=54.3
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.|.|.+++..++|.|+--.....|.... .+-|.|+..+...+.. +. .........|...
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~-------------------p~-Vtpk~hga~F~vk 358 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDL-------------------PA-VTPKPKGAEFHMW 358 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCC-------------------CC-ccccccCceEEEe
Confidence 6999999999999999888866665444 4445554432100000 00 0001112335444
Q ss_pred cCCCccccCCceEEEEEEEeeCC-CC--CeEEEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVG-DP--TMRFEWFV 674 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g-~P--~p~i~W~~ 674 (808)
.-.......|+++.|...+.+.- +. ...|.||+
T Consensus 359 nYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 359 HYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred ccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 33334567899999988886442 22 45899986
|
|
| >PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function | Back alignment and domain information |
|---|
Probab=86.89 E-value=0.23 Score=30.26 Aligned_cols=22 Identities=64% Similarity=1.001 Sum_probs=19.1
Q ss_pred ccccccCcccccccccccCCCC
Q psy2145 602 LQLETQHPEGLKKIQELEQPAS 623 (808)
Q Consensus 602 i~~~~~~p~~~~~i~~l~~~~~ 623 (808)
|.++++||+++.+|+.||+...
T Consensus 1 I~~dTQhp~~lekIq~LE~~~~ 22 (28)
T PF06582_consen 1 IILDTQHPESLEKIQELEDPSR 22 (28)
T ss_pred CcccccCHHHHHHHHHHHcccc
Confidence 4578999999999999998765
|
This repeat seems to always be found with IPR007110 from INTERPRO. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=86.56 E-value=0.66 Score=50.40 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=17.5
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.|.|.+++.+|+|.|+-...|..|..... +.|.|....... ....|. ..+ ........|...
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~-~~p~p~--~p~--------------~p~~~~~~~~~~ 152 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP-RTPPPH--HPI--------------VPHRHGATFHLK 152 (439)
T ss_dssp -------------------------------------------------------------------------SEEEEEE
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC-CCCCCC--CCC--------------CCcccccEEEEe
Confidence 59999999999999999999887765544 444444422210 000000 000 000011234433
Q ss_pred cCCCccccCCceEEEEEEEeeCCCC----CeEEEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVGDP----TMRFEWFV 674 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g~P----~p~i~W~~ 674 (808)
.........|+++.|.-.+.+.-.. ...|.||+
T Consensus 153 ~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 153 NYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred ccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 3333457889998888877543222 35899986
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=86.54 E-value=2.9 Score=45.53 Aligned_cols=93 Identities=19% Similarity=0.324 Sum_probs=16.7
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEE-EEEEEEecCCCcc-ccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEV-QATLQCRGSAGIL-TSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
.|.|.+++.+|+|.|+-...+..+.... .+.|.|....... .... ............|
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p--------------------~~p~~p~~~~~~~ 149 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPP--------------------HHPIVPHRHGATF 149 (439)
T ss_dssp ----------------------------------------------------------------------------SEEE
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCC--------------------CCCCCCcccccEE
Confidence 5999999999999999999877655433 3455555432210 0000 0000001112233
Q ss_pred Ee-ecCceeecCCCeEEEEEEEeecCC--C--CeEEEEee
Q psy2145 187 TT-SLKNCEIKEGQRAHFECRLIPVSD--N--TMKVEWFH 221 (808)
Q Consensus 187 ~~-~~~~~~v~~G~~v~L~C~~~~~~~--p--~~~v~W~~ 221 (808)
.. .........|+++.|.-.+..... + .+.|.||.
T Consensus 150 ~~~~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 150 HLKNYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EEE--SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred EEeccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 33 334566789999887776643222 2 46899986
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs) | Back alignment and domain information |
|---|
Probab=86.01 E-value=8.7 Score=31.41 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=46.5
Q ss_pred cCCCeeeecCCCccc-ccCC--CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 501 KQRPVFTKPLQNIDA-VEEG--KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~-v~~G--~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
..+|.|+.|...... +..+ +...|.+.+ .+. ...+.||-||+.+...... . .+.+.. ...|.|
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a--~~~-~~~~~W~vdg~~~g~~~~~------~--~~~~~~---~~~G~h 73 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKA--AGG-RGPVYWFVDGEPLGTTQPG------H--QLFWQP---DRPGEH 73 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEE--eCC-CCcEEEEECCEEcccCCCC------C--eEEeCC---CCCeeE
Confidence 346777777665532 2222 244455555 334 4489999999999443321 1 233332 467999
Q ss_pred EEEEEeCCeeEEE
Q psy2145 578 ICKATNALGEAVT 590 (808)
Q Consensus 578 ~C~a~N~~G~~~~ 590 (808)
+..+....|...+
T Consensus 74 ~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 74 TLTVVDAQGRSAS 86 (89)
T ss_pred EEEEEcCCCCEEE
Confidence 9999999887665
|
A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold. |
| >PRK14081 triple tyrosine motif-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=79 Score=36.31 Aligned_cols=164 Identities=14% Similarity=0.191 Sum_probs=88.4
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEE-E-EECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE--eCCe----
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVE-W-FRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT--NALG---- 586 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~-W-~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~--N~~G---- 586 (808)
.+..|+++.+.|.+. |.-...+. | .+||..+.... +. ... .+.+ .+.-+|.|+..+. |...
T Consensus 397 ~~lvG~~i~i~v~a~--gg~~~lY~f~ik~ng~~ve~~~-Y~---~~~--~~~f---~P~~~G~Y~IeV~vKdk~S~~~y 465 (667)
T PRK14081 397 HILKGEEIKIRVIAE--GGTNLRYSFIIKKDGKEEEKID-YG---KNN--WVNF---IPEEKGNYELEVRVKDKYSDKEY 465 (667)
T ss_pred ceEeCCeEEEEEEec--CCCeEEEEEEEEECCEEEEEee-cc---ccc--EEEE---EECCCeeEEEEEEEecccCchhc
Confidence 356799999999994 44444443 2 45887665321 10 011 2333 3467899988653 3322
Q ss_pred eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCe-EEee-cCCCccccCCceEEEEEEEeeCC
Q psy2145 587 EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI-FTQL-LTGTSEIMEGQSAHYDCRVVPVG 664 (808)
Q Consensus 587 ~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~-~~~~-~~~~~~v~~G~~v~l~C~v~~~g 664 (808)
.....+.|.|.... |. +... .+.......|+.+++.|.++ |
T Consensus 466 D~~k~v~l~V~e~~-----------------------------------P~~i~~il~~~~~~~~vg~~i~~~~~~~--~ 508 (667)
T PRK14081 466 DAHTIVYIKVHEYI-----------------------------------PAEIDYILLPVKEYYLVGDDIEIEVIIQ--N 508 (667)
T ss_pred ccceEEEEEEeccC-----------------------------------ceeeeeEEecccccEEeCCEEEEEEEEe--C
Confidence 23455667666421 32 2221 12223467899999999994 5
Q ss_pred CCCeEEE--EEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE--EeCCc----ceEEEEEEEEEeCCCcc
Q psy2145 665 DPTMRFE--WFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA--INRAG----EAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 665 ~P~p~i~--W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A--~N~~G----~~~~s~~l~V~~~p~~~ 735 (808)
.-..-+. -+.||..+...+.. ... .+.+. +--+|.|+..+ .|... .+...+.+.|..+..+.
T Consensus 509 ~k~v~y~y~~~~NG~~v~~t~Ys----~~~--~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~ 578 (667)
T PRK14081 509 TKDVLIKYILKINGHKVEETDYI----KNK--KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPIT 578 (667)
T ss_pred CCeEEEEEEEEECCEEEEEeecc----ccc--eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCce
Confidence 4444443 44577766322110 011 23332 56799999875 44443 23345566676553333
|
|
| >PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily | Back alignment and domain information |
|---|
Probab=84.77 E-value=17 Score=29.68 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.+.|+...|..|+++.+.|... -..+..+-|.- ....+.. ..+-..+.+.+++. | ..-.|.+.-.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts--C~~p~~~GLET~L~k~~~~~--------g~~W~~f~LsnV~~-d-s~~~C~~~C~ 73 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS--CPQPEKIGLETSLSKTELDS--------GPQWKAFQLSNVTE-D-SSPLCFFNCS 73 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES--SSS-SEEEEESSSEEEEEEE--------ETTEEEEEEEEE-S-C-EEEEEEEEET
T ss_pred EEEECCccEECCCCCEEEEEcCC--CCCCCcceEEEecCCcccCC--------CCcEEEEEEEcccc-C-CeEEEEEEcC
Confidence 45577888899999999999983 33233445532 1112222 22333677888875 5 4678998875
Q ss_pred ceeEEEEEEEEEeeCC
Q psy2145 264 LGQAVTSGNLLVHSKK 279 (808)
Q Consensus 264 ~g~~~~~~~l~V~~~~ 279 (808)
......++.|+|...|
T Consensus 74 g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 74 GEQSSASANITVYKPP 89 (91)
T ss_dssp TEEEEEEEEEEEEB--
T ss_pred CeEEEeEEeeEEeCCC
Confidence 4455667888887543
|
They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A. |
| >PHA03281 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=37 Score=37.02 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=53.0
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
.|.|.+++..++|.|+--.....|.... .+-|+|.......... ...........|.
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~----------------------p~Vtpk~hga~F~ 356 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDL----------------------PAVTPKPKGAEFH 356 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCC----------------------CCccccccCceEE
Confidence 6999999999999999888866554333 4555665432100000 0000012223444
Q ss_pred eec-CceeecCCCeEEEEEEEeec---CCCCeEEEEee
Q psy2145 188 TSL-KNCEIKEGQRAHFECRLIPV---SDNTMKVEWFH 221 (808)
Q Consensus 188 ~~~-~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~~ 221 (808)
... .+.....|+++.|.-.+.+. +.=.+.|.||.
T Consensus 357 vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 357 MWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 433 34556789999888887532 11246899986
|
|
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=15 Score=36.79 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEE-----EE----------ECCEEccCCCcEE-------EEEeCC--EEEEEEc
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFE-----WF----------VNGVELKMGSRFH-------VQHDFG--YVTLDIT 699 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~-----W~----------~~g~~l~~~~~~~-------~~~~~~--~~~L~I~ 699 (808)
.+.-+.+|+.+++.|.+-.-.-|...|. |- .+|..+.++-.++ +..-+. ..+|++
T Consensus 60 AP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF- 138 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF- 138 (348)
T ss_pred CccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-
Confidence 3456788999999999954445655554 21 1333443332222 222222 234444
Q ss_pred cCCCCCcEEEEEEEEeCC-cceEEEEEE
Q psy2145 700 KCVPADSGVYMCKAINRA-GEAVSSTSL 726 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~N~~-G~~~~s~~l 726 (808)
++..+-+|.|.|+..|.. |-...++.|
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeee
Confidence 456688999999999984 555555444
|
|
| >PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function | Back alignment and domain information |
|---|
Probab=81.21 E-value=0.9 Score=27.76 Aligned_cols=24 Identities=50% Similarity=0.630 Sum_probs=19.4
Q ss_pred ccccccccchhhhhhhhhcccccc
Q psy2145 281 IQTETQHGESLSRLQQLEQGRYQR 304 (808)
Q Consensus 281 i~~~~~~~~~~~~~~~~e~~~~~~ 304 (808)
|.++++|+.++.+|+.||+....|
T Consensus 1 I~~dTQhp~~lekIq~LE~~~~~R 24 (28)
T PF06582_consen 1 IILDTQHPESLEKIQELEDPSRQR 24 (28)
T ss_pred CcccccCHHHHHHHHHHHcccccC
Confidence 457899999999999999855443
|
This repeat seems to always be found with IPR007110 from INTERPRO. |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.91 E-value=3.9 Score=30.72 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=29.2
Q ss_pred CceeecCCCeEEEEEEEe-ecCCCCeEEEEeeCCEEc
Q psy2145 191 KNCEIKEGQRAHFECRLI-PVSDNTMKVEWFHNNVPI 226 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~-~~~~p~~~v~W~~~g~~l 226 (808)
..+.+..|..++|.|++. +.+...+.|.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 567788999999999996 334446789999998887
|
|
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=5.3 Score=30.06 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCccccCCCCcEEEEEEEee-CCCCCceEEEEeCCEEee
Q psy2145 56 PKSIENLRERGHAHFECKLEP-VTDSNLKVEWFKNGRPVT 94 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~-~~~p~~~v~W~~~g~~l~ 94 (808)
|..+ .+.-|..++|.|.+.- .+...+.|-|.-|+..+.
T Consensus 4 P~~i-~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGI-VTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccE-EEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4555 8889999999999973 123356889999999883
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 808 | ||||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 8e-14 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 8e-14 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 5e-11 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 5e-08 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 9e-11 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 2e-07 | ||
| 1tlk_A | 154 | X-Ray Structure Determination Of Telokin, The C-Ter | 1e-10 | ||
| 1tlk_A | 154 | X-Ray Structure Determination Of Telokin, The C-Ter | 5e-06 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 9e-10 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 1e-09 | ||
| 2yr3_A | 99 | Solution Structure Of The Fourth Ig-Like Domain Fro | 1e-09 | ||
| 2yr3_A | 99 | Solution Structure Of The Fourth Ig-Like Domain Fro | 2e-06 | ||
| 3zyo_A | 411 | Crystal Structure Of The N-Terminal Leucine Rich Re | 2e-07 | ||
| 3qp3_A | 103 | Crystal Structure Of Titin Domain M4, Tetragonal Fo | 3e-06 | ||
| 3qp3_A | 103 | Crystal Structure Of Titin Domain M4, Tetragonal Fo | 2e-05 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 4e-06 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 1e-05 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 5e-06 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 2e-05 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 2e-05 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 2e-05 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-05 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 3e-05 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 6e-05 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 3e-05 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 6e-05 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 4e-05 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 4e-05 | ||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 6e-05 | ||
| 1koa_A | 491 | Twitchin Kinase Fragment (C.Elegans), Autoregulated | 6e-05 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 6e-05 | ||
| 3zyj_A | 440 | Netring1 In Complex With Ngl1 Length = 440 | 1e-04 | ||
| 3kvq_A | 108 | Crystal Structure Of Vegfr2 Extracellular Domain D7 | 1e-04 | ||
| 3zyi_A | 452 | Netring2 In Complex With Ngl2 Length = 452 | 2e-04 | ||
| 3zyi_A | 452 | Netring2 In Complex With Ngl2 Length = 452 | 4e-04 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 2e-04 | ||
| 2dl9_A | 103 | Solution Structure Of The Ig-Like Domain Of Human L | 2e-04 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 3e-04 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 3e-04 | ||
| 3uto_A | 573 | Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin- | 3e-04 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 5e-04 | ||
| 1u2h_A | 99 | X-Ray Structure Of The N-Terminally Truncated Human | 6e-04 | ||
| 1u2h_A | 99 | X-Ray Structure Of The N-Terminally Truncated Human | 7e-04 |
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154 | Back alignment and structure |
|
| >pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99 | Back alignment and structure |
|
| >pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99 | Back alignment and structure |
|
| >pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411 | Back alignment and structure |
|
| >pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103 | Back alignment and structure |
|
| >pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440 | Back alignment and structure |
|
| >pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108 | Back alignment and structure |
|
| >pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452 | Back alignment and structure |
|
| >pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99 | Back alignment and structure |
|
| >pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 315 bits (808), Expect = 6e-98
Identities = 121/699 (17%), Positives = 216/699 (30%), Gaps = 160/699 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ + +E +CK++ P +++ W+K + ++ +L
Sbjct: 9 IEPLEHVE-AAIGEPITLQCKVDGTPE----IRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I D G YTC+A N VG A L I+ +
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLV-------------------IKERK----- 99
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
P F LK+ G FECR ++V W+ + +K +
Sbjct: 100 -----------LPPSFARKLKDVHETLGFPVAFECR--INGSEPLQVSWYKDGELLKDDA 146
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
+ L I+Q G Y C A N LG A +S L + +
Sbjct: 147 NLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV---------- 196
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
P F + +A ++ F+ + G + +K+T
Sbjct: 197 ------------------------PPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKIT 230
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
W ++ I+ L D+G YTC A N G+ S+ L V+
Sbjct: 231 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290
Query: 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEV----EVTQQPSFTVQ--LNGPTELVEG 464
I+ LE + K++E ++ P V + ++
Sbjct: 291 PRF------------IKKLEPSRI--VKQDEHTRYECKIGGSPEIKVLWYKDE--TEIQE 334
Query: 465 EGTIITDTQHPKGLEKIRKL--ED--------TEPHKRPEVDDNAT---KQRPVFTKPLQ 511
+ ++ L ED + + K+ PVF K
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG--SASSSTSLKVKEPPVFRKKPH 392
Query: 512 NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
+ +G + H C G P +V W ++++ L + + ++ + +V +
Sbjct: 393 PV-ETLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 449
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
D G Y CKA+N +G S+ +K
Sbjct: 450 ADIGEYQCKASNDVGSDTCVGSITLK---------------------------------- 475
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHD 690
P F + L+ + G+ + G + WF + E+ S + +
Sbjct: 476 --APPRFVKKLSDI-STVVGEEVQLQATI--EGAEPISVAWFKDKGEIVRESDNIWISYS 530
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL ++ PA++G Y C+ N AG +L V
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 9e-86
Identities = 109/575 (18%), Positives = 207/575 (36%), Gaps = 114/575 (19%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
+ P F L++ E G+ +C++ +++ W+ + ++S +
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
+L I + D G YTC+A N++G +S L++ +K
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL--------------------- 100
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
P F + ++D+H FE R G L+V+W ++G ++
Sbjct: 101 -------------PPSFARKLKDVHETLGFPVAFECR--INGSEPLQVSWYKDGELLKDD 145
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV---ESKASLQLDTQ 418
+ T L T G Y C A N LG A +S+ L + E L
Sbjct: 146 ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPV 205
Query: 419 NEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPK 476
+ ++ F + VT + + E+ G +T ++
Sbjct: 206 SVDLAL-----GESGTF------KCHVTGTAPIKITWAKDN-REIRPGGNYKMTLVENTA 253
Query: 477 GLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVFTKPLQNIDAVEEGKNA 522
L + + +A ++ P F K L+ V++ ++
Sbjct: 254 TLT----VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 309
Query: 523 HFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582
+ C++ G P +KV W+++E +++SS+ +++ ++ ED G Y C+A
Sbjct: 310 RYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 367
Query: 583 NALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642
NA G A ++ S+K+K E P+F +
Sbjct: 368 NAAGSASSSTSLKVK------------------------------------EPPVFRKKP 391
Query: 643 TGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV 702
E ++G H +C + G P + W + EL+ G ++ + + ++ I
Sbjct: 392 H-PVETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVD 448
Query: 703 PADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
AD G Y CKA N G S+ +K+ V +
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK 483
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 9e-19
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
E P F + L E G+ C+V G P +R W+ +L+ + +Q
Sbjct: 3 MEPPYFIEPLE-HVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNN 59
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+L I K +D G Y CKA N G SS L +K
Sbjct: 60 VASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK 96
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 8e-68
Identities = 109/711 (15%), Positives = 184/711 (25%), Gaps = 191/711 (26%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV- 108
++ C + PV W+K T V
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPV----PVFRWYKFIEGTTRKQAVVLNDRVKQVS 305
Query: 109 -ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I D + EDSG Y C N VG V+ L
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL--------------------------- 338
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVP 225
T T + G+ A F C+ P+ V W +
Sbjct: 339 -----------TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK----TVSWMKDGKA 383
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
I L I ED G+Y C N A S L + +
Sbjct: 384 IGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD----- 428
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345
PV Q ++ + + + G+
Sbjct: 429 -----------------------------PPVIRQAFQEETMEPGPSVFLKCV--AGGNP 457
Query: 346 KLKVTWLRNGVPIQASNRVS-----TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400
+++W +G I ++R T++ LN + D G Y C A +++G A
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 401 TSSTLFVESKASLQLDTQNEAALQKIQNLEDTS-RFKRKEEEEVEVTQQPSFTVQ----- 454
S+ L V ++ ++K + + V P ++
Sbjct: 518 HSAKLNVYGLPYIRQ-------MEKKAIVAGETLIV------TCPVAGYPIDSIVWERDN 564
Query: 455 ---LNGPTELVEGEGT-IITDTQHPKGLEKIRKLEDT-----EPHKRPEVDDNAT----- 500
+ V GT II + + D + +
Sbjct: 565 RALPINRKQKVFPNGTLIIENVERN---------SDQATYTCVAKNQEGYSARGSLEVQV 615
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDF 559
P + G+ C G L ++W + + + + ITT
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHCS--VPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673
Query: 560 GYVAM-DLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
++ + V A G + C A N G T + +
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY--------------------- 712
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
P + T +G A +C+ G P + W +
Sbjct: 713 ---------------VPPRWILEPT-DKAFAQGSDAKVECKA--DGFPKPQVTWKKAVGD 754
Query: 679 LKMGSRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
+ + D V TL + + G Y+C+AIN G +S+ +
Sbjct: 755 TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 2e-63
Identities = 97/703 (13%), Positives = 174/703 (24%), Gaps = 171/703 (24%)
Query: 68 AHFECKLEPVT-DSNLKVEWFKNGRPVTIGH-----RFRPIHDFGYVALDIIDTIPEDS- 120
A +C + D V W + ++ + G L I + PED
Sbjct: 156 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL-VLPSG--ELHIREVGPEDGY 212
Query: 121 GTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETT 180
+Y CR + + + +
Sbjct: 213 KSYQCRTKHRLTGETRL------SATKGRLVITEPISSAVPK------------------ 248
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
+ C W+ +
Sbjct: 249 ---VVSLAKFDMKTYSGSSTMALLC--PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 241 V--ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
V L I + EDSG Y C N++G L
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL------------------------- 338
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
TV+ V + A F + G+ V+W+++G I
Sbjct: 339 ------------TVTAPLSAKIDPPTQTVDFGRPAVFTCQYT--GNPIKTVSWMKDGKAI 384
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
S V L + ED G Y C N+ A S+ L + +
Sbjct: 385 GHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR-------- 426
Query: 419 NEAALQKIQNLEDTSRFKRKEEEEVEVT------QQPSFTVQLNGPTELVEGEGTIITDT 472
Q ++ + + V + P + +L+G ++ + +
Sbjct: 427 -FDPPVIRQAFQEET---MEPGPSVFLKCVAGGNPTPEISWELDG-KKIANNDRYQVGQY 481
Query: 473 QHPKGLEKIRKLEDTEPHKR-------------PEVDDNAT---KQRPVFTKPLQNIDAV 516
G + + L T H + +A P + + A+
Sbjct: 482 VTVNG-DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM-EKK-AI 538
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
G+ +C + G P + W R+ + L + + + + ++ R D+
Sbjct: 539 VAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE--RNSDQAT 594
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636
Y C A N G S++++ P
Sbjct: 595 YTCVAKNQEGY-SARGSLEVQVM----------------------------------VLP 619
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYV- 694
GQ C V G + +W ++G +
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSV--PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGS 677
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
L I + +G + C A N AG +T L V + E
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE 720
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 6e-62
Identities = 119/731 (16%), Positives = 198/731 (27%), Gaps = 186/731 (25%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVA 109
+ +P + + A ECK P+ ++ W + +G V R I G
Sbjct: 42 LKEPTNRIDFSNSTGAEIECKASGNPM----PEIIWIRSDGTAVGDVPGLRQISSDGK-- 95
Query: 110 LDIIDTIPED------SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163
L ED + Y C A N G +
Sbjct: 96 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD------------------------- 130
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHN 222
+ A + + + G A +C + V+D V W +
Sbjct: 131 ------------VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD 178
Query: 223 NVPI-----KSGSRFTETNNFGFVALDIMQCLPEDS-GVYTCRAVNALGQAVTSGNLLVH 276
+ ++ + L I + PED Y CR + L
Sbjct: 179 EEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG- 234
Query: 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP--VFTQPMRDIHVAENQAAH 334
R I E S P V + +
Sbjct: 235 ---------------------------RLVITEPISSAVPKVVSLAKFDMKTYSGSSTMA 267
Query: 335 FEARLIPVGDSKLKVTWLRNGVPIQASNRV--STMHDFGYVALNFKYTYPEDSGTYTCRA 392
G W + V + L K EDSG Y C
Sbjct: 268 LLC--PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV 325
Query: 393 VNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT 452
N +G + L V + S ++D + + + F + T P T
Sbjct: 326 NNSVGGESVETVLTVTAPLSAKIDPPTQTV-----DFGRPAVF------TCQYTGNPIKT 374
Query: 453 VQ--LNGPTELVEGEGT-IITDTQHPKGLEKIRKLEDT------------EPHKRPEVDD 497
V +G + E I + ED E+
Sbjct: 375 VSWMKDG-KAIGHSESVLRIESVK----------KEDKGMYQCFVRNDRESAEASAELKL 423
Query: 498 NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT--- 554
PV + Q +E G + C G+PT ++ W + K + ++ R
Sbjct: 424 GGRFDPPVIRQAFQEE-TMEPGPSVFLKCV--AGGNPTPEISWELDGKKIANNDRYQVGQ 480
Query: 555 --TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGL 612
T + ++++ V A D G+Y C A + +G A +A + +
Sbjct: 481 YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV---------------- 524
Query: 613 KKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW 672
Y P Q+ I+ G++ C V G P W
Sbjct: 525 --------------------YGLPYIRQM--EKKAIVAGETLIVTCPV--AGYPIDSIVW 560
Query: 673 FVNGVELKMGSRFHVQHDFGYVTLDITK-CVPADSGVYMCKAINRAGEAVS-STSLKVKS 730
+ L + + V + G TL I +D Y C A N+ G + S ++V
Sbjct: 561 ERDNRALPINRKQKVFPN-G--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Query: 731 KSDIVSESLQP 741
I+ + +
Sbjct: 618 LPRIIPFAFEE 628
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 3e-54
Identities = 94/666 (14%), Positives = 176/666 (26%), Gaps = 173/666 (25%)
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+++ + + + A+ G + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAAN------------------------------ 30
Query: 170 YQRGEYIEETTTQAPIFTT-SLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN---V 224
+ + P+F + A EC+ S N ++ W ++ V
Sbjct: 31 ------PPDADQKGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDGTAV 81
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPED------SGVYTCRAVNALGQAVTSGNLLVHSK 278
G R ++ L ED + VY C A N G ++ +
Sbjct: 82 GDVPGLRQISSDG----KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHV---- 133
Query: 279 KSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338
A + + HV +A +
Sbjct: 134 --------------------------------RAVVAQYYEADVNKEHVIRGNSAVIKCL 161
Query: 339 LIP-VGDSKLKVTWLRNGVPI-----QASNRVSTMHDFGYVALNFKYTYPEDS-GTYTCR 391
+ V D V+W + + + + L+ + PED +Y CR
Sbjct: 162 IPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCR 218
Query: 392 AVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSF 451
+ L S + + + + + T P
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278
Query: 452 TVQ-LNGPTELVEGEGTIITDTQHPKGLE-KIRK--LEDT------------EPHKRPEV 495
+ + ++ D I+ +ED+ +
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Query: 496 DDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555
A V+ G+ A F+C+ G+P V W ++ K + S +
Sbjct: 339 TVTA---PLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSESVLR 392
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
+ V+ ED+G+Y C N A +A +K+
Sbjct: 393 ----------IESVKKEDKGMYQCFVRNDRESAEASAELKL------------------- 423
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+++ P+ Q + G S C G+PT W ++
Sbjct: 424 --------------GGRFDPPVIRQAFQ-EETMEPGPSVFLKCVAG--GNPTPEISWELD 466
Query: 676 GVELKMGSRFHV-----QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G ++ R+ V + L+IT D G+Y C A ++ G A S L V
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Query: 731 KSDIVS 736
I
Sbjct: 527 LPYIRQ 532
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-39
Identities = 55/361 (15%), Positives = 98/361 (27%), Gaps = 89/361 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + + C + + W ++ R + I + + + G L I
Sbjct: 530 IRQMEKKA-IVAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQKVFPN-G--TLII 583
Query: 113 ID-TIPEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
+ D TYTC A N G+ A +Q
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV-------------------------- 617
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
I + + + GQ C +P D + ++W + I
Sbjct: 618 -----------LPRIIPFAFEEGPAQVGQYLTLHCS-VPGGDLPLNIDWTLDGQAISEDL 665
Query: 231 RFTETNNFGFVA-LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGE 289
T + + L I +G +TC A N G + L V+
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV------------ 713
Query: 290 SLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV 349
P + D A+ A E + G K +V
Sbjct: 714 -------------------------PPRWILEPTDKAFAQGSDAKVECKAD--GFPKPQV 746
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406
TW + + D V L+ + G Y C A+N +G +++ +
Sbjct: 747 TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806
Query: 407 V 407
Sbjct: 807 S 807
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 48/414 (11%), Positives = 83/414 (20%), Gaps = 116/414 (28%)
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
+N + + A+ G ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP----------------------------- 31
Query: 435 FKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIIT----------------DTQHPKGL 478
+ P F + + G I D +
Sbjct: 32 -------PDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV 84
Query: 479 EKIRKLED--------TEPHKRPEVDDNAT---------------------KQRPVFTKP 509
+R++ + +
Sbjct: 85 PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD 144
Query: 510 LQNIDAVEEGKNAHFSCRLIP-VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL-- 566
+ V G +A C + V D V W +E+ + +L
Sbjct: 145 VNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI 203
Query: 567 SHVRAED-EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPM 625
V ED Y C+ + L ++ K +
Sbjct: 204 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI------------------------- 238
Query: 626 PQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF 685
EP + + + C G P F W+
Sbjct: 239 -TEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFRWYKFIEGTTRKQAV 295
Query: 686 HVQHDFGYV--TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ V TL I V DSG Y+C N G T L V + +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 1e-14
Identities = 26/185 (14%), Positives = 47/185 (25%), Gaps = 45/185 (24%)
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
M++ + R + ++ A A G A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAA------------------------------- 29
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKMG 682
P+ + P+F + T + A +C+ G+P W +G +
Sbjct: 30 ---NPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDV 84
Query: 683 SRFHVQHDFGYVTLDITKCVPAD------SGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G L D + VY C A N+ G +S +
Sbjct: 85 PGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 142
Query: 737 ESLQP 741
+
Sbjct: 143 ADVNK 147
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 2e-60
Identities = 89/744 (11%), Positives = 180/744 (24%), Gaps = 192/744 (25%)
Query: 63 RERGHAHFECKLEPVTDSNLKV---EWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPED 119
+ C + SNL V + R V G+R G I +
Sbjct: 141 NKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKG---FTIPSYMISY 194
Query: 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179
+G C A + + +
Sbjct: 195 AGMVFCEAKINDESYQSIMYIV----------------------------------VVVG 220
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--------R 231
+ + E+ G++ C + + W + + + +
Sbjct: 221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 280
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
L I D G+YTC A + L S + VH K +
Sbjct: 281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV---------- 330
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
+ + + A+ +G ++ W
Sbjct: 331 ------------------------AFGSGMESLVEATVGERVRIPAK--YLGYPPPEIKW 364
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
+NG+P+++++ + H L D+G YT N + + S + +
Sbjct: 365 YKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFK---------------------RKEEEEVEVTQQPS 450
Q+ ++ + T E V+
Sbjct: 420 PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479
Query: 451 FTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEV-------------DD 497
+ + E +G I + +E K T + V
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539
Query: 498 NAT-----KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRN--------- 543
+ P T E ++ C + W++
Sbjct: 540 ERVISFHVTRGPEITLQPD--MQPTEQESVSLWCT--ADRSTFENLTWYKLGPQPLPIHV 595
Query: 544 -----------EKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ + ++ + + + M+L + +D+G Y+C A + +
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ 652
++ P T L G+
Sbjct: 656 VRQLTVLE--------------------------------RVAPTITGNLE-NQTTSIGE 682
Query: 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712
S C G+P + WF + L S ++ L I + D G+Y C+
Sbjct: 683 SIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQ 738
Query: 713 AINRAGEAVSSTSLKVKSKSDIVS 736
A + G A ++ + +
Sbjct: 739 ACSVLGCAKVEAFFIIEGAQEKTN 762
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 191 bits (485), Expect = 4e-51
Identities = 90/588 (15%), Positives = 177/588 (30%), Gaps = 102/588 (17%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT--------IGHRFRPIHD 104
V P L C + + W + +
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286
Query: 105 FGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164
L I D G YTC A + + + ++ +
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV---------------- 330
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHN 222
+ E G+R + P +++W+ N
Sbjct: 331 -------------------AFGSGMESLVEATVGERVRIPAKYLGYP----PPEIKWYKN 367
Query: 223 NVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG--NLLVHSKKS 280
+P++S + L IM+ D+G YT N + + S +L+V+
Sbjct: 368 GIPLESNHTIKAGHV-----LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 422
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP----VFTQPMRDIHVAENQAAHFE 336
I + +S + + G T + TV P + + A +
Sbjct: 423 IGEK----SLISPVDSYQYGT---TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475
Query: 337 ARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395
+ V + G I+ + N+ + + S Y C AVN+
Sbjct: 476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535
Query: 396 LGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE--------DTSRFKRKEEEEVEVTQ 447
+G + V + L + Q+ +L + + + + + +
Sbjct: 536 VGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 448 QPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR--KLED----------------TEP 489
T L + T+ +++ + + +++ L+D
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
++ V + + P T L+N G++ SC G+P ++ WF++ + L +
Sbjct: 656 VRQLTVLE---RVAPTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVE 709
Query: 550 SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
S I K + + VR EDEG+Y C+A + LG A A I+
Sbjct: 710 DSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 3e-48
Identities = 78/655 (11%), Positives = 159/655 (24%), Gaps = 134/655 (20%)
Query: 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGE 174
+ + C +L
Sbjct: 4 KVLLAVALWLCVETRAASVGLPSVSLD--------------------------------- 30
Query: 175 YIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE 234
P + IK CR + W +N + TE
Sbjct: 31 --------LPRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSGSEQRVEVTE 78
Query: 235 TNNFGFVA-LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293
++ F L I + + D+G Y C +V + + I +
Sbjct: 79 CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIAS---------- 128
Query: 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR 353
+ I +N+ +
Sbjct: 129 ----------------------VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP 166
Query: 354 NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413
+ NR+S G+ ++ +G C A + + V +
Sbjct: 167 EKRFVPDGNRISWDSKKGFTIPSYM---ISYAGMVFCEAKINDESYQSIMYIVVVVGYRI 223
Query: 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473
+ + ++ + + P+ + + + D +
Sbjct: 224 YDVVLSPSHGIELS-VGEKLVL----NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 474 HPKGLEKIRKLEDTEPHKRPEVDD------NAT----------------KQRPVFTKPLQ 511
G E ++K T D A+ K F ++
Sbjct: 279 TQSGSE-MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME 337
Query: 512 NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
++ G+ + +G P +++W++N PLE + I H + + V
Sbjct: 338 SLVEATVGERVRIPAK--YLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSE 390
Query: 572 EDEGIYICKATNALGEAVTTASM--------KIKTKAGLQLETQHPEGLKKIQELEQPAS 623
D G Y TN + + + + +I K+ + + G Q L
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG--TTQTLTCTVY 448
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
+P P E S + E F G ++++
Sbjct: 449 AIPP-PH------HIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501
Query: 684 -RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+F + + S +Y C+A+N+ G S V +I +
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQ 556
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 178 bits (451), Expect = 8e-47
Identities = 83/764 (10%), Positives = 168/764 (21%), Gaps = 222/764 (29%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA-L 110
++ K I ++ C+ + +L W N D + L
Sbjct: 33 RLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSGSEQRVEVTECSDGLFCKTL 88
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I I D+G Y C + + +Q S I
Sbjct: 89 TIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFI---------------------- 126
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
+ ++ T + + C + N + + G+
Sbjct: 127 -----ASVSDQHGVVYIT------ENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
R + + GF I + +G+ C A + ++V I
Sbjct: 176 RISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI--------- 223
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
V P I ++ + + +
Sbjct: 224 ------------------------YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 351 WLRNGVPIQASNRVS--------TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
W Q V+ + L D G YTC A + L S
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 403 STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ--LNG--- 457
+ + V K + + E+ ++ + R + P ++ NG
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVG--ERVRI------PAKYLGYPPPEIKWYKNGIPL 371
Query: 458 -PTELVEGEGT-IITDTQHPKGLEKIRKLED--------------TEPHKRPEVDDNATK 501
++ I + D + +
Sbjct: 372 ESNHTIKAGHVLTIMEVS----------ERDTGNYTVILTNPISKEKQSHVVSLVVYV-- 419
Query: 502 QRPVFTKP--LQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPL----------- 547
P + + +D+ + G +C + P + W+ +
Sbjct: 420 -PPQIGEKSLISPVDSYQYGTTQTLTCTVY--AIPPPHHIHWYWQLEEECANEPSQAVSV 476
Query: 548 ----------------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585
+ ++ L A +Y C+A N +
Sbjct: 477 TNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKV 536
Query: 586 GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645
G S + P T L
Sbjct: 537 GRGERVISFHVT------------------------------------RGPEIT--LQPD 558
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL--------------------KMGSRF 685
+ E +S C W+ G + K+ +
Sbjct: 559 MQPTEQESVSLWCTA--DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATM 616
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ +++ D G Y+C A +R + ++
Sbjct: 617 FSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 6e-41
Identities = 58/523 (11%), Positives = 115/523 (21%), Gaps = 117/523 (22%)
Query: 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR 304
+ + ++ C A + S +L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL------------------------------- 29
Query: 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV 364
P + + + N R G L W N + V
Sbjct: 30 ---------DLPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEV 76
Query: 365 STMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAAL 423
+ D + L D+G Y C +V + + + +
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 424 QKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR- 482
+N T ++ V I D K I
Sbjct: 137 YITENKNKTVVI----PCLGSISNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPS 189
Query: 483 -KLEDT------------EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI 529
+ + + + + G+ +C
Sbjct: 190 YMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Query: 530 PVGDPTLKVEWFRNEKPLEDSSRI--------TTKHDFGYVAMDLSHVRAEDEGIYICKA 581
+ + W + + ++ + + V D+G+Y C A
Sbjct: 250 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 309
Query: 582 TNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641
++ L + +++ K + +
Sbjct: 310 SSGLMTKKNSTFVRVHEKPFVAFGSGMES------------------------------- 338
Query: 642 LTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKC 701
E G+ + +G P +W+ NG+ L+ H L I +
Sbjct: 339 ---LVEATVGERVRIPAKY--LGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEV 388
Query: 702 VPADSGVYMCKAINRAGEAVSSTS--LKVKSKSDIVSESLQPD 742
D+G Y N + S L V I +SL
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISP 431
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-33
Identities = 43/362 (11%), Positives = 87/362 (24%), Gaps = 58/362 (16%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ E E A P + ++ + ++F I
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
++ S Y C AVN VG E + I + ++ L +
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA 573
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+ T + L + W N +
Sbjct: 574 ----------DRSTFENLTWYKLGPQPLPIHVGE----LPTPVCKNLDTLWKLNATMFSN 619
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
+ +++ +D G Y C A + + +
Sbjct: 620 STNDILI-------MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL---------- 662
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
AP T + + + ++ G+ +
Sbjct: 663 -----------------------ERVAPTITGNLENQTTSIGESIEVSCTAS--GNPPPQ 697
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ W ++ + + + L + ED G YTC+A + LG A + +E
Sbjct: 698 IMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Query: 409 SK 410
Sbjct: 756 GA 757
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 5e-24
Identities = 43/268 (16%), Positives = 74/268 (27%), Gaps = 69/268 (25%)
Query: 49 IYYTVTKPKSIE-----NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH------ 97
I + VT+ I E+ C + T N + W+K G H
Sbjct: 543 ISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFEN--LTWYKLGPQPLPIHVGELPT 600
Query: 98 --------------RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
+ +++ + +D G Y C A + Q
Sbjct: 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ-- 658
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
+ AP T +L+N G+
Sbjct: 659 --------------------------------LTVLERVAPTITGNLENQTTSIGESIEV 686
Query: 204 ECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263
C + ++ WF +N + S + L I + ED G+YTC+A +
Sbjct: 687 SCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSV 742
Query: 264 LGQAVTSGNLLVHSKKSI----QTETQH 287
LG A ++ + +T H
Sbjct: 743 LGCAKVEAFFIIEGAQEKTNLERTHHHH 770
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 2e-10
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 39 QENAKKKKNFIYYTVTKPKSIENLRE----RGH-AHFECKLEPVTDSNLKVEWFKNGRPV 93
++ + P NL G C + ++ WFK+ +
Sbjct: 650 KKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTAS--GNPPPQIMWFKDNETL 707
Query: 94 TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQ 153
L I ED G YTC+A +++G A+V+A G+ +
Sbjct: 708 VEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLER 765
Query: 154 NETGLEQ 160
Sbjct: 766 THHHHHH 772
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 9e-58
Identities = 55/344 (15%), Positives = 103/344 (29%), Gaps = 58/344 (16%)
Query: 68 AHFECKLE---PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYT 124
+CK+ T + W+K+ R +++ + G L I + +D+G Y
Sbjct: 24 VLLKCKVANIKKET----HIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYE 77
Query: 125 CRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184
+ G + + L E + E +
Sbjct: 78 VILKDDRGKDKSRLKLVDEA---------------------------FKELMMEVCKKIA 110
Query: 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALD 244
+ T LK EG + + +KV W HN I+ R + L
Sbjct: 111 LSATDLKIQSTAEGIQLYSFV---TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ 167
Query: 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR 304
I + P D G Y + + +L + E Q + + ++
Sbjct: 168 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK-------- 219
Query: 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV 364
++A V + + E +A + GD +V+WL+N + + +
Sbjct: 220 --------NRARVLGGLPDVVTIQEGKALNLTCN--VWGDPPPEVSWLKNEKALASDDHC 269
Query: 365 S-TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ DSG Y N+ G + T+ V
Sbjct: 270 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 7e-42
Identities = 45/241 (18%), Positives = 75/241 (31%), Gaps = 23/241 (9%)
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
E+ K+ + L+ I + EG + LKV W N +
Sbjct: 96 EAFKELMMEVCKKIALSATDLK-IQSTAEGIQLYSFV---TYYVEDLKVNWSHNGSAIRY 151
Query: 550 SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
S R+ T + + ++ D+G Y+ + + T + + E
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF--- 208
Query: 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
Q L+Q A + L I EG++ + C V GDP
Sbjct: 209 ------QRLKQAAIAEKNRA------RVLGGLPD-VVTIQEGKALNLTCNV--WGDPPPE 253
Query: 670 FEWFVNGVELKMGSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
W N L +++ + I ADSG Y N+ G S ++ V
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 729 K 729
Sbjct: 314 F 314
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 3e-40
Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 33/275 (12%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P F L E+ +C++ + T + W+ + I + + G
Sbjct: 7 GPHFVEYLSW-EVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFKD--GICT 62
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L I + +D+G+Y + G+ + L+ + K + E
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK--------------- 107
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ + ++ AE + + LKV W NG I+ S+
Sbjct: 108 -----------KIALSATDLKIQSTAEGIQLYSF---VTYYVEDLKVNWSHNGSAIRYSD 153
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAA 422
RV T + L P D G Y + + L ++ + Q
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Query: 423 LQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG 457
+ + ++ + + T + G
Sbjct: 214 AAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWG 248
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-39
Identities = 54/320 (16%), Positives = 97/320 (30%), Gaps = 41/320 (12%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQASNRVSTMHD 369
P F + + V + ++ K + W ++ I +
Sbjct: 3 DPFTGPHFVEYLSW-EVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFKD- 58
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
G L +D+G Y ++ G+ + L E+ L ++ + AL +L
Sbjct: 59 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS-ATDL 116
Query: 430 EDTSRFKRKEEEEVEVTQQPSFTVQ--LNG----PTE----LVEGEGT--IITDTQH--- 474
+ S + + V NG ++ V GE I +
Sbjct: 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176
Query: 475 ---------PKG-------LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEE 518
K L E +R + A K R L ++ ++E
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 236
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-GYVAMDLSHVRAEDEGIY 577
GK + +C GDP +V W +NEK L K + ++ V D G Y
Sbjct: 237 GKALNLTCN--VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294
Query: 578 ICKATNALGEAVTTASMKIK 597
N G + ++ +
Sbjct: 295 GLVVKNKYGSETSDFTVSVF 314
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 1e-36
Identities = 32/195 (16%), Positives = 51/195 (26%), Gaps = 20/195 (10%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
KV W NG + R + + L I + P D G Y + + L
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
+ Q + + +A + I+EG+ +
Sbjct: 199 QAYDEAYAEFQ-----------------RLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRAV 261
C D +V W N + S + I DSG Y
Sbjct: 242 LTCN--VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 299
Query: 262 NALGQAVTSGNLLVH 276
N G + + V
Sbjct: 300 NKYGSETSDFTVSVF 314
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 31/249 (12%), Positives = 74/249 (29%), Gaps = 34/249 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + L V N C++ + W+++E+ + + K G
Sbjct: 8 PHFVEYLS--WEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD--GICT 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
+ ++ +D GIY + G+ + + + + + E+ + +
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF------------KELMMEVCKKIA 110
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
+ + Q + V ++ W NG ++
Sbjct: 111 LSATDLKIQ----------------STAEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSD 153
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
R + L I + P D G Y+ + + + L ++ + +E +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Query: 744 WKKIQLKEA 752
+ A
Sbjct: 214 AAIAEKNRA 222
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 3e-57
Identities = 66/346 (19%), Positives = 120/346 (34%), Gaps = 88/346 (25%)
Query: 68 AHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
F+C VT + +K+ W K+ R + G ++ L ++ D+G YTC
Sbjct: 23 GTFKCH---VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79
Query: 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186
A N+ G A L ++E P F
Sbjct: 80 ASNVAGKDSCSAQLG----------------------------------VQE----PPRF 101
Query: 187 TTSLKNCE-IKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
L+ +K+ + +EC++ P +KV W+ + I+ S+F + L
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSP----EIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
++ EDSG YTC A NA G A +S +L V
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------------------------- 191
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
PVF + + + H E G +V+W ++ +++ +
Sbjct: 192 -----------PPVFRKKPHPVETLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKK 238
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
M + +++ D G Y C+A N++G ++ +++
Sbjct: 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 6e-43
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 41/234 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F ++D + G++ F C G +K+ W ++ + +
Sbjct: 6 PFFDLKPVSVD-LALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
+ + V D G Y C A+N G+ +A + ++
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-------------------------- 96
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
E P F + L + + + + Y+C++ G P ++ W+ + E++ S
Sbjct: 97 ----------EPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESS 144
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+F + L++ DSG Y C+A N AG A SSTSLKVK +
Sbjct: 145 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK 198
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 8e-43
Identities = 55/304 (18%), Positives = 109/304 (35%), Gaps = 46/304 (15%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P F + +A ++ F+ G + +K+TW ++ I+
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE---- 430
L D+G YTC A N G+ S+ L V+ ++K++
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF---------IKKLEPSRIVKQ 113
Query: 431 -DTSRFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPKGLEKIRKLEDT 487
+ +R+ E ++ P V + TE+ E ++ + LE + +
Sbjct: 114 DEHTRY------ECKIGGSPEIKVLWYKDE-TEIQESSKFRMSFVESVAVLE----MYNL 162
Query: 488 EPH-----------KRPEVDDNAT---KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD 533
+ + K+ PVF K ++ +G + H C G
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE-TLKGADVHLECE--LQGT 219
Query: 534 PTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
P +V W ++++ L + + ++ + +V + D G Y CKA+N +G S
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279
Query: 594 MKIK 597
+ +K
Sbjct: 280 ITLK 283
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-42
Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 41/230 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
++ P F K L+ V++ ++ + C++ G P +KV W+++E +++SS+
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVES 153
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+++ ++ ED G Y C+A NA G A ++ S+K+K
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----------------------- 190
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
E P+F + E ++G H +C + G P + W + EL+
Sbjct: 191 -------------EPPVFRKKPH-PVETLKGADVHLECELQ--GTPPFQVSWHKDKRELR 234
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G ++ + + ++ I AD G Y CKA N G S+ +K+
Sbjct: 235 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 6e-40
Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 42/228 (18%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P F + ++ G+ F+C +K+ W +N I+ G + T
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L +++ D+G YTC A N G+ S L V
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------------------------ 98
Query: 303 QRTSIIEDTVSQAPVFTQPMRD-IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
P F + + V +++ +E ++ G ++KV W ++ IQ S
Sbjct: 99 -------------PRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQES 143
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
++ L EDSG YTC A N G A +S++L V+
Sbjct: 144 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 50/229 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ K + +++ H +ECK+ KV W+K+ + +FR
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSPEI------KVLWYKDETEIQESSKFRMSFVESVA 155
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L++ + EDSG YTC A N G A +L+
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK--------------------------- 188
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
++E P+F E +G H EC +V W + ++S
Sbjct: 189 -------VKE----PPVFRKKPHPVETLKGADVHLECE--LQGTPPFQVSWHKDKRELRS 235
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
G ++ + ++ I+ D G Y C+A N +G G++ + +
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P F + ++ G+S + C V G ++ W + E++ G + +
Sbjct: 4 APPFFDLKPV-SVDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL + K D+G Y C A N AG+ S L V+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 98
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 6e-55
Identities = 91/698 (13%), Positives = 177/698 (25%), Gaps = 193/698 (27%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + ++ F C+ + W+ N + + + R + + L +
Sbjct: 114 SISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQSLPVSPRLQLSNGNR--TLTL 168
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
+ D+ +Y C N V L + Y
Sbjct: 169 FNVTRNDTASYKCETQNPVSARRSDSVILN-------------------VLYGP------ 203
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
T S N + G+ + C S+ + WF N +S
Sbjct: 204 ------------DAPTISPLNTSYRSGENLNLSCH--AASNPPAQYSWFVNGTFQQSTQE 249
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
L I +SG YTC+A N+ +
Sbjct: 250 -----------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVT------------------ 280
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
I F V + A W
Sbjct: 281 ---------------TITVYAEPPKPFITSNNSNPVEDEDAVALT---CEPEIQNTTYLW 322
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
N + S R+ +D L D G Y C NEL + L V
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380
Query: 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT------QQPSFTVQLNGPTELVEG 464
+ + + + ++ ++ ++G + +
Sbjct: 381 PDDPTISPSYTYYR--------------PGVNLSLSCHAASNPPAQYSWLIDG--NIQQH 424
Query: 465 EGTI-ITDTQHPKGLEKIRKLEDT------------EPHKRPEVDDNATKQRPVFTKPLQ 511
+ I++ +++ + + + P +
Sbjct: 425 TQELFISNIT----------EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN 474
Query: 512 NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
N VE+ F+C P T W+ N + L S R+ + + L +V
Sbjct: 475 NSKPVEDKDAVAFTCE--PEAQNT-TYLWWVNGQSLPVSPRLQLSNGNRT--LTLFNVTR 529
Query: 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631
D Y+C N++ + + L+ + P+
Sbjct: 530 NDARAYVCGIQNSVSANRSD---------PVTLDVLYG-------------------PDT 561
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
P + + G + + C +P+ ++ W +NG+ +
Sbjct: 562 PIISPPDS-------SYLSGANLNLSCHS--ASNPSPQYSWRINGIPQQHTQ-------- 604
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I K P ++G Y C N A +S +
Sbjct: 605 ---VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 7e-47
Identities = 94/714 (13%), Positives = 165/714 (23%), Gaps = 208/714 (29%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA----------------LD 111
P W+K R + L
Sbjct: 17 VLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I + I D+G YT + E +AT Q
Sbjct: 75 IQNIIQNDTGFYTLHVIKSDLVNE-EATGQ------------------------------ 103
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
+S + +++ F C W+ NN + R
Sbjct: 104 ----FRVYPELPKPSISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQSLPVSPR 156
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+N L + D+ Y C N + + +L
Sbjct: 157 LQLSNGNRT--LTLFNVTRNDTASYKCETQNPVSARRSDSVIL----------------- 197
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAP-VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
V P T + + + + + +
Sbjct: 198 -------------------NVLYGPDAPTISPLNTSYRSGENLNLSCH--AASNPPAQYS 236
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
W NG Q++ L +SG+YTC+A N
Sbjct: 237 WFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGL--------NRT 277
Query: 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT------------VQLNGP 458
+ E I + ++E+ V +T +P + ++
Sbjct: 278 TVTTITVYAEPPKPFITSNNSNPV---EDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPR 334
Query: 459 TELVEGEGT-IITDTQHPKGLEKIRKLEDT------------EPHKRPEVDDNATKQRPV 505
+L T + D H P V N
Sbjct: 335 LQLSNDNRTLTLLSVT----------RNDVGPYECGIQNELSVDHSDP-VILNVLYGPDD 383
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
T G N SC +P + W + + + +
Sbjct: 384 PTISPSYTY-YRPGVNLSLSCH--AASNPPAQYSWLIDGNIQQHTQELF----------- 429
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPM 625
+S++ ++ G+Y C+A N+ T I A
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA------------------------- 464
Query: 626 PQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF 685
E P + + + + + + C T + W+VNG L + R
Sbjct: 465 --------ELPKPSISSNNSKPVEDKDAVAFTCEP--EAQNT-TYLWWVNGQSLPVSPRL 513
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSES 738
+ + TL + D+ Y+C N S +L V D S
Sbjct: 514 QLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 8e-37
Identities = 77/586 (13%), Positives = 132/586 (22%), Gaps = 160/586 (27%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWF-----HNNVPIKSGSRFTETNNFGFVA------ 242
+ EG+ + + W+ N I T+ G
Sbjct: 10 NVAEGKEVLLLVH--NLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 243 -----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
L I + D+G YT + +
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNE----------------------------- 98
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
+ T V + A F W N
Sbjct: 99 -----EATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQS 150
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDT 417
+ S R+ + L D+ +Y C N + + S L
Sbjct: 151 LPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDS-------VIL---- 197
Query: 418 QNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEG----------EGT 467
N+ + + + GT
Sbjct: 198 ----------NVLYGPDAPTISPLNTSYRSGENLNLSCH-----AASNPPAQYSWFVNGT 242
Query: 468 IITDTQHPKGLEKIRKLED------------TEPHKRPEVDDNATKQRPVFTKPLQNIDA 515
TQ + I + T ++ + P N +
Sbjct: 243 FQQSTQELF-IPNITV-NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP 300
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
VE+ +C P T W+ N + L S R+ +D + L V D G
Sbjct: 301 VEDEDAVALTC--EPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNRTLT--LLSVTRNDVG 355
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C N L + + L P P P Y
Sbjct: 356 PYECGIQNELSVDHSDPV--------------------ILNVLYGPDDP-TISPSYTY-- 392
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
G + C +P ++ W ++G +
Sbjct: 393 ------------YRPGVNLSLSCHAA--SNPPAQYSWLIDGNIQQHTQ-----------E 427
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
L I+ +SG+Y C+A N A +T + +++ S+
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 45/358 (12%), Positives = 76/358 (21%), Gaps = 102/358 (28%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
T S R + C + + W +G L
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAAS--NPPAQYSWLIDGNIQQHTQE-----------L 428
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + ++SG YTC+A N
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKT----------------------------- 459
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
I + +S + +++ F C W+ N +
Sbjct: 460 -----ITVSAELPKPSISSNNSKPVEDKDAVAFTCE---PEAQNTTYLWWVNGQSLPVSP 511
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
R +N L + D+ Y C N++ + L
Sbjct: 512 RLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL---------------- 553
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAP-VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV 349
V P D + + +
Sbjct: 554 --------------------DVLYGPDTPIISPPDSSYLSGANLNLSCH--SASNPSPQY 591
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+W NG+P Q + L P ++GTY C N S +
Sbjct: 592 SWRINGIPQQHTQV-----------LFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 8e-26
Identities = 63/452 (13%), Positives = 114/452 (25%), Gaps = 103/452 (22%)
Query: 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA--------- 374
+VAE + + +W + + +
Sbjct: 8 PFNVAEGKEVLLLVH--NLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65
Query: 375 -------LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQ 427
L + D+G YT + V +A+ Q E I
Sbjct: 66 IIYPNASLLIQNIIQNDTGFYTLHVIKSDL---------VNEEATGQFRVYPELPKPSIS 116
Query: 428 NLEDTSRFKRKEEEEVEVT-----QQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR 482
+ ++++ V T Q ++ +N L +++ L +
Sbjct: 117 SNNSKPV---EDKDAVAFTCEPETQDATYLWWVNN-QSLPVSPRLQLSNGNRTLTLFNVT 172
Query: 483 KLEDT------------EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIP 530
+ DT V N T N G+N + SC
Sbjct: 173 R-NDTASYKCETQNPVSARRSDS-VILNVLYGPDAPTISPLNTS-YRSGENLNLSCH--A 227
Query: 531 VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590
+P + WF N + + + + ++ + G Y C+A N+
Sbjct: 228 ASNPPAQYSWFVNGTFQQSTQELF-----------IPNITVNNSGSYTCQAHNSDTGLNR 276
Query: 591 TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650
T I +P P ++ + +
Sbjct: 277 TTV-------------------TTITVYAEPPKPFITSNN--------------SNPVED 303
Query: 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYM 710
+ C T + W+VN L + R + +D TL + D G Y
Sbjct: 304 EDAVALTCEPE--IQNT-TYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYE 358
Query: 711 CKAINRAGEAVSST-SLKVKSKSDIVSESLQP 741
C N S L V D + S
Sbjct: 359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSY 390
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
T + + + C ++ + + W NG P L
Sbjct: 561 TPIISPPDSSYLSGANLNLSCHSA--SNPSPQYSWRINGIPQQHTQV-----------LF 607
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSA 146
I P ++GTY C NL SA
Sbjct: 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSITVSA 642
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 3e-53
Identities = 55/359 (15%), Positives = 102/359 (28%), Gaps = 56/359 (15%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
+ + +FEC + W K+ R +
Sbjct: 7 KEVVVNVDDDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D +D G Y+C + G A YL D+ + +R
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIAS--------------------------SYLIDEEELKRL 97
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF- 232
+ + S EI E + F + +S N KV + N I G ++
Sbjct: 98 LALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYK 156
Query: 233 -TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
N G + + + + ED G YT + + ++ L+ K +Q E +
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE----- 211
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVT 350
E Q P F + + V + ++ K +
Sbjct: 212 -------------FQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKV--ANIKKETHIV 255
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
W ++ I + L +D+G Y ++ G+ + L E+
Sbjct: 256 WYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 8e-38
Identities = 43/318 (13%), Positives = 97/318 (30%), Gaps = 44/318 (13%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P + + ++ + +FE K + +W ++ V + S R+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
+ FK +D G Y+C + G A + E K L L +++ +++
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 435 FK----RKEEEEVEVTQQPSFTVQLNGPTELVEGEGT-------------IITDTQ---- 473
+ R + +++ N E+ EG + Q
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNE-KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE 178
Query: 474 --------------HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEG 519
H + + + + + KQ P F + L V
Sbjct: 179 GTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGE 236
Query: 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579
N C+ + + W+++E+ + + K + ++ +D GIY
Sbjct: 237 CNVLLKCK-VANIKKETHIVWYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEV 293
Query: 580 KATNALGEAVTTASMKIK 597
+ G+ + + +
Sbjct: 294 ILKDDRGKDKSRLKLVDE 311
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 5e-37
Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 32/237 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + + N+D + + +F C P + W ++ EDS R+ +
Sbjct: 4 PFTKEVVVNVD-DDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
M + +D GIY C T+ G A + + + K L L E + P
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALS----------HEHKFPTV 109
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
P+ E EI+E + + + + N E+ G
Sbjct: 110 PVKSELA---------------VEILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGP 153
Query: 684 RF--HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
++ H+ + G + + + K D G Y + + S+ L + E+
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 9e-37
Identities = 44/258 (17%), Positives = 94/258 (36%), Gaps = 27/258 (10%)
Query: 475 PKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534
G+ +++ E + + K V K ++ +E+G+ +
Sbjct: 80 TDGIASSYLIDEEELKRLLALSHE-HKFPTVPVKSELAVEILEKGQVRFWMQ--AEKLSG 136
Query: 535 TLKVEWFRNEKPLEDSSR--ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
KV + NEK + + + + + G + M + ++ EDEG Y + + +T
Sbjct: 137 NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 196
Query: 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ 652
+ +L++ A QE R+ + P F + L+ E+
Sbjct: 197 VLVGDVFK----------------KLQKEAEFQRQEWIRK-QGPHFVEYLS--WEVTGEC 237
Query: 653 SAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712
+ C+V + T W+ + E+ + + + TL IT+ D+G+Y
Sbjct: 238 NVLLKCKVANIKKET-HIVWYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEVI 294
Query: 713 AINRAGEAVSSTSLKVKS 730
+ G+ S L ++
Sbjct: 295 LKDDRGKDKSRLKLVDEA 312
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 35/277 (12%), Positives = 74/277 (26%), Gaps = 34/277 (12%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P + N + +FEC + W + V + R +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
+ +D G+Y+C + G A + K+ +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLA-------------------- 99
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ V + + + E F + KV ++ N I
Sbjct: 100 -----LSHEHKFPTVPVKSELAVEILEKGQVRFWMQ-AEKLSGNAKVNYIFNEKEIFEGP 153
Query: 363 R--VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNE 420
+ + + G + + + ED GTYT + + ++ L + LQ + + +
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQ 213
Query: 421 AALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG 457
+ F EV ++
Sbjct: 214 RQEWIRKQ---GPHFVEYLSWEVTGECNVLLKCKVAN 247
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 6e-17
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P +++ + S +++C P F W + V + R V+
Sbjct: 2 IDPFTKEVVVNVDD-DGVISLNFECDK---MTPKSEFSWSKDYVSTEDSPRLEVESKGNK 57
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ D G+Y C + G A S + + K
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 3e-46
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 42/232 (18%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSR--FTETN 236
TTQAP FT L++ + EG A FE +S +V WF + I + + +
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAH---ISGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
+ G L I +SG Y+ +A N GQA ++ LLV ++ +
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA---------------- 102
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356
P F Q ++ + V + + R G V + R+G
Sbjct: 103 ------------------PPNFVQRLQSMTVRQGSQVRLQVR--VTGIPTPVVKFYRDGA 142
Query: 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
IQ+S + +L YPEDSGTY+ A N +G A +++ L V+
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-43
Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
T Q P FT+PLQ++ V EG A F + G P +V WFR+ + + S+ + F
Sbjct: 2 TTQAPTFTQPLQSVV-VLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 560 --GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
G + + V + G Y KATN G+A +TA + +K +
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET----------------- 101
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
P F Q L + +G RV G PT +++ +G
Sbjct: 102 ----------------APPNFVQRLQSM-TVRQGSQVRLQVRV--TGIPTPVVKFYRDGA 142
Query: 678 ELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
E++ F + + +L I + P DSG Y A N G A S+ L V+
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-37
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 52/231 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFG 106
+S+ + E A FE + P +V WF++G+ ++ + G
Sbjct: 9 TQPLQSVV-VLEGSTATFEAHISGFPVP------EVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
L I +SG Y+ +A N G A A L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV------------------------ 97
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVP 225
+ T P F L++ +++G + + R V+ T V+++ +
Sbjct: 98 -----------KAETAPPNFVQRLQSMTVRQGSQVRLQVR---VTGIPTPVVKFYRDGAE 143
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
I+S F + +L I + PEDSG Y+ A N++G+A ++ LLV
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-20
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR--VSTMHD 369
+QAP FTQP++ + V E A FEA + G +V+W R+G I S V
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISFS 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G L +SG Y+ +A N G+A +++ L V+++ +
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 4e-19
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR--FHVQHDF 691
+ P FTQ L ++EG +A ++ + G P WF +G + + +
Sbjct: 4 QAPTFTQPLQSV-VVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
G L I A+SG Y KA N +G+A S+ L VK+++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAET 101
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 7e-45
Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 23/227 (10%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ L+ I + EG + LKV W N + S R+ T +
Sbjct: 4 IALSATDLK-IQSTAEG--IQLYSF-VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI 59
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ ++ D+G Y+ + + T + + + E + Q L+Q A
Sbjct: 60 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA---------YDEAYAEFQRLKQAA 110
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ L I EG++ + C V GDP W N L
Sbjct: 111 IAEKNRA------RVLGGLPD-VVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQT 161
Query: 683 SRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+++ + I ADSG Y N+ G S ++ V
Sbjct: 162 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 9e-43
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 22/226 (9%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ T LK EG + + +KV W HN I+ R + L
Sbjct: 5 ALSATDLKIQSTAEGIQ--LYSF-VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
I + P D G Y + + +L + E Q + + ++
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK------- 114
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
++A V + + E +A + + GD +V+WL+N + ++
Sbjct: 115 ---------NRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDH 163
Query: 364 VSTMHDFGYVA-LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ + G A DSG Y N+ G + T+ V
Sbjct: 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 33/211 (15%), Positives = 53/211 (25%), Gaps = 23/211 (10%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
+ +LKV W NG + R + + L I + P D G Y
Sbjct: 20 IQLYSFV-TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 78
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
+ + L + Q + + +A +
Sbjct: 79 FDGKTGHQKTVDLSGQAYDEAYAEFQ-----------------RLKQAAIAEKNRARVLG 121
Query: 188 TSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNF-GFVALDI 245
I+EG+ + C V D +V W N + I
Sbjct: 122 GLPDVVTIQEGKALNLTCN---VWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
DSG Y N G + + V
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 6e-20
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 485 EDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE 544
E +R + A K R L ++ ++EGK + +C + GDP +V W +NE
Sbjct: 98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNE 155
Query: 545 KPLEDSSRITTKHDFGYVA-MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
K L + K + G A ++ V D G Y N G + ++ +
Sbjct: 156 KALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 4e-19
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 21/150 (14%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ ++ AE + + LKV W NG I+ S+RV T + L
Sbjct: 5 ALSATDLKIQSTAEGIQLYSF---VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRF 435
P D G Y + + L ++ E + F
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD------------------EAYAEF 103
Query: 436 KRKEEEEVEVTQQPSFTVQLNGPTELVEGE 465
+R ++ + + L + EG+
Sbjct: 104 QRLKQAAIAEKNRARVLGGLPDVVTIQEGK 133
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 2e-18
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 644 GTSEIMEGQSAHYDCRV--------VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
G+S + V ++ W NG ++ R +
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
L I + P D G Y+ + + + L ++ + +E +
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 108
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 3e-44
Identities = 73/445 (16%), Positives = 129/445 (28%), Gaps = 79/445 (17%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
V + PV ++ EN E +K +W ++G + +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGND---QGVKYSWKKDGKSYNWQEHNAALR 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVESKASLQLDTQNEAALQ--- 424
+L F D G Y C A G A + + + T + ++
Sbjct: 59 KDEG-SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 425 --------------KIQ---NLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEG-EG 466
I L + + +T P + T+
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 467 TIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSC 526
+ ++ E++ +E K D++ K PV +++ + G C
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYE--IKGVTKDNSGYKGEPVPQYVSKDM-MAKAGDVTMIYC 234
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584
+ +P +F+N K + + RIT + + EDEG+Y C+ N
Sbjct: 235 --MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG 292
Query: 585 LGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLT 643
+G+ + + + P + Q
Sbjct: 293 VGKPQKHSLKLTV------------------------------------VSAPKYEQKPE 316
Query: 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP 703
+ +GQ C+V G P W N L G R V L I
Sbjct: 317 KVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLS-GGRATVTDS----GLVIKGVKN 369
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
D G Y C+A N G+ T ++V
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 3e-35
Identities = 57/368 (15%), Positives = 90/368 (24%), Gaps = 79/368 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+P + RE EC +E D +K W K+G+ + +L
Sbjct: 10 KDQPAEVL-FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG-SLVF 66
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
+ D G Y C A G A +
Sbjct: 67 LRPQASDEGHYQCFAETPAGVASSRV---------------------------------- 92
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS---- 228
I T EG+ +C +P + + W
Sbjct: 93 ---ISFRKTYLIASPAKTHEKTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADV 148
Query: 229 ---GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
R T + + + D Y C A NA
Sbjct: 149 TDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEY----------- 197
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345
+ + PV +D+ + +
Sbjct: 198 ---------------EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYC--MYGSNP 240
Query: 346 KLKVTWLRNGVPIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
+ +NG + + R++ + L FK T PED G YTC N +G+ S
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 300
Query: 404 -TLFVESK 410
L V S
Sbjct: 301 LKLTVVSA 308
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 63/449 (14%), Positives = 112/449 (24%), Gaps = 87/449 (19%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
+ P+ +E EC I +D +K W +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECI-IEGNDQGVKYSWKKDGKSYNWQEH-NAALRK 59
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
+L ++ D G Y C A G A SR+
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVAS-----------------------SRVISF- 95
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ + E + + +P K +TW +
Sbjct: 96 ------------RKTYLIASPAKTHEKTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGA 142
Query: 359 QASN-------RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
+ R++ D D Y C A N + E K
Sbjct: 143 DPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLV-EYEIKG 201
Query: 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG-PT----------E 460
+ ++ + +D + P +
Sbjct: 202 VTKDNSGYKGEPVPQYVSKDMM---------AKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252
Query: 461 LVEGEGTIITDTQHPKGLE-KIR--KLEDT-----EPHKRPEVDDNATKQRPVFTKP--- 509
+ IT G + ED E + + V + P
Sbjct: 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYE 312
Query: 510 --LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
+ + V++G++ C+ G P V W N KPL T + +
Sbjct: 313 QKPEKVIVVKQGQDVTIPCK--VTGLPAPNVVWSHNAKPLSGGRATVTDS-----GLVIK 365
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKI 596
V+ D+G Y C+ATN G+ +++
Sbjct: 366 GVKNGDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 7e-34
Identities = 74/366 (20%), Positives = 94/366 (25%), Gaps = 86/366 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-------GHRFRPIHDF 105
K E +C L P + W K R D
Sbjct: 104 PAKTHEKT-PIEGRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG 161
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ D Y C A N EV E +
Sbjct: 162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE-----------------YEIKGVTK 204
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNV 224
D S Y+ P+ K+ K G C N M +F N
Sbjct: 205 DNSGYKG----------EPVPQYVSKDMMAKAGDVTMIYC---MYGSNPMGYPNYFKNGK 251
Query: 225 PIKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
+ R T N L LPED GVYTC N +G+ L
Sbjct: 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL-------- 303
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ-PMRDIHVAENQAAHFEARLIP 341
TV AP + Q P + I V + Q +
Sbjct: 304 ----------------------------TVVSAPKYEQKPEKVIVVKQGQDVTIPCK--V 333
Query: 342 VGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
G V W N P+ T+ D G L K D G Y CRA NE G+
Sbjct: 334 TGLPAPNVVWSHNAKPLSGGRA--TVTDSG---LVIKGVKNGDKGYYGCRATNEHGDKYF 388
Query: 402 SSTLFV 407
+ + V
Sbjct: 389 ETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-25
Identities = 37/238 (15%), Positives = 64/238 (26%), Gaps = 40/238 (16%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-------EDSSRITTK 556
EG+ C +P P + W + + RIT
Sbjct: 101 IASPAKTHEKT-PIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQ 616
D ++ D Y+C A NA + + +++
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD-------EEVVLVEYEIK----------- 200
Query: 617 ELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG 676
+ ++ +P+ + G C +P +F NG
Sbjct: 201 -------GVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYCMYG--SNPMGYPNYFKNG 250
Query: 677 VELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSK 731
++ R + L +P D GVY C+ N G+ S L V S
Sbjct: 251 KDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 2e-22
Identities = 48/199 (24%), Positives = 65/199 (32%), Gaps = 53/199 (26%)
Query: 84 VEWFKNGRPV--TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATL 140
+FKNG+ V R + L T+PED G YTC N VG + L
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Query: 141 QCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNC-EIKEGQ 199
T AP + + +K+GQ
Sbjct: 304 --------------------------------------TVVSAPKYEQKPEKVIVVKQGQ 325
Query: 200 RAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
C++ +P V W HN P+ SG R T T++ L I D G Y
Sbjct: 326 DVTIPCKVTGLP----APNVVWSHNAKPL-SGGRATVTDS----GLVIKGVKNGDKGYYG 376
Query: 258 CRAVNALGQAVTSGNLLVH 276
CRA N G + V+
Sbjct: 377 CRATNEHGDKYFETLVQVN 395
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 9e-21
Identities = 39/252 (15%), Positives = 62/252 (24%), Gaps = 54/252 (21%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLE--DSSRITTKH 557
+ PV + E C G+ +K W ++ K + + K
Sbjct: 4 DKYPVLKDQPAEVL-FRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ V +A DEG Y C A G A + +
Sbjct: 61 EGSLV---FLRPQASDEGHYQCFAETPAGVASS-------RVISFRKT------------ 98
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
+ +EG+ DC +P P W
Sbjct: 99 ----------------YLIASPAKTHEKT-PIEGRPFQLDCV-LPNAYPKPLITWKKRLS 140
Query: 678 ELKM-------GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVK 729
R D +TK +D Y+C A N A + V ++K
Sbjct: 141 GADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIK 200
Query: 730 SKSDIVSESLQP 741
+ S
Sbjct: 201 GVTKDNSGYKGE 212
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 7e-43
Identities = 75/456 (16%), Positives = 126/456 (27%), Gaps = 109/456 (23%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQAS--NRVSTM 367
++ F D D + + W ++G+ + +R +
Sbjct: 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCS--AESDRGVPVIKWKKDGLILALGMDDRKQQL 74
Query: 368 HDFGYV--ALNFKYTYPEDSGTYTCRAVNELGEAVTSST--LFVESKASLQLDTQNEAAL 423
+ + + + D G Y C A ++ S T + V T++ A
Sbjct: 75 PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAF 134
Query: 424 QKIQNLEDTSRFK-------------RKEEEEVEVTQQ-PSFTVQLNGPTELVEGEGTII 469
DT K +K ++++ V +G L I
Sbjct: 135 M-----GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--AL------QI 181
Query: 470 TDTQHPKGLEKIRKLEDT------------EPHKRPE----VDDNATKQRPVFTKPLQNI 513
+ Q D+ + D ++ F + N+
Sbjct: 182 SRLQ----------PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAED 573
EGK+A C G P W R E+ ++ S+ + + +S+V +D
Sbjct: 232 -IAIEGKDAVLECC--VSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDD 286
Query: 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY 633
G Y C T +A + +
Sbjct: 287 SGTYTCVVTYKNENISASAELTVL------------------------------------ 310
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P F + E ++C V G P W NG + F +
Sbjct: 311 VPPWFLNHPSNLY-AYESMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIVGG-S- 365
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I V +D G Y C A N AG A SS L V
Sbjct: 366 -NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 3e-42
Identities = 68/363 (18%), Positives = 99/363 (27%), Gaps = 88/363 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+++ +SI +C++ P+ + W KN + + + AL
Sbjct: 125 LSQTESIT-AFMGDTVLLKCEVIGDPM----PTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
I P DSG Y C A N A ++ G+
Sbjct: 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL--------------------- 218
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS 228
+ F N EG+ A EC VS W I+
Sbjct: 219 -----------HRQLYFLQRPSNVIAIEGKDAVLECC---VSGYPPPSFTWLRGEEVIQL 264
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
S+ L I +DSG YTC S L V
Sbjct: 265 RSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV----------- 311
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
P F +++ E+ FE G
Sbjct: 312 --------------------------PPWFLNHPSNLYAYESMDIEFECA--VSGKPVPT 343
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W++NG + S+ + L D G Y C A NE G A +S+ L V
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGG-S--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Query: 409 SKA 411
A
Sbjct: 401 KPA 403
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-41
Identities = 67/444 (15%), Positives = 115/444 (25%), Gaps = 85/444 (19%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNN 237
++ F + + G C ++W + + + G + +
Sbjct: 20 RSLHFVSEPSDAVTMRGGNVLLNCS-AESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
+ + D G+Y C A ++ S V
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV---------------------- 116
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
V+ F I + +GD + W +N
Sbjct: 117 -------------MVAGPLRFLSQTESITAFMGDTVLLKCE--VIGDPMPTIHWQKNQQD 161
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLD 416
+ S + AL P DSG Y C A N + + + S L
Sbjct: 162 LNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ 221
Query: 417 TQNEAALQKIQNLEDTS-RFKRKEEEEVEVTQQPSFTV---------QLNGPTELVEGEG 466
+ +E E V+ P + QL + G
Sbjct: 222 LYFLQRPSNVIAIEGKDAVL------ECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS 275
Query: 467 T-IITDTQHPKGLEKIRKLEDT-----EPH-KRPEVDDNAT---KQRPVFTKPLQNIDAV 516
+I++ +D+ K + +A P F N+
Sbjct: 276 NLLISNVT----------DDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY-A 324
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
E + F C G P V W +N + S + + V DEG
Sbjct: 325 YESMDIEFECA--VSGKPVPTVNWMKNGDVVIPSDYFQIVGG-S--NLRILGVVKSDEGF 379
Query: 577 YICKATNALGEAVTTASMKIKTKA 600
Y C A N G A ++A + + A
Sbjct: 380 YQCVAENEAGNAQSSAQLIVPKPA 403
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-34
Identities = 62/367 (16%), Positives = 96/367 (26%), Gaps = 90/367 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR----PIHDFGYV 108
V++P G+ C E ++W K+G + +G R P
Sbjct: 25 VSEPSDAV-TMRGGNVLLNCSAESDRGV-PVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVG--FAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
+ D G Y C A A + +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM-------------------VAGP-- 121
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI 226
F + ++ G +C + D + W N +
Sbjct: 122 -----------------LRFLSQTESITAFMGDTVLLKCE--VIGDPMPTIHWQKNQQDL 162
Query: 227 K---SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQ 282
SR + G AL I + P DSGVY C A N + + S +
Sbjct: 163 NPIPGDSRVVVLPS-G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH 219
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV 342
+ F Q ++ E + A E
Sbjct: 220 -------------------------------RQLYFLQRPSNVIAIEGKDAVLECC--VS 246
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
G TWLR IQ ++ ++ L +DSGTYTC + S
Sbjct: 247 GYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISAS 304
Query: 403 STLFVES 409
+ L V
Sbjct: 305 AELTVLV 311
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 44/237 (18%), Positives = 78/237 (32%), Gaps = 43/237 (18%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE---DSSRITTKHDFG 560
F ++I G C +GDP + W +N++ L SR+ G
Sbjct: 122 LRFLSQTESI-TAFMGDTVLLKCE--VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS-G 177
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
A+ +S ++ D G+Y C A N + +A +++
Sbjct: 178 --ALQISRLQPGDSGVYRCSARNPAST-------RTGNEAEVRI---------------- 212
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ + F Q + +EG+ A +C V G P F W ++
Sbjct: 213 ------LSDPGLHRQLYFLQRPS-NVIAIEGKDAVLECCVS--GYPPPSFTWLRGEEVIQ 263
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ S+ + L I+ DSG Y C + +S L V ++
Sbjct: 264 LRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH 318
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 1e-21
Identities = 41/242 (16%), Positives = 70/242 (28%), Gaps = 50/242 (20%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTK 556
++ F + G N +C ++W ++ L +
Sbjct: 19 RRSLHFVSEPSDAV-TMRGGNVLLNCS-AESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQ 616
+ S DEG+Y C+A+ ++ + + K+
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV-------------------- 116
Query: 617 ELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG 676
F + G + C V +GDP W N
Sbjct: 117 --------------MVAGPLRFLSQTESIT-AFMGDTVLLKCEV--IGDPMPTIHWQKNQ 159
Query: 677 VELKM---GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKS 732
+L SR V G L I++ P DSGVY C A N A + +++ S
Sbjct: 160 QDLNPIPGDSRVVVLPS-G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216
Query: 733 DI 734
+
Sbjct: 217 GL 218
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG- 692
F + M G + +C +W +G+ L +G Q
Sbjct: 20 RSLHFVSEPSDA-VTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLPNG 77
Query: 693 ---YVTLDITKCVPADSGVYMCKA-INRAGEAVSST-SLKVKSKSDIVSE 737
+ ++ D G+Y C+A + +G +S T + V +S+
Sbjct: 78 SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ 127
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-42
Identities = 68/365 (18%), Positives = 106/365 (29%), Gaps = 89/365 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ +PK G A F C+ P +V W K G+ V D A+
Sbjct: 10 IKEPKDQI-GVSGGVASFVCQATGDPK----PRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 111 DIIDTI--PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
I + P D Y C A N VG V A L +L Q +G
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLT------VLREDQLPSG----------- 107
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPI 226
P + ++ + A C P + + WF + +P+
Sbjct: 108 --------------FPNIDMGPQLKVVERTRTATMLCAASGNPDPE----ITWFKDFLPV 149
Query: 227 KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSKKSIQTET 285
+ AL I D G Y C A N+ G +S NL V +
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV----- 204
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345
AP F+ + + VG
Sbjct: 205 -----------------------------APRFSILPMSHEIMPGGNVNITCV--AVGSP 233
Query: 346 KLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
V W++ + + + + + T +DS YTC A++ LG + +
Sbjct: 234 MPYVKWMQGAEDLTPEDDM-PVGR-----NVLELTDVKDSANYTCVAMSSLGVIEAVAQI 287
Query: 406 FVESK 410
V+S
Sbjct: 288 TVKSL 292
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-33
Identities = 58/324 (17%), Positives = 98/324 (30%), Gaps = 46/324 (14%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+T + P F + +D A F + GD K +VTW + G + + + D
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 370 FGYVALN--FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQ 427
A+ P D Y C A N +GE + L V + D
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE-----DQLPSGFPNIDM 113
Query: 428 NLEDTSRFKRKEEEEV----EVTQQPSFTV--QLNGPTELVEGEGTIITDTQHPKGLEKI 481
+ + + P + + V+ + Q G +I
Sbjct: 114 GPQLKVV---ERTRTATMLCAASGNPDPEITWFKDF--LPVDPSASNGRIKQLRSGALQI 168
Query: 482 R--KLEDT---------EPHKRPEVDDNAT----KQRPVFTKPLQNIDAVEEGKNAHFSC 526
+ D R N P F+ + + + G N + +C
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE-IMPGGNVNITC 227
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586
VG P V+W + + L + + L +D Y C A ++LG
Sbjct: 228 V--AVGSPMPYVKWMQGAEDLTPEDDMPVGRNV------LELTDVKDSANYTCVAMSSLG 279
Query: 587 EAVTTASMKIK--TKAGLQLETQH 608
A + +K KAG + H
Sbjct: 280 VIEAVAQITVKSLPKAGTKHHHHH 303
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 7e-32
Identities = 48/238 (20%), Positives = 74/238 (31%), Gaps = 37/238 (15%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
ET + P F K+ G A F C+ D +V W + S T +
Sbjct: 1 ETGEEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 238 FGFVA-LDIMQ-CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
A L I P D VY C A N++G+ L V +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE----------------- 101
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
+ S P + V + A G+ ++TW ++
Sbjct: 102 -------------DQLPSGFPNIDMGPQLKVVERTRTATMLCA--ASGNPDPEITWFKDF 146
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKAS 412
+P+ S + AL + + D G Y C A N G +S L+V +
Sbjct: 147 LPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV 204
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 44/244 (18%)
Query: 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI 553
+D P Q VE + A C G+P ++ WF++ P++ S+
Sbjct: 99 LREDQLPSGFPNIDMGPQLK-VVERTRTATMLCA--ASGNPDPEITWFKDFLPVDPSASN 155
Query: 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLK 613
A+ + D+G Y C ATN+ G ++ A L +
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP-------ANLYV--------- 199
Query: 614 KIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF 673
+ P F+ L + EIM G + + C V G P +W
Sbjct: 200 --RVQNVA--------------PRFSILPM-SHEIMPGGNVNITCVAV--GSPMPYVKWM 240
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
+L V + DS Y C A++ G + + VKS
Sbjct: 241 QGAEDLTPEDDMPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPK 294
Query: 734 IVSE 737
++
Sbjct: 295 AGTK 298
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 48/232 (20%), Positives = 76/232 (32%), Gaps = 38/232 (16%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
++ P F K ++ G A F C+ GDP +V W + K + T + D
Sbjct: 4 EEPPRFIKEPKDQI-GVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 561 YVA-MDLSHVR-AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
A + + +R DE +Y C A N++GE A + +
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR-------------------- 100
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
E + P + ++A C G+P WF + +
Sbjct: 101 ---------EDQLPSGFPNIDMGPQLK-VVERTRTATMLCAAS--GNPDPEITWFKDFLP 148
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
+ + L I D G Y C A N AG SS +L V+
Sbjct: 149 VDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 45/240 (18%), Positives = 65/240 (27%), Gaps = 55/240 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
P+ + A C +P ++ WFK+ PV I
Sbjct: 112 DMGPQLKV-VERTRTATMLCAASGNPDP------EITWFKDFLPVDPSASNGRIKQLRSG 164
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
AL I + D G Y C A N G A L
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANL--------------------------- 197
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
Y+ AP F+ + EI G + C V V+W +
Sbjct: 198 -------YVRVQNV-APRFSILPMSHEIMPGGNVNITCV--AVGSPMPYVKWMQGAEDLT 247
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
+ +DS YTC A+++LG + V S T+ H
Sbjct: 248 PEDDMPVGR------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHH 301
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E P F + + G A + C+ GDP R W G ++ ++ D
Sbjct: 5 EPPRFIKEPK-DQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 694 V-TLDITK-CVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKE 751
L I P D VY C A N GE L V + + S P+ QLK
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF--PNIDMGPQLKV 119
Query: 752 AEMNKP 757
E +
Sbjct: 120 VERTRT 125
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
P S E + G+ + C V V+W + +T P+ +
Sbjct: 209 SILPMSHE-IMPGGNVNITCV--AVGSPMPYVKWMQGAEDLTPEDDM-PVGR-----NVL 259
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNE 155
T +DS YTC A++ +G E A + + T +
Sbjct: 260 ELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 5e-42
Identities = 76/453 (16%), Positives = 131/453 (28%), Gaps = 88/453 (19%)
Query: 308 IEDTVSQAPVFT-QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN--RV 364
I++ ++Q P T Q +D V E G+ W RN + RV
Sbjct: 9 IQNELTQPPTITKQSAKDHIVDPRDNILIECE--AKGNPAPSFHWTRNSRFFNIAKDPRV 66
Query: 365 STMHDFG--YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAA 422
S G + E G Y C A N+ G A+++ LQ+
Sbjct: 67 SMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-------IRLQVSKSPLWP 119
Query: 423 LQKIQNLE----DTSRFK--------------RKEEEEVEVTQQPSFTVQLNG-----PT 459
+ + + + E +TQ + NG
Sbjct: 120 KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSNV 178
Query: 460 ELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDA--VE 517
L + + + + +K + ++ P F P + V
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQK---NPFTLKVLTTRGVAERTPSFMYPQGTASSQMVL 235
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
G + C I G PT + W++ L + A+ +++V ED G Y
Sbjct: 236 RGMDLLLEC--IASGVPTPDIAWYKKGGDLPSDKAKFENFN---KALRITNVSEEDSGEY 290
Query: 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI 637
C A+N +G T S+++ P
Sbjct: 291 FCLASNKMGSIRHTISVRV------------------------------------KAAPY 314
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD 697
+ + G+ CR G+P +W VNG L+ + G T+
Sbjct: 315 WLDEPKNLI-LAPGEDGRLVCRAN--GNPKPTVQWMVNGEPLQSAPPNPNREVAGD-TII 370
Query: 698 ITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ VY C N G +++ + V
Sbjct: 371 FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-34
Identities = 71/450 (15%), Positives = 131/450 (29%), Gaps = 84/450 (18%)
Query: 175 YIEETTTQAPIFTT-SLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK--SG 229
I+ TQ P T S K+ + EC P W N+
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNP----APSFHWTRNSRFFNIAKD 63
Query: 230 SRFTETNNFG--FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
R + G + E G Y C A N G A+++ L
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL------------- 110
Query: 288 GESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSK 346
VS++P++ + + + V E + P G
Sbjct: 111 -----------------------QVSKSPLWPKENLDPVVVQEGAPLTLQCN-PPPGLPS 146
Query: 347 LKVTWLRNGVPIQASN-RVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSST 404
+ W+ + + + RVS H+ G L F +D Y+C A +
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKN 203
Query: 405 LFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEV----TQQPSFTVQLNGPTE 460
F + + + + Q + R + +E P G
Sbjct: 204 PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG--- 260
Query: 461 LVEGEGTIITDTQHPKGLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVF 506
G + +D + K ++ + K + + K P +
Sbjct: 261 -----GDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYW 315
Query: 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL 566
+N+ + G++ CR G+P V+W N +PL+ + + G +
Sbjct: 316 LDEPKNL-ILAPGEDGRLVCR--ANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT-IIF 371
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ +Y C +N G + A + +
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 56/361 (15%), Positives = 97/361 (26%), Gaps = 80/361 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ ++E +C + W + + G L
Sbjct: 119 PKENLDPVVVQEGAPLTLQCN---PPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DL 173
Query: 111 DIIDTIPEDS-GTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+ + +D Y+C A Q + L
Sbjct: 174 YFSNVMLQDMQTDYSCNARFHFTHTIQQ------KNPFTLKVLTTRG------------- 214
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS 228
+ E T + + + G EC S T + W+ + S
Sbjct: 215 ------VAERTPSFMYPQGTASSQMVLRGMDLLLECI---ASGVPTPDIAWYKKGGDLPS 265
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
E N AL I EDSG Y C A N +G + ++ V +
Sbjct: 266 DKAKFENFN---KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----------- 311
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
AP + +++ +A + R G+ K
Sbjct: 312 --------------------------APYWLDEPKNLILAPGEDGRLVCR--ANGNPKPT 343
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W+ NG P+Q++ G + F+ T Y C NE G + ++ + V
Sbjct: 344 VQWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Query: 409 S 409
Sbjct: 403 D 403
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-30
Identities = 59/373 (15%), Positives = 99/373 (26%), Gaps = 95/373 (25%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTI--GHRFRPIHDFG-- 106
+ + R + EC+ + P W +N R I R G
Sbjct: 20 TKQSAKDHIVDPRDNILIECEAKGNPA----PSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ E G Y C A N G A LQ +
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ-------------------VSKSP 116
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP 225
+L ++EG +C P + + W +++
Sbjct: 117 L------------------WPKENLDPVVVQEGAPLTLQCN-PPPGLPSPVIFWMSSSME 157
Query: 226 -IKSGSRFTETNNFGFVALDIMQCLPEDS-GVYTCRAVNALGQAVTSGN---LLVHSKKS 280
I R ++ +N G L + +D Y+C A + N L V + +
Sbjct: 158 PITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR---DIHVAENQAAHFEA 337
+ + P F P V E
Sbjct: 215 V------------------------------AERTPSFMYPQGTASSQMVLRGMDLLLEC 244
Query: 338 RLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
I G + W + G + + +F L EDSG Y C A N++G
Sbjct: 245 --IASGVPTPDIAWYKKGGDLPSDKA--KFENFNKA-LRITNVSEEDSGEYFCLASNKMG 299
Query: 398 EAVTSSTLFVESK 410
+ ++ V++
Sbjct: 300 SIRHTISVRVKAA 312
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-25
Identities = 45/237 (18%), Positives = 80/237 (33%), Gaps = 36/237 (15%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-EDSSRITTKHDFGY 561
+ L + V+EG C P G P+ + W + R++ H+ G
Sbjct: 116 PLWPKENLDPVV-VQEGAPLTLQCN-PPPGLPSPVIFWMSSSMEPITQDKRVSQGHN-G- 171
Query: 562 VAMDLSHVRAED-EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ S+V +D + Y C A +++ K L++ T + +
Sbjct: 172 -DLYFSNVMLQDMQTDYSCNARFHFTH-----TIQQKNPFTLKVLTTRGVAERTPSFMYP 225
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ Q ++ G +C G PT W+ G +L
Sbjct: 226 QGTASSQM-------------------VLRGMDLLLECIAS--GVPTPDIAWYKKGGDLP 264
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ ++ L IT DSG Y C A N+ G + S++VK+ + E
Sbjct: 265 -SDKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDE 318
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 99.6 bits (248), Expect = 2e-22
Identities = 44/249 (17%), Positives = 71/249 (28%), Gaps = 50/249 (20%)
Query: 501 KQRPVFTK-PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKH 557
Q P TK ++ V+ N C G+P W RN + + R++ +
Sbjct: 14 TQPPTITKQSAKDHI-VDPRDNILIECE--AKGNPAPSFHWTRNSRFFNIAKDPRVSMRR 70
Query: 558 DFG--YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
G + E EG Y C A N G A++ + LQ+
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALS-------NRIRLQV----------- 112
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+ P++ + + EG C P G P+ W +
Sbjct: 113 -----------------SKSPLWPKENLDPVVVQEGAPLTLQCN-PPPGLPSPVIFWMSS 154
Query: 676 GVELKM-GSRFHVQHDFGYVTLDITKCVPADS-GVYMCKAINRAG-EAVSSTSLKVKSKS 732
+E R H+ G L + + D Y C A +K +
Sbjct: 155 SMEPITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLT 211
Query: 733 DIVSESLQP 741
P
Sbjct: 212 TRGVAERTP 220
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 2e-41
Identities = 60/497 (12%), Positives = 125/497 (25%), Gaps = 100/497 (20%)
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
+D V C +N + G S + +E+ +
Sbjct: 4 NQDLPVIKCVLINHKNNDSSVGK---SSSYPMVSESPEDLGCAL---------------- 44
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
Q+ + V + + + + + W+ + + +
Sbjct: 45 --RPQSSGTVYEAAAVEVDVSASITLQV--LVDAPGNISCLWVFKHSSLNCQPHF-DLQN 99
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
G V++ +G Y +E T+ + + L ++ L
Sbjct: 100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDAL 159
Query: 430 EDTSRFKRKEEEEVEVTQQPSFTVQLNG-PTELVEGEGTIITDTQHPKGLEKIRKLEDTE 488
E +P L E + E + K + + +L T+
Sbjct: 160 VCI----------SESVPEPIVEWVLCDSQGESCKEESPAVV----KKEEKVLHELFGTD 205
Query: 489 -------PHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWF 541
R L + ++ G+ C+ + + W
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQL-FLKVGEPLWIRCK-AVHVNHGFGLTWE 263
Query: 542 RNEKPLEDSSRI------TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
K LE+ + T + + +S V D G Y C ++ + +A +
Sbjct: 264 LENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVT 320
Query: 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS-EIMEGQSA 654
I EK + EI + +
Sbjct: 321 IV------------------------------------EKGFINATNSSEDYEIDQYEEF 344
Query: 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714
+ R P +R W + + D GY ++ G Y+ A
Sbjct: 345 CFSVRF--KAYPQIRCTWTFSRKSFPCEQK---GLDNGY-SISKFCNHKHQPGEYIFHAE 398
Query: 715 NRAGEAVSSTSLKVKSK 731
N + +L ++S
Sbjct: 399 NDDAQFTKMFTLNIRSG 415
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 2e-36
Identities = 59/516 (11%), Positives = 122/516 (23%), Gaps = 131/516 (25%)
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ-- 171
+T +D C +N N++ + S Y
Sbjct: 1 ETGNQDLPVIKCVLINHK---------------------NNDSS------VGKSSSYPMV 33
Query: 172 ---RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+ Q+ E+ + + + + W + +
Sbjct: 34 SESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQV--LVDAPGNISCLWVFKHSSLNC 91
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288
F + N G V++ I++ +G Y + + + +
Sbjct: 92 QPHF-DLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT---------- 140
Query: 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK 348
++T ENQ A +
Sbjct: 141 ---------------------------LLYTLRRPYFRKMENQDA-LVCI--SESVPEPI 170
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
V W+ ++ V K + C A NELG T
Sbjct: 171 VEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID- 225
Query: 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFTVQLNGPTEL 461
L K E + + T +L L
Sbjct: 226 ------------LNQTPQTTLPQLF---LKVGEPLWIRCKAVHVNHGFGLTWELEN-KAL 269
Query: 462 VEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDD------NAT-----------KQRP 504
EG ++ + + +I + + +D +++ ++
Sbjct: 270 EEGNYFEMSTYSTNRTMIRILFAFVSSVAR----NDTGYYTCSSSKHPSQSALVTIVEKG 325
Query: 505 VFTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ D +++ + FS R P ++ W + K + D GY
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGL---DNGYS- 379
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G YI A N + ++ I++
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 44/334 (13%), Positives = 79/334 (23%), Gaps = 94/334 (28%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
VEW V + C A N +G +
Sbjct: 170 IVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGRECTRL---- 221
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
T T+L +K G+
Sbjct: 222 -----------------------------------FTIDLNQTPQTTLPQLFLKVGEPLW 246
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRF------TETNNFGFVALDIMQCLPEDSGVY 256
C+ + V ++ + W N ++ G+ F T + + D+G Y
Sbjct: 247 IRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305
Query: 257 TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP 316
TC + Q+ + + K I
Sbjct: 306 TCSSSKHPSQSAL---VTIVEKGFIN---------------------------------- 328
Query: 317 VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALN 376
T D + + + F R +++ TW + + D GY ++
Sbjct: 329 -ATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGL---DNGYS-IS 381
Query: 377 FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ G Y A N+ + TL + S
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 7e-27
Identities = 40/375 (10%), Positives = 86/375 (22%), Gaps = 97/375 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
TV + ++E + + ++ N+ W + F + + G V++
Sbjct: 51 TVYEAAAVE-VDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMV 106
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I+ +G Y + + T+
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTV------------------------------- 135
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
+ ++T E Q A C S VEW + +S
Sbjct: 136 -------SIRNTLLYTLRRPYFRKMENQDA-LVCI--SESVPEPIVEWVLCDSQGESCKE 185
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+ V + C A N LG+ T +
Sbjct: 186 ----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID---------------- 225
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
+ + + + + + +TW
Sbjct: 226 ----------------------LNQTPQTTLPQLFLKVGEPLWIRCK-AVHVNHGFGLTW 262
Query: 352 LRNGVPIQASNRV------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
++ N + + D+G YTC + + S+ +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALV 319
Query: 406 FVESKASLQLDTQNE 420
+ K + +E
Sbjct: 320 TIVEKGFINATNSSE 334
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 3e-18
Identities = 33/240 (13%), Positives = 59/240 (24%), Gaps = 56/240 (23%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ ++T +E C P VEW + E +
Sbjct: 138 RNTLLYTLRRPYFRKMEN--QDALVCI--SESVPEPIVEWVLCDSQGE----SCKEESPA 189
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
V + + C A N LG T I +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRL--------------------FTIDLNQT 229
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P + +PQ + G+ C+ V + W + L+
Sbjct: 230 PQTTLPQL------------------FLKVGEPLWIRCKAVH-VNHGFGLTWELENKALE 270
Query: 681 MGSRFHV-QHDFGYV-----TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
G+ F + + ++ D+G Y C + S + + K I
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFI 327
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 5e-18
Identities = 29/223 (13%), Positives = 54/223 (24%), Gaps = 52/223 (23%)
Query: 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGYVA-----LDIIDT 115
L+ CK V + + W + + G+ F + +
Sbjct: 239 LKVGEPLWIRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Query: 116 IPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY 175
D+G YTC + + ++T
Sbjct: 298 ARNDTGYYTCSSSKHPS------------QSALVT------------------------- 320
Query: 176 IEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET 235
I E T S ++ EI + + F R ++ W + + +
Sbjct: 321 IVEKGF--INATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKGLDN 376
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
++ G Y A N Q L + S
Sbjct: 377 GY----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 1e-12
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 32/167 (19%)
Query: 569 VRAEDEGIYIC----KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASP 624
+D + C N +++ + ++ PE L +
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMV---------SESPEDLG--------CAL 44
Query: 625 MPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR 684
PQ YE E+ S V + W L
Sbjct: 45 RPQSSGTVYEAA--------AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPH 94
Query: 685 FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
F +Q+ G V++ I K +G Y+ + A ++ +++
Sbjct: 95 FDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 6/92 (6%)
Query: 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ T + + F + + ++ W + + + D GY
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKG---LDNGYS- 379
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ G Y A N TL
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-41
Identities = 41/234 (17%), Positives = 66/234 (28%), Gaps = 49/234 (20%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGS---RFTET 235
AP F L+N ++ A C++ P V+W+ I + R E
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKP------IVKWYRQGKEIIADGLKYRIQEF 57
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
G+ L I +D+ VY RA N G + +L V I
Sbjct: 58 KG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-------------- 102
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
P + M +H + + G +TW +
Sbjct: 103 ------------------HLPKTLEGMGAVHALRGEVVSIKIP--FSGKPDPVITWQKGQ 142
Query: 356 VPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
I + + + +D+G Y A N G + L V
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-38
Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 40/229 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITTKHDFGY 561
P F + L+N++ V NA C++ G P V+W+R K + + GY
Sbjct: 5 PHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ ++ V +D +Y +ATN G TAS++++ A +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI------------------- 102
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
P + + + G+ G P W +
Sbjct: 103 ------------HLPKTLEGMGAV-HALRGEVVSIKIPFS--GKPDPVITWQKGQDLIDN 147
Query: 682 GSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ V + D+G Y+ A NR G + L V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-33
Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 57/234 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--G 106
+ +++ +R + +A CK+ +P V+W++ G+ + I +F G
Sbjct: 8 KEELRNLN-VRYQSNATLVCKVTGHPKP------IVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
Y L I +D+ Y RA N G A+L+ A I
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI------------------ 102
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHN 222
P + G+ + P + W
Sbjct: 103 ---------------HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP------VITWQKG 141
Query: 223 NVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
I + + + +D+G Y A N G + L V
Sbjct: 142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 3e-21
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF-- 370
+ AP F + +R+++V A ++ G K V W R G I A + +F
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
GY L +D+ Y RA N+ G +++L VE A +
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIH 103
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-17
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF--GY 693
P F + L + +A C+V G P +W+ G E+ + +F GY
Sbjct: 5 PHFKEELRNL-NVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L I D+ VY +A N+ G + SL+V+ + I
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 4e-41
Identities = 76/667 (11%), Positives = 152/667 (22%), Gaps = 191/667 (28%)
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
+T +D C +N + + S+ E + L + Q
Sbjct: 1 ETGNQDLPVIKCVLINHK-----------NNDSSVGKSSSYPMVSESPEDLGCALRPQSS 49
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF 232
+ E E+ + V + W + + F
Sbjct: 50 GTVYEAAAV-----------EVDVSASITLQVL---VDAPGNISCLWVFKHSSLNCQPHF 95
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
N + I++ +G Y + + + +
Sbjct: 96 DLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT-------------- 140
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV--GDSKLKVT 350
++T ENQ A L+ + + V
Sbjct: 141 -----------------------LLYTLRRPYFRKMENQDA-----LVCISESVPEPIVE 172
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVES 409
W+ ++ S V K + C A NELG T T+ +
Sbjct: 173 WVLCDSQGESCKEESP----AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Query: 410 KASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-----QQPSFTVQ--LNGPTELV 462
L + K E + + F + L L
Sbjct: 229 TPQTTL-----------------PQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN-KALE 270
Query: 463 EGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNAT-----------------KQRPV 505
EG ++ + + +I + + +D ++
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVAR----NDTGYYTCSSSKHPSQSALVTIVEKGF 326
Query: 506 FTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAM 564
+ D +++ + FS R P ++ W + K + ++
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLD----NGYSI 380
Query: 565 DLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASP 624
G YI A N + ++ I+
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR-------------------------- 414
Query: 625 MPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF----------- 673
KP E ++ C G P + W
Sbjct: 415 ----------KPQVL---------AEASASQASCFS--DGYPLPSWTWKKCSDKSPNCTE 453
Query: 674 --VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
GV + +R TL++++ + C A N G + + L
Sbjct: 454 EITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPGP 511
Query: 732 SDIVSES 738
+ +
Sbjct: 512 FPFIQDG 518
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 7e-33
Identities = 69/575 (12%), Positives = 134/575 (23%), Gaps = 145/575 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
TV + ++E + + ++ N+ W + F + + G V++
Sbjct: 51 TVYEAAAVE-VDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMV 106
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I+ +G Y + + T+ R
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIR---------------------------- 138
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR 231
++T E Q A C S VEW + +S
Sbjct: 139 ----------NTLLYTLRRPYFRKMENQDA-LVCI--SESVPEPIVEWVLCDSQGES--- 182
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+ + V + C A N LG+ T +
Sbjct: 183 -CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID---------------- 225
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
++Q P T P + + + + + +TW
Sbjct: 226 --------------------LNQTPQTTLP--QLFLKVGEPLWIRCK-AVHVNHGFGLTW 262
Query: 352 LRNGVPIQASNRVS------TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
++ N + D+G YTC + S+ +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319
Query: 406 FVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG---PTELV 462
+ K + +E E++ ++ F+V+
Sbjct: 320 TIVEKGFINATNSSEDY-------------------EIDQYEEFCFSVRFKAYPQIRCTW 360
Query: 463 EGEGTIITDTQHPKGLEKIRKLEDTEPH---------KRPEVDDNATKQRPVFTKPLQNI 513
Q H + + + KP
Sbjct: 361 TFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ--- 417
Query: 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS---------RITTKHDFGYVAM 564
+ E + SC G P W + + + R + FG
Sbjct: 418 -VLAEASASQASCFSD--GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVS 474
Query: 565 D--LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
L+ A + C A N+LG + T +
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 99.8 bits (248), Expect = 4e-22
Identities = 43/372 (11%), Positives = 74/372 (19%), Gaps = 114/372 (30%)
Query: 68 AHFECKLEPVTDSNLKVE--WFKNGRPVTIGHRFRPI------HDFGYVALDIIDTIPED 119
CK N W + + G+ F + + D
Sbjct: 245 LWIRCK---AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179
+G YTC + + A + +I T
Sbjct: 302 TGYYTCSSSKHPSQS---ALVTIVEKG----------------------------FINAT 330
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ EI + + F R + ++ W + + +
Sbjct: 331 NSSEDY--------EIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLDNGY-- 378
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
++ G Y A N Q L + K
Sbjct: 379 --SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK--------------------- 415
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG---- 355
P A A + G TW +
Sbjct: 416 ----------------PQVLA------EASASQASCFSD----GYPLPSWTWKKCSDKSP 449
Query: 356 -----VPIQASNRVSTMHDFGY--VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ NR + FG + + C A N LG + + L
Sbjct: 450 NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
Query: 409 SKASLQLDTQNE 420
D +
Sbjct: 510 GPFPFIQDGGTK 521
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 89.4 bits (221), Expect = 1e-18
Identities = 35/248 (14%), Positives = 65/248 (26%), Gaps = 56/248 (22%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ ++T E ++A C P VEW + E +
Sbjct: 138 RNTLLYTLRRPYF-RKMENQDA-LVCI--SESVPEPIVEWVLCDSQGE----SCKEESPA 189
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
V + + C A N LG T I +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRL--------------------FTIDLNQT 229
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P + +PQ + G+ C+ V + W + L+
Sbjct: 230 PQTTLPQL------------------FLKVGEPLWIRCKAVH-VNHGFGLTWELENKALE 270
Query: 681 MGSRFHV------QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
G+ F + + + ++ D+G Y C + S + + K I
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFI 327
Query: 735 VSESLQPD 742
+ + D
Sbjct: 328 NATNSSED 335
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 1e-13
Identities = 27/251 (10%), Positives = 47/251 (18%), Gaps = 67/251 (26%)
Query: 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ T + + F + + ++ W + + + +
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKGLD----NGYS 379
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+ G Y A N TL I+
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTL-------------------NIRR------ 414
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-------N 222
P E + C W
Sbjct: 415 -------------KPQVLA--------EASASQASCFSD--GYPLPSWTWKKCSDKSPNC 451
Query: 223 NVPIKSGSRFTETNNFGFVALDIMQCL----PEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
I G + N F L + C A N+LG + + L
Sbjct: 452 TEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511
Query: 279 KSI--QTETQH 287
T+H
Sbjct: 512 FPFIQDGGTKH 522
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 9e-41
Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 41/233 (17%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNF 238
+ +AP +K+ K G+ A C+ + ++W+ + ++ +++
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQ---IVGRPLPDIKWYRFGKELIQSRKYKMSSDG 60
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L +M ED GVYTC A N +G+ TS LL+ +
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF----------------- 103
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ A +G +TW +
Sbjct: 104 -----------------HPGYPLKEKYYGAVGSTLRLHVM--YIGRPVPAMTWFHGQKLL 144
Query: 359 QASNRVSTMHDFGYVALNFKY-TYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
Q S ++ + Y L K +G Y + N G + ++ K
Sbjct: 145 QNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 5e-40
Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 40/231 (17%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ P K ++++ + G+ A SC++ VG P ++W+R K L S + D
Sbjct: 6 EAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + EDEG+Y C ATN +GE T++ + ++ E
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY--------- 113
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
G + + G P WF L+
Sbjct: 114 -------------------------YGAVGSTLRLHVMYI--GRPVPAMTWFHGQKLLQN 146
Query: 682 GSRFHVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+++ Y L + +G Y + N G + ++++ K
Sbjct: 147 SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-32
Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 57/235 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ K + + A C++ P ++W++ G+ + +++ D
Sbjct: 11 RKEMKDVT-TKLGEAAQLSCQIVGRPLP------DIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L ++ ED G YTC A N VG E + L L+
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL----------------------LQATP 101
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNV 224
++ G ++E G +P + WFH
Sbjct: 102 QFHPGYPLKEKYY-------------GAVGSTLRLHVMYIGRPVP------AMTWFHGQK 142
Query: 225 PIKSGSRFTETNNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+++ T N + L + +G Y + N G ++ + K
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 3e-23
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+AP + M+D+ +AA ++ VG + W R G + S + D
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413
L ED G YTC A NE+GE TSS L +++
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQF 103
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-22
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E P + + G++A C++V G P +W+ G EL ++ + D
Sbjct: 6 EAPGIRKEMKDV-TTKLGEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPD 742
TL + D GVY C A N GE +S+ L +++ +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKE 111
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 7e-40
Identities = 79/458 (17%), Positives = 131/458 (28%), Gaps = 117/458 (25%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPI-QASNRVSTMHD 369
S PVF + E A + L + W NG + + +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEE-KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA 60
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL 429
V N +D+G+Y C A N G V+ +ASL+ LQ+
Sbjct: 61 GDLVISNP--VKAKDAGSYQCVATNARGTVVSR-------EASLRF-----GFLQE---- 102
Query: 430 EDTSRFKRKEEEEVEVTQ---------------QPSFTVQLNGPTELVEGEGT------- 467
F +E + V++T+ S+ LN + +G
Sbjct: 103 -----FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157
Query: 468 ---IITDTQ------------HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQN 512
I T+ +D + K +
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ-LSLAAEDARQYAPSIKAKFPAD 216
Query: 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
G+ C G+P +++W + + + + + +V E
Sbjct: 217 T-YALTGQMVTLEC--FAFGNPVPQIKWRKLDGSQTSKWLSSEPL------LHIQNVDFE 267
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
DEG Y C+A N G + I
Sbjct: 268 DEGTYECEAENIKGRDTYQGRIII------------------------------------ 291
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
+ +P + ++T T G + C G P W +G L +R V
Sbjct: 292 HAQPDWLDVITDTE-ADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG-- 346
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L +K V DSG+Y C A N+ G +S L V++
Sbjct: 347 --ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-37
Identities = 65/358 (18%), Positives = 96/358 (26%), Gaps = 80/358 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + E F C P L W N P I R L I
Sbjct: 104 SAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYI 162
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
T D G Y+C A + + F +
Sbjct: 163 AKTEASDLGNYSCFATSHIDFITKSVFSK--------------------------FSQLS 196
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSR 231
+ I + GQ EC N +++W + S
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLEC---FAFGNPVPQIKWRKLDGSQTSKWL 253
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+E L I ED G Y C A N G+ G +++H+
Sbjct: 254 SSEPL------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------------- 293
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
P + + D + G + V W
Sbjct: 294 -----------------------QPDWLDVITDTEADIGSDLRWSCV--ASGKPRPAVRW 328
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
LR+G P+ + NR+ L F EDSG Y C A N+ G S+ L V++
Sbjct: 329 LRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 8e-36
Identities = 83/441 (18%), Positives = 131/441 (29%), Gaps = 85/441 (19%)
Query: 181 TQAPIFTTSLKNCEIKEG---QRAHFECRLIPVSDNTMKVEWFHNNVPIK--SGSRFTET 235
+ P+F + EG ++ CR ++ W N +K SR+
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
V + ++ +D+G Y C A NA G V SR
Sbjct: 60 AG-DLVISNPVK--AKDAGSYQCVATNARGTVV-----------------------SREA 93
Query: 296 QLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
L F + + + E F P L WL N
Sbjct: 94 SL-------------RFGFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLN 139
Query: 355 GVP--IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
P I A R G L T D G Y+C A + + S +
Sbjct: 140 EFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197
Query: 413 LQLDTQNEAALQKIQNLEDTSRFKRKEEE-EVEVTQQPSFTVQ---LNG--PTELVEGEG 466
D + A K + DT + E P ++ L+G ++ + E
Sbjct: 198 AAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP 257
Query: 467 T-IITDTQHPKGLEKIRKLEDT-----EPHKRPEVDDNAT----KQRPVFTKPLQNIDAV 516
I + ED E D +P + + +
Sbjct: 258 LLHIQNVD----------FEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDT-EA 306
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
+ G + +SC G P V W R+ +PL +RI + S + ED G+
Sbjct: 307 DIGSDLRWSCV--ASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGM 360
Query: 577 YICKATNALGEAVTTASMKIK 597
Y C A N G +A + ++
Sbjct: 361 YQCVAENKHGTVYASAELTVQ 381
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 8e-28
Identities = 60/348 (17%), Positives = 95/348 (27%), Gaps = 83/348 (23%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI-PEDSGTYTCR 126
C+ + W NG + +G R G L I + + +D+G+Y C
Sbjct: 25 VTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCV 80
Query: 127 AVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185
A N G + A+L+ +L+
Sbjct: 81 ATNARGTVVSREASLR-------------------FGFLQ------------------EF 103
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI---KSGSRFTETNNFGFVA 242
+I EG F C P + W N P G RF G
Sbjct: 104 SAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-G--N 159
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L I + D G Y+C A + + S V SK S +
Sbjct: 160 LYIAKTEASDLGNYSCFATSHIDFITKS----VFSKFSQLSLAAEDARQYA--------- 206
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
+ + D + Q E G+ ++ W + +
Sbjct: 207 ------------PSIKAKFPADTYALTGQMVTLEC--FAFGNPVPQIKWRKLDGSQTSKW 252
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
S L+ + ED GTY C A N G + + ++
Sbjct: 253 LSSEPL------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ 294
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 45/237 (18%), Positives = 71/237 (29%), Gaps = 40/237 (16%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---EDSSRITTKHDFG 560
F+ ++ + EG F+C P P L W NE P D R ++ G
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-G 158
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ ++ A D G Y C AT+ + + K
Sbjct: 159 --NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQL--------------------- 195
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ E RQY I + T + GQ +C G+P + +W
Sbjct: 196 ---SLAAEDARQYAPSIKAKFPADTY-ALTGQMVTLECFAF--GNPVPQIKWRKLDGSQT 249
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
L I D G Y C+A N G + + ++ D +
Sbjct: 250 SKWLSSEP------LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV 300
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 1e-21
Identities = 51/242 (21%), Positives = 76/242 (31%), Gaps = 47/242 (19%)
Query: 504 PVFTKPLQNIDAVE--EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PVF + + E + +CR +P W N L+ + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + + V+A+D G Y C ATNA G V+ +A L+
Sbjct: 63 LVI-SNPVKAKDAGSYQCVATNARGTVVS-------REASLRFGF--------------- 99
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL-- 679
F+ +I EG + C P P + + W +N
Sbjct: 100 -------------LQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFI 145
Query: 680 -KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
G RF Q G L I K +D G Y C A + S K S ++
Sbjct: 146 PADGRRFVSQTT-G--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 739 LQ 740
Q
Sbjct: 203 RQ 204
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 636 PIFTQLLTGT--SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P+F + T E + CR +P + W +NG ELKMG + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVAG- 61
Query: 694 VTLDITKCV-PADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSESLQP 741
L I+ V D+G Y C A N G VS SL+ + +E P
Sbjct: 62 -DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDP 110
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-39
Identities = 64/369 (17%), Positives = 102/369 (27%), Gaps = 102/369 (27%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+E L F C P + + G + R + L
Sbjct: 8 TISLSKVE-LSVGESKFFTCTAIGEPESI----DWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
I + ED+G Y C+A + G E L
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVL----------------------------- 93
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVP 225
Q F + E K+G+ A CR+ P V W ++N
Sbjct: 94 ---------EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP------AVSWLYHNEE 138
Query: 226 IKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
+ + S RF N L I+ D G+Y C + +++V
Sbjct: 139 VTTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIV-------- 187
Query: 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR--DIHVAENQAAHFEARLIP 341
V+ P + P + + + F R
Sbjct: 188 ---------------------------IVNVPPAISMPQKSFNATAERGEEMTFSCR--A 218
Query: 342 VGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
G + ++W RNG I+ + + L + D G Y CRA N+ GE
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEK 276
Query: 402 SSTLFVESK 410
+ L V +
Sbjct: 277 QAFLQVFVQ 285
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-30
Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 45/233 (19%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHD 558
Q+ F + + + ++G++A CR P V W + + + S R +
Sbjct: 96 YQKLTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 152
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ + ++ DEGIY C+ + + +
Sbjct: 153 NN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV------------------ 191
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
PA MPQ+ G+ + CR G P WF NG
Sbjct: 192 -PPAISMPQKSFNA--------------TAERGEEMTFSCRAS--GSPEPAISWFRNGKL 234
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
++ ++ ++ L + + +D G Y+C+A N+AGE L+V +
Sbjct: 235 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 51/303 (16%), Positives = 100/303 (33%), Gaps = 39/303 (12%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
T + + ++ ++ F +G+ + + G I ++ RV +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTC--TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLDTQNEAALQKIQNLEDTS 433
L ED+G Y C+A + G+ ++ L + K + + + Q + +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ-----GEDA 116
Query: 434 RFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPKGLEKIRKL--EDT-- 487
V+ P+ V + + +I + D
Sbjct: 117 EV------VCRVSSSPAPAVSWLYHNEEVTTISDNRF---AMLANNNLQILNINKSDEGI 167
Query: 488 -----------EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL 536
E R + + N E G+ FSCR G P
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA-TAERGEEMTFSCR--ASGSPEP 224
Query: 537 KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ WFRN K +E++ + K + + ++ D G Y+C+ATN GE A +++
Sbjct: 225 AISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Query: 597 KTK 599
+
Sbjct: 283 FVQ 285
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 39/232 (16%), Positives = 65/232 (28%), Gaps = 47/232 (20%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN-VPIKSGSRFTETNNF 238
+ T SL E+ G+ F C ++W++ I S R
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCT---AIGEPESIDWYNPQGEKIISTQRVVVQKEG 57
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L I ED+G+Y C+A +A GQ + +L
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL------------------------ 93
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ Q F + + + + A R V+WL + +
Sbjct: 94 ------------EIYQKLTFREVVSPQEFKQGEDAEVVCR--VSSSPAPAVSWLYHNEEV 139
Query: 359 QA--SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
NR + + + L D G Y C E + + V
Sbjct: 140 TTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 5e-27
Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 48/228 (21%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
T L ++ + G++ F+C +G+P + + + + R+ + +
Sbjct: 5 LQVTISLSKVE-LSVGESKFFTC--TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + + ED GIY C+AT+A G+ T ++I
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-------------------------- 95
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
Y+K F ++++ E +G+ A CRV P W + E+
Sbjct: 96 ----------YQKLTFREVVSPQ-EFKQGEDAEVVCRV--SSSPAPAVSWLYHNEEVTTI 142
Query: 683 S--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
S RF + + L I +D G+Y C+ A + + V
Sbjct: 143 SDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 38/239 (15%), Positives = 58/239 (24%), Gaps = 53/239 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
E ++ A C++ P V W + VT R
Sbjct: 102 REVVSPQE-FKQGEDAEVVCRVSSSPAP------AVSWLYHNEEVTTISDNR-FAMLANN 153
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L I++ D G Y C G + +
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEAR--------------GEIDFRDIIVIVN--------- 190
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
A N + G+ F CR + WF N I+
Sbjct: 191 -----------VPPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEE 237
Query: 229 GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
++ + L + + D G Y CRA N G+ L V + H
Sbjct: 238 NEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH---HHH 291
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
T L+ E+ G+S + C + G+P + G ++ R VQ +
Sbjct: 5 LQVTISLS-KVELSVGESKFFTCTAI--GEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
L I D+G+Y C+A + G+ +T L++ K
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 104
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-39
Identities = 75/359 (20%), Positives = 114/359 (31%), Gaps = 82/359 (22%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDII 113
T+ +S ++R C P L W N P +R + G L I
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIA 162
Query: 114 DTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173
D G YTC N V +V G L + E
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNHKVL------GPPTPLILRNDGVMGE-------------- 202
Query: 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN-VPIKSGSR 231
+ I + ++G EC N + W + PI +R
Sbjct: 203 -------YEPKIEVQFPETVPAEKGTTVKLEC---FALGNPVPTILWRRADGKPIARKAR 252
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
++N L+I ED+G Y C A N+ G+ V G L ++
Sbjct: 253 RHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA-------------- 294
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
P + Q + DIHVA ++ +E + G K W
Sbjct: 295 -----------------------QPNWVQIINDIHVAMEESVFWECK--ANGRPKPTYRW 329
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L+NG P+ +R+ LN D+G Y C A N+ G +S+ L V ++
Sbjct: 330 LKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 5e-38
Identities = 82/459 (17%), Positives = 147/459 (32%), Gaps = 121/459 (26%)
Query: 315 APVFTQPMRDIHV---AENQAAHFE--ARLIPVGDSKLKVTWLRNGVPIQ-ASNRVSTMH 368
PVF Q + +E + + G+ K + W NG + + ++
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVK----GNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQN 428
D + N +D+GTY C A N G V+ +A LQ A L+
Sbjct: 61 DGSLLINNP--NKTQDAGTYQCIATNSFGTIVSR-------EAKLQF-----AYLEN--- 103
Query: 429 LEDTSRFKRKEEEEVEVTQ---------------QPSFTVQLNGPTELVEGEGTIITDT- 472
FK + V V + + S+ N + + +T
Sbjct: 104 ------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG 157
Query: 473 -------------------QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNI 513
+ + L P + + + + +
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVT--NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
E+G C +G+P + W R + KP+ +R H + +++ + + E
Sbjct: 216 -PAEKGTTVKLEC--FALGNPVPTILWRRADGKPIARKARR---HKSNGI-LEIPNFQQE 268
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
D G Y C A N+ G+ V +
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTF------------------------------------ 292
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
Y +P + Q++ + +S ++C+ G P + W NG L R ++
Sbjct: 293 YAQPNWVQIINDIH-VAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG-- 347
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL+IT +D+G+Y C A N+ G SS L V ++
Sbjct: 348 --TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 1e-36
Identities = 69/442 (15%), Positives = 126/442 (28%), Gaps = 87/442 (19%)
Query: 183 APIFTTSLKNCEIK---EGQRAHFECRLIPVSDN-TMKVEWFHNNVPIK--SGSRFTETN 236
P+F + E ++ C V N + W N + R++ +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCE---VKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
+ + + +D+G Y C A N+ G V SR +
Sbjct: 62 G-SLLINNPNK--TQDAGTYQCIATNSFGTIV-----------------------SREAK 95
Query: 297 LEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
L + F T+ + V Q P +L W+ N
Sbjct: 96 L-------------QFAYLENFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNE 141
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
P NR + G L D G YTC N + + +
Sbjct: 142 YPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNG-PTELVE---GEGTIITD 471
+ E ++ + E E G P + +G I
Sbjct: 200 MGEYEPKIEV----------QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR 249
Query: 472 TQHPKGLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVFTKPLQNIDAVE 517
I ++ + + R + +P + + + +I V
Sbjct: 250 KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIH-VA 308
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
++ + C+ G P W +N PL RI + ++++ V D G+Y
Sbjct: 309 MEESVFWECK--ANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMY 362
Query: 578 ICKATNALGEAVTTASMKIKTK 599
C A N G ++A + + +
Sbjct: 363 QCVAENKHGVIFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-31
Identities = 72/367 (19%), Positives = 108/367 (29%), Gaps = 85/367 (23%)
Query: 53 VTKPKSIE--NLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
V +P + E C+++ P + W NG V IG FR G
Sbjct: 9 VQEPSHVMFPLDSEEKKVKLSCEVKGNPK----PHIRWKLNGTDVDIGMDFRYSVVDG-- 62
Query: 109 ALDIIDTI-PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
+L I + +D+GTY C A N G T E L Q YLE
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFG-----------------TIVSREAKL-QFAYLE-- 102
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI- 226
T + ++ GQ C P + W N P
Sbjct: 103 ----------------NFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNEYPSY 145
Query: 227 KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
+ RF G L I + D G YTC N + G ++ +
Sbjct: 146 QDNRRFVSQET-G--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
Query: 287 HGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK 346
+ + + Q + + E +G+
Sbjct: 203 Y--------------------------EPKIEVQFPETVPAEKGTTVKLEC--FALGNPV 234
Query: 347 LKVTWLR-NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ W R +G PI R H + L ED+G+Y C A N G+ V L
Sbjct: 235 PTILWRRADGKPIARKARR---HKSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 406 FVESKAS 412
++ +
Sbjct: 291 TFYAQPN 297
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 44/236 (18%), Positives = 74/236 (31%), Gaps = 38/236 (16%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-EDSSRITTKHDFGYV 562
F ++ +V G+ C P L W NE P +D+ R ++ G
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNEYPSYQDNRRFVSQET-G-- 157
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ ++ V D G Y C TN + L L
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP-----PTPLILRN---------------- 196
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKM 681
+ +P T +G + +C + G+P W +G +
Sbjct: 197 -----DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL--GNPVPTILWRRADGKPIAR 249
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+R H + L+I D+G Y C A N G+ V+ L ++ + V
Sbjct: 250 KARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI 301
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 2e-22
Identities = 47/241 (19%), Positives = 72/241 (29%), Gaps = 44/241 (18%)
Query: 504 PVFTKPLQNI--DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PVF + ++ E K SC G+P + W N ++ G
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCE--VKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + + + +D G Y C ATN+ G V+ +A LQ
Sbjct: 64 L-LINNPNKTQDAGTYQCIATNSFGTIVS-------REAKLQFAY--------------- 100
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
F T + GQ C P + + W N
Sbjct: 101 -------------LENFKTRTRSTVSVRRGQGMVLLCG-PPPHSGELSYAWIFNEYPSYQ 146
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVKSKSDIVSESLQ 740
+R V + G L I K +D G Y C N V + ++D V +
Sbjct: 147 DNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
Query: 741 P 741
P
Sbjct: 205 P 205
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 634 EKPIFTQLLTGTSEIM--EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
P+F Q + + E + C V G+P W +NG ++ +G F
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 692 GYVTLDITKCV-PADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSESLQP 741
G +L I D+G Y C A N G VS L+ + + +
Sbjct: 62 G--SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRST 111
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
V I + +ECK +P W KNG P+ R +
Sbjct: 299 VQIINDIH-VAMEESVFWECKANGRPKP------TYRWLKNGDPLLTRDRIQIEQG---- 347
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L+I D+G Y C A N G A L
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 4e-39
Identities = 39/229 (17%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGY 561
FTK ++ + E F + KV + NEK + + ++ + G
Sbjct: 3 DPFTKSELAVE-ILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ M + ++ EDEG Y + + +T + LQ E
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKE---------------- 104
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ ++ + + P F + L+ + + C+V + W+ + E+ +
Sbjct: 105 -AEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLKCKVANI-KKETHIVWYKDEREISV 160
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ + G TL IT+ D+G+Y + G+ S L ++
Sbjct: 161 DEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-38
Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 27/227 (11%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTETNNFGFVAL 243
FT S EI E + F + +S N KV + N I G + N G + +
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+ + ED G YT + + ++ L+ K +Q E +
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ------------- 110
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQASN 362
E Q P F + + V + ++ K + W ++ I
Sbjct: 111 -----EWIRKQGPHFVEYL-SWEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDE 162
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ G L +D+G Y ++ G+ + L E+
Sbjct: 163 KHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 2e-37
Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 27/225 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVAL 110
++E + E+G F + E + N KV + N + + G ++ + G + +
Sbjct: 6 TKSELAVE-ILEKGQVRFWMQAEKL-SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
+ ED GTYT + + L + + L+ ++++
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLV----------------GDVFKKLQKEAEF 107
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
QR E+I Q P F L E+ +C++ + T + W+ + I
Sbjct: 108 QRQEWIR---KQGPHFVEYLSW-EVTGECNVLLKCKVANIKKET-HIVWYKDEREISVDE 162
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + G L I + +D+G+Y + G+ + L+
Sbjct: 163 KHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 3e-16
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 479 EKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKV 538
+ +KL+ +R E KQ P F + L V N C++ + +
Sbjct: 96 DVFKKLQKEAEFQRQEWI---RKQGPHFVEYLSWE--VTGECNVLLKCKVANI-KKETHI 149
Query: 539 EWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593
W+++E+ + + K G + ++ +D GIY + G+ +
Sbjct: 150 VWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 202
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 8e-16
Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 24/152 (15%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN--RVSTMHDFGYV 373
FT+ + + E F + KV ++ N I ++ + G +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 61
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433
+ + ED GTYT + + ++ L + LQ + +
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE--------------- 106
Query: 434 RFKRKEEEEVEVTQQPSFTVQLNGPTELVEGE 465
+ +E Q P F L+ E+
Sbjct: 107 ----FQRQEWIRKQGPHFVEYLS--WEVTGEC 132
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 4e-15
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD--FGYVT 695
FT+ EI+E + + + + N E+ G ++ + D G +
Sbjct: 5 FTKSEL-AVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ + K D G Y + + S+ L + E+
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 7e-39
Identities = 46/240 (19%), Positives = 76/240 (31%), Gaps = 42/240 (17%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF-TET 235
ET P FT + + G A F C+ + + K+ W + + E
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQ---ATGDPRPKIVWNKKGKKVSNQRFEVIEF 57
Query: 236 NNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
++ L I P D +Y C A N +G+ S L V + I
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP------------ 105
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
P + V + A G+ ++TW ++
Sbjct: 106 ------------------RGFPTIDMGPQLKVVERTRTATMLCA--ASGNPDPEITWFKD 145
Query: 355 GVPIQASN---RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
+P+ SN R+ + AL + + D G Y C A N G ++ L+V
Sbjct: 146 FLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-35
Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 41/234 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-RITTKHDFGYV 562
P FT+ + G A F C+ GDP K+ W + K + + + D
Sbjct: 7 PRFTRTPVDQT-GVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 563 AMDLSHVR-AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + +R DE IY C A+N +GE + + + +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRE---------------------- 101
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ P + ++A C G+P WF + + +
Sbjct: 102 -------DQIPRGFPTIDMGPQLKV-VERTRTATMLCAAS--GNPDPEITWFKDFLPVDT 151
Query: 682 GS---RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
+ R L I + +D G Y C A N AG S+ +L V+
Sbjct: 152 SNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 49/238 (20%), Positives = 70/238 (29%), Gaps = 50/238 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIG-HRFRPIHDFGY 107
P G A F C+ P K+ W K G+ V+ D
Sbjct: 10 TRTPVDQT-GVSGGVASFICQATGDPRP------KIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 108 VALDIIDT-IPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
L I P D Y C A N VG V L +L Q G
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT------VLREDQIPRG--------- 107
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI 226
P + ++ + A C + ++ WF + +P+
Sbjct: 108 ----------------FPTIDMGPQLKVVERTRTATMLCA--ASGNPDPEITWFKDFLPV 149
Query: 227 KSGS---RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKS 280
+ + R + + AL I Q D G Y C A N+ G + NL V K
Sbjct: 150 DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+T P FT+ D A F + GD + K+ W + G + D
Sbjct: 1 ETGETPPRFTRTPVDQTGVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFD 58
Query: 370 FG--YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
G V P D Y C A N +GE S+ L V + +
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP 105
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 3e-16
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 497 DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS---RI 553
D + P Q VE + A C G+P ++ WF++ P++ S+ RI
Sbjct: 102 DQIPRGFPTIDMGPQLK-VVERTRTATMLCA--ASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
A+ + D+G Y C ATN+ G +
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-14
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HDFG 692
P FT+ + G A + C+ GDP + W G ++ ++ D
Sbjct: 5 TPPRFTRTPV-DQTGVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 693 YVTLDITKC-VPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
L I P D +Y C A N GE ST L V + I
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 4e-38
Identities = 74/441 (16%), Positives = 113/441 (25%), Gaps = 125/441 (28%)
Query: 312 VSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
++ P + A P G W+++G + S RV
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCP-PPGGGPMGPTVWVKDGTGLVPSERVLV---- 58
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
G L EDSG Y+CR S ++ +S
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSS-----------------G 101
Query: 431 DTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPH 490
D + + E+ T P +T
Sbjct: 102 DDEDGEDEAEDTGVDTGAPYWT-------------------------------------- 123
Query: 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550
+ K L AV F C G+PT + W +N +
Sbjct: 124 -----------RPERMDKKLL---AVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGE 167
Query: 551 SRIT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
RI K ++ + V D G Y C N G T ++ +
Sbjct: 168 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL------------ 215
Query: 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR 669
ER +PI L + G + C+V D
Sbjct: 216 --------------------ERSPHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPH 253
Query: 670 FEWF----VNGVELKMGSRFHVQ---------HDFGYVTLDITKCVPADSGVYMCKAINR 716
+W VNG ++ +V D L + D+G Y C A N
Sbjct: 254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS 313
Query: 717 AGEAVSSTSLKVKSKSDIVSE 737
G + S L V + + E
Sbjct: 314 IGFSHHSAWLVVLPAEEELVE 334
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 5e-38
Identities = 59/364 (16%), Positives = 93/364 (25%), Gaps = 82/364 (22%)
Query: 68 AHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
C W K+G + R G L +++ EDSG Y+C
Sbjct: 26 VELSCP---PPGGGPMGPTVWVKDGTGLVPSERVL----VGPQRLQVLNASHEDSGAYSC 78
Query: 126 RAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185
R + D + T AP
Sbjct: 79 RQRLTQR-----------------VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Query: 186 FT----TSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGF 240
+T K + F C P + N + W N + R
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 241 V-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
+L + +P D G YTC N G + L V
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV------------------------ 214
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR----NG 355
+E + + + + F + D++ + WL+ NG
Sbjct: 215 --------LERSPHRPILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNG 264
Query: 356 VPIQASNRV---------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406
+ + D L+ ED+G YTC A N +G + S+ L
Sbjct: 265 SKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Query: 407 VESK 410
V
Sbjct: 325 VLPA 328
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 2e-31
Identities = 41/234 (17%), Positives = 68/234 (29%), Gaps = 28/234 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ G C P W + + R L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCP-PPGGGPMGPTVWVKDGTGLVPSERVLVGPQ----RL 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
++ EDSG Y+CR + + S E E+
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTG--------- 114
Query: 304 RTSIIEDTVSQAPVFTQPMR----DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
+ AP +T+P R + V F G+ ++WL+NG +
Sbjct: 115 -------VDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFR 165
Query: 360 ASNRVSTMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+R+ + +L + P D G YTC N+ G + TL V ++
Sbjct: 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 1e-23
Identities = 54/306 (17%), Positives = 84/306 (27%), Gaps = 72/306 (23%)
Query: 10 PQDSSPYL----SSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRER 65
+DS Y +++ + V S + E+ + + P R
Sbjct: 70 HEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMD 129
Query: 66 GH---------AHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALD 111
F C P + W KNGR HR I +L
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTP------SISWLKNGREFRGEHRIGGIKLRHQQWSLV 183
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
+ +P D G YTC N G TL
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTL------------------------------- 212
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH----NNVPIK 227
+ +E + + + N G F C+ SD ++W N +
Sbjct: 213 --DVLERSPHRPILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVG 268
Query: 228 SGSRF---------TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
T + L + ED+G YTC A N++G + S L+V
Sbjct: 269 PDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Query: 279 KSIQTE 284
+ E
Sbjct: 329 EEELVE 334
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 5/113 (4%)
Query: 631 RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
R E P G + C P G P W +G L R V
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPP-PGGGPMGPTVWVKDGTGLVPSERVLVGPQ 61
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
L + DSG Y C+ + + S E + +A
Sbjct: 62 ----RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEA 110
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 5e-35
Identities = 64/445 (14%), Positives = 120/445 (26%), Gaps = 89/445 (20%)
Query: 314 QAPVFT-QPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLR-NGVPIQASNRVSTMHD 369
+ PVF +P I + + A E A G+ ++ W+R +G + + +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKAS----GNPMPEIIWIRSDGTAVGDVPGLRQISS 57
Query: 370 FG----YVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLDTQNEAALQ 424
G Y + Y C A N+ G ++ + + D E ++
Sbjct: 58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR 117
Query: 425 ------------KIQNLEDTSRFKRKEEEEVEVTQQPS--FTVQLNG-----PTELVEGE 465
+ + + + EEE + + V +G +G
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 466 GTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFS 525
+ T+H E R + + + P +Q +
Sbjct: 178 KSYQCRTKHRLTGETRLS----ATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 526 CRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATN 583
C G P W++ + + V+ L ED G Y+C N
Sbjct: 234 C--PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 584 ALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLT 643
++G + +
Sbjct: 292 SVGGESVETVLTV------------------------------------TAPLSAKIDPP 315
Query: 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP 703
+ + G+ A + C+ G+P W +G + L I
Sbjct: 316 TQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES----------VLRIESVKK 362
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
D G+Y C N A +S LK+
Sbjct: 363 EDKGMYQCFVRNDRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-30
Identities = 55/366 (15%), Positives = 89/366 (24%), Gaps = 96/366 (26%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGH-----RFRPIHDFG 106
+ A +C + D V W + ++ +
Sbjct: 107 EADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG- 164
Query: 107 YVALDIIDTIPEDS-GTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
L I + PED +Y CR + +
Sbjct: 165 --ELHIREVGPEDGYKSYQCRTKHRLTGETRL---------------------------- 194
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSL-KNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNN 223
+ R E ++ AP + K E+ C P W+
Sbjct: 195 -SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC---PAQGFPAPSFRWYKFI 250
Query: 224 VPIKSGSRFTETNNFGFVA--LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ V+ L I + EDSG Y C N++G L V +
Sbjct: 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA---- 306
Query: 282 QTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP 341
V + A F +
Sbjct: 307 ---------------------------------PLSAKIDPPTQTVDFGRPAVFTCQ--Y 331
Query: 342 VGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401
G+ V+W+++G I S V L + ED G Y C N+ A
Sbjct: 332 TGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEA 381
Query: 402 SSTLFV 407
S+ L +
Sbjct: 382 SAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 2e-24
Identities = 58/388 (14%), Positives = 93/388 (23%), Gaps = 93/388 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYV 108
+ +P + + A ECK + W + +G V R I G
Sbjct: 7 LKEPTNRIDFSNSTGAEIECKASGNPMPE-----IIWIRSDGTAVGDVPGLRQISSDG-- 59
Query: 109 ALDIIDTIPED------SGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQI 161
L ED + Y C A N G ++
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR-------------------- 99
Query: 162 QYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWF 220
A + + + G A +C + V+D V W
Sbjct: 100 ------------------AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 141
Query: 221 HNNVPIKSGSRFTETNNFGFV--ALDIMQCLPEDS-GVYTCRAVNALGQAVTSGNLLVHS 277
+ + L I + PED Y CR + L
Sbjct: 142 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA----- 196
Query: 278 KKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM-RDIHVAENQAAHFE 336
R I E S AP + + + +
Sbjct: 197 -----------------------TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLL 233
Query: 337 ARLIPVGDSKLKVTWLRNG--VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVN 394
G W + + + ++ L K EDSG Y C N
Sbjct: 234 C--PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 395 ELGEAVTSSTLFVESKASLQLDTQNEAA 422
+G + L V + S ++D +
Sbjct: 292 SVGGESVETVLTVTAPLSAKIDPPTQTV 319
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 7e-21
Identities = 41/239 (17%), Positives = 61/239 (25%), Gaps = 46/239 (19%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIP-VGDPTLKVEWFRNEKPL-----EDSSRITTKH 557
+ + V G +A C + V D V W +E+ E +
Sbjct: 104 QYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 558 DFGYVAMDL--SHVRAED-EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
+L V ED Y C+ + L ++
Sbjct: 163 SG-----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSA--------------------- 196
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+ P L+ E+M + C G P F W+
Sbjct: 197 ------TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYK 248
Query: 675 NGVELKMGSRFHVQHDFGYV--TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ V TL I V DSG Y+C N G T L V +
Sbjct: 249 FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 307
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-16
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 54/251 (21%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-PLEDSSRITTKHDF 559
++ PVF K N A C+ G+P ++ W R++ + D +
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECK--ASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58
Query: 560 G----YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
G + + +Y C A N G + S + +A
Sbjct: 59 GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII---SRDVHVRAV-------------- 101
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP-VGDPTMRFEWFV 674
A + +++ ++ G SA C + V D W
Sbjct: 102 -----VAQYYEADVNKEH--------------VIRGNSAVIKCLIPSFVADFVEVVSWHT 142
Query: 675 NGVELKM-----GSRFHVQHDFGYVTLDITKCVPADS-GVYMCKAINRAG-EAVSSTSLK 727
+ E ++ V L I + P D Y C+ +R E S +
Sbjct: 143 DEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKG 199
Query: 728 VKSKSDIVSES 738
++ +S S
Sbjct: 200 RLVITEPISSS 210
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 4e-15
Identities = 37/239 (15%), Positives = 67/239 (28%), Gaps = 60/239 (25%)
Query: 182 QAPIFTTSLKNC-EIKEGQRAHFECRLIPVSDN-TMKVEWFHNN-VPIKSGSRFTETNNF 238
+ P+F N + A EC+ S N ++ W ++ + + ++
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58
Query: 239 G------FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
G F A D Q + VY C A N G ++ +
Sbjct: 59 GKLVFPPFRAEDYRQ--EVHAQVYACLARNQFGSIISRDVHV------------------ 98
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP-VGDSKLKVTW 351
A + + HV +A + + V D V+W
Sbjct: 99 ------------------RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSW 140
Query: 352 LRNGVP-----IQASNRVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSST 404
+ + + + L+ + PED +Y CR + L S
Sbjct: 141 HTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 196
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 72/663 (10%), Positives = 147/663 (22%), Gaps = 193/663 (29%)
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177
+ + C + L+ + +TG Q +
Sbjct: 5 RGAWDFLCVLLLLL---------------------RVQTGSSQPS-------------VS 30
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
P + ++ G C V+W + + ++ E
Sbjct: 31 PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF------VKWTFEILDETNENKQNE--- 81
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
+ ++G YTC + L ++
Sbjct: 82 -----WITEKAEATNTGKYTCTNKHGLSNSIYV--------------------------- 109
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--NG 355
V R ++ E+ P+ D ++ L+ G
Sbjct: 110 -------------FVRDPAKLFLVDRSLYGKEDNDTLVR---CPLTDPEVTNYSLKGCQG 153
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
P+ R G + + K Y C E G++V S ++ + + +
Sbjct: 154 KPLPKDLRFIPDPKAGIMIKSVKRAY--HRLCLHCSVDQE-GKSVLSEKFILKVRPAFKA 210
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFTVQLNGPTELVEGEGTI 468
+ + +E EE VT T + ++ +
Sbjct: 211 ---------VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261
Query: 469 ITDTQHPKGLEKIRKLEDTEPH-----------KRPEVDDNAT---KQRPVFT-KPLQNI 513
+ + + + T + P+ N
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINT 321
Query: 514 DA-VEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMD-----L 566
V +G+N P +W + D K + L
Sbjct: 322 TVFVNDGENVDLIVEYE--AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
+ ++ + G Y +N+ A ++ + T
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT---------------------------- 411
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH 686
KP + C G P +W+ + S
Sbjct: 412 --------KPEIL-------TYDRLVNGMLQCVA--AGFPEPTIDWYFCPGTEQRCSASV 454
Query: 687 VQHDFG------------YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ D V I +G CKA N G+ + + K +
Sbjct: 455 LPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Query: 735 VSE 737
Sbjct: 515 QIH 517
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-34
Identities = 73/566 (12%), Positives = 128/566 (22%), Gaps = 150/566 (26%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
V+W T ++ ++G YTC +
Sbjct: 64 VKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTNKH-------------- 101
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
GL Y+ ++ KE
Sbjct: 102 -------------GLSNSIYV--------------FVRDPAKLFLVDRSLYGKEDNDTLV 134
Query: 204 ECRLIPVSDNTMKVEWFH--NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261
C ++D + P+ RF G + + + C
Sbjct: 135 RCP---LTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKR--AYHRLCLHCSVD 189
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
G++V S ++ + PV +
Sbjct: 190 QE-GKSVLSEKFILK-------------------------------VRPAFKAVPVVSVS 217
Query: 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA-----LN 376
+ E + I S + TW R + + ++ H + L
Sbjct: 218 KASYLLREGEEFTVTCT-IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 377 FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFK 436
DSG + C A N G A ++TL V K + +
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMIN---------------- 320
Query: 437 RKEEEEVEVTQQPSFTVQLNG---PTE---LVEGEGTIITDTQHPKGLEKIRKLEDTEPH 490
V + V+ P + +PK + +E H
Sbjct: 321 --TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELH 378
Query: 491 -KRPEVDD---------------NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534
R + + V TKP I + N C G P
Sbjct: 379 LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP--EILTYDRLVNGMLQCVAA--GFP 434
Query: 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMD------------LSHVRAEDEGIYICKAT 582
++W+ + S D + + + G CKA
Sbjct: 435 EPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAY 494
Query: 583 NALGEAVTTASMKIKTKAGLQLETQH 608
N +G+ + K Q+ H
Sbjct: 495 NDVGKTSAYFNFAFKGNNKEQIHPHH 520
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 132 bits (332), Expect = 1e-32
Identities = 59/518 (11%), Positives = 136/518 (26%), Gaps = 133/518 (25%)
Query: 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIED 310
+ + C + L +++ G Q + +
Sbjct: 5 RGAWDFLCVLLLLL-------------------------------RVQTGSSQPS--VSP 31
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
P D+ V V W + N+ +
Sbjct: 32 GEPSPPSIHPGKSDLIVRVGDEIRLLCT------DPGFVKWTFEILDETNENKQNE---- 81
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
+ ++G YTC + L ++ +FV A L L ++
Sbjct: 82 ----WITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPAKLFLVDRSLYG-------- 126
Query: 431 DTSRFKRKEEEEVEVT-----QQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLE 485
KE+ + V + + + + + I D + ++ +++
Sbjct: 127 -------KEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY 179
Query: 486 D-------------TEPHKRPEVD-DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV 531
+ ++ + A K PV + + + EG+ +C I
Sbjct: 180 HRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY-LLREGEEFTVTCT-IKD 237
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRAEDEGIYICKATNALG 586
++ W R + + + H + + R D G+++C A N G
Sbjct: 238 VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297
Query: 587 EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646
A T ++++ K + + T
Sbjct: 298 SANVTTTLEVVDKGFINIFPMINT----------------------------------TV 323
Query: 647 EIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYV-----TLDITK 700
+ +G++ P +W + + + L +T+
Sbjct: 324 FVNDGENVDLIVEY--EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR 381
Query: 701 CVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ G Y N A + ++ V +K +I++
Sbjct: 382 LKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYD 419
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 8e-28
Identities = 51/372 (13%), Positives = 88/372 (23%), Gaps = 88/372 (23%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVTIGHRFRPIHDFGYVA 109
+ +E C P+TD + K G+P+ RF P G +
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRC---PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 110 LDIIDTIPEDSGTYTCRAVNLVG-FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
+ C + L
Sbjct: 173 KSV--KRAYHRLCLHCSVDQEGKSVLSEKFIL---------------------------- 202
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS 228
+ P+ + S + ++EG+ C I +++ W N K
Sbjct: 203 ------KVRPAFKAVPVVSVSKASYLLREGEEFTVTCT-IKDVSSSVYSTWKRENSQTKL 255
Query: 229 GSRFTETNNFGFVA-----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
++ ++ F L I DSGV+ C A N G A + L V K I
Sbjct: 256 QEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI-- 313
Query: 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343
+F + V + +
Sbjct: 314 --------------------------------NIFPMINTTVFVNDGENVDLIVE-YEAF 340
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVA-----LNFKYTYPEDSGTYTCRAVNELGE 398
W+ + L+ + GTYT N
Sbjct: 341 PKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400
Query: 399 AVTSSTLFVESK 410
A + ++V +K
Sbjct: 401 AAIAFNVYVNTK 412
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 56/396 (14%), Positives = 97/396 (24%), Gaps = 116/396 (29%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNL--KVEWFKNGRPVTIGHRFRPIHDFGYVA 109
V+ K+ LRE C + D + W + + ++ H +
Sbjct: 213 VVSVSKASYLLREGEEFTVTCT---IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 110 -----LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164
L I DSG + C A N G A V TL+ I
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI---------------- 313
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWF 220
IF + +G+ P +W
Sbjct: 314 -------------------NIFPMINTTVFVNDGENVDLIVEYEAFPKPEH-----QQWI 349
Query: 221 HNNVPIKSGSRFTETNNFGFVA-----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ N + L + + + G YT N+ A + N+ V
Sbjct: 350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409
Query: 276 HSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335
++K P R N
Sbjct: 410 NTK-------------------------------------PEILTYDRL----VNGMLQC 428
Query: 336 EARLIPVGDSKLKVTWLRNG----------VPIQASNRVSTMHDFG--YVALNFKYTYPE 383
A G + + W +P+ S+ FG V + + +
Sbjct: 429 VAA----GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 384 DSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419
+GT C+A N++G+ + Q+ +
Sbjct: 485 HNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHH 520
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 1e-20
Identities = 50/386 (12%), Positives = 100/386 (25%), Gaps = 97/386 (25%)
Query: 383 EDSGTYTC----RAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRK 438
+ + C + G + S + S S+
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHP----------------------- 41
Query: 439 EEEEVEVTQQPSFTVQLNGPTELV-EGEGTII--TDTQHPKGLEKIRKLEDTEPHKRPE- 494
+ V++ L+ G + + K + +
Sbjct: 42 --------GKSDLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTG 93
Query: 495 ----VDDNAT--------KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR 542
+ + + +++ +E + C + DP + +
Sbjct: 94 KYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLY-GKEDNDTLVRCP---LTDPEVTNYSLK 149
Query: 543 --NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
KPL R G + S RA C G++V + +K +
Sbjct: 150 GCQGKPLPKDLRFIPDPKAGIMI--KSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVR- 205
Query: 601 GLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660
P + + + EG+ C +
Sbjct: 206 -----------------------PAFKAVPVVSVSK-------ASYLLREGEEFTVTCTI 235
Query: 661 VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV-----TLDITKCVPADSGVYMCKAIN 715
++ W + K+ +++ H + TL I+ DSGV+MC A N
Sbjct: 236 KD-VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANN 294
Query: 716 RAGEAVSSTSLKVKSKSDIVSESLQP 741
G A +T+L+V K I +
Sbjct: 295 TFGSANVTTTLEVVDKGFINIFPMIN 320
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 12/153 (7%), Positives = 33/153 (21%), Gaps = 47/153 (30%)
Query: 570 RAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEP 629
A ++C L ++ + +P+ P
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSV--------------------SPGEPSPPSIHPG 42
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
+ + G C + +W ++ ++ +
Sbjct: 43 KSDLI-------------VRVGDEIRLLCT----DPGFV--KWTFEILDETNENKQN--- 80
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722
K ++G Y C + ++
Sbjct: 81 -----EWITEKAEATNTGKYTCTNKHGLSNSIY 108
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 46/248 (18%), Positives = 77/248 (31%), Gaps = 44/248 (17%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS--GSRFTE 234
ET P +N ++ G A F C + + W N +
Sbjct: 1 ETGAHPPEIIRKPQNQGVRVGGVASFYCA---ARGDPPPSIVWRKNGKKVSGTQSRYTVL 57
Query: 235 TNNFGFVALDIMQC-LPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLS 292
G L I D Y C A N +G AV+ L ++
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG-------------- 103
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL 352
+ T + PV TQ + + +G+ + W+
Sbjct: 104 ----------------DKTPAGFPVITQGPGTRVIEVGHTVLMTCK--AIGNPTPNIYWI 145
Query: 353 RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST-LFVESKA 411
+N + SN ++ D G L + + ED G Y C A N +G + +T L+V+ +
Sbjct: 146 KNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202
Query: 412 SLQLDTQN 419
+
Sbjct: 203 VGTKHHHH 210
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-32
Identities = 58/238 (24%), Positives = 82/238 (34%), Gaps = 41/238 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGY 561
P + QN V G A F C GDP + W +N K + S + G
Sbjct: 7 PEIIRKPQNQG-VRVGGVASFYCA--ARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 562 VAMDLSHVRA-EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + VRA D+ Y C A N +G+AV+ A L +
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSA-------DATLTIYE-------------- 102
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
+ P+ TQ T I G + C+ + G+PT W N ++
Sbjct: 103 -------GDKTPAGFPVITQGPG-TRVIEVGHTVLMTCKAI--GNPTPNIYWIKNQTKVD 152
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS-TSLKVKSKSDIVSE 737
M + + D G L I D G Y C A N G S T+L VK +
Sbjct: 153 MSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 52/244 (21%), Positives = 75/244 (30%), Gaps = 52/244 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTI--GHRFRPIHDFG 106
+ KP++ +R G A F C P + W KNG+ V+ G
Sbjct: 10 IRKPQNQG-VRVGGVASFYCAARGDPPP------SIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 107 YVALDIIDT-IPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYL 164
L I D Y C A N VG A ATL I
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT------IYEG------------- 103
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV 224
++T P+ T I+ G C+ + + T + W N
Sbjct: 104 ------------DKTPAGFPVITQGPGTRVIEVGHTVLMTCK--AIGNPTPNIYWIKNQT 149
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSKKSIQT 283
+ + + G L I ED G Y C A N++G + NL V ++
Sbjct: 150 KVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK 206
Query: 284 ETQH 287
H
Sbjct: 207 HHHH 210
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 6e-33
Identities = 60/354 (16%), Positives = 94/354 (26%), Gaps = 93/354 (26%)
Query: 68 AHFECKLEPVTDSNLKVEWFK-NGRPV-TIGHRFRPIHDFGYV-ALDIIDTIPEDSGTYT 124
F C++ + + WF NG + R + + L I + +D+G Y
Sbjct: 20 KFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78
Query: 125 CRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183
C G E + Q
Sbjct: 79 CVVTAEDGTQSEATVNV--------------------------------------KIFQK 100
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPI--KSGSRFTETNNFGF 240
+F + E KEG+ A C V + + W H + K RF +N
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCD---VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-- 155
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I D G Y C + ++ V
Sbjct: 156 -YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV------------------------- 189
Query: 301 RYQRTSIIEDTVSQAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
V+ P Q + + Q+ G + ++W ++G PI
Sbjct: 190 ----------IVNVPPTVQARQSIVNATANLGQSVTLVCD--ADGFPEPTMSWTKDGEPI 237
Query: 359 QASNRVSTMHDF--GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ H F L + D Y C A N+ GE S L V +K
Sbjct: 238 ENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-27
Identities = 42/233 (18%), Positives = 68/233 (29%), Gaps = 41/233 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
Q+ +F +EG++A C V + W + + +
Sbjct: 98 FQKLMFKNAPTPQ-EFKEGEDAVIVCD--VVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + ++ DEG Y C+ + +Q+ P
Sbjct: 155 NY-LQIRGIKKTDEGTYRCEGRILARGEINFKD--------IQVIVNVP----------- 194
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P Q + GQS C G P W +G ++
Sbjct: 195 ---PTVQARQSIVNA-----------TANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIE 238
Query: 681 MGSRFHVQHDF--GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+H F L I D Y+C A N+AGE +S LKV +K
Sbjct: 239 NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 50/315 (15%), Positives = 100/315 (31%), Gaps = 53/315 (16%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASN-RVSTMHDFG 371
+ ++ ++ F + + ++W NG + + R+S + +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 372 YV-ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASLQLDTQNEAALQKIQNL 429
L +D+G Y C E G ++ + + K + +
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF------- 112
Query: 430 EDTSRFKRKEEEEV----EVTQQPSFTV--QLNGPTELVEGEGTIITDTQHPKGLEKIRK 483
KE E+ +V T+ + G +++ + +IR
Sbjct: 113 --------KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF---IVLSNNYLQIRG 161
Query: 484 L--ED--------------TEPHKRPEVDDNATKQRPVFTKPLQNIDA-VEEGKNAHFSC 526
+ D K +V N P ++A G++ C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNV---PPTVQARQSIVNATANLGQSVTLVC 218
Query: 527 RLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATNA 584
G P + W ++ +P+E+ KH F + +L +V DE Y+C A N
Sbjct: 219 D--ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276
Query: 585 LGEAVTTASMKIKTK 599
GE + +K+ K
Sbjct: 277 AGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 7e-23
Identities = 42/231 (18%), Positives = 71/231 (30%), Gaps = 50/231 (21%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPLEDSSRITTKHDFGY 561
+ + G++ F C+ + + WF EK + RI+ +
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 562 V-AMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELE 619
+ + + +D GIY C T G T ++KI
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------------------- 97
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
++K +F T E EG+ A C V V W G ++
Sbjct: 98 -------------FQKLMFKNAPTPQ-EFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDV 141
Query: 680 KM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ RF V + L I D G Y C+ A ++ ++V
Sbjct: 142 ILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 2e-21
Identities = 33/232 (14%), Positives = 54/232 (23%), Gaps = 47/232 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPIKSGSRFTETNNFG 239
+ EI G+ F C+ + + WF N + R + N
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 240 FV-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L I +D+G+Y C G + V
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNV----------------------- 95
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ Q +F E + A V + W G +
Sbjct: 96 ------------KIFQKLMFKNAPTPQEFKEGEDAVIVCD--VVSSLPPTIIWKHKGRDV 141
Query: 359 QASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + + L + D GTY C + + V
Sbjct: 142 ILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 53 VTKPKSIENLRERGH-AHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDF-- 105
+ + G C + P + W K+G P+ H F
Sbjct: 198 QARQSIVNATANLGQSVTLVCDADGFPEPT------MSWTKDGEPIENEEEDDEKHIFSD 251
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I + D Y C A N G + L+
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKMG-SRFHVQHDFGYV-TLDITKC 701
EI G+S + C+V WF NG +L R V + TL I
Sbjct: 11 QGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 702 VPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSES 738
D+G+Y C G +T ++K+ K +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-33
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
T AP T +++ + GQ F + S T +V+W+HN V ++ S+ TN
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
G + L+I+ C +DSG Y N G+A L V
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-31
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
T+ AP T MR V Q F + +V W NGV +Q S+++ +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
G + L + +DSGTY N GEA +TL V
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-28
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
P P T + + GQ+ + V PT +W+ NGVEL+ S+ H
Sbjct: 2 PFTLDHAPRITLRMRSH-RVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYT 58
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ G +TL+I C DSG Y N GEA +L V
Sbjct: 59 NTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-28
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
P T +++ V G+N F + PT +V+W+ N L++SS+I + G
Sbjct: 7 HAPRITLRMRSHR-VPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ +++ +D G Y TN GEA A++ +
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-19
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ +S + + F + +V+W+ NG + + + G +
Sbjct: 12 TLRMRSHR-VPCGQNTRFILNVQSKPTA------EVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
L+I+D +DSGTY N G A ATL G
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 41/231 (17%), Positives = 68/231 (29%), Gaps = 39/231 (16%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFT-ETNNFGF 240
AP F L+N ++ A C+ V+W+ I G ++ + G+
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I +D+ VY RA N G + +L V I
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI------------------- 102
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
P + M +H + + G +TW + I
Sbjct: 103 -------------HLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDN 147
Query: 361 SNRVSTMHDFGYVALNF-KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ + + +L F +D+G Y A N G + L V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-31
Identities = 45/231 (19%), Positives = 71/231 (30%), Gaps = 40/231 (17%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F + L+N+ V NA C+ G P V+W+R K + +F
Sbjct: 5 PHFKEELRNL-NVRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 564 MDL--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
L + V +D +Y +ATN G TAS++++ A KI
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA-------------KI-----H 103
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ + G+ G P W +
Sbjct: 104 LPKTLEGMGAV--------------HALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDN 147
Query: 682 GSRFHVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ V + +L V D+G Y+ A NR G + L V
Sbjct: 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 36/227 (15%), Positives = 64/227 (28%), Gaps = 43/227 (18%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKNGRPVTI-GHRFRPIH-DFGYVA 109
+ +++ N+R + +A CK VT V+W++ G+ + G ++R GY
Sbjct: 8 KEELRNL-NVRYQSNATLVCK---VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
L I +D+ Y RA N G A+L+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-------------------------- 97
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG 229
P + G+ + + W I +
Sbjct: 98 -------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDNN 148
Query: 230 SRF-TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + +D+G Y A N G + L V
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 21/181 (11%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH--DF 370
+ AP F + +R+++V A + G K V W R G I A +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG 59
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
GY L +D+ Y RA N+ G +++L VE A + L L+ + +
Sbjct: 60 GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT----LEGMGAVH 115
Query: 431 ----DTSRFKRKEEEEVEVTQQPSFTVQ--LNGPTELVEGEGTIITDTQHPKGLEKIRKL 484
+ K + + +P + + + T+ L +
Sbjct: 116 ALRGEVVSIK------IPFSGKPDPVITWQKGQ-DLIDNNGHYQVIVTRSFTSLVFPNGV 168
Query: 485 E 485
E
Sbjct: 169 E 169
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQH-DFGY 693
P F + L + + +A C+V G P +W+ G E+ G ++ +Q GY
Sbjct: 5 PHFKEELRNLN-VRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
L I D+ VY +A N+ G + SL+V+ + I
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI 102
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-32
Identities = 55/232 (23%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFGF 240
+AP+ TT L+ + + A F C S ++ W N + IK +R++ N
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENGQ- 62
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I+ D G+Y C A N +G AV S L
Sbjct: 63 -LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ------------------------- 96
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
V P T+P ++ + E A +G+ K V+W++ ++
Sbjct: 97 -----------VKMKPKITRPPINVKIIEGLKAVLPCT--TMGNPKPSVSWIKGDSALRE 143
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKA 411
++R+ + + G +L ED+G Y C A N LG A + L VE A
Sbjct: 144 NSRI-AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-32
Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 46/230 (20%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ PV T PL+ +D + A F C P ++ W RN+ ++ + + G
Sbjct: 5 PKAPVITTPLETVD-ALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + V D+GIY C A N +G AV + LQ+
Sbjct: 62 QLLT-ILSVEDSDDGIYCCTANNGVGGAVESC-------GALQV---------------- 97
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
KP T+ I+EG A C +G+P W L+
Sbjct: 98 ------------KMKPKITRPPINVK-IIEGLKAVLPCTT--MGNPKPSVSWIKGDSALR 142
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
SR V G +L I D+G Y C A N G A S L+V+
Sbjct: 143 ENSRIAVLES-G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-25
Identities = 49/230 (21%), Positives = 75/230 (32%), Gaps = 57/230 (24%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
T ++++ A F C + +P ++ W +N + + I + G +
Sbjct: 11 TTPLETVD-ALVEEVATFMCAVESYPQP------EISWTRNKILIKLFDTRYSIRENGQL 63
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I+ D G Y C A N VG A E L
Sbjct: 64 -LTILSVEDSDDGIYCCTANNGVGGAVESCGAL--------------------------- 95
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
P T N +I EG +A C + + V W + ++
Sbjct: 96 -----------QVKMKPKITRPPINVKIIEGLKAVLPCT--TMGNPKPSVSWIKGDSALR 142
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVH 276
SR + G +L I ED+G Y C A N+LG A + L V
Sbjct: 143 ENSRIAVLES-G--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-16
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ + +APV T P+ + + A F + +++W RN + I+ + ++ +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
G + L D G Y C A N +G AV S L V+ K
Sbjct: 60 NGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 7e-15
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQ 688
E+ + P+ T L T + + + A + C V P W N + +K+ +R+ ++
Sbjct: 2 EKLPKAPVITTPLE-TVDALVEEVATFMCAVE--SYPQPEISWTRNKILIKLFDTRYSIR 58
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
+ L I +D G+Y C A N G AV S +L+VK K I
Sbjct: 59 ENGQ--LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP 106
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-31
Identities = 42/227 (18%), Positives = 78/227 (34%), Gaps = 45/227 (19%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE--DSSRITTKHDFGY 561
F + + + ++G++A CR P V W + + + +R +
Sbjct: 3 LTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-N- 57
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + ++ DEGIY C+ + + + P P
Sbjct: 58 -NLQILNINKSDEGIYRCEGRVEARGEIDFRD--------IIVIVNVP-----------P 97
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
A MPQ+ G+ + CR G P WF NG ++
Sbjct: 98 AISMPQKSFNAT--------------AERGEEMTFSCRAS--GSPEPAISWFRNGKLIEE 141
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
++ ++ L + + +D G Y+C+A N+AGE L+V
Sbjct: 142 NEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 46/233 (19%), Positives = 74/233 (31%), Gaps = 50/233 (21%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIK--SGSRFTETNNFG 239
F + E K+G+ A CR VS + V W ++N + S +RF N
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-N 57
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L I+ D G+Y C + +++V
Sbjct: 58 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV------------------------ 91
Query: 300 GRYQRTSIIEDTVSQAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
V+ P + Q + + F R G + ++W RNG
Sbjct: 92 -----------IVNVPPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKL 138
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
I+ + + L + D G Y CRA N+ GE + L V +
Sbjct: 139 IEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 6e-24
Identities = 40/237 (16%), Positives = 61/237 (25%), Gaps = 61/237 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECK----LEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGY 107
T + S + ++ A C+ P V W + VT R
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAP------AVSWLYHNEEVTTISDNRFAMLANN 57
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
L I++ D G Y C G +
Sbjct: 58 N-LQILNINKSDEGIYRCEGRVEAR--------------GEIDFRD-------------- 88
Query: 168 SKYQRGEYIEETTTQAPIFTTS--LKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFH 221
I P + N + G+ F CR P + WF
Sbjct: 89 --------IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP------AISWFR 134
Query: 222 NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
N I+ ++ + L + + D G Y CRA N G+ L V +
Sbjct: 135 NGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-31
Identities = 45/231 (19%), Positives = 66/231 (28%), Gaps = 51/231 (22%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P TS + +C L S M W N V + + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME----- 57
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
I + EDSG Y C + + + + V +
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA------------------------- 91
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI---- 358
AP T R + E Q A + VG + W + +
Sbjct: 92 ------------APDITGHKRSENKNEGQDAMMYCKS--VGYPHPEWMWRKKENGVFEEI 137
Query: 359 -QASNRVSTMHDFGYVALN-FKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+S R ++ Y LN ED G Y C A N +G A S+ L V
Sbjct: 138 SNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-29
Identities = 44/235 (18%), Positives = 68/235 (28%), Gaps = 52/235 (22%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ P + I + C L + W +N L + + +
Sbjct: 1 QNEPRIVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM--- 56
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ RAED G Y C A++++K
Sbjct: 57 --EYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVK----------------------- 90
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P T + EGQ A C+ VG P + W +
Sbjct: 91 -------------AAPDITGHKRSEN-KNEGQDAMMYCKS--VGYPHPEWMWRKKENGVF 134
Query: 681 M-----GSRFHVQHDFGYVTLDITK-CVPADSGVYMCKAINRAGEAVSSTSLKVK 729
RF + + Y L+I + D G Y C A N G A ST L+V+
Sbjct: 135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 1e-23
Identities = 47/231 (20%), Positives = 71/231 (30%), Gaps = 55/231 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
VT + I +C L + + + W KNG +T + I
Sbjct: 7 VTSEEVIIRDSLL-PVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-----EYRI 60
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172
EDSG Y C + V + AT++ ++
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIE-------------------VKA--------- 91
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPI----- 226
AP T ++ EGQ A C+ + W +
Sbjct: 92 ----------APDITGHKRSENKNEGQDAMMYCK---SVGYPHPEWMWRKKENGVFEEIS 138
Query: 227 KSGSRFTETNNFGFVALDIMQ-CLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
S RF N + L+I+ + ED G Y C A N++G A S L V
Sbjct: 139 NSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P I + L + + W +NGV + A+ + ++
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-----E 57
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
EDSG Y C + + ++T+ V++
Sbjct: 58 YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAA 92
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 9e-12
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 7/103 (6%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+P C + M W NGVEL +
Sbjct: 3 EPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
I K DSG Y C + ++ +++VK+ DI
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGH 98
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFKNGRPVTIGH-----RFRPIH 103
+T K EN E A CK W K V RF I+
Sbjct: 94 DITGHKRSENKNEGQDAMMYCKSVGYPHPE-----WMWRKKENGVFEEISNSSGRFFIIN 148
Query: 104 DFGYVALDIID-TIPEDSGTYTCRAVNLVGFAEVQATL 140
Y L+I++ I ED G Y C A N +G A V L
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 7e-30
Identities = 40/238 (16%), Positives = 64/238 (26%), Gaps = 52/238 (21%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-------DSSRITT 555
+P + +N E C G+P ++ W R RI
Sbjct: 1 QPHIIQL-KNE-TTYENGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
K G ++ + V+ D G Y C+A + +G + + I+
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------------------ 98
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
P F T EG + C V +P W +
Sbjct: 99 ------------------YAPKFISNQT-IYYSWEGNPINISCDV--KSNPPASIHWRRD 137
Query: 676 GVELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ L + + L+I D G Y C A N G L +
Sbjct: 138 KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 39/237 (16%), Positives = 58/237 (24%), Gaps = 53/237 (22%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPI-------KSGSRFTET 235
P LKN E + C ++ W R
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCD---AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
G +L I DSG Y C A + +G S L +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------------------ 99
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
AP F + E + + + + W R+
Sbjct: 100 -------------------APKFISNQTIYYSWEGNPINISCDV--KSNPPASIHWRRDK 138
Query: 356 VPIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ + A N + T + L T D G Y C A N +G L +
Sbjct: 139 LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 60/240 (25%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGH-------RFR 100
+ + K+ E G C E P ++ W + T R
Sbjct: 3 HIIQLKNET-TYENGQVTLVCDAEGEPIP------EITWKRAVDGFTFTEGDKSLDGRIE 55
Query: 101 PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQ 160
G +L I D DSG Y C A + +G + L
Sbjct: 56 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL-------------------- 95
Query: 161 IQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF 220
AP F ++ EG + C + S+ + W
Sbjct: 96 ------------------DIEYAPKFISNQTIYYSWEGNPINISCDV--KSNPPASIHWR 135
Query: 221 HNNVPI--KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ + + K+ + + + L+I D G Y C A N +G L +
Sbjct: 136 RDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV 195
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHD 558
+ P F EG + SC + +P + W R++ L ++++ + T
Sbjct: 98 EYAPKFISNQTIYY-SWEGNPINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ ++++ D G Y C ATN +G + +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 10/111 (9%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI-------QASNRVSTMH 368
P Q ++ EN G+ ++TW R R+
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419
G +L+ K DSG Y C A + +G S L +E +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI 109
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-------RFHV 687
+P QL T E C G+P W R V
Sbjct: 1 QPHIIQLKNET--TYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWK 745
+ G +L I +DSG Y C+A +R G S L ++ +S +W+
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 31/228 (13%), Positives = 57/228 (25%), Gaps = 47/228 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGF 240
+ T + ++ + GQ CR + + ++ +WF N I +G+
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCR---ATGHPFVQYQWFKMNKEIPNGNTSE------- 66
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L +D+G Y CR N + L V
Sbjct: 67 --LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDI--------------------- 103
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
++ + + VG W +N +P+
Sbjct: 104 -PESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLT 160
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ Y E GTY C N+ + +
Sbjct: 161 HETKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-29
Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 44/227 (19%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ T ++ V G+ CR G P ++ +WF+ K + + +
Sbjct: 17 RGSKITVNPESKA-VLAGQFVKLCCR--ATGHPFVQYQWFKMNKEIPNGNTSE------- 66
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + V +D G Y+C+ N + S ++ + P
Sbjct: 67 --LIFNAVHVKDAGFYVCRVNNNFTFEFSQWS--------------------QLDVCDIP 104
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
S K T ++M G + C VG P ++WF N + L
Sbjct: 105 ESFQRSVDGVSESKLQICVEPTSQ-KLMPGSTLVLQCVA--VGSPIPHYQWFKNELPLTH 161
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
++ + G Y C N S +
Sbjct: 162 ETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-23
Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 51/226 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
P+S + C+ P ++ +WFK + + G+ L
Sbjct: 22 TVNPESKA-VLAGQFVKLCCRATGHPF----VQYQWFKMNKEIPNGNTSE---------L 67
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
+D+G Y CR N F Q + L + + + +
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL-------------------DVCDIPESFQ 108
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG 229
++ + + ++ G +C V +WF N +P+
Sbjct: 109 ----RSVDGVSESKLQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHE 162
Query: 230 SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ + E G Y C N + ++
Sbjct: 163 TKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 49/247 (19%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-- 559
Q P + ++ V++ + A +C+ G P +EWF++ +P+ + + + + F
Sbjct: 8 QSPRIIEHPTDLV-VKKNEPATLNCK--VEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 560 --GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ + + +D G Y C A N +G+AV+ A LQ+
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS-------RHASLQI------------- 104
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV 677
+ F T + +G++A +C G P W +GV
Sbjct: 105 --------------AVLRDDFRVEPKDT-RVAKGETALLECGPPK-GIPEPTLIWIKDGV 148
Query: 678 ELKMGSRFHVQHDFGYV-----TLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
L L I+ P D G Y C A N G SS L V+ K
Sbjct: 149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Query: 732 SDIVSES 738
+
Sbjct: 209 AAAHHHH 215
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-28
Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 48/248 (19%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNN 237
Q+P + +K+ + A C+ +EWF + P+ + R +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCK--VEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
F + +D G Y C A N +GQAV+ L ++ L
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL------------------QIAVL 107
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
F +D VA+ + A E P G + + W+++GVP
Sbjct: 108 -----------------RDDFRVEPKDTRVAKGETALLECG-PPKGIPEPTLIWIKDGVP 149
Query: 358 IQASNRVSTMHDFGYV-----ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKA 411
+ +S L P D G Y C A N +G +S L V+ KA
Sbjct: 150 LDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKA 209
Query: 412 SLQLDTQN 419
+ +
Sbjct: 210 AAHHHHHH 217
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 54/249 (21%), Positives = 82/249 (32%), Gaps = 58/249 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIG----HRFRPIHDFG 106
+ P + +++ A CK+E P +EWFK+G PV+ HR +
Sbjct: 13 IEHPTDLV-VKKNEPATLNCKVEGKPEPT----IEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ + +D G Y C A N VG A + A+LQ I L
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQ-------------------IAVL- 107
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNV 224
F K+ + +G+ A EC P + W + V
Sbjct: 108 -----------------RDDFRVEPKDTRVAKGETALLECG--PPKGIPEPTLIWIKDGV 148
Query: 225 PIKSGSRFTETNNFGFV-----ALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSK 278
P+ + + L I P D G Y C A N +G +S L+V K
Sbjct: 149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Query: 279 KSIQTETQH 287
+ H
Sbjct: 209 AAAHHHHHH 217
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 4e-16
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
R F ++ V +G+ A C P G P + W ++ PL+D ++
Sbjct: 108 RDDFRVEPKDT-RVAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 563 AMD-----LSHVRAEDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQH 608
+D +S+V DEG Y C A N +G + A + ++ KA H
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHHH 217
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 8e-13
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHV 687
QY+ P + T + + + A +C+V G P EWF +G + R
Sbjct: 6 QYQSPRIIEHPT-DLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKSDIVSESLQ 740
+ + + D G Y C A NR G+AVS SL++ D +
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 4e-29
Identities = 49/362 (13%), Positives = 90/362 (24%), Gaps = 90/362 (24%)
Query: 68 AHFECKLEPVTDS-----NLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT 122
C P + + W KN T+ AL ++ + EDSGT
Sbjct: 36 VALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT 95
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
Y C N ++ L+ + E T
Sbjct: 96 YVCTTRNASYCDKMSIELR----------------------------------VFENTD- 120
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPI-KSGSRFTETNNF 238
+ C + +K++W+ +++ + K +F
Sbjct: 121 -AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT 179
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L + ED+G Y C A + + +
Sbjct: 180 TH--LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELR-------------------- 217
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR-LIPVGDSKLKVTW-LRNGV 356
I + PV P++ I + + + G + W N
Sbjct: 218 --------IKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 357 PIQASNRVSTMHDFGY------------VALNFKYTYPEDSGT-YTCRAVNELGEAVTSS 403
I+++ + + V L F ED + C N L +
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
Query: 404 TL 405
T+
Sbjct: 330 TV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 1e-24
Identities = 46/327 (14%), Positives = 80/327 (24%), Gaps = 48/327 (14%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV-----GDSKLKVTWLRNGVPIQASNRV 364
+ + E + +P ++ +TW +N
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
T AL EDSGTY C N S L V L + Q
Sbjct: 73 ETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFL--PFISYPQ 130
Query: 425 KIQNLEDTSRFKRKEEEEVEVTQQPSFT-------VQLNGPTELVEGEGT--IITDTQ-- 473
+ E + + L T ++ D
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190
Query: 474 ----------HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAH 523
++ E + + PV PL+ I G
Sbjct: 191 DAGYYRCVLTFAHEGQQYNITRSIELR----IKKKKEETIPVIISPLKTIS-ASLGSRLT 245
Query: 524 FSCR-LIPVGDPTLKVEWFRNEKPL-----------EDSSRITTKHDFGYVAMDL--SHV 569
C+ + G P + W+ E + ++++ Y+ + L V
Sbjct: 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV 305
Query: 570 RAEDEGI-YICKATNALGEAVTTASMK 595
ED + + C N L ++K
Sbjct: 306 TREDLHMDFKCVVHNTLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 45/246 (18%)
Query: 492 RPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV-----GDPTLKVEWFRNEKP 546
+P A + + + +E G+ C +P P + + W +N+
Sbjct: 7 QPAAHTGAARSCRFRGRHYKREFRLE-GEPVALRCPQVPYWLWASVSPRINLTWHKNDSA 65
Query: 547 LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLET 606
T+ A+ L ED G Y+C NA + +++
Sbjct: 66 RTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENT------ 119
Query: 607 QHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV---PV 663
F ++ + S C +
Sbjct: 120 -----------------------------DAFLPFISYPQILTLSTSGVLVCPDLSEFTR 150
Query: 664 GDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
++ +W+ + + L + + G L + D+G Y C +
Sbjct: 151 DKTDVKIQWYKDSLLLDKDNEKFLSVR-GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN 209
Query: 724 TSLKVK 729
+ ++
Sbjct: 210 ITRSIE 215
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 1e-23
Identities = 33/234 (14%), Positives = 55/234 (23%), Gaps = 44/234 (18%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-----TMKVEWFHNNVPIKSGSRFTETNN 237
K EG+ C +P + + W N+
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
AL ++ L EDSG Y C NA S L V
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA---------------- 121
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI---PVGDSKLKVTWLRN 354
+ + + + + +K+ W ++
Sbjct: 122 -------------------FLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD 162
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ + N + G L ED+G Y C + T +E
Sbjct: 163 SLLLDKDNEKF-LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 2e-20
Identities = 34/246 (13%), Positives = 66/246 (26%), Gaps = 47/246 (19%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLI---PVGDPTLKVEWFRNEKPLEDSSRITTKH 557
+ F + + + C + +K++W+++ L+ +
Sbjct: 117 ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV 176
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
G + + V ED G Y C T A + I +L +
Sbjct: 177 R-GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI------ELRIK---------- 219
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV-VPVGDPTMRFEWFVNG 676
+++ P+ L T G C+V + G P W+
Sbjct: 220 -----------KKKEETIPVIISPLK-TISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267
Query: 677 ----------VELKMGSRFHVQHD---FGYVTLDITKCVPADSGV-YMCKAINRAGEAVS 722
+ G R + + V L D + + C N
Sbjct: 268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTL 327
Query: 723 STSLKV 728
T++K
Sbjct: 328 RTTVKE 333
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 4e-18
Identities = 33/242 (13%), Positives = 62/242 (25%), Gaps = 48/242 (19%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL---KVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ + L C + K++W+K+ + + + + G
Sbjct: 123 LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTH 181
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169
L + D ED+G Y C + T
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI----------------------- 218
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-----------DNTMKVE 218
++ P+ + LK G R C++ + N +E
Sbjct: 219 ------KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Query: 219 WFHNNVPIKSGSRFTETNN---FGFVALDIMQCLPEDSGV-YTCRAVNALGQAVTSGNLL 274
+ + G R + N + V L ED + + C N L +
Sbjct: 273 SAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Query: 275 VH 276
H
Sbjct: 333 EH 334
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 6e-10
Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 8/126 (6%)
Query: 622 ASPMPQEPERQ---YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV-----GDPTMRFEWF 673
A P +P F +EG+ C VP P + W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
N + + L + + DSG Y+C N + S L+V +D
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Query: 734 IVSESL 739
+
Sbjct: 121 AFLPFI 126
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-29
Identities = 47/257 (18%), Positives = 79/257 (30%), Gaps = 51/257 (19%)
Query: 496 DDNATKQRPVFTKPLQ---NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR 552
+++ K+ P +T + + AV F C G+P + W +N K + R
Sbjct: 8 ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP--AGGNPMPTMRWLKNGKEFKQEHR 65
Query: 553 ITTKH-DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
I + ++ + V D+G Y C N G T + +
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV-------------- 111
Query: 612 LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFE 671
ER +PI L + + G + C+V D +
Sbjct: 112 ------------------ERSRHRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQ 151
Query: 672 WF-----------VNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
W +G+ + + L + AD+G Y+CK N G+A
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 721 VSSTSLKVKSKSDIVSE 737
S L V K
Sbjct: 212 NQSAWLTVLPKQQAPGR 228
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 8e-29
Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 54/251 (21%)
Query: 177 EETTTQAPIFTTSLK----NCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSR 231
+AP +T + K + F C P N + W N K R
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHR 65
Query: 232 FTETNNFGFV-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
+L + +P D G YTC N G + +L V
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV--------------- 110
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+E + + + + F + D++ +
Sbjct: 111 -----------------VERSRHRPILQAGLPANASTVVGGDVEFVCK--VYSDAQPHIQ 151
Query: 351 WLRN-----------GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
W+++ G+P + S ++ L D+G Y C+ N +G+A
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211
Query: 400 VTSSTLFVESK 410
S+ L V K
Sbjct: 212 NQSAWLTVLPK 222
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-27
Identities = 42/235 (17%), Positives = 66/235 (28%), Gaps = 57/235 (24%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALDIIDTIPEDSGT 122
F C P + W KNG+ HR + +L + +P D G
Sbjct: 37 VKFRCPAGGNPMP------TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
YTC N G L +E + +
Sbjct: 91 YTCVVENEYGSINHTYHLD---------------------------------VVERSRHR 117
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN-----------VPIKSGSR 231
+ N G F C+ SD ++W + +P +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK--VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 232 FTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
+ N+ L + D+G Y C+ N +GQA S L V K+ +
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 6e-16
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 311 TVSQAPVFTQPM----RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
+AP +T R V F G+ + WL+NG + +R+
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP--AGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 367 MH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ +L + P D G YTC NE G + L V ++
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR 115
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 5e-13
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-------- 545
+V + + + + N G + F C+ D ++W ++ +
Sbjct: 109 DVVERSRHRPILQAGLPANAS-TVVGGDVEFVCK--VYSDAQPHIQWIKHVEKNGSKYGP 165
Query: 546 ---PLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
P + + + + L +V D G YICK +N +G+A +A + + K
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-29
Identities = 48/255 (18%), Positives = 78/255 (30%), Gaps = 52/255 (20%)
Query: 504 PVFTKPLQNID---AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DF 559
P +T+P + AV F C G+PT + W +N + RI
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHRIGGIKLRH 69
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
++ + V D G Y C N G T ++ + ++
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS------------------- 110
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF----VN 675
P P + L + + G + C+V D +W VN
Sbjct: 111 -PHRP-----------ILQAGLPANQT-AVLGSDVEFHCKVY--SDAQPHIQWLKHVEVN 155
Query: 676 GVELKMGSRFHVQ--------HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727
G ++ +V V L + D G Y+C+A N G A + L
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Query: 728 VKSKSDIVSESLQPD 742
V E ++ D
Sbjct: 216 VHGPRAAEEELVEAD 230
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 1e-26
Identities = 45/234 (19%), Positives = 66/234 (28%), Gaps = 58/234 (24%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGYVALDIIDTIPEDSGT 122
F C P + W KNGR HR I +L + +P D G
Sbjct: 33 VRFRCPAAGNPTP------SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
YTC N G TL +E + +
Sbjct: 87 YTCVVENKFGSIRQTYTLD---------------------------------VLERSPHR 113
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP------------IKSGS 230
+ N G F C+ SD ++W + +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
+ + V L + D G Y CRA N +G A + L VH ++ + E
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 8e-26
Identities = 42/250 (16%), Positives = 64/250 (25%), Gaps = 57/250 (22%)
Query: 179 TTTQAPIFTTSL----KNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRF 232
T AP +T K + F C P + W N + R
Sbjct: 7 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS----ISWLKNGREFRGEHRI 62
Query: 233 -TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESL 291
+L + +P D G YTC N G + L V
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV---------------- 106
Query: 292 SRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351
+E + + + + F + D++ + W
Sbjct: 107 ----------------LERSPHRPILQAGLPANQTAVLGSDVEFHCK--VYSDAQPHIQW 148
Query: 352 LR-----------NGVPIQASNRVSTMHDF-GYVALNFKYTYPEDSGTYTCRAVNELGEA 399
L+ +G P + V L D G Y CRA N +G A
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208
Query: 400 VTSSTLFVES 409
+ L V
Sbjct: 209 EKAFWLSVHG 218
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 1e-14
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 310 DTVSQAPVFTQPMR----DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
+ AP +T+P R + V F G+ ++WL+NG + +R+
Sbjct: 6 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHRIG 63
Query: 366 TMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ +L + P D G YTC N+ G + TL V ++
Sbjct: 64 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 111
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-12
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSE---IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
A P P +T+ + + + + C G+PT W NG E
Sbjct: 1 ADPDTGVDT---GAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGRE 55
Query: 679 LKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
+ R ++ +L + VP+D G Y C N+ G + +L V +S
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 110
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 8e-07
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRP------------VTIGH 97
P + F CK +D+ ++W K+ VT+
Sbjct: 115 ILQAGLPANQT-AVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171
Query: 98 RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ V L + + D G Y CRA N +G AE L
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT-E 234
+ +AP +++ + +G AHF R++ P + EW+ N V I+ R
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP------ECEWYKNGVKIERSDRIYWY 55
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I EDS +A+N G+ + LLV +K
Sbjct: 56 WPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-28
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTM-HDFGY 372
+AP + ++ V + AHF R+ VG + W +NGV I+ S+R+ +
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L + EDS + +A+N GE + + L V++K
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-26
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFG 692
E P + + + +G AH+ RVV G P EW+ NGV+++ R + +
Sbjct: 4 EAPKIFERIQSQ-TVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I DS M KAIN AGE S L V++K
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 4e-25
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT-KHDFG 560
+ P + +Q+ V +G +AHF R+ VG P + EW++N +E S RI +
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + V ED + KA N GE + A + ++ K
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-17
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGY 107
+ +S + + AHF ++ +P + EW+KNG + R +
Sbjct: 9 FERIQSQT-VGQGSDAHFRVRVVGKPDP------ECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
L I D EDS + +A+N+ G A L +
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-28
Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 52/242 (21%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH----- 557
P + ++ V +G+ A +C+ G PT +EW++ + +E H
Sbjct: 9 PPRIVEHPSDLI-VSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 558 --DFGYVAMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKK 614
++ + DEG+Y+C A N LGEAV+ AS+++
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV------------------ 107
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+ F Q + + G+ A +C+ P G P W
Sbjct: 108 -----------------AILRDDFRQNPSDV-MVAVGEPAVMECQP-PRGHPEPTISWKK 148
Query: 675 NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSD 733
+G L G L IT +D+G Y+C N GE S L V +
Sbjct: 149 DGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 734 IV 735
V
Sbjct: 206 FV 207
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 48/246 (19%), Positives = 80/246 (32%), Gaps = 51/246 (20%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSG-----SRFTETN 236
P + + +G+ A C+ T +EW+ +++ S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 237 NFG--FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
+ F+ + + D GVY C A N LG+AV+ L
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE------------------- 106
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
F Q D+ VA + A E + P G + ++W ++
Sbjct: 107 ----------------VAILRDDFRQNPSDVMVAVGEPAVMECQ-PPRGHPEPTISWKKD 149
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKASL 413
G P+ + T+ G L YT D+G Y C N +GE + L V + S
Sbjct: 150 GSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206
Query: 414 QLDTQN 419
+
Sbjct: 207 VKAAAH 212
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 1e-22
Identities = 45/247 (18%), Positives = 71/247 (28%), Gaps = 59/247 (23%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIH------- 103
V P + + + A CK E P +EW+K G V H
Sbjct: 13 VEHPSDLI-VSKGEPATLNCKAEGRPTPT----IEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 104 DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQ 162
++ + D G Y C A N +G A A+L+ +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE-------------------VA 108
Query: 163 YLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH 221
L F + + + G+ A EC+ P + + W
Sbjct: 109 IL------------------RDDFRQNPSDVMVAVGEPAVMECQ--PPRGHPEPTISWKK 148
Query: 222 NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKS 280
+ P+ G L I D+G Y C N +G+ + L V + S
Sbjct: 149 DGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 281 IQTETQH 287
H
Sbjct: 206 FVKAAAH 212
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 7e-12
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH--- 368
P + D+ V++ + A + G + W + G ++ H
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 369 ----DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
++ + D G Y C A N LGEAV+
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 8e-10
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH----- 689
P + + + +G+ A +C+ G PT EW+ G ++ H
Sbjct: 9 PPRIVEHPSDL-IVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 690 --DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSESLQ 740
++ + + D GVY+C A N GEAVS SL+V D ++
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS 119
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-28
Identities = 38/228 (16%), Positives = 60/228 (26%), Gaps = 37/228 (16%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ + + ++E C +L W N PV I R L
Sbjct: 10 FPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + D G Y+C + V + L +
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFI---------------------PLIPIPER 107
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSG 229
Y K+ GQ EC N + + W P+ S
Sbjct: 108 TTKPY-------PADIVVQFKDVYALMGQNVTLECF---ALGNPVPDIRWRKVLEPMPST 157
Query: 230 SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ + + L I ED G+Y C A N G+ + V +
Sbjct: 158 AEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 6e-28
Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 39/229 (17%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI---KSGSRFTETNNFGF 240
P +KEG+ C + + W N P+ RF N G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN-G- 66
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L I D G Y+C + + +T +
Sbjct: 67 -NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY------------- 112
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+D++ Q E +G+ + W + P+ +
Sbjct: 113 --------------PADIVVQFKDVYALMGQNVTLEC--FALGNPVPDIRWRKVLEPMPS 156
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ +ST G V L ED G Y C A N G+ + ++V++
Sbjct: 157 TAEIST---SGAV-LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-28
Identities = 38/230 (16%), Positives = 64/230 (27%), Gaps = 38/230 (16%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHDFG 560
P + + V+EGK C L W NE P+ R G
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ +++V A D+G Y C ++ + I +
Sbjct: 67 --NLYIANVEASDKGNYSCFVSSPSITKSVFSKF--------------------IPLIPI 104
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
P P + GQ+ +C + G+P W +
Sbjct: 105 PERTTKPYP------ADIVVQFKDV-YALMGQNVTLECFAL--GNPVPDIRWRKVLEPMP 155
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ L I D G+Y C+A N G+ + V++
Sbjct: 156 STAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-27
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ + + + +EG + C++ D + +V W+ +++ ++ T G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + D G Y C+ VN G+ + L V
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-26
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
+ + + E + ++ D +VTW ++ S + ++ G
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K D GTY C+ VN+ GE + + LFV+
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ + + + EEG + + C++ D + +V W+ + LE+S + ++ G
Sbjct: 2 AMVSGQIMHA-VGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + D+G Y CK N GE + A + +K
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-25
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ + + EG Y C++ D + + W+ +L+ ++ + ++ G
Sbjct: 2 AMVSGQIMHA-VGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
L + D G Y CK +N GE S L VK +
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-21
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ E GH + CK+E D + +V W+ R + ++ ++ G L +
Sbjct: 5 SGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYV 62
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
D D GTY C+ VN G A L +G
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 47/359 (13%), Positives = 80/359 (22%), Gaps = 88/359 (24%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP-IHDFGYVALDIIDTIPEDSGTYTCR 126
C L P + + W+K+ + IH L + EDSG Y C
Sbjct: 23 DVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFVPAKVEDSGHYYCV 80
Query: 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186
N ++ + + E
Sbjct: 81 VRNSSYCLRIKISAK----------------------------------FVENEPNLCYN 106
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTM----KVEWFHNNVPIKSGSRFTETNNFGFVA 242
++ ++ C + N K++W+ + P+ +
Sbjct: 107 AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DR 163
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L +M + G YTC A ++
Sbjct: 164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI------------------------ 199
Query: 303 QRTSIIEDTVSQAPVFTQPMRD-IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
+E+ PV P + + V + G W NG I
Sbjct: 200 ----TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDED 253
Query: 362 NRV------------STMHDFGYVALNFKYTYPED-SGTYTCRAVNELGEAVTSSTLFV 407
+ V + LN +TC A N G L
Sbjct: 254 DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 98.6 bits (245), Expect = 1e-22
Identities = 38/319 (11%), Positives = 82/319 (25%), Gaps = 40/319 (12%)
Query: 314 QAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDF 370
+A + + + N+ L P + K +TW ++ S + S +H
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430
L F EDSG Y C N + QK+ +
Sbjct: 61 KEK-LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLP-VA 118
Query: 431 DTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLED---- 486
E + +Q + + + + + + + + +
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE-KHRGNY 177
Query: 487 ----TEPHKRPE----------VDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
+ + + + RPV P V+ G C + G
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT--G 235
Query: 533 DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD------------LSHVRAED-EGIYIC 579
+ W N +++ + + + +S + + + + C
Sbjct: 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC 295
Query: 580 KATNALGEAVTTASMKIKT 598
A N G +
Sbjct: 296 FAKNTHGIDAAYIQLIYPV 314
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 95.2 bits (236), Expect = 2e-21
Identities = 32/242 (13%), Positives = 64/242 (26%), Gaps = 49/242 (20%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLI----PVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
+ + + C + + K++W+++ KPL + +
Sbjct: 103 LCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK- 161
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
+ + +V + G Y C A+ + I+ E
Sbjct: 162 DRLIV--MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI---------------TLEEN 204
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
+P P+ P + T E+ G C V G + W NG +
Sbjct: 205 KPTRPVIVSPANE------------TMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVI 250
Query: 680 KMGSRF------------HVQHDFGYVTLDITKCVPAD-SGVYMCKAINRAGEAVSSTSL 726
+ + L+I++ + C A N G + L
Sbjct: 251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Query: 727 KV 728
Sbjct: 311 IY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 85.2 bits (210), Expect = 4e-18
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 41/216 (18%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNN----VPIKSGSRFTETNNFGFVALDIMQCLPED 252
+ C L P +++ + W+ ++ V + SR + L + ED
Sbjct: 19 ANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKE----KLWFVPAKVED 73
Query: 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTV 312
SG Y C N+ + + Q +++ +
Sbjct: 74 SGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN------------AQAIFKQKLPVAGDG 121
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
P + E + K+ W ++ P+ N +
Sbjct: 122 ----GLVCPYMEFFKNE-------------NNELPKLQWYKDCKPLLLDNIHFSGVK--- 161
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L + G YTC A T +E
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 5e-18
Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 50/247 (20%)
Query: 504 PVFT-KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL----EDSSRITTKHD 558
+ + I + C L P + + W++++ E +SRI +
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ + ED G Y C N+ S K E
Sbjct: 63 ----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA-------------------KFVEN 99
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV----PVGDPTMRFEWFV 674
E Q +Q + C + + + +W+
Sbjct: 100 EPNLCYNAQAIFKQK--------------LPVAGDGGLVCPYMEFFKNENNELPKLQWYK 145
Query: 675 NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ L + + L + G Y C A + ++ +
Sbjct: 146 DCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE 202
Query: 735 VSESLQP 741
++ +P
Sbjct: 203 ENKPTRP 209
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 2e-13
Identities = 29/208 (13%), Positives = 55/208 (26%), Gaps = 48/208 (23%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
K++W+K+ +P+ + + L +++ + G YTC A
Sbjct: 140 KLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYL---------- 186
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN-CEIKEGQRA 201
G +T +EE P+ + E+ G +
Sbjct: 187 -GKQYPITRVIEFI------------------TLEENKPTRPVIVSPANETMEVDLGSQI 227
Query: 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA------------LDIMQCL 249
C + + W N I + + L+I +
Sbjct: 228 QLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 250 PED-SGVYTCRAVNALGQAVTSGNLLVH 276
+TC A N G L+
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQLIYP 313
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
+ C + P + W+ + + + + + L DSG Y
Sbjct: 19 ANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHY 77
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQLKE 751
C N + S K + + Q +K+ +
Sbjct: 78 YCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-27
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+S PV ++D V+ + A F + G+ + W ++G I + D G
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
L T DSG YTC N G +S L +++
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-26
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
+ P+ T L++ + A F + P W + I G ++ + +
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEP----RPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
G L+I + DSG+YTC N+ G +S L + +
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-25
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
KP+ L T + A + + G+P W +G + G ++ + D G
Sbjct: 4 SSKPVIVTGLQDT-TVSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L+I K +DSG+Y C N AG SS L +K+
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-24
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+PV LQ+ V A F+ + G+P W ++ K + + D G
Sbjct: 4 SSKPVIVTGLQDT-TVSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ D G+Y C N+ G ++ + IK
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-17
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
VT + + A F K P W K+G+ +T G +++ D G
Sbjct: 10 VTGLQDTT-VSSDSVAKFAVKATGEPRP------TAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
L+I T DSG YTC N G L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 47/332 (14%), Positives = 86/332 (25%), Gaps = 92/332 (27%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
VEW P + G L + +++GTY C + L +
Sbjct: 32 VEWDGPISP----YWTLDPESPGST-LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK 86
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
A + + + EGQ A
Sbjct: 87 DPA-------------------------------------HSWNLLAQEVTVVEGQEAVL 109
Query: 204 ECRLIPVSDNTMK--VEWFHNNVPIK-SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260
C ++D +K V + + + GF+ I + DS Y C+
Sbjct: 110 PCL---ITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFI---IRKAKVLDSNTYVCKT 163
Query: 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ 320
+ G+ TS + + + + P
Sbjct: 164 MVN-GRESTSTGIWLK-------------------------------VNRVHPEPPQIKL 191
Query: 321 PMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNG---VPIQASNRVSTMHDFGYVAL 375
+ +AA A L+ G + I ++ + AL
Sbjct: 192 EPSKLVRIRGEAAQIVCSAT----NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRAL 247
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ +D+G Y+C A N++G + V
Sbjct: 248 SLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 1e-21
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 41/235 (17%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ Q + V EG+ A C I V R + +
Sbjct: 89 AHSWNLLAQEV-TVVEGQEAVLPCL-ITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG- 145
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + D Y+CK G T+ + +K
Sbjct: 146 -FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVN----------------------- 180
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG---VEL 679
+ EP P + + G++A C G +E+
Sbjct: 181 -RVHPEP------PQIKLEPSKL-VRIRGEAAQIVCSAT--NAEVGFNVILKRGDTKLEI 230
Query: 680 KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ S F + L + D+G+Y C A N G ++ + +V
Sbjct: 231 PLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 2e-19
Identities = 35/218 (16%), Positives = 55/218 (25%), Gaps = 49/218 (22%)
Query: 68 AHFECKLEPVTDSNLK--VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125
A C +TD LK V + G + + I DS TY C
Sbjct: 107 AVLPC---LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG--FIIRKAKVLDSNTYVC 161
Query: 126 RA-VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184
+ VN L + + P
Sbjct: 162 KTMVNGRESTSTGIWL----------------------------------KVNRVHPEPP 187
Query: 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVE-WFHNN---VPIKSGSRFTETNNFGF 240
G+ A C ++ + + I S F +
Sbjct: 188 QIKLEPSKLVRIRGEAAQIVCS---ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
AL + +D+G+Y+C A N +G + N V
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 2e-17
Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 51/225 (22%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
AP+ S ++ G+ C + + VEW P + + + G
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV---SNGS---VEWDGPISPYWT----LDPESPGST- 52
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRY 302
L +++G Y C + T+ +L V
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP------------------------ 88
Query: 303 QRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN 362
A + +++ V E Q A I K V+ +R G
Sbjct: 89 ------------AHSWNLLAQEVTVVEGQEAVLPCL-ITDPALKDSVSLMREGGRQVLRK 135
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
V + + DS TY C+ + G TS+ +++
Sbjct: 136 TVYFFSPWRG--FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWL 177
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 37/230 (16%), Positives = 59/230 (25%), Gaps = 52/230 (22%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PV + VE G+ C + + VEW P T +
Sbjct: 4 APVIEPSGPEL-VVEPGETVTLRCV----SNGS--VEWDGPISP-----YWTLDPESPGS 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ + ++ G Y C TT + +K PA
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK----------------------DPA 89
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ ++EGQ A C + G +
Sbjct: 90 HSWNLLAQEVT--------------VVEGQEAVLPCL-ITDPALKDSVSLMREGGRQVLR 134
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
+ + I K DS Y+CK + E+ S+ LKV
Sbjct: 135 KTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV 182
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 9e-15
Identities = 45/309 (14%), Positives = 83/309 (26%), Gaps = 58/309 (18%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
APV ++ V + + V W P + S
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV----SNGS--VEWDGPISPYWTLDPESPGS-----T 52
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSR 434
L + +++GTY C + + T+ L+V+ A E +
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTV----------- 101
Query: 435 FKRKEEEEVEVT-------QQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR--KLE 485
E +E + + S ++ G +++ P IR K+
Sbjct: 102 ---VEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF----SPWRGFIIRKAKVL 154
Query: 486 D-------------TEPHKRPEVDDNATKQRP-VFTKPLQNIDAVEEGKNAHFSCRLIPV 531
D + N P + G+ A C
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV-RIRGEAAQIVCS--AT 211
Query: 532 GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD---LSHVRAEDEGIYICKATNALGEA 588
+ + + D Y + L+ V +D GIY C A+N +G
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR 271
Query: 589 VTTASMKIK 597
T + ++
Sbjct: 272 TATMNFQVV 280
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G++ C EW + + + TL ++G
Sbjct: 16 VEPGETVTLRCVS------NGSVEWDGPISP-----YWTLDPESPGSTLTTRNATFKNTG 64
Query: 708 VYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
Y C + ++ L VK + + Q
Sbjct: 65 TYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQE 98
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-26
Identities = 31/236 (13%), Positives = 59/236 (25%), Gaps = 56/236 (23%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
+ F + N G C+ + V +V W + ++ G
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 242 ---------ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292
L I D+G Y C V+ +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYV------------------ 101
Query: 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTW 351
+ P F + D VA N + + G + + + W
Sbjct: 102 ------------------GLEGLPYFLEEPEDRTVAANTPFNLSCQ--AQGPPEPVDLLW 141
Query: 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L++ VP+ + L + +++C A N G + +
Sbjct: 142 LQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFSCEAHNAKGVTTSRTATIT 190
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-23
Identities = 37/235 (15%), Positives = 63/235 (26%), Gaps = 57/235 (24%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ F NI G C+ + V +V W R+ + LE + T+ G
Sbjct: 1 EESPFVGNPGNI-TGARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 562 VAMD---------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGL 612
D ++ ++ D G Y C V+ + LE
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-------QPGYVGLE------- 104
Query: 613 KKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFE 671
P F + + + C+ G P +
Sbjct: 105 ---------------------GLPYFLEEPEDR-TVAANTPFNLSCQA--QGPPEPVDLL 140
Query: 672 WFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
W + V L Q +L + + + C+A N G S T+
Sbjct: 141 WLQDAVPLATAPGHGPQR-----SLHVPG--LNKTSSFSCEAHNAKGVTTSRTAT 188
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 2e-18
Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 66/237 (27%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV---- 108
V P +I C+L V +V W ++G+ + + + G
Sbjct: 6 VGNPGNIT-GARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 109 -----ALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQ 162
L I D+G Y C Q + G
Sbjct: 64 WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG------------------ 105
Query: 163 YLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVE 218
P F ++ + + C+ PV +
Sbjct: 106 --------------------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVD-----LL 140
Query: 219 WFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
W + VP+ + + L + ++C A NA G + +
Sbjct: 141 WLQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFSCEAHNAKGVTTSRTATIT 190
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 7e-11
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E+ F G + C++ V W +G L++ Q G
Sbjct: 1 EESPFVGNPG-NITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 694 V---------TLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
L IT +D+G Y C VS + ++ + E
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE 112
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-10
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 11/107 (10%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+ F +I A + + V +V WLR+G ++ ++ T G
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 374 ---------ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESK 410
L D+G Y C V+ + +E
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-26
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRF--TE 234
++ AP F LK+ +I EG F CR+ P K+ WF + I S +
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNP----KPKIYWFKDGKQISPKSDHYTIQ 59
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+ G +L +D G YT A N G+ +G L+V + S
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 5e-24
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH- 368
S AP F ++ + E F R+ G+ K K+ W ++G I + T+
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 369 -DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
G +L+ + +D G YT A N G + L V++ S
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-23
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV--QHDF 691
P F L +I EG + CRV G+P + WF +G ++ S + +
Sbjct: 7 GAPFFEMKLKHY-KIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
G +L T D G Y A N G + L V++ +
Sbjct: 64 GTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-22
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITTK 556
+ P F L++ + EG F+CR+ G+P K+ WF++ K + S +
Sbjct: 4 GSSGAPFFEMKLKHY-KIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQR 60
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
G ++ + +D+G Y A N G T + ++
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFG 106
K K + + E F C++ +P K+ WFK+G+ ++ I G
Sbjct: 12 EMKLKHYK-IFEGMPVTFTCRVAGNPKP------KIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+L + +D G YT A N G L
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 48/230 (20%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRN--EKPLEDSSRITTKHDFG 560
+ + G++ F C+ GD K + WF EK + RI+ +
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ--VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 561 YV-AMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ + + +D GIY C T G T ++KI
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI---------------------- 97
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
++K +F T E EG+ A C VV W G +
Sbjct: 98 --------------FQKLMFKNAPTPQ-EFKEGEDAVIVCDVV--SSLPPTIIWKHKGRD 140
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ + L I D G Y C+ A ++ ++V
Sbjct: 141 VILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-25
Identities = 33/232 (14%), Positives = 54/232 (23%), Gaps = 47/232 (20%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN---VPIKSGSRFTETNNF 238
+ EI G+ F C+ + + WF N + N+
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
L I +D+G+Y C G + V
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNV----------------------- 95
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
+ Q +F E + A V + W G +
Sbjct: 96 ------------KIFQKLMFKNAPTPQEFKEGEDAVIVCD--VVSSLPPTIIWKHKGRDV 141
Query: 359 QASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + + Y L + D GTY C + + V
Sbjct: 142 ILKKDVRFIVLSN-NY--LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 4e-21
Identities = 40/235 (17%), Positives = 61/235 (25%), Gaps = 61/235 (25%)
Query: 53 VTKPKSIENLRERGHAHFECK-----LEPVTDSNLKVEWFK-NGRPVTIG-HRFRPIHDF 105
P E + F C+ + + WF NG ++ R + +
Sbjct: 6 DIVPSQGE-ISVGESKFFLCQVAGDAKDK------DISWFSPNGEKLSPNQQRISVVWND 58
Query: 106 GYV-ALDIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQY 163
L I + +D+G Y C G E +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV----------------------- 95
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223
Q +F + E KEG+ A C VS + W H
Sbjct: 96 ---------------KIFQKLMFKNAPTPQEFKEGEDAVIVCD--VVSSLPPTIIWKHKG 138
Query: 224 VPI--KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ K RF +N L I D G Y C + ++ V
Sbjct: 139 RDVILKKDVRFIVLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 9e-13
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHD 558
Q+ +F + +EG++A C V + W + + + R +
Sbjct: 98 FQKLMFKNAPTPQE-FKEGEDAVIVCD--VVSSLPPTIIWKHKGRDVILKKDVRFIVLSN 154
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
Y + + ++ DEG Y C+ + +++
Sbjct: 155 -NY--LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 9e-09
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 647 EIMEGQSAHYDCRVVPVGDP-TMRFEWF-VNGVELKMGS-RFHVQHDFGYV-TLDITKCV 702
EI G+S + C+V GD WF NG +L R V + TL I
Sbjct: 13 EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 70
Query: 703 PADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
D+G+Y C G +T ++K+ K +
Sbjct: 71 IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 50/342 (14%), Positives = 88/342 (25%), Gaps = 86/342 (25%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
VEW P + D L + +++GTY C L
Sbjct: 31 SVEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHL-- 83
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
Y+++ A + + + E Q A
Sbjct: 84 --------------------------------YVKDP---ARPWNVLAQEVVVFEDQDAL 108
Query: 203 FECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261
C + V P+ + ++ + GF I + S Y C A+
Sbjct: 109 LPCL-LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT---IHRAKFIQSQDYQCSAL 164
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
G+ V S ++ + ++ + P T
Sbjct: 165 MG-GRKVMSISIRLK-------------------------------VQKVIPGPPALTLV 192
Query: 322 MRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNG--VPIQASNRVSTMHDFGYVALNF 377
++ +AA A + V V N + I + + LN
Sbjct: 193 PAELVRIRGEAAQIVCSASSVDVN---FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL 249
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419
+ +G Y+C A N G+ TS V A +
Sbjct: 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHHHHH 291
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 1e-21
Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 43/231 (18%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGY 561
+ Q + V E ++A C + V R +PL + + G+
Sbjct: 89 ARPWNVLAQEV-VVFEDQDALLPCL-LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGF 146
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + Y C A G V + S+++K + +
Sbjct: 147 T---IHRAKFIQSQDYQCSALMG-GRKVMSISIRLKVQ-------------------KVI 183
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELK 680
P P T + + G++A C N +L
Sbjct: 184 PGP-----------PALTLVPAELV-RIRGEAAQIVCSAS--SVDVNFDVFLQHNNTKLA 229
Query: 681 MGSR--FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ + FH +TL++ + +G Y C A N G+ +S +V
Sbjct: 230 IPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 41/243 (16%), Positives = 64/243 (26%), Gaps = 52/243 (21%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLK--VEWFK-NGRPVTIGHRFRPIHDFGYVA 109
+ + + E A C +TD L+ V + GRP+ + G
Sbjct: 93 NVLAQEVV-VFEDQDALLPC---LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--- 145
Query: 110 LDIIDTIPEDSGTYTCRAVNLVG-FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
I S Y C A+ + L
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRL---------------------------- 177
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM--KVEWFHNNVPI 226
+++ P T G+ A C S + V HNN +
Sbjct: 178 ------KVQKVIPGPPALTLVPAELVRIRGEAAQIVCS---ASSVDVNFDVFLQHNNTKL 228
Query: 227 KSGSRFTETNNFGFVA--LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
+ NN L++ Q + +G Y+C A N G+ TS V
Sbjct: 229 AIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNSHH 288
Query: 285 TQH 287
H
Sbjct: 289 HHH 291
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 2e-18
Identities = 45/311 (14%), Positives = 82/311 (26%), Gaps = 42/311 (13%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
PV + ++ V G+ V W P + D L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCV----GNGS--VEWDGPPSP-----HWTLYSDGSSSIL 53
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQ-------- 427
+ +++GTY C + + L+V+ A E + + Q
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL 113
Query: 428 ---NLEDTSRFKRKEEEEVE----VTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480
LE R + + P ++ + + K +
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173
Query: 481 IRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVE 539
+L+ + P P T + G+ A C V
Sbjct: 174 SIRLKVQKVIPGP----------PALTLVPAEL-VRIRGEAAQIVCS--ASSVDVNFDVF 220
Query: 540 WFRNEKPLEDSSRITTKHDFGYVAMDL--SHVRAEDEGIYICKATNALGEAVTTASMKIK 597
N L + ++ + L V + G Y C A+N G+ T+ ++
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Query: 598 TKAGLQLETQH 608
AG H
Sbjct: 281 ESAGNSHHHHH 291
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 7e-17
Identities = 36/231 (15%), Positives = 59/231 (25%), Gaps = 54/231 (23%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PV + + V+ G C G+ + VEW P T D
Sbjct: 4 IPVIEPSVPEL-VVKPGATVTLRCV----GNGS--VEWDGPPSP-----HWTLYSDGSSS 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+ ++ ++ G Y C + +K PA
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD----------------------PA 89
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELKM 681
P + + E Q A C + V G L
Sbjct: 90 RPWNVLAQEVV--------------VFEDQDALLPCL-LTDPVLEAGVSLVRVRGRPLMR 134
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
+ + G I + S Y C A+ + +S + LKV+
Sbjct: 135 HTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV 182
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 9e-16
Identities = 33/225 (14%), Positives = 61/225 (27%), Gaps = 53/225 (23%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P+ S+ +K G C VEW P + +++ ++ L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVG------NGSVEWDGPPSP--HWTLYSDGSSS---IL 53
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+++G Y C + +L V
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDP------------------------- 88
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASN 362
A + +++ V E+Q A + + V+ +R G P+
Sbjct: 89 -----------ARPWNVLAQEVVVFEDQDALLPCL-LTDPVLEAGVSLVRVRGRPLMRHT 136
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
S G S Y C A+ G V S ++ +
Sbjct: 137 NYSFSPWHG---FTIHRAKFIQSQDYQCSALMG-GRKVMSISIRL 177
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 8e-06
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G + C EW + + + D L ++G
Sbjct: 16 VKPGATVTLRCVG------NGSVEW-----DGPPSPHWTLYSDGSSSILSTNNATFQNTG 64
Query: 708 VYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
Y C ++ L VK + + Q
Sbjct: 65 TYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE 98
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-25
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFG 239
P F SL + ++EGQ R+ P V W N P++ RF E G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEP----KPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I+ D+G YTC+AVN G L V +
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-25
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYV 373
P F + D V E Q R+ G+ K V+WLRN P++ R + + G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L D+G YTC+AVNE G + L V +
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-23
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-EDSSRITTKH 557
+K P F L + +V EG++ S R+ G+P V W RN +P+ D R +
Sbjct: 1 GSKAPPTFKVSLMDQ-SVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEA 57
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G + + D G Y CKA N G A ++++ +
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 5e-23
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHDFG 692
P F L + EGQ RV G+P W N ++ RF + + G
Sbjct: 4 APPTFKVSLMDQ-SVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I D+G Y CKA+N G L+V+ +
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-17
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTI-GHRFRPIHDFGY 107
+RE ++ +P V W +N +PV RF + G
Sbjct: 9 KVSLMDQS-VREGQDVIMSIRVQGEPKP------VVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
L I+ D+G YTC+AVN G + +A L+ RG
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 3e-25
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 54/242 (22%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED----SSRITTKHDF 559
+ + E SC G + +VEW ++ +++IT ++
Sbjct: 5 VTVHSSEPEVR-IPENNPVKLSCA--YSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 560 GYVAMD----LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
+ V ED G Y C + G + +K+
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV----------------- 104
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
P + S G A C G P + WF +
Sbjct: 105 -----------------LVPPSKPTVNI-PSSATIGNRAVLTCSEQ-DGSPPSEYTWFKD 145
Query: 676 GVELKMGSRFHVQHDFGYV-------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
G+ + + L +D+G Y C+A N G ++S ++++
Sbjct: 146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Query: 729 KS 730
++
Sbjct: 206 EA 207
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 35/242 (14%), Positives = 64/242 (26%), Gaps = 53/242 (21%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ +S I E C ++ +VEW + + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCA--YSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 243 --------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
+ ED+G YTC G + + +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL------------------- 102
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
V P A G + TW ++
Sbjct: 103 ----------------IVLVPPSKPTVNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKD 145
Query: 355 GVPIQASNRVS-TMHDFGYVA------LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G+ + + + + + YV L F D+G Y+C A N G +TS+ + +
Sbjct: 146 GIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Query: 408 ES 409
E+
Sbjct: 206 EA 207
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 87.7 bits (217), Expect = 8e-20
Identities = 37/241 (15%), Positives = 62/241 (25%), Gaps = 54/241 (22%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA-- 109
TV + + E C S+ +VEW + T + Y
Sbjct: 6 TVHSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 110 ------LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163
+ ED+GTYTC G + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVK------------------------ 99
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223
++ P T G RA C + WF +
Sbjct: 100 ------------VKLIVLVPPSKPTVNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKDG 146
Query: 224 VPIKSGSRFTETNNFGFV-------ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ + + + T + L D+G Y+C A N G +TS + +
Sbjct: 147 IVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Query: 277 S 277
+
Sbjct: 207 A 207
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-14
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + G A +C G P + WF++ + + + T
Sbjct: 107 PPSKPTVNIPS-SATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 563 AMD-------LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + A D G Y C+A N G +T+ +++++
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-25
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTE 234
AP F++ LK+C + EGQ +C + P ++ W N PI+ E
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTP----VPRITWLLNGQPIQYARSTCE 60
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I LPED G YTC A NALGQ S + VH
Sbjct: 61 AGVAE---LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 8e-24
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
+ AP F+ ++D V E Q + + G ++TWL NG PIQ +
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARSTC--- 59
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ G L+ + PED GTYTC A N LG+ S+ + V
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-21
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P F+ L++ AV EG++ C + G P ++ W N +P++ + + G
Sbjct: 12 PSFSSVLKDC-AVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARST---CEAGVAE 65
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + ED G Y C A NALG+ +A + +
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-20
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P F+ +L ++EGQ C V G P R W +NG ++ + G
Sbjct: 10 VAPSFSSVLKDC-AVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARSTC---EAGV 63
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L I +P D G Y C A N G+ S + V
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 6e-15
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 68 AHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY 123
+C + P ++ W NG+P+ + G L I D +PED GTY
Sbjct: 29 FVLQCSVRGTPVP------RITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTY 79
Query: 124 TCRAVNLVGFAEVQATL 140
TC A N +G A +
Sbjct: 80 TCLAENALGQVSCSAWV 96
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-25
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 39/167 (23%)
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177
+ SG+ +N A L+ E E
Sbjct: 8 KASGSSPTSPINANKVENEDAFLE--------------------------------EVAE 35
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFT-E 234
E P FT ++ + E+ EG A F+C++ P +V WF ++ P+K F +
Sbjct: 36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYP----DPEVMWFKDDNPVKESRHFQID 91
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ G +L I + +D YTC+AVN+LG+A + LLV +
Sbjct: 92 YDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-25
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Query: 275 VHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334
+ + S ++E + E+ P FT+ + D+ V E AA
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 335 FEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAV 393
F+ ++ G +V W ++ P++ S +D G +L +D YTC+AV
Sbjct: 61 FDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 394 NELGEAVTSSTLFVESKAS 412
N LGEA ++ L VE+
Sbjct: 119 NSLGEATCTAELLVETMGK 137
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 9e-24
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
+ A E+ + KP FT+ + E++EG +A +DC+V G P WF +
Sbjct: 25 NEDAFLEEVAEEKPHVKPYFTKTIL-DMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNP 81
Query: 679 LKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+K F + +D G +L I++ D Y CKA+N GEA + L V++
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEG 141
Query: 738 SLQPDAWKKIQLK 750
+ + ++ + +
Sbjct: 142 EGEGEEDEEEEEE 154
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 3e-22
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FG 560
+P FTK + +++ V EG A F C++ G P +V WF+++ P+++S +D G
Sbjct: 40 VKPYFTKTILDME-VVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ +S V +D+ Y CKA N+LGEA TA + ++T + EG + +E E+
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMG--KEGEGEGEGEEDEEEEEE 154
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHD-FGY 107
+E + E A F+CK+ +P +V WFK+ PV F+ +D G
Sbjct: 45 TKTILDME-VVEGSAARFDCKVEGYPDP------EVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+L I + +D YTC+AVN +G A A L
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-24
Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 59/233 (25%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF----TETNN 237
+ + +GQ C V ++W + +++ + +E +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCS---VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
GF L + D+G Y C+ + ++ L
Sbjct: 59 IGF--LSLKSVERSDAGRYWCQVEDGGETEISQPVWL----------------------- 93
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGV 356
TV P FT +D+ V N VG + + + W R
Sbjct: 94 -------------TVEGVPFFTVEPKDLAVPPNAPFQLSCE--AVGPPEPVTIVWWRGTT 138
Query: 357 PIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVE 408
I T S ++C A N G A + + T+ ++
Sbjct: 139 KIGGPAPSP---------SVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 3e-24
Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 54/230 (23%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ V +G+ +C G ++W ++ +++ ++ +
Sbjct: 3 LKLMGAPVKL-TVSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 564 MDL--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
L V D G Y C+ + ++ L +E
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEIS-------QPVWLTVE---------------- 96
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELK 680
P FT + C VG P + W+ ++
Sbjct: 97 ------------GVPFFTVEPKDL-AVPPNAPFQLSCEA--VGPPEPVTIVWWRGTTKIG 141
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
L++T S ++ C+A N G A S T ++ ++
Sbjct: 142 -------GPAPSPSVLNVTG--VTQSTMFSCEAHNLKGLASSRTATVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 6e-18
Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 71/235 (30%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+ P + + + C +E P ++W K+G V + +
Sbjct: 6 MGAPVKLT-VSQGQPVKLNCSVEGMEEPD------IQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 109 --ALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLE 165
L + D+G Y C+ + L G
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG--------------------- 97
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFH 221
P FT K+ + C PV+ + W+
Sbjct: 98 -----------------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT-----IVWWR 135
Query: 222 NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
I + L++ S +++C A N G A +S VH
Sbjct: 136 GTTKIGGPAPSPSV-------LNVTG--VTQSTMFSCEAHNLKGLA-SSRTATVH 180
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV- 373
+ V++ Q G + + W+++G +Q +++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 374 -ALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVES 409
L+ K D+G Y C+ + ++ L VE
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV--TLDITKCVPA 704
+ +GQ +C V G +W +G ++ + ++ + L + +
Sbjct: 13 TVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 705 DSGVYMCKAINRAGEAVSST-SLKVKSKSDIVSE 737
D+G Y C+ + +S L V+ E
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE 104
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 61/253 (24%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR-----------NEKPLEDSS 551
+ ++ V E ++ +C G + +VEW N + +
Sbjct: 1 KGSVYTAQSDVQ-VPENESIKLTCT--YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Query: 552 RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
T G + S V +D G Y C + G+ S+ +
Sbjct: 58 DRVTFSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV------------- 101
Query: 612 LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFE 671
P + S + G A C G P +
Sbjct: 102 ---------------------LVPPSKPTISV-PSSVTIGNRAVLTCSEH-DGSPPSEYS 138
Query: 672 WFVNGVELKMGSRFHVQHDFGYV--------TLDITKCVPADSGVYMCKAINRAGEAVSS 723
WF +G+ + + L DSG Y C+A N G A+ S
Sbjct: 139 WFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS 198
Query: 724 TSLKVKSKSDIVS 736
+ + + V
Sbjct: 199 EAAHMDAVELNVG 211
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 8e-23
Identities = 33/245 (13%), Positives = 63/245 (25%), Gaps = 56/245 (22%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRL--IPV-------SDNTMKVEWFHNNVPIKSGSRFTE 234
T+ + ++ E + C + +N+ +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
++ G + +D+G YTC GQ ++ +
Sbjct: 62 FSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL------------------- 99
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
TV P V A G + +W ++
Sbjct: 100 ----------------TVLVPPSKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKD 142
Query: 355 GVPIQASNRVSTMHDFGYVA--------LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406
G+ + ++ T L F DSG Y C+A N G A+ S
Sbjct: 143 GISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Query: 407 VESKA 411
+++
Sbjct: 203 MDAVE 207
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-16
Identities = 37/241 (15%), Positives = 59/241 (24%), Gaps = 55/241 (22%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT--------IGHRFRPIH 103
+V +S + E C S+ +VEW T I +
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYS--GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 104 DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163
F + +D+G YTC G + ++ +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH-------------------LTV 101
Query: 164 LEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN 223
L P T + G RA C + WF +
Sbjct: 102 LV-----------------PPSKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDG 143
Query: 224 VPIKSGSRFTETNNFGFVA--------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + + L DSG Y C+A N G A+ S +
Sbjct: 144 ISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Query: 276 H 276
Sbjct: 204 D 204
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 46/342 (13%), Positives = 81/342 (23%), Gaps = 83/342 (24%)
Query: 76 PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT-YTCRAVNLVGFA 134
D + V W K G+ +R + + L I + DS Y C G
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNRR--VKNG---DLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 135 EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194
+ + P
Sbjct: 117 VQGI-------------------------------------VRSHIRKPPSCIPETYELG 139
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
+ C I + + + W+ NN + + L I EDSG
Sbjct: 140 THDKYGIDLYCG-ILYAKHYNNITWYKNNQELIIDGTKYSQSG---QNLIIHNPELEDSG 195
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ 314
Y C + + ++ H
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH--------------------------- 228
Query: 315 APVFTQPMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNGVPIQASNR-----VSTM 367
I+V + A+ A + + + W I + +++
Sbjct: 229 -RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSS 287
Query: 368 HDFGYVALNFKYTYPEDSG-TYTCRAVNELGEAVTSSTLFVE 408
L F+ E G TYTCR N + ++T+ +E
Sbjct: 288 GGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 94.1 bits (233), Expect = 5e-21
Identities = 25/237 (10%), Positives = 57/237 (24%), Gaps = 41/237 (17%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
++ P + + C I + W++N + L ++
Sbjct: 126 RKPPSCIPETYEL-GTHDKYGIDLYCG-ILYAKHYNNITWYKNNQELIIDGTKYSQSG-- 181
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
+ + + ED G Y C + + +
Sbjct: 182 -QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL-------------TVIPSQD 227
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVE 678
+ +P + G+ A+ C V + + +W
Sbjct: 228 HRFKLILDP---------------KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272
Query: 679 LKMG-----SRFHVQHDFGYVTLDITKCVPADSG-VYMCKAINRAGEAVSSTSLKVK 729
+ S TL G Y C+ N + +T++ ++
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 4e-16
Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 41/232 (17%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
+ ++ C + + W+KN + + I + L
Sbjct: 130 SCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGT-KYSQSGQN--LI 185
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171
I + EDSG Y C + ++ + T +
Sbjct: 186 IHNPELEDSGRYDCYVHYDDVRIKNDIV---------VSRCKILTVIPS----------- 225
Query: 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECR--LIPVSDNTMKVEWFHNNVPIKSG 229
+ G+ A+ C + + + ++W + + I
Sbjct: 226 ---------QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276
Query: 230 -----SRFTETNNFGFVALDIMQCLPEDSG-VYTCRAVNALGQAVTSGNLLV 275
S T + L E G YTCR N + +++
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 7e-15
Identities = 30/230 (13%), Positives = 48/230 (20%), Gaps = 53/230 (23%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVS-------DNTMKVEWFHNNVPIKSGSRFTETN 236
N G+ +C I S D V W + +R +
Sbjct: 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89
Query: 237 NFGFVALDIMQCLPEDSG-VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQ 295
+ L I DS Y C G V
Sbjct: 90 D-----LWIANYTSNDSHRRYLCTVTTKNGDCV--------------------------- 117
Query: 296 QLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355
I+ + + P ++ + I +TW +N
Sbjct: 118 ---------QGIVRSHIRKPPSCIPETYELGTHDKYGIDLY-CGILYAKHYNNITWYKNN 167
Query: 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ + L EDSG Y C + +
Sbjct: 168 QELIIDGTKYSQSG---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-12
Identities = 28/249 (11%), Positives = 54/249 (21%), Gaps = 51/249 (20%)
Query: 516 VEEGKNAHFSCRLIP-------VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568
G+ C I D V W + K K+ ++ ++
Sbjct: 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR-PLNRRVKNGDLWI---ANY 96
Query: 569 VRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQE 628
+ Y+C T G+ V ++ +
Sbjct: 97 TSNDSHRRYLCTVTTKNGDCVQGI---------VRSHIR--------------------- 126
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
+ P + C ++ W+ N EL + + Q
Sbjct: 127 -----KPPSCIPETY-ELGTHDKYGIDLYCGILY-AKHYNNITWYKNNQELIIDGTKYSQ 179
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAWKKIQ 748
L I DSG Y C + + ++
Sbjct: 180 SG---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 749 LKEAEMNKP 757
+ +P
Sbjct: 237 KINVTIGEP 245
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 2e-11
Identities = 41/337 (12%), Positives = 85/337 (25%), Gaps = 48/337 (14%)
Query: 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP-------VGDSK 346
+ + + + A + + I D
Sbjct: 8 ITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKD 67
Query: 347 LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGT-YTCRAVNELGEAVTSSTL 405
V W + G + NR L DS Y C + G+ V
Sbjct: 68 NVVNWEKIGKTRRPLNRRVKNG-----DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR 122
Query: 406 FVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT-------VQLNGP 458
K + E ++ + + T + ++G
Sbjct: 123 SHIRKPPSCIPETYELGTHDKYGIDLYCGI-------LYAKHYNNITWYKNNQELIIDGT 175
Query: 459 TELVEGEGTIITDTQH----------PKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTK 508
G+ II + + +I+ K V + + +
Sbjct: 176 KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILD 235
Query: 509 PLQNIDAVEEGKNAHFSCR--LIPVGDPTLKVEWFRNEKPLEDS-----SRITTKHDFGY 561
P N V G+ A+ +C + + ++W + S +T+
Sbjct: 236 PKIN---VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITE 292
Query: 562 VAMDLSHVRAEDEG-IYICKATNALGEAVTTASMKIK 597
+ +V E G Y C+ N + T ++ ++
Sbjct: 293 ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-24
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN 236
++ A FT L N +++E A F C+ V W + +++ + +
Sbjct: 2 SSGSSGANCFTEELTNLQVEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+ L I DS YTC GQA + LLV ++S
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-22
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S A FT+ + ++ V E A F + VTW + + ++AS + +
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGLT 62
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ L DS TYTC G+A + + L V+ + S
Sbjct: 63 LRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-19
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
+ FT+ L N+ VEE A F+C+ P V W + L S + +
Sbjct: 4 GSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + +S + D Y C G+A + A + ++ +
Sbjct: 60 GLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGR 96
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-17
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
FT+ LT ++ E +A + C+ P W +EL+ + + +
Sbjct: 9 NCFTEELTNL-QVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK-SDIVS 736
L I+ ADS Y C G+A S L V+ + S S
Sbjct: 65 LTISALEKADSDTYTCD----IGQAQSRAQLLVQGRRSGPSS 102
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 9e-15
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ +++ + E+G A F CK V W K + + +P + + L I
Sbjct: 12 TEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
DS TYTC G A+ +A L +G
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQG 95
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 99.2 bits (246), Expect = 8e-24
Identities = 33/213 (15%), Positives = 55/213 (25%), Gaps = 27/213 (12%)
Query: 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIP 117
+ + +E G C E + WFK+G+ + + + G A D
Sbjct: 11 KVYDYQEDGSVLLTCDAEAKN-----ITWFKDGKMIGFLTEDKKKWNLGSNAKD------ 59
Query: 118 EDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177
G Y C+ LQ G + + + +D K E
Sbjct: 60 -PRGMYQCKGSQ-----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEE 113
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
+ S+ G C P ++ W HN+ I +
Sbjct: 114 MGGITQTPYKVSI------SGTTVILTCPQYP----GSEILWQHNDKNIGGDEDDKNIGS 163
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
E SG Y C + +
Sbjct: 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 98.4 bits (244), Expect = 2e-23
Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 27/223 (12%)
Query: 508 KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
L + +E + +C + WF++ K + + K + G A D
Sbjct: 7 NHLVKVYDYQEDGSVLLTC-----DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-- 59
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQ 627
G+Y CK + + + + + ++ + +
Sbjct: 60 -----PRGMYQCKGSQNKSKPLQVYYR---------MGSADDAKKDAAKKDDAKKDDAKK 105
Query: 628 EPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV 687
+ E+ I G + C P W N +
Sbjct: 106 DGSDGNEEMGGITQTPYKVSI-SGTTVILTCPQ----YPGSEILWQHNDKNIGGDEDDKN 160
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
SG Y+C E + L+ +
Sbjct: 161 IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 1e-21
Identities = 26/213 (12%), Positives = 54/213 (25%), Gaps = 26/213 (12%)
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
+K + +E C + WF + I + + N G A D
Sbjct: 10 VKVYDYQEDGSVLLTC---DAEAKN--ITWFKDGKMIGFLTEDKKKWNLGSNAKD----- 59
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
G+Y C+ + + + + + ++ + +
Sbjct: 60 --PRGMYQCKGSQNKSKPLQVYYRMGSADDA---------KKDAAKKDDAKKDDAKKDGS 108
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
D + TQ + ++ P + + W N I +
Sbjct: 109 DGNEEMGGITQTPYKVSIS-GTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGS 163
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
+++ E SG Y C E
Sbjct: 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-10
Identities = 11/108 (10%), Positives = 21/108 (19%), Gaps = 4/108 (3%)
Query: 28 QNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWF 87
+ K+ + C P ++ + W
Sbjct: 91 DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSE----ILWQ 146
Query: 88 KNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135
N + + + I + E SG Y C
Sbjct: 147 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 6e-10
Identities = 13/105 (12%), Positives = 23/105 (21%), Gaps = 4/105 (3%)
Query: 487 TEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP 546
+ K D + + G +C P ++ W N+K
Sbjct: 96 DDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ----YPGSEILWQHNDKN 151
Query: 547 LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591
+ E G Y+C + E
Sbjct: 152 IGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-09
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 349 VTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+TW ++G I + G A + G Y C+ + L V
Sbjct: 32 ITWFKDGKMIGFLTEDKKKWNLGSNAK-------DPRGMYQCKGSQNKSK-----PLQVY 79
Query: 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPT 459
+ D + +AA + +D + EE+ Q + V ++G T
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTT 130
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 9e-24
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIK 227
+ +AP+F ++ ++ EG EC++ IP K+ W NN ++
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIP----PPKLFWKRNNEMVQ 57
Query: 228 SGSRFTET--NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ +N G V L I +D+G YT AVN G + L V ++ +
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-23
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
+AP+F + V E + E + K+ W RN +Q +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQ--ISAIPPPKLFWKRNNEMVQFN 59
Query: 362 -NRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+R+S D G V L K +D+G YT AVNE G ++ L V ++
Sbjct: 60 TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 4e-22
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH--V 687
P+F +++EG S +C++ P + W N ++ +
Sbjct: 10 HEHKRAPMFIYKPQSK-KVLEGDSVKLECQIS--AIPPPKLFWKRNNEMVQFNTDRISLY 66
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
Q + G VTL I D+G Y A+N AG +T L V ++ +
Sbjct: 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-21
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 488 EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL 547
H + K+ P+F Q+ V EG + C+ P K+ W RN + +
Sbjct: 3 HHHHHHSHEH---KRAPMFIYKPQSKK-VLEGDSVKLECQ--ISAIPPPKLFWKRNNEMV 56
Query: 548 E-DSSRITTKHD-FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ ++ RI+ D G V + + V +D G Y A N G + + +
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFG 106
+ KP+S + + E EC++ P K+ W +N V ++ + G
Sbjct: 19 IYKPQSKK-VLEGDSVKLECQISAIPPP------KLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
V L I D +D+G YT AVN G L
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-23
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
++ F +LK+ E+ EG A C +S V+W + N ++ G +++
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQE 59
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ L + P+DSG Y+C G TS L V +
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 7e-22
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S PV F + ++D+ V E AA + V W ++ ++ S +
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQE 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ L + P+DSG Y+C G+ TS+TL V +
Sbjct: 60 GAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-19
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
F + L++++ V EG A C + V+W L + + + + +
Sbjct: 9 VRFQEALKDLE-VLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + ++R +D G Y C G+ T+A++ +
Sbjct: 65 LVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-17
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
F + L E++EG +A C + V P +W L+ G ++ ++ + +
Sbjct: 9 VRFQEALKDL-EVLEGGAATLRCVLSSVAAPV---KWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L + P DSG Y C G+ +S +L V +
Sbjct: 65 LVVRNLRPQDSGRYSCS----FGDQTTSATLTVTAL 96
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 7e-16
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
K +E + E G A C ++ V+W + G ++ + + L +
Sbjct: 12 QEALKDLE-VLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ P+DSG Y+C + A +
Sbjct: 68 RNLRPQDSGRYSCSFGDQTTSATL 91
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 4e-23
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ A R + V E ++A F G+ VTWLR G + S R
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
D G Y+ N G+ TL ++
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-22
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVPIKSGSRFTET 235
TT A T ++ + EG+ A F C +P V W + + +R T
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVP------TVTWLRKGQVLSTSARHQVT 64
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+I D G Y+ N+ G+ L +
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 3e-22
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+++ V EG++A FSC G+P V W R + L S+R
Sbjct: 15 ARILTKPRSM-TVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++S V+A DEG Y N+ G+ ++ I+
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-20
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+ + EG+SA + C G+P W G L +R V
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
T +I+ +D G Y N G+ + +L ++
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-15
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+TKP+S+ + E A F C P V W + G+ ++ R +
Sbjct: 18 LTKPRSMT-VYEGESARFSCDTDGEPVP------TVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+I D G Y+ N G E + TL
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 9e-23
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT-ETN 236
P F +N I EG+ + ++ P V W+ N ++S +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP------DVSWYLNGRTVQSDDLHKMIVS 57
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279
G +L D+G Y C A N G+A + L V +K+
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-22
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TMHDFGY 372
P F Q ++ + E + + ++ G V+W NG +Q+ + + + G
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+L F+ D+G Y C A N GEA + L V +K
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 7e-22
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYV 694
P F Q+ I EG+ D +V G P W++NG ++ + + G
Sbjct: 6 PRFIQVPENM-SIDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+L +D+G Y C A NRAGEA + L V +K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-21
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFGYV 562
P F + +N+ ++EG+ ++ G P V W+ N + ++ + G
Sbjct: 6 PRFIQVPENMS-IDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++ VRA D G Y C A N GEA T + + K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-15
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGY 107
+ P+++ + E + K+ P V W+ NGR V + + + G
Sbjct: 9 IQVPENMS-IDEGRFCRMDFKVSGLPAP------DVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L D+G Y C A N G A L
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 6e-22
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT- 233
++ P F + + ++EG+ +C++ P + W + P++ S
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP------DLSWQLDGKPVRPDSAHKM 58
Query: 234 ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
G +L I D+G+YTC A N GQ S L+V +K+S
Sbjct: 59 LVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 9e-22
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH- 368
+ P F Q D+ V E + + ++ G ++W +G P++ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ G +L + D+G YTC A N G+ S L V +K
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKH 557
++ RP F + ++ V+EGK C++ G PT + W + KP+ S
Sbjct: 5 SSGFRPHFLQAPGDLT-VQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G ++ + V + D GIY C ATN G+ + + + K
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 4e-21
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
+P F Q + EG+ DC+V G PT W ++G ++ S +
Sbjct: 3 SGSSGFRPHFLQAPGDL-TVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKML 59
Query: 689 H-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ G +L I D+G+Y C A NRAG+ S L V +K
Sbjct: 60 VRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 9e-15
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIH-DFGY 107
+ P + ++E +CK+ P + W +G+PV + + + G
Sbjct: 13 LQAPGDLT-VQEGKLCRMDCKVSGLPTP------DLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L I D+G YTC A N G L
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-21
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S P Q D V ++ ++ G + TW++ IQ S + +
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENS 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L E G YT N+LG L V K
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-21
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETN 236
+ + P ++ +++ G+ V+ + W I+ N
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFG---KVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ L I+ E G YT N LG NL V K
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-21
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P Q ++ G+S +V G + W +++ V++
Sbjct: 6 SGPQIIQFPE-DQKVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I G Y N+ G + +L V K
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-20
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 498 NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH 557
++ P + ++ V G++ ++ G + W + K +++S + ++
Sbjct: 2 SSGSSGPQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + R E G Y N LG ++ + K
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 53 VTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P+ + +R K+ + W K + + + + L
Sbjct: 11 IQFPEDQK-VRAGESVELFGKVTGTQP----ITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
I+ E G YT N +G + Q L
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-21
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S V T+ ++ + V E ++ FE + + W G + +S+R
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + P D+G + ++L V ++
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSG 100
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 3e-21
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 179 TTTQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
+ + + T LK E+ EG+ FEC + + W + S SRF T
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATRQ 61
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
L + + P D+G + +L+V + +
Sbjct: 62 GRKYILVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSS 103
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-21
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
T+ L E++EG+S ++C + + W V G + SRF
Sbjct: 9 VGITKRLKTM-EVLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L + + P+D+G + S SL V+ +S S
Sbjct: 67 LVVREAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSS 103
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 7e-21
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
TK L+ ++ V EG++ F C + + W K + SSR
Sbjct: 9 VGITKRLKTME-VLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ + D G + + AS+ ++ ++G
Sbjct: 67 LVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSG 100
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-15
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ K++E + E FEC L ++ W G+ V RF+ L +
Sbjct: 12 TKRLKTME-VLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVV 69
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ P D+G L A +
Sbjct: 70 REAAPSDAGEVVFSVRGLTSKASL 93
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 3e-21
Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 57/223 (25%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
+ G +C L W + L++ + K + + G
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------TEFKVDSDDQWG 62
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C E + TA++++ +
Sbjct: 63 EYSCVFLP---EPMGTANIQL------------------------------------HGP 83
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNG------VELKMGSRFHVQ 688
P + + + I EG++A C+ P + W+ + SRF V
Sbjct: 84 PRVKAVKS-SEHINEGETAMLVCKSE--SVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 689 HDFGYVTLDITKCVPA-DSGVYMCKAINRAGEAVSSTSLKVKS 730
G L I D G Y C + G + +L+V+S
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 1e-17
Identities = 30/235 (12%), Positives = 52/235 (22%), Gaps = 64/235 (27%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+FTT G + C L + W V +K + +
Sbjct: 4 TVFTTV-----EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------T 51
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+ + G Y+C +
Sbjct: 52 EFKVDSDDQWGEYSCVFLPEPMGTANI--------------------------------- 78
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF--EARLIPVGDSKLKVTWLRNGVPIQ-- 359
+ P H+ E + A ++ +P W +
Sbjct: 79 -------QLHGPPRVKAVKSSEHINEGETAMLVCKSESVP---PVTDWAWYKITDSEDKA 128
Query: 360 ----ASNRVSTMHDFGYVALNFKY-TYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ +R G L+ + D G Y C + G TL V S
Sbjct: 129 LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-16
Identities = 34/219 (15%), Positives = 51/219 (23%), Gaps = 60/219 (27%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C L W K G + + + G Y+C
Sbjct: 16 ILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDDQWGEYSCVF 68
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
+ A +Q G P
Sbjct: 69 LPEPM---GTANIQLHG--------------------------------------PPRVK 87
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNN----VPIKSGS--RFTETNNFG 239
+ I EG+ A C+ W+ + +GS RF +++ G
Sbjct: 88 AVKSSEHINEGETAMLVCK---SESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144
Query: 240 FVALDIMQCLPE-DSGVYTCRAVNALGQAVTSGNLLVHS 277
L I E D G Y C ++ G L V S
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 9e-09
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPA 704
T+ G C + W GV LK + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDD 59
Query: 705 DSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
G Y C + E + + ++++ + +
Sbjct: 60 QWGEYSCVFLP---EPMGTANIQLHGPPRVKAVK 90
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-07
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLE------DSSRITTK 556
P + + EG+ A C+ P W++ + SR
Sbjct: 84 PRVKAVKSSEH-INEGETAMLVCKS--ESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 557 HDFGYVAMDLSHVRAE-DEGIYICKATNALGEAVTTASMKIKT 598
G + + ++ E D G Y C T++ G ++++++
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 15/107 (14%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
VFT L WL+ GV ++
Sbjct: 4 TVFTTV-----EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------T 51
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAA 422
FK + G Y+C + E + ++ + + ++ +E
Sbjct: 52 EFKVDSDDQWGEYSCVFLP---EPMGTANIQLHGPPRVKAVKSSEHI 95
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFKNGRPVTIG------HRFRPI 102
V KS E++ E A CK E PVT W+K RF
Sbjct: 85 RVKAVKSSEHINEGETAMLVCKSESVPPVT----DWAWYKITDSEDKALMNGSESRFFVS 140
Query: 103 HDFGYVALDIID-TIPEDSGTYTCRAVNLVGFAEVQATLQ 141
G L I + + D G Y C + G + TL+
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 94.9 bits (235), Expect = 3e-21
Identities = 45/358 (12%), Positives = 88/358 (24%), Gaps = 90/358 (25%)
Query: 75 EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV-----ALDIIDTIPEDSGTYTCRAVN 129
+ L + W+ + + + L T+ D+G YTC N
Sbjct: 41 STAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRN 100
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
++V L+ + + +
Sbjct: 101 TTYCSKVAFPLE----------------------------------VVQKDSCFNSPMKL 126
Query: 190 LKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIM 246
+ E C + S + W+ I++ + L +
Sbjct: 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFL 182
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTS 306
L ++G YTC E L+R ++
Sbjct: 183 IALISNNGNYTCVVTY--------------------PENGRTFHLTRTLTVK-------- 214
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHF-----EARLIPVGDSKLKVTWLRNGVPIQAS 361
++ + P D V E + + DS+ +V W +G
Sbjct: 215 VVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDI 274
Query: 362 NR----------VSTMHDFGYVALNFKYTYPED-SGTYTCRAVNELGEAVTSSTLFVE 408
T + L+ K ED +Y C A + GE ++ + +
Sbjct: 275 TIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 6e-19
Identities = 59/322 (18%), Positives = 90/322 (27%), Gaps = 45/322 (13%)
Query: 320 QPMRDIHVAENQAAHFEARLI---------PVGDSKLKVTWLRNG------VPIQASNRV 364
MR I V E++ A + L + L + W PI
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQ 424
+ + V L F+ T D+G YTC N + + L V K S +
Sbjct: 72 NRISKEKDV-LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 425 KIQNLEDTSRFKRKEEEEVEVTQQPSFT------VQLNGPTELVEGEGTIITDTQ----- 473
+ + +P+ T N + EG
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNG 190
Query: 474 ----HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDA-VEEGKNAHFSCR- 527
E R T V PV P ++ E G+ C
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250
Query: 528 -LIPVGDPTLKVEWFRNEKPLEDS--------SRITTKHDFGYVAMDL--SHVRAEDEGI 576
+ D +V W + K +D S ++ + L V +ED
Sbjct: 251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKR 310
Query: 577 -YICKATNALGEAVTTASMKIK 597
Y+C A +A GE A +K K
Sbjct: 311 SYVCHARSAKGEVAKAAKVKQK 332
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 85.3 bits (210), Expect = 5e-18
Identities = 26/230 (11%), Positives = 56/230 (24%), Gaps = 45/230 (19%)
Query: 516 VEEGKNAHFSCRLI---PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
E +C + + W+ +++ + + + +
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFLIALIS 187
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
+ G Y C T + + ++ + P +
Sbjct: 188 NNGNYTCVVTYPENGRTFHLTRTL------TVKVVGSPKNAVPPVIHSPNDHV------- 234
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSRFHVQH- 689
E G+ C V + D W ++G + + +
Sbjct: 235 ------------VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE 282
Query: 690 ---------DFGYVTLDITKCVPADSGV-YMCKAINRAGEAVSSTSLKVK 729
+ L I K D Y+C A + GE + +K K
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-12
Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 58/241 (24%)
Query: 516 VEEGKNAHFSCRLI---------PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD- 565
V E + A C L L + W+ + + I + ++ +
Sbjct: 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78
Query: 566 ----LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
D G Y C N + +++ K
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD-------------------SC 119
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWFVNGVE 678
+ + P + +E C V W++ +
Sbjct: 120 FNSPMKLPVHK--------------LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK 165
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI----NRAGEAVSSTSLKVKSKSDI 734
++ + + L + +++G Y C R + ++KV
Sbjct: 166 IQNFNNVIPEGM----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN 221
Query: 735 V 735
Sbjct: 222 A 222
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-12
Identities = 34/280 (12%), Positives = 61/280 (21%), Gaps = 59/280 (21%)
Query: 189 SLKNCEIKEGQRAHFECRLI---------PVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+++ ++ E + A +C L + + W+
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 240 FV-----ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
+ L L D+G YTC N + + L V K S
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLY 132
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
+ R ++ + T +TW
Sbjct: 133 IEYGIQRI-TCPNVDGYFPSSVKPT-----------------------------ITWYMG 162
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
IQ N V L+F ++G YTC T +L
Sbjct: 163 CYKIQNFNNVIPEGMN----LSFLIALISNNGNYTCVVTYPENGRTFHLT------RTLT 212
Query: 415 LDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ 454
+ + + E +
Sbjct: 213 VKVVGSPKNAVPPVI-----HSPNDHVVYEKEPGEELLIP 247
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 648 IMEGQSAHYDCRVV---------PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---- 694
+ E + A C + + W+ + + + + +
Sbjct: 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78
Query: 695 -TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
L + D+G Y C N + + L+V K + ++
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-21
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
AP T + + + ++ G+ ++ W ++ + + +
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD-- 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
G L + ED G YTC+A + LG A + +E
Sbjct: 62 GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-20
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
AP T +L+N G+ C P ++ WF +N + S +
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPP------QIMWFKDNETLVEDSGIVLKDGN 63
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L I + ED G+YTC+A + LG A ++
Sbjct: 64 R--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 3e-20
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P T L+N G++ SC G+P ++ WF++ + L + S I K G
Sbjct: 11 PTITGNLENQ-TTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD--GNRN 65
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + VR EDEG+Y C+A + LG A A I+
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-18
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
P T L G+S C G+P + WF + L S ++ G
Sbjct: 9 VAPTITGNLE-NQTTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKD--GN 63
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L I + D G+Y C+A + G A ++ + +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
++ WFK+ + + G L I ED G YTC+A +++G A+V+A
Sbjct: 41 QIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
Query: 143 RGS 145
G+
Sbjct: 99 EGA 101
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 6e-21
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
++ FT LK E EG A +C L V+ VEW ++ G R++ +
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGT 60
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I D+G Y+C GQ TS L V
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLTVR 93
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 8e-21
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 19/121 (15%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S FTQ ++ +E A + L V V W + ++ R S D
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGTR 61
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDT 432
L D+G Y+C G+ TS+TL V + + +
Sbjct: 62 CELQIHDLSVADAGEYSCMC----GQERTSATLTVR-----------ALPARFTEGSGPS 106
Query: 433 S 433
S
Sbjct: 107 S 107
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-18
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
FTQ L E EG +A C + + W L+ G R+ ++ D
Sbjct: 9 ARFTQDLKTK-EASEGATATLQCELSK--VAPVE--WKKGPETLRDGGRYSLKQDGTRCE 63
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
L I AD+G Y C G+ +S +L V++ +E P
Sbjct: 64 LQIHDLSVADAGEYSC----MCGQERTSATLTVRALPARFTEGSGP 105
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-18
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
FT+ L+ EG A C L VEW + + L D R + K D
Sbjct: 9 ARFTQDLKTK-EASEGATATLQCEL----SKVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPE 610
+ + + D G Y C G+ T+A++ ++ E P
Sbjct: 64 LQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
K+ E E A +C+L V VEW K + G R+ D L I
Sbjct: 12 TQDLKTKE-ASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
D D+G Y+C A +
Sbjct: 67 HDLSVADAGEYSCMCGQERTSATL 90
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-21
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-ETNNFGF 240
+ L++ +++EG A F CR+ P N V WF + P+ + + G+
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISP--ANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
L + Q +DSG A G S L V K S+ + +
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 7e-20
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDF 559
+R + L+++D V+EG +A F CR+ V WF ++ PL +
Sbjct: 11 GRRVHIIEDLEDVD-VQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
GY + L + +D G +A G+ +A++++ K + + G
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSSG 115
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-19
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TMHDFGY 372
+ + + D+ V E +A F R+ + V W + P+ A+ GY
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
L + +DSGT A G+ S+ L V K S+ +
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HD 690
Q + + L ++ EG SA + CR+ WF++ L +
Sbjct: 10 QGRRVHIIEDLEDV-DVQEGSSATFRCRIS--PANYEPVHWFLDKTPLHANELNEIDAQP 66
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
GY L + + DSG + AG+ +S +L+V K + S S
Sbjct: 67 GGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRS 110
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 9e-12
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGYVA 109
+ + ++ ++E A F C++ V WF + P+ GY
Sbjct: 17 IEDLEDVD-VQEGSSATFRCRISPANYEP----VHWFLDKTPLHANELNEIDAQPGGYHV 71
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETG 157
L + +DSGT A G A L+ + + + +G
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSSG 115
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 7e-21
Identities = 44/337 (13%), Positives = 76/337 (22%), Gaps = 107/337 (31%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
C++ + + +WF NG + I DSG Y C+
Sbjct: 21 LHCEVLHLP-GSSSTQWFLNGTATQTSTP----------SYRITSASVNDSGEYRCQRGL 69
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
S +++ +I
Sbjct: 70 ---------------------SGRSDPIQLEIHR--------------------GWLLLQ 88
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
+ + EG+ C V ++ N K + L I++
Sbjct: 89 VSSRVFTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSN--------LTILKTN 139
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIE 309
+G Y C + ++ V
Sbjct: 140 ISHNGTYHCSGMGKHRYTSAGISVTVKELFP----------------------------- 170
Query: 310 DTVSQAPVFTQPMRDIHVAENQAAHF--EARLIPV-GDSKLKVTWLRNGVPIQASNRVST 366
APV + E E +L+ +L ++ ++ N S
Sbjct: 171 -----APVLNAS-VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE 224
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
EDSG Y C A E G + S
Sbjct: 225 --------YQILTARREDSGLYWCEAATEDGNVLKRS 253
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 3e-17
Identities = 27/225 (12%), Positives = 59/225 (26%), Gaps = 60/225 (26%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ T + + + C ++ + ++ +WF N ++ + +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSS-STQWFLNGTATQTSTP----------SY 50
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
I DSG Y C+ +
Sbjct: 51 RITSASVNDSGEYRCQRGLS---------------------------------------G 71
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
R+ I+ + + + Q + E + V + RNG + +
Sbjct: 72 RSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHW 129
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
S L T +GTY C + + ++ V+
Sbjct: 130 NSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 4e-16
Identities = 30/216 (13%), Positives = 54/216 (25%), Gaps = 56/216 (25%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
EG+ C V ++RN K + + + G
Sbjct: 94 FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSNLT--------ILKTNISHNG 144
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C S+ + +E +
Sbjct: 145 TYHCSGMGKHRYTSAGISVTV------------------------------KEL---FPA 171
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
P+ + TS ++EG C + F +++ L+ +
Sbjct: 172 PVLN--ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS------ 223
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
I DSG+Y C+A G V S ++
Sbjct: 224 --EYQILTARREDSGLYWCEAATEDG-NVLKRSPEL 256
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 7e-16
Identities = 30/227 (13%), Positives = 54/227 (23%), Gaps = 61/227 (26%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ V T + +V + + C + + +WF N + S+
Sbjct: 1 KAVITLQPPWV-SVFQEETVTLHCE-VLHLPGSSSTQWFLNGTATQTSTPSYR------- 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
++ D G Y C+ + IQ
Sbjct: 52 ---ITSASVNDSGEYRCQRGLSGRSD-------------------------PIQLEIHRG 83
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ Q EG+ C ++ NG K
Sbjct: 84 WLLLQVSS---------------RVFTEGEPLALRCHAWK-DKLVYNVLYYRNGKAFKFF 127
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I K + +G Y C + + + S+ VK
Sbjct: 128 HWNS--------NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 9e-13
Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 56/198 (28%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
V +++NG+ H + I+ T +GTY C + + ++
Sbjct: 114 NVLYYRNGKAFKFFHWNSNLT--------ILKTNISHNGTYHCSGMGKHRYTSAGISV-- 163
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
++ L AP+ S+ + + EG
Sbjct: 164 -----------------TVKELF----------------PAPVLNASVTS-PLLEGNLVT 189
Query: 203 FECR---LIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259
C L+ + ++ + ++ + +E I+ EDSG+Y C
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCE 241
Query: 260 AVNALGQAVT-SGNLLVH 276
A G + S L +
Sbjct: 242 AATEDGNVLKRSPELELQ 259
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCR---LIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
PV + + EG SC L+ L ++ K L + +
Sbjct: 170 PAPVLNASVT--SPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--- 224
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ R ED G+Y C+A G V S ++
Sbjct: 225 -----YQILTARREDSGLYWCEAATEDG-NVLKRSPEL 256
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
+ + ++ C V+ + + +WF+NG + + + IT D
Sbjct: 11 VSVFQEETVTLHCEVLHLPGSS-STQWFLNGTATQTSTP----------SYRITSASVND 59
Query: 706 SGVYMCKAINRAGEA-----VSSTSLKVKSKSDIVSE 737
SG Y C+ + L ++ S + +E
Sbjct: 60 SGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTE 96
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 8e-21
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN 237
++ L++ + G+ C +S V W + I+ ++
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCE 59
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
L I +D+G YTC + A
Sbjct: 60 GTMAMLVIRGASLKDAGEYTCEVEASKSTA 89
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-19
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+ S P +P+ D VA + + + V WL++ I+ S + + +
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCE 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + +D+G YTC A +L VE KAS
Sbjct: 60 GTMAMLVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKAS 98
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-17
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
KPL++ V G++ C L T V W ++ K + S + +
Sbjct: 9 AAIIKPLEDQW-VAPGEDVELRCEL--SRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTT 591
+ + +D G Y C+ + A
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKSTASLH 92
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 5e-16
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ L + G+ C + G P W + ++ ++ V +
Sbjct: 9 AAIIKPLEDQ-WVAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
L I D+G Y C+ A SL V+ K+
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKAS 98
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 8e-15
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + + C+ ++ + V W K+ + + ++ + + L I
Sbjct: 12 IKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+D+G YTC A +
Sbjct: 68 RGASLKDAGEYTCEVEASKSTASL 91
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-20
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 178 ETTTQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN 236
+ + + + + +K ++A F+C VSD + +W+ N V ++ R T ++
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISH 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
F L I PED G YT
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-19
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF 559
+ + + + ++ V+ + A F C V D + +W++N + S RIT H
Sbjct: 5 SSGQLEVLQDIADLT-VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVG 60
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
+ + + VR EDEG Y
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 7e-19
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
S Q + D+ V + A F+ V D K+ W +NGV ++ S R++ H
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISH 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ L PED G YT S+ L
Sbjct: 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLE 97
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+ Q + + + A + C V D + +W+ NGVE++ R + H +
Sbjct: 8 QLEVLQDIADL-TVKAAEQAVFKCEV---SDEKVTGKWYKNGVEVRPSKRITISHVGRFH 63
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L I P D G Y A S L
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLE 97
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 55 KPKSIENLR-----ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
+ + ++++ A F+C+ V+D + +W+KNG V R H +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHK 64
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I D PED G YT +
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-20
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
P T+ + +IK G + E I P W +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAP----DPTATWTVGDSGAALAPELLVDAKSST 57
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ DSG Y + N LG+ ++V
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-19
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
KP +I G + + + + G P W V + V
Sbjct: 2 KPKILTASR-KIKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
++ ADSG Y K N GE + + V+
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-19
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P + I ++ G + I G P W + + +
Sbjct: 2 KPKILTASRKI-KIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + D G Y K N LGE + ++
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-19
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P R I + + E I G TW + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ F DSG Y + NELGE + V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-12
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 11/93 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
+T + I+ ++ + E P W +
Sbjct: 6 LTASRKIK-IKAGFTHNLEVDFIGAPDP------TATWTVGDSGAALAPELLVDAKSSTT 58
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
++ DSG Y + N +G E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 3e-20
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 313 SQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+ A + +P+ + V + AHFE + + + W G P+ AS + D
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L +G + +A +++ L V+
Sbjct: 59 KHILILHNCQLGMTGEVSFQA----ANTKSAANLKVK 91
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-20
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 181 TQAPI-FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
A I L E+ G+ AHFE +S+ + +W P+ + +
Sbjct: 2 AMALIEVEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + C +G + +A ++ NL V
Sbjct: 59 KHILILHNCQLGMTGEVSFQA----ANTKSAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-19
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 502 QRPV-FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ KPL ++ V G+ AHF + +P + +W +PL S D
Sbjct: 3 MALIEVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEA 588
+ L + + G +A N A
Sbjct: 59 KHILILHNCQLGMTGEVSFQAANTKSAA 86
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-16
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+ L G E+ G++AH++ + +P + +W + G L + D
Sbjct: 5 LIEVEKPLYGV-EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLAASPDCEIIEDGKKH 60
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L + C +G + A S+ +LKVK
Sbjct: 61 ILILHNCQLGMTGEVSFQ----AANTKSAANLKVK 91
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-15
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+E + AHFE + +++ ++ +W G+P+ I D L +
Sbjct: 9 EKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 113 IDTIPEDSGTYTCRAVNLVGFAE--VQA 138
+ +G + +A N A V+
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAANLKVKE 92
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-20
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
F K L V++G F + DP L+V+W++N + + S++ +H
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ +++ + D+ Y A G+ + + ++
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 7e-20
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
F ++L ++ +G + + DP + +W+ NG E++ +++ +H
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQ 62
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I C D Y AG+ ST L V+S
Sbjct: 63 RILFINNCQMTDDSEYYV----TAGDEKCSTELFVRSG 96
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-19
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 181 TQAPIFTTSLKNC-EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ F L ++ +G R F ++D ++V+W+ N I+ +++ +
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
L I C D Y A G S L V S S
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-19
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 313 SQAPVFTQPMRDIH-VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
S F + + + V + F + D KL+V W +NG I+ S + H
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L D Y A G+ S+ LFV S
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ + G F + + D L+V+W+KNG+ + ++ H L I
Sbjct: 11 AKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFI 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ D Y A + E+
Sbjct: 68 NNCQMTDDSEYYVTAGDEKCSTEL 91
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 94.3 bits (233), Expect = 4e-20
Identities = 82/634 (12%), Positives = 139/634 (21%), Gaps = 151/634 (23%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH--------------NNVPI 226
++PIF + EG C P S N + W V
Sbjct: 1 KSPIF--GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSS 58
Query: 227 KSGSRFTETNN--FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
K R TN G ++I Q +DSG Y C
Sbjct: 59 KYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD-------------- 104
Query: 285 TQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD 344
+ VSQ P + V +
Sbjct: 105 -----------------------VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA 141
Query: 345 SKLKVTWLRNGVPI------------QASNRVSTMHDFGYVALNFKYTY----PEDSGTY 388
K K + + G+ + R+ + G L F D+G Y
Sbjct: 142 QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR-LDIQGTGQLLFSVVINQLRLSDAGQY 200
Query: 389 TCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQ 448
C+A ++ ++ L V + ++ L K +
Sbjct: 201 LCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGEN 260
Query: 449 PSFTVQLNGPTELVEGEGTIITDTQHPKGLE-KIRKL--ED--------TEPHKRPEVDD 497
V G ++ I L ED + E
Sbjct: 261 CDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSP 320
Query: 498 NATKQRPVFTKPLQNID----AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR- 552
Q V + G + C ++K W E
Sbjct: 321 IQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY-WCLWEGAQNGRCPL 379
Query: 553 -----------------ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
+ + G + L+ + + D G Y C T
Sbjct: 380 LVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKI 439
Query: 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655
I+ + L++ +T H
Sbjct: 440 IEGEPNLKVPGN----------------------------------VTAVLGETLKVPCH 465
Query: 656 YDCRVVPVGDPTMRFEWFVNGVEL------KMGSRFHVQHD-FGYVTLDITKCVPADSGV 708
+ C+ + W G + F + V+L + AD G
Sbjct: 466 FPCKFSSYEKYWCK--WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 709 YMCKA-INRAGEAVSSTSLKVKSKSDIVSESLQP 741
Y C ++ + V+ + S +
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL 557
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 87.0 bits (214), Expect = 7e-18
Identities = 74/596 (12%), Positives = 129/596 (21%), Gaps = 116/596 (19%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFKNGRPVTI--------------GH 97
+ P+ + E C P + + + W + G
Sbjct: 4 IFGPEEVN-SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62
Query: 98 RF--RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNE 155
R + G ++I +DSG Y C +L+ G+L T+
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV- 121
Query: 156 TGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM 215
+ T NC K + + +
Sbjct: 122 -------------------------YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156
Query: 216 KVEWFHNNVPIKSGSRFT----ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271
V V R T F + I Q D+G Y C+A + +
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFS-VVINQLRLSDAGQYLCQAGDDSNSNKKNA 215
Query: 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQ 331
+L V + S++ + S
Sbjct: 216 DLQVLKPEPELVYEDLRGSVT-FHCALGPEVANVAKFLCRQS------------------ 256
Query: 332 AAHFEARLIPVGDSKLKVTWLRNGVPIQASN-RVSTMHD--FGYVALNFKYTYPEDSGTY 388
V G A R+ G ++ ED+G Y
Sbjct: 257 -----------SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY 305
Query: 389 TCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS---RFKRKEEEEV-- 443
C A ++ S + + + + K + + RKE + +
Sbjct: 306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Query: 444 ------EVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLED----------- 486
+ V G + + + P L
Sbjct: 366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE--EPGNGTFTVILNQLTSRDAGFYWC 423
Query: 487 -TEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK--VEWFRN 543
T + G+ C K +W
Sbjct: 424 LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNT 483
Query: 544 EKPLEDSSR-------ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
S + + V++ L+ V DEG Y C T A
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 61.9 bits (149), Expect = 5e-10
Identities = 43/364 (11%), Positives = 75/364 (20%), Gaps = 76/364 (20%)
Query: 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG---HRFRPIHDFGYVALDIIDTIPED 119
A F C+ N V G+ P G ++ I ED
Sbjct: 244 EVANVAKFLCRQSS--GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179
+G Y C A + E + ++
Sbjct: 302 AGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR---------------------SPTV 340
Query: 180 TTQAPIFTTSLKNCEIKEGQRAH--FECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETN 236
+ ++ C + + C + + V + R +
Sbjct: 341 VKGVAGSSVAVL-CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399
Query: 237 N--FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRL 294
G + + Q D+G Y C +
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLT-----------------------NGDTLWRTTVE 436
Query: 295 QQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRN 354
++ +G T P K W
Sbjct: 437 IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFS-------------SYEKYWCKWNNT 483
Query: 355 GVPIQAS-----NRVSTMHDFG--YVALNFKYTYPEDSGTYTCRAVNELGEAVTSST-LF 406
G S ++ D V+L D G Y C T++ +
Sbjct: 484 GCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVA 543
Query: 407 VESK 410
VE +
Sbjct: 544 VEER 547
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 1e-04
Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 43/257 (16%)
Query: 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT 122
G + C + DS V+ GR +++ G + + D+G
Sbjct: 368 LWEGAQNGRCP--LLVDSEGWVKAQYEGR-LSL----LEEPGNGTFTVILNQLTSRDAGF 420
Query: 123 YTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182
Y C + G +
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNL---------------------------KVPGNVT 453
Query: 183 APIFTTSLKNCEIKEGQRAH--FECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
A + T C ++ + C+ ++ + + P S + N
Sbjct: 454 AVLGETLKVPCHFPCKFSSYEKYWCK---WNNTGCQALPSQDEGP--SKAFVNCDENSRL 508
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
V+L + D G Y C T + + V +K+ + E+
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAA-PDEK 567
Query: 300 GRYQRTSIIEDTVSQAP 316
IE+ Q P
Sbjct: 568 VLDSGFREIENKAIQDP 584
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-20
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN 236
E F+ ++ E+ G A FE +KV W I + +++
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLAT 58
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + + P D G Y A G + +L V
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-19
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
E F++ R + VA A FEA + +KV W R G I ASN+
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLAT 58
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ L + P D G+Y A G + L V
Sbjct: 59 EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-18
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 488 EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL 547
EP K+P F+K +++ V G A F +KV W R +
Sbjct: 2 EPGKKP---------VSAFSKKPRSV-EVAAGSPAVFEAE---TERAGVKVRWQRGGSDI 48
Query: 548 EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
S++ + + + V D+G Y A G + +K+
Sbjct: 49 SASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
F++ + E+ G A ++ ++ W G ++ +++ + +
Sbjct: 8 VSAFSKKPR-SVEVAAGSPAVFEAET---ERAGVKVRWQRGGSDISASNKYGLATEGTRH 63
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL + + PAD G Y AG + LKV
Sbjct: 64 TLTVREVGPADQGSYAV----IAGSSKVKFDLKVI 94
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 7e-14
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
KP+S+E + A FE + + +KV W + G ++ +++ + L +
Sbjct: 12 SKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ P D G+Y A G ++V+ L
Sbjct: 68 REVGPADQGSYAVIA----GSSKVKFDL 91
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 6e-20
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S P+ D V + + + + W +NG+P+Q S+R+ +
Sbjct: 5 SSGLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQKGRI 60
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L ED G Y + + + V S S
Sbjct: 61 HKLVIANALTEDEGDYVF--APDAYNVTLPAKVHVISGPS 98
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-19
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
+ + T L + + G+ +C +S+N + +W N +P++ R
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCE---ISEN-IPGKWTKNGLPVQESDRLKVVQKG 58
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L I L ED G Y + V S
Sbjct: 59 RIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-17
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
PL + V GK C + + +W +N P+++S R+
Sbjct: 8 LKILTPLTDQT-VNLGKEICLKCEI--SENIP--GKWTKNGLPVQESDRLKVVQKGRIHK 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ +++ EDEG Y+ A + +
Sbjct: 63 LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVI 94
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
LT + G+ C + + + W NG+ ++ R V
Sbjct: 8 LKILTPLTDQ-TVNLGKEICLKCEIS--ENIPGK--WTKNGLPVQESDRLKVVQKGRIHK 62
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L I + D G Y+ A + V S
Sbjct: 63 LVIANALTEDEGDYVF--APDAYNVTLPAKVHVIS 95
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T + +C++ N+ +W KNG PV R + + L I
Sbjct: 11 LTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAG 147
+ + ED G Y + + S+G
Sbjct: 66 ANALTEDEGDYVFAPDAYNVTLPAKVHVISGPSSG 100
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 9e-20
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
FT L+N E EG A C +S VEW+ + ++ G R + +
Sbjct: 19 PIKFTEGLRNEEATEGATAVLRCE---LSKMA-PVEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I + ED+G Y C G+ TS L V +
Sbjct: 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 5e-19
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
TV P+ FT+ +R+ E A L + V W + ++ +R S D
Sbjct: 14 TVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP----VEWWKGHETLRDGDRHSLRQD 69
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + ED+G Y C G+ TS+ L V + S
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 4e-17
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
FT+ L+N + EG A C L VEW++ + L D R + + D
Sbjct: 20 IKFTEGLRNEE-ATEGATAVLRCEL--SKMAP--VEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + AED G Y+C G+ T+A + ++
Sbjct: 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVR 104
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-16
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
FT+ L E EG +A C + + W+ L+ G R ++ D
Sbjct: 20 IKFTEGLRNE-EATEGATAVLRCELS--KMAPVE--WWKGHETLRDGDRHSLRQDGARCE 74
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I V D+G Y+C G+ +S L V++
Sbjct: 75 LQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAM 106
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-13
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
++ E E A C+L + VEW+K + G R D L I
Sbjct: 23 TEGLRNEE-ATEGATAVLRCELSKMAP----VEWWKGHETLRDGDRHSLRQDGARCELQI 77
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ ED+G Y C G A L
Sbjct: 78 RGLVAEDAGEYLCMC----GKERTSAML 101
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 9e-20
Identities = 63/550 (11%), Positives = 118/550 (21%), Gaps = 123/550 (22%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ G C D M + P+ NN L +Q +
Sbjct: 10 ILPRGGSVLVTCS--TSCDQPMLLGIET---PLPKKELLLPGNNRKVYELSNVQ----ED 60
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
C + GQ+ L TV
Sbjct: 61 SQPMCYSNCPDGQSTAKTFL-------------------------------------TVY 83
Query: 314 QAP-VFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTMHDFG 371
P + ++ + L V LR ++ R + +
Sbjct: 84 WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELK---REPAVGEPA 140
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNL-- 429
V ++CR +L + LQ Q +
Sbjct: 141 EVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL 200
Query: 430 -EDTSRFKRKEEEEVEVTQQPSFTVQLNG----PTELVEGEGTIITDTQHPKGLEKIRKL 484
DT + + + + L PT + + ++ +
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQR 260
Query: 485 ---EDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWF 541
++ E T + V EG C P + +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR--AKVTLNGV 318
Query: 542 RNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ + + L ++ + C AT + + +
Sbjct: 319 PAQPLGPRAQ------------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR----- 361
Query: 602 LQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV 661
+L + P P E C+
Sbjct: 362 -ELRVLYG-----------PRLDERDCPGNW--------------TWPENSQQTPMCQAW 395
Query: 662 PVGDPTMRFEWFVNGV-ELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
G+P + +G L +G V G Y+C+A + GE
Sbjct: 396 --GNPLPELKCLKDGTFPLPIGESVTVT--------------RDLEGTYLCRARSTQGEV 439
Query: 721 VSSTSLKVKS 730
++ V S
Sbjct: 440 TREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 5e-18
Identities = 56/466 (12%), Positives = 110/466 (23%), Gaps = 76/466 (16%)
Query: 149 LTSTQNETGLEQIQYLEDKSKY---------QRGEYIEETTTQAP-IFTTSLKNCEIKEG 198
L N + ++ +++ S+ Q T P + G
Sbjct: 42 LLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVG 101
Query: 199 QRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
+ C++ + + V +K E V ++ ++
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRDHHGANFS 158
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317
CR L G L +P
Sbjct: 159 CRTELDLRP--------------------QGLELFENTSAPYQLQTFVLPATPPQLVSPR 198
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
+ V + F S+ +V + + T + + A
Sbjct: 199 VLEVDTQGTVVCSLDGLFPV-------SEAQVHLALGDQRLNPT---VTYGNDSFSAKAS 248
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKR 437
ED GT LG + + + +
Sbjct: 249 VSVTAEDEGTQRLTCAVILGN--------QSQETLQTVTIY---SFPAPNVILTKPEVSE 297
Query: 438 KEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDD 497
E V+ P V LNG G + P+ + T +
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 357
Query: 498 NATKQ-----RPVFTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS 551
N T++ P + + E C+ G+P +++ ++
Sbjct: 358 NQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIG 415
Query: 552 RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
T V + EG Y+C+A + GE ++ +
Sbjct: 416 ESVT-------------VTRDLEGTYLCRARSTQGEVTREVTVNVL 448
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 2e-14
Identities = 42/334 (12%), Positives = 75/334 (22%), Gaps = 107/334 (32%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTY--TCRAVNLVGFAEVQ 137
S +V + + + + + A + ED GT TC + E
Sbjct: 219 SEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197
T+ T P L E+ E
Sbjct: 276 QTV--------------------------------------TIYSFPAPNVILTKPEVSE 297
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
G +C P + + + L + ++ ++
Sbjct: 298 GTEVTVKCEAHPRA--KVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFS 343
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317
C A + + N V P
Sbjct: 344 CSATLEVAGQLIHKNQTREL---------------------------------RVLYGPR 370
Query: 318 FTQPM--RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ + EN + G+ ++ L++G T+
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTVT------- 421
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ GTY CRA + GE T+ V S
Sbjct: 422 ------RDLEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 39/343 (11%), Positives = 80/343 (23%), Gaps = 90/343 (26%)
Query: 70 FECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128
C++E +NL V + + + R + + V ++ ++CR
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188
+ Q L + + P +
Sbjct: 163 LDLR--------------------------PQGLELFENTSAPYQLQTFVLPATPPQLVS 196
Query: 189 SLKNCEIKEGQRAHFECR---LIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
++ + C L PVS +V + + + + F A
Sbjct: 197 P---RVLEVDTQGTVVCSLDGLFPVS--EAQVHLALGDQRLNPTVTYGNDS---FSAKAS 248
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRT 305
+ ED G LG V
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTV------------------------------ 278
Query: 306 SIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
T+ P + V+E + P +K+ + + +
Sbjct: 279 -----TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPR--AKVTLNGVPAQPLGPRAQ--- 328
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K T ++ +++C A E+ + E
Sbjct: 329 ---------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 1e-08
Identities = 22/210 (10%), Positives = 45/210 (21%), Gaps = 65/210 (30%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+C+ P + + L + T ++ +++C A
Sbjct: 303 VKCEAHPRAK--VTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSCSATL 348
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
V + E P
Sbjct: 349 EVAGQLIHKNQT----------------------------------RELRVLYGPRLDER 374
Query: 190 L--KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
N E + C+ + +++ + G+ V
Sbjct: 375 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKD------GTFPLPIGESVTVT----- 421
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ G Y CRA + G+ + V S
Sbjct: 422 --RDLEGTYLCRARSTQGEVTREVTVNVLS 449
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 2e-19
Identities = 40/345 (11%), Positives = 73/345 (21%), Gaps = 91/345 (26%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C V W + + F V L + + D+G Y C
Sbjct: 18 FVLTCSGSA------PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTH 70
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
+ G + L ++ + IF
Sbjct: 71 NDSRGLETDERKR-----------------------LYIFVPDPTVGFLPNDAEELFIF- 106
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
+ E CR V+D + V + + GF
Sbjct: 107 -------LTEITEITIPCR---VTDPQLVVTLHEKKGDV--ALPVPYDHQRGFS------ 148
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSI 307
+ Y C+ + + + + S
Sbjct: 149 -GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSS-------------------------- 181
Query: 308 IEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG--VPIQASNRVS 365
+ V + + +I G+ + W
Sbjct: 182 --------INVSVNAVQTVVRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTD 231
Query: 366 TMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ D Y L+ EDSGTYTC + + + +
Sbjct: 232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 4e-18
Identities = 35/234 (14%), Positives = 57/234 (24%), Gaps = 53/234 (22%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ + + E CR V DP L V + + + F
Sbjct: 92 TVGFLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF- 147
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ YICK T E + A
Sbjct: 148 --------SGIFEDRSYICKTTIGDREVDSDAYYVY------------------------ 175
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
R I + + + +G++ C V+ G+ + FEW E
Sbjct: 176 ----------RLQVSSINVSVNAVQTVVRQGENITLMCIVI--GNEVVNFEWTYPRKESG 223
Query: 681 MG--SRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
D Y L I DSG Y C + ++ +
Sbjct: 224 RLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 1e-15
Identities = 40/266 (15%), Positives = 63/266 (23%), Gaps = 31/266 (11%)
Query: 348 KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST--- 404
V W R + F V L D+G Y C + G
Sbjct: 27 PVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY 85
Query: 405 LFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT---QQPSFTVQL-----N 456
+FV L E + E E+ + P V L +
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFL-----------TEITEITIPCRVTDPQLVVTLHEKKGD 134
Query: 457 GPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAV 516
+ + + + D E + V
Sbjct: 135 VALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQT-VV 193
Query: 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRA 571
+G+N C +I G+ + EW K T S
Sbjct: 194 RQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251
Query: 572 EDEGIYICKATNALGEAVTTASMKIK 597
ED G Y C T ++ + ++ I
Sbjct: 252 EDSGTYTCNVTESVNDHQDEKAINIT 277
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 30/226 (13%), Positives = 55/226 (24%), Gaps = 49/226 (21%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
+ +C G V W R + F V L+++ D G
Sbjct: 12 LNVSSTFVLTCS----GSAP--VVWERMSQEPPQEMAKAQDGTFSSVLT-LTNLTGLDTG 64
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C ++ G L + + + P E +
Sbjct: 65 EYFCTHNDSRGLETDER-------KRLYI---------FVPDPTVGFLPNDAEELFIF-- 106
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ E CR V DP + ++ + + Q F
Sbjct: 107 ------------LTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGFSG-- 149
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
+ Y+CK E S + + ++ S+
Sbjct: 150 -------IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNA 188
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-13
Identities = 33/236 (13%), Positives = 62/236 (26%), Gaps = 58/236 (24%)
Query: 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIID 114
+ L E C+ VTD L V + V + + F
Sbjct: 100 AEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF--------- 147
Query: 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGE 174
+ + +Y C+ D+
Sbjct: 148 SGIFEDRSYICKTTI-----------------------------------GDREVDSDAY 172
Query: 175 YIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHN----NVPIKSG 229
Y+ + + + +++G+ C V N + EW + ++
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCI---VIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 230 SRFTETNNFGFVA-LDIMQCLPEDSGVYTCRAVNALG--QAVTSGNLLVHSKKSIQ 282
+ F + + L I EDSG YTC ++ Q + N+ V
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 4e-11
Identities = 25/213 (11%), Positives = 43/213 (20%), Gaps = 49/213 (23%)
Query: 195 IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
+ C + V W + + F V L + D+G
Sbjct: 12 LNVSSTFVLTCS------GSAPVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTG 64
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ 314
Y C ++ G L + D
Sbjct: 65 EYFCTHNDSRGLETDERKRL------------------------------YIFVPDPTVG 94
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
I + E R V D +L VT + F
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF---- 147
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + +Y C+ E + +
Sbjct: 148 -----SGIFEDRSYICKTTIGDREVDSDAYYVY 175
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 5e-06
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR--PVTIGHRFRPIHDFGYV 108
V+ +R+ + C + + + EW + + + D Y
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 109 A---LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I EDSGTYTC V + + +
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 4e-19
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ +++ + G C + D+ + W + V + +R T
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGEE---- 55
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+++ +P DSG+Y C + G T ++ V
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-17
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
+ + V + D + WLR+GV + SNR
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----ITGEE 55
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ + + P DSG Y C + G T ++ V
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 8e-15
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+++ V G C + D + W R+ L +S+R +
Sbjct: 4 GSSGVEVESF-LVHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGEE---- 55
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+++ D G+Y C ++ G T S+ +
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-14
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707
+ G C + D W +GV+L +R + + +++ VPADSG
Sbjct: 15 VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSG 67
Query: 708 VYMCKAINRAGEAVSSTSLKVKSK 731
+Y C + +G + S+ V
Sbjct: 68 LYACVTSSPSGSDTTYFSVNVSDA 91
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C + D + W ++G + +R R + +++ D++P DSG Y C
Sbjct: 21 LQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGEE----VEVQDSVPADSGLYACVT 73
Query: 128 VNLVGFAEVQATLQ 141
+ G ++
Sbjct: 74 SSPSGSDTTYFSVN 87
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 5e-19
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 310 DTVSQAPV----FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
+ S V R++ +A V ++ +VTW ++G + +S++V
Sbjct: 2 SSGSSGKVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVR 58
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L + ++G Y+C A G S L V +
Sbjct: 59 VEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCF 101
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-18
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF 232
G + + + + G A C V+ +V W+ + + S S+
Sbjct: 1 GSSGSSGKVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKV 57
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L + Q ++G Y+C A G S L V +
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-16
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 635 KPIFTQLLTGTS--EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
K +F + + G SA C V W+ +G +L S+ V+
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV---AQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
L + + A++G Y C AG S L+V +
Sbjct: 65 TRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVAGQC 100
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-16
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ + E G +A SC V +V W+++ K L SS++ +
Sbjct: 12 AKEQPAHREVQ-AEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR 67
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
+ + + G Y C+A G + +++ +
Sbjct: 68 LVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
A C+ V + +V W+K+G+ ++ + R L + ++G Y+C A
Sbjct: 29 ATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA 85
Query: 128 VNLVGFAEVQATLQCRG 144
+Q QC G
Sbjct: 86 GGQQLSFRLQVAGQCFG 102
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 2e-18
Identities = 34/238 (14%), Positives = 55/238 (23%), Gaps = 56/238 (23%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKHDFG 560
P + N V+ G + C+ G + W E + G
Sbjct: 157 GVPTLKVQVPNAS-VDVGDDVLLRCQ--VEGRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQ 620
++ + C A N +G A + + + A +QL T
Sbjct: 214 LTLANV--TSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM---------- 261
Query: 621 PASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK 680
V G P W NG L
Sbjct: 262 -------------------------------HHWCIPFSV--DGQPAPSLRWLFNGSVLN 288
Query: 681 MGSRFHVQHDFGYV-------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
S + L + + ++G Y A N G+A +S
Sbjct: 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 8e-17
Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 61/237 (25%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPI-KSGSRFTETNNF 238
P + N + G C++ + W + + + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQ----AGWILTELEQSATVMKSGGLPSL 212
Query: 239 GFVALDIMQCLPE-DSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
G L + + + TC A N +G+A S + V
Sbjct: 213 G---LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS--------------------- 248
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
F ++ E + G + WL NG
Sbjct: 249 --------------------FPASVQLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSV 286
Query: 358 IQASNRVSTMHDFGYV-------ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ ++ + T L ++G YT A N G+A S
Sbjct: 287 LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 1e-12
Identities = 32/267 (11%), Positives = 55/267 (20%), Gaps = 58/267 (21%)
Query: 21 KETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVT-D 79
+E + + + T+ ++ C+ V
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQ---VEGR 185
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPE-DSGTYTCRAVNLVGFAEVQA 138
+ W + L + + + + TC A N VG AEV
Sbjct: 186 GLEQAGWILTEL--EQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243
Query: 139 TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEG 198
+ F S++ E
Sbjct: 244 QVN------------------------------------------VSFPASVQLHTAVEM 261
Query: 199 QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-------NFGFVALDIMQCLPE 251
+ + W N + S L + Q
Sbjct: 262 HHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 319
Query: 252 DSGVYTCRAVNALGQAVTSGNLLVHSK 278
++G YT A N GQA S
Sbjct: 320 NNGNYTLLAANPFGQASASIMAAFMDN 346
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 9/110 (8%)
Query: 497 DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK 556
+ Q V + E + + G P + W N L ++S I T+
Sbjct: 239 AEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTE 296
Query: 557 HDFGYVAMDLSH-------VRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ H + G Y A N G+A +
Sbjct: 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-18
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL-E 548
H K+ F K L+ V +G + + D +V+W +N + +
Sbjct: 2 HHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQM 58
Query: 549 DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588
S+ + + +S D+ Y C
Sbjct: 59 SGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCST 98
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-18
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 183 APIFTTSLKNC-EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK-SGSRFTETNNFGF 240
+ F L+ ++ +G + ++D+ +V+W N I+ SGS++ +
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L I QC D Y C G S L V
Sbjct: 72 RTLTISQCSLADDAAYQCVV----GGEKCSTELFV 102
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-18
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFG 692
+ F + L ++ +G + D +W NG E++M GS++ +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL I++C AD Y C G ST L VK
Sbjct: 71 KRTLTISQCSLADDAAYQC----VVGGEKCSTELFVK 103
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-17
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIH-VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+ ++ F + + + V++ + D +V WL+NG IQ
Sbjct: 2 HHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQM 58
Query: 361 SN-RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
S + L D Y C G S+ LFV+
Sbjct: 59 SGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 8e-14
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-GHRFRPIHDFGYVALD 111
K + + + + + D + +V+W KNG+ + + G ++ L
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLT 75
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEV 136
I D Y C E+
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTEL 100
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 2e-18
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
Q +++ + G C + D+ + W + V + +R T
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE-- 61
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+++ +P DSG+Y C + G T ++ V
Sbjct: 62 --VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 5e-17
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+Q + + V + D + WLR+GV + SNR +
Sbjct: 6 QAQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE- 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + + P DSG Y C + G T ++ V
Sbjct: 62 ---VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-15
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
+ +P + + + G C + D W +GV+L +R + +
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE- 60
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+++ +PADSG+Y C + +G + S+ V
Sbjct: 61 ---EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 4e-15
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P V G C + D + W R+ L +S+R +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE---- 61
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+++ D G+Y C ++ G T S+ +
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-14
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C + D + W ++G + +R R + +++ D+IP DSG Y C
Sbjct: 27 LQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGEE----VEVRDSIPADSGLYACVT 79
Query: 128 VNLVGFAEVQATLQ 141
+ G ++
Sbjct: 80 SSPSGSDTTYFSVN 93
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 3e-18
Identities = 42/369 (11%), Positives = 77/369 (20%), Gaps = 113/369 (30%)
Query: 68 AHFECKLE---PVTDSNLKVEWFKNGRPVTIG------------------HRFRPIHDFG 106
C L+ ++ W ++G ++ R +
Sbjct: 18 VTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELR 77
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLV-GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
+L + ED G YTC V G V L
Sbjct: 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL------------------------- 112
Query: 166 DKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP 225
P T ++ ++ C ++ W +
Sbjct: 113 -------------RVLAKPQNTAEVQKVQLTGEPVPMARCV-STGGRPPAQITWHSDLGG 158
Query: 226 IKSGSRFTETNNFGFVA---LDIMQCLPEDSGVYTCRAVNALGQA--VTSGNLLVHSKKS 280
+ + S+ + ++ D TC+ + + + + NL V+
Sbjct: 159 MPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP- 217
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF--EAR 338
V + A +AR
Sbjct: 218 -----------------------------------EVSISGYDNNWYLGQNEATLTCDAR 242
Query: 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE 398
P W P+ L + + T C N LG
Sbjct: 243 SNP---EPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKPINTTLICNVTNALGA 293
Query: 399 AVTSSTLFV 407
T+ V
Sbjct: 294 RQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 5e-17
Identities = 27/230 (11%), Positives = 53/230 (23%), Gaps = 48/230 (20%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P T +Q + + C G P ++ W + + ++S++
Sbjct: 117 KPQNTAEVQKV-QLTGEPVPMARCV-STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174
Query: 563 AMD---LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
L D CK + E ++ +
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV--------------------- 213
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVE 678
Y + + A C +P + W
Sbjct: 214 ------------YYPPEVSISGYDNNW-YLGQNEATLTCDA--RSNPEPTGYNWSTTMGP 258
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L F V L I + +C N G + +++V
Sbjct: 259 L---PPFAVAQGA---QLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-13
Identities = 26/231 (11%), Positives = 44/231 (19%), Gaps = 54/231 (23%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPVTIGHRFRPIHDFGYVA 109
T L C T ++ W + + +
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCV---STGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 110 ---LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
++ + D TC+ + T+ LT + Y
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN-------LT----------VYYPP- 217
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNNV 224
+ + N A C N W
Sbjct: 218 -----------------EVSISGYDNNWYLGQNEATLTCD---ARSNPEPTGYNWSTTMG 257
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
P+ + L I + C NALG + V
Sbjct: 258 PLPPFAVAQGAQ------LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 4e-11
Identities = 27/248 (10%), Positives = 56/248 (22%), Gaps = 62/248 (25%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT---LKVEWFRNEKPLEDSSRITTKH---- 557
V + + G + C L ++ W R+ + + T+
Sbjct: 2 VVVQAPTQVPGFL-GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 558 --------------DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQ 603
+ ++ + +R EDEG Y C + + +
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRS---------VDIW 111
Query: 604 LETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV 663
L P T + + C V
Sbjct: 112 LRVLAK--------------------------PQNTAEVQKVQ-LTGEPVPMARC-VSTG 143
Query: 664 GDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---TLDITKCVPADSGVYMCKAINRAGEA 720
G P + W + + S+ + D CK + + E
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 721 VSSTSLKV 728
++ +
Sbjct: 204 PQLLTVNL 211
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 3e-10
Identities = 31/244 (12%), Positives = 57/244 (23%), Gaps = 61/244 (25%)
Query: 185 IFTTSLKNCEIKEGQRAHFECRLI---PVSDNTMKVEWFHNNVPI-------KSGSRFTE 234
+ + G C L + ++ W + G ++E
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 235 TNNFGFVA-----------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
+ FVA L + ED G YTC V + + L
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL--------- 112
Query: 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343
V P T ++ + + G
Sbjct: 113 ---------------------------RVLAKPQNTAEVQKVQLTGEPVPMARCV-STGG 144
Query: 344 DSKLKVTWLRNGVPIQASNRVSTMHDFGYVA---LNFKYTYPEDSGTYTCRAVNELGEAV 400
++TW + + +++V + D TC+ +E E
Sbjct: 145 RPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP 204
Query: 401 TSST 404
T
Sbjct: 205 QLLT 208
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 46/324 (14%), Positives = 74/324 (22%), Gaps = 67/324 (20%)
Query: 317 VFTQPMRDIHVAENQAAHFEARLI---PVGDSKLKVTWLRNGVPIQASNRVSTMH----- 368
V Q + + L ++TW R+G + T
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 369 -------------DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
+ +L ED G YTC VT L++
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL-------FVTFPQGSRSVDIWLRV 114
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFTVQLNGPTELVEGEGTI 468
L K QN + + + E T + +
Sbjct: 115 -------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPG 167
Query: 469 ITD-TQHPKGLEKIR--KLEDTEP------HKRPEVDDNATKQ------RPVFTKPLQNI 513
T L + D + H+ E T V N
Sbjct: 168 FLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDN- 226
Query: 514 DAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ A +C +P W PL + + + V
Sbjct: 227 NWYLGQNEATLTCDA--RSNPEPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKP 278
Query: 573 DEGIYICKATNALGEAVTTASMKI 596
IC TNALG ++++
Sbjct: 279 INTTLICNVTNALGARQAELTVQV 302
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 4e-18
Identities = 20/233 (8%), Positives = 56/233 (24%), Gaps = 63/233 (27%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
A + G + + + W ++ P ++ +
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------- 52
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQG 300
L + E++G Y + + + + +
Sbjct: 53 -TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAEL------------------- 92
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI------PVGDSKLKVTWLRN 354
V + +V+ A + P + +L +W +
Sbjct: 93 ---------------IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG 137
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
I + + + + +G YT + E ++ S++ +
Sbjct: 138 EDVIDTTQD-----------ITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 2e-15
Identities = 38/343 (11%), Positives = 78/343 (22%), Gaps = 83/343 (24%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139
SNL W K+ +P L + D E++G+Y +
Sbjct: 34 SNLTYTWTKDDQPHENNTA----------TLTVADATSENAGSYKVTVQDTDT------- 76
Query: 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199
+ + + + T ++ +
Sbjct: 77 --MTSVESEVFLMEE--------------------------AELIVNITEPQHFYVSSQT 108
Query: 200 RAHFECRLI------PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ P + + W I + T I + + +
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT-----------IQEFTADKN 157
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
GVYT + + S + + + L Y + I S
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSS 217
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
P T + L G + G ++ + H
Sbjct: 218 GMPNLT-------------IKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH----- 259
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF--VESKASLQ 414
L + +D+ + C A + + K S++
Sbjct: 260 -LFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-14
Identities = 24/247 (9%), Positives = 61/247 (24%), Gaps = 64/247 (25%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRL--IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ G + + L W ++++P E+++ T
Sbjct: 3 FTVSIQSNKR-CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLT------ 55
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
++ +E+ G Y + + + + +A L + P+
Sbjct: 56 ----VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHF--------- 102
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV------PVGDPTMRFEWFVN 675
+ V P + + + W
Sbjct: 103 -------------------------YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG 137
Query: 676 GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
+ + I + +GVY K + ++ +S S K+ + V
Sbjct: 138 EDVID-----------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV 186
Query: 736 SESLQPD 742
+ +
Sbjct: 187 DQDVVES 193
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 4e-11
Identities = 29/251 (11%), Positives = 64/251 (25%), Gaps = 53/251 (21%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLI------PVGDPTLKVEWFRNEKPLEDSSRITTKH 557
V Q+ V + + P + L W + E ++ + IT
Sbjct: 93 IVNITEPQHF-YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDIT--- 148
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ A+ G+Y K ++ +AS +
Sbjct: 149 --------IQEFTADKNGVYTVKVWGESEDSAASAS----------TKIMLA-------- 182
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG- 676
+ E + T L + S + + T+++ W++
Sbjct: 183 ---TMNVDQDVVESK------TVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Query: 677 ---VELKMGSRFHVQHDFGYVT----LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+GS + +T L D+ + C A + +
Sbjct: 234 GQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293
Query: 730 SKSDIVSESLQ 740
+ E ++
Sbjct: 294 TSRKCSMEVVK 304
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 6e-11
Identities = 35/312 (11%), Positives = 76/312 (24%), Gaps = 33/312 (10%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
A + A + S L TW ++ P + + T+ D
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVAD--- 58
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDT 432
E++G+Y + S +F+ +A L ++ +
Sbjct: 59 -------ATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 433 SRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTI-ITDTQHPKGLEKIRKLEDT--EP 489
K + ++++ I I + K K+ +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDS 171
Query: 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI--------PVGDPTLKVEWF 541
+ + V G + + + + T+K W+
Sbjct: 172 AASASTKIMLATMNV--DQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWY 229
Query: 542 RNEK----PLEDSSRITTKHDFGYVAMD----LSHVRAEDEGIYICKATNALGEAVTTAS 593
+ P S + + + D +D + C A T
Sbjct: 230 LQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVE 289
Query: 594 MKIKTKAGLQLE 605
+ T +E
Sbjct: 290 VAASTSRKCSME 301
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 25/257 (9%), Positives = 58/257 (22%), Gaps = 74/257 (28%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE------PVTDSNLKVEWFKNGRPVTIGHRFRPIHDF 105
+T+P+ + ++ P + L W K +
Sbjct: 95 NITEPQHFYVS-SQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID----------- 142
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLE 165
+ I + + +G YT + + A+
Sbjct: 143 TTQDITIQEFTADKNGVYTVKVWGESEDSAASAST------------------------- 177
Query: 166 DKSKYQRGEYIEETTTQAPIFTTS--LKNCEIKEGQRAHFECRLI--------PVSDNTM 215
A + +++ + G + + + T+
Sbjct: 178 -------------KIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI 224
Query: 216 KVEWFHNN----VPIKSGSRFTETNNFGFVA----LDIMQCLPEDSGVYTCRAVNALGQA 267
K W+ P GS E + L +D+ + C A
Sbjct: 225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIE 284
Query: 268 VTSGNLLVHSKKSIQTE 284
+ + + + E
Sbjct: 285 DETVEVAASTSRKCSME 301
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-18
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG----SRFTET 235
++ + T L++ ++ G R VS+ +V W N V + +R+
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279
+ L + ED G Y L+V K+
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELIVEEKQ 101
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 311 TVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN----RVS 365
+ S PV P+ D V V + +V W++NGV + + R
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYR 59
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
D L F ED G Y + L VE K
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVIT----NGGQCEAELIVEEK 100
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-16
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS----SRITTKHDF 559
+ PL++ V G + V + +V W +N L +R K D
Sbjct: 9 VLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
+ S V ED G Y EA
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGGQCEA 93
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG----SRFHVQHDF 691
+ L ++ G V + + W NGVEL +R+ + D
Sbjct: 9 VLIVTPLEDQ-QVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L + V D G Y L V+ K
Sbjct: 65 KRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----IGHRFRPIHDFGYV 108
VT + + + + V++ +V W KNG +T R+R D
Sbjct: 12 VTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEV 136
L D + ED G Y AE+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCEAEL 95
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-18
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
S P+ Q + +A + A + + GD ++WL+ G + +T+ + G
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCK--ATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K D+GTYTC A + GE S+ L V
Sbjct: 63 --TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P+ + N + A C+ GDP + W + T + G
Sbjct: 9 PIILQGPANQ-TLAVDGTALLKCK--ATGDPLPVISWLKEGFTFPGRDPRATIQEQG--T 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + ++R D G Y C AT++ GE +A + +
Sbjct: 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-15
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
PI Q + +A C+ GDP W G + G
Sbjct: 6 SGPPIILQGPANQ-TLAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL I +D+G Y C A + +GE S L V
Sbjct: 63 --TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-15
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPI-KSGSRFTETNN 237
++ PI N + A +C+ + + + + W R T
Sbjct: 5 SSGPPIILQGPANQTLAVDGTALLKCK---ATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
G L I D+G YTC A ++ G+ S L V
Sbjct: 62 -G--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-11
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P + L G A +CK P+ + W K G I + G L
Sbjct: 12 LQGPANQT-LAVDGTALLKCKATGDPLP----VISWLKEGFTFPGRDPRATIQEQG--TL 64
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSA 146
I + D+GTYTC A + G A L S
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 6e-18
Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 466 GTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFS 525
+ +RK E + + + ++ +P F V EG++A+F
Sbjct: 446 PEPLPPLGRISNYSSLRKHRPQE-YSIRDAFWDRSEAQPRFIVKPYGT-EVGEGQSANFY 503
Query: 526 CRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585
CR+I V W ++++ L+ S + +++ + ++ V+ +D+G Y +A N+
Sbjct: 504 CRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561
Query: 586 GEAVTTASMKI 596
G + +
Sbjct: 562 GTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 1e-17
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
+Y + + + P F E+ EGQ A+F CR+I S V W ++ +K
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPV--VTWHKDDRELK 524
Query: 228 SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ + N L I + +D G YT RA N+ G L V
Sbjct: 525 QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-16
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+ Q S +R +P F GT E+ EGQSA++ CRV+ P + W +
Sbjct: 463 KHRPQEYSIRDAFWDRSEAQPRFIVKPYGT-EVGEGQSANFYCRVIASSPPVV--TWHKD 519
Query: 676 GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
ELK ++ +++ L I + D G Y +A N G L V
Sbjct: 520 DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 7e-16
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 290 SLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV 349
+ S L++ Y D P F V E Q+A+F R+I S V
Sbjct: 457 NYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI--ASSPPVV 514
Query: 350 TWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
TW ++ ++ S + ++ L +D G YT RA N G L V
Sbjct: 515 TWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 7e-12
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 36 SKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI 95
++ + + KP E + E A+F C++ + V W K+ R +
Sbjct: 469 YSIRDAFWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVIASSPP--VVTWHKDDRELKQ 525
Query: 96 GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
++ ++ L I +D G YT RA N G E L
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 6e-18
Identities = 39/248 (15%), Positives = 66/248 (26%), Gaps = 67/248 (27%)
Query: 507 TKPLQNIDAVEEGKNAHFSCRLI--PVGDPTLKVEWFRNEKPLEDS-------------- 550
T P Q I+ + G+ A+ C+ P L +EW + +
Sbjct: 4 TTPEQRIEKAK-GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 551 ----------SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600
+ G ++++++++ D G Y CK A G A + +
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV---- 118
Query: 601 GLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660
KP T+ G C
Sbjct: 119 --------------------------------LVKPSGTRCFV-DGSEEIGNDFKLKCEP 145
Query: 661 VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
G ++FEW M + + + + + SG Y C NR G
Sbjct: 146 KE-GSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSD 202
Query: 721 VSSTSLKV 728
L V
Sbjct: 203 QCMLRLDV 210
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 4e-16
Identities = 37/247 (14%), Positives = 60/247 (24%), Gaps = 66/247 (26%)
Query: 187 TTSLKNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSG--------------- 229
TT + E +G+ A+ C+ P + +EW + +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 230 ---------SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
+ G ++++ D G Y C+ A G A L V K
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-- 121
Query: 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI 340
P T+ D +
Sbjct: 122 -----------------------------------PSGTRCFVDGSEEIGNDFKLKCE-P 145
Query: 341 PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400
G L+ W + ++ K E SGTY+C N +G
Sbjct: 146 KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVGSDQ 203
Query: 401 TSSTLFV 407
L V
Sbjct: 204 CMLRLDV 210
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-14
Identities = 35/250 (14%), Positives = 61/250 (24%), Gaps = 67/250 (26%)
Query: 52 TVTKPKSIENLRERGHAHFECKL--EPVTDSNLKVEWFKNGRPVTIG------------- 96
++T P+ + A+ CK P L +EW + I
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 97 -----------HRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGS 145
H G ++++ + D GTY C+ G A + L
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV- 120
Query: 146 AGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205
P T + + G +C
Sbjct: 121 -------------------------------------KPSGTRCFVDGSEEIGNDFKLKC 143
Query: 206 RLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
++ EW + + + + + E SG Y+C N +G
Sbjct: 144 E-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSEYSGTYSCTVQNRVG 200
Query: 266 QAVTSGNLLV 275
L V
Sbjct: 201 SDQCMLRLDV 210
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 2e-11
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P T+ + E G + C G L+ EW + + + +
Sbjct: 121 KPSGTRCFVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVI 178
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + + +E G Y C N +G + +
Sbjct: 179 S--VKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 7e-06
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 26/111 (23%)
Query: 647 EIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---------- 694
E +G++A+ C+ P + EW ++ + ++ + + + +
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 695 --------------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
++++T +D G Y CK G A L V K
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 319 TQPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV--- 373
T P + I A+ + A+ L P L + WL + Q ++V ++ +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 374 ---------------------ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
++N D GTY C+ G A L V K S
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-17
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGF 240
+ T L++ G+R EC VS++ V+WF N I G SR+
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I D+ Y+ +S L V K
Sbjct: 64 HILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLK 97
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-17
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ--ASNRVSTMHDF 370
S + T+ + D + E V + V W +NG I +R +
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
L + D+ Y+ +S+ L V+ K+
Sbjct: 62 KKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKS 98
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL--EDSSRITTKHDFGY 561
+ TK L++ G+ C V + V+WF+N + + SR + +
Sbjct: 8 IMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEA 588
+ + D Y T A
Sbjct: 64 HILIIEGATKADAAEYSVMTTGGQSSA 90
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDFGY 693
+ T+ L T G+ +C V + +WF NG E+ G SR+ ++ +
Sbjct: 8 IMVTKQLEDT-TAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
L I AD+ Y SS L V KS S
Sbjct: 64 HILIIEGATKADAAEYSVM----TTGGQSSAKLSVDLKSGPSS 102
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVAL 110
+ + EC+ V++ + V+WFKNG + G R+R + L
Sbjct: 11 TKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEV 136
I D+ Y+ A++
Sbjct: 67 IIEGATKADAAEYSVMTTGGQSSAKL 92
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-17
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
S PV Q + VA + G + W ++GV + + + G
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLENG- 62
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
L +Y D+G YTC A GEA S+ + V+
Sbjct: 63 -VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-16
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
PV + N V SC G P + W ++ + + + G
Sbjct: 9 PVIRQGPVNQ-TVAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLENG--V 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + + D G Y C A+ GEA +A ++++
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-15
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI-KSGSRFTETNNF 238
++ P+ N + C + W + V + SR + N
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLEN- 61
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
G L I D+G YTC A G+A S + V
Sbjct: 62 G--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 3e-15
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 5/105 (4%)
Query: 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF 691
P+ Q + + C G P W +GV + Q +
Sbjct: 5 SSGPPVIRQGPV-NQTVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G L I D+G Y C A +GEA S ++V+ V
Sbjct: 62 G--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQ 104
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 53 VTKPKSIENLRERGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
P + + G C P + W K+G V+ + G
Sbjct: 12 RQGPVNQT-VAVDGTFVLSCVATGSPVPT------ILWRKDGVLVSTQDSRIKQLENG-- 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQN 154
L I D+G YTC A G A A ++ + + +
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRP 108
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-17
Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 7/96 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
++ + +R C + +V W + +
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRR 69
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L + EDSG Y C S + V
Sbjct: 70 LVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-17
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
VS V+ + + + +V W ++G + S + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L EDSG Y C + S T+ V
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-15
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
V+ + AV + +C + P +V W ++ + + +S + + +
Sbjct: 13 WIVYPSGKVYVAAVR-LERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ L V+ ED G Y+C+ + + ++ +
Sbjct: 69 RLVLPAVQLEDSGEYLCEI----DDESASFTVTVT 99
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 4e-15
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 8/109 (7%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
++ + + C + P W +G E+ +Q +
Sbjct: 13 WIVYPSGKVYV-AAVRLERVVLTCEL---CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDA 743
L + DSG Y+C+ + +S ++ V + S
Sbjct: 69 RLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEPPVRIIYSGPSSG 113
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-12
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 53 VTKPKSIENL--RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P + C+ + +V W K+G V + L
Sbjct: 14 IVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEV 136
+ EDSG Y C + V
Sbjct: 71 VLPAVQLEDSGEYLCEIDDESASFTV 96
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-17
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 314 QAPVFTQPM----RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
+AP +T R V F G+ + WL+NG + +R+
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 370 FGYV-ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+L + P D G YTC NE G + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 8e-17
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 501 KQRPVFTKPLQNID---AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH 557
K+ P +T + AV F C G+P + W +N K + RI
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 558 DFGYV-AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
++ + V D+G Y C N G T + +
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 8e-17
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 634 EKPIFTQLLTGTSE---IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
P +T + + + C G+P W NG E K R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 691 FGYV-TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+L + VP+D G Y C N G + L V
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-15
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 182 QAPIFTTSLK----NCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETN 236
+AP +T + K + F C P N + W N K R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 237 NFGFV-ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+L + +P D G YTC N G + +L V
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 9e-13
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 48 FIYYTVTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIH 103
+ + + + F C P + W KNG+ HR
Sbjct: 7 WTNTEKMEKRLHA-VPAANTVKFRCPAGGNPMP------TMRWLKNGKEFKQEHRIGGYK 59
Query: 104 DFGYV-ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L + +P D G YTC N G L
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 6e-17
Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 50/227 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR---NEKPLEDSSRITTKHDFGYVAMDLSHVRAE 572
+ K C L V ++ + D +RI+ G+ +
Sbjct: 21 ENKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMIS 74
Query: 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
G+ C+A + + + + +
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGY-------------------RIYDVVLSPSH-- 113
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--------R 684
E+ G+ +C + + F W + + +
Sbjct: 114 ------------GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 161
Query: 685 FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ TL I +D G+Y C A + +ST ++V
Sbjct: 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 8e-14
Identities = 29/226 (12%), Positives = 55/226 (24%), Gaps = 50/226 (22%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEW---FHNNVPIKSGSRFTETNNFGFVALDIMQCLPED 252
+ + C S + + V + + G+R + + GF I +
Sbjct: 22 NKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMISY 75
Query: 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTV 312
+G+ C A + ++V I
Sbjct: 76 AGMVFCEAKINDESYQSIMYIVVVVGYRI------------------------------- 104
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
V P I ++ + + + W Q V+
Sbjct: 105 --YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Query: 373 VALNFKYTY--------PEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ K+ D G YTC A + L S+ + V
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 1e-13
Identities = 28/240 (11%), Positives = 50/240 (20%), Gaps = 46/240 (19%)
Query: 48 FIYYTVTKPKSIENLRERGH-AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG 106
FI + + + C + SNL V I
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISWDS 62
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166
I + +G C A + +
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIV------------------------- 97
Query: 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI 226
+ + + E+ G++ C + + W + +
Sbjct: 98 ---------VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKH 148
Query: 227 KSGSRFTE--------TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
+ L I D G+YTC A + L S + VH
Sbjct: 149 QHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 7e-17
Identities = 27/226 (11%), Positives = 39/226 (17%), Gaps = 65/226 (28%)
Query: 198 GQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS-----------------GSRFTETNNFG 239
G+R VS ++V WF + F +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
L + G Y CR + +L V
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP--------------------- 104
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFE--ARLIPVGDSKLKVTWLRNG-- 355
+ + V WL
Sbjct: 105 ----------------LTLSVHSERSQFPDFSVLTVTCTVN----AFPHPHVQWLMPEGV 144
Query: 356 --VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399
P A+ V D TC N+ EA
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-16
Identities = 25/225 (11%), Positives = 43/225 (19%), Gaps = 66/225 (29%)
Query: 67 HAHFECKLEPVTDS-NLKVEWFKNGRP-------------VTIGHRFRPIH----DFGYV 108
V+ ++V WFK G + I FR
Sbjct: 8 RVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTF 67
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168
L + G Y CR Q L
Sbjct: 68 FLVVTAANISHDGNYLCRMKLGETEVTKQEHL---------------------------- 99
Query: 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNN--- 223
+ + + + + + C + P V+W
Sbjct: 100 ----------SVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP----HVQWLMPEGVE 145
Query: 224 -VPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
P + + + + TC N +A
Sbjct: 146 PAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-15
Identities = 22/227 (9%), Positives = 39/227 (17%), Gaps = 61/227 (26%)
Query: 516 VEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLED-----------------SSRITTKH 557
G+ + V P ++V WF+ E
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 558 DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617
+ ++ +G Y+C+ E L P
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE----------HLSVVKP-------- 104
Query: 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG- 676
+ + + C V P +W +
Sbjct: 105 ------------------LTLSVHSERSQ-FPDFSVLTVTCTVN--AFPHPHVQWLMPEG 143
Query: 677 ---VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720
+ D C N EA
Sbjct: 144 VEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 3e-11
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 7/89 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE----KPLEDSSRITTKHDF 559
+ + + +C + P V+W E P + + + D
Sbjct: 105 LTLSVHSERS-QFPDFSVLTVTCTV--NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEA 588
+ C N EA
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 16/108 (14%), Positives = 25/108 (23%), Gaps = 18/108 (16%)
Query: 649 MEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKM-----------------GSRFHVQHD 690
G+ V P + WF G + F +
Sbjct: 4 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
L +T + G Y+C+ E L V + S
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS 111
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 8e-17
Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 10/102 (9%)
Query: 178 ETTTQAPIFTT---SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE 234
+ + P+ + +R C +S W+ + ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVV 58
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ L + + +DSG + CR + V
Sbjct: 59 KMDGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 313 SQAPVF---TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
S PV Q + ++ + TW ++G ++ S + D
Sbjct: 5 SSGPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L +DSG + CR + V+
Sbjct: 62 GRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-14
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + + +C + W+++ + +E+S + K D
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 563 AMDLSHVRAEDEGIYICKATNALGEA 588
+ L + +D G + C+
Sbjct: 66 RLILPEAKVQDSGEFECRTEGVSAFF 91
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-14
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
+ C + W+ +G +++ V+ D L + + DS
Sbjct: 21 TFTTSERVVLTCEL---SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDS 77
Query: 707 GVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G + C R + + V+ S S
Sbjct: 78 GEFEC----RTEGVSAFFGVTVQDPSGPSS 103
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-14
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 53 VTKPKSIENL--RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+ P+ +L C+ ++ + W+K+G+ V D L
Sbjct: 11 ILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGRKHRL 67
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEV 136
+ + +DSG + CR + F V
Sbjct: 68 ILPEAKVQDSGEFECRTEGVSAFFGV 93
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 8e-17
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNN---VPIKSGSRFT 233
+ + +F + +K G+ F ++ + ++WF + K+G
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLL-RKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 234 ------ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
+ + I++ +G Y C S +L VH
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDS 121
Query: 288 GES 290
G S
Sbjct: 122 GPS 124
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-13
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARL--IPVGDSKLKVTWLRN---------GVPIQ 359
+ S +F + + V + F A++ + K + W + G +Q
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLL-RKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ +G Y C + S L V
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 2e-13
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL---KVEWFRN---EKPLEDSSRITTKH 557
+F + Q V+ G++ F ++ + L ++WF+ + + + K
Sbjct: 8 ILFIEKPQGG-TVKVGEDITFIAKV--KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 558 DF------GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
F M + + G Y C+ T + +++
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 6e-12
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 15/109 (13%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM---RFEWF---------VNGVELKMGS 683
+F + G + G+ + +V + + +WF G L++
Sbjct: 8 ILFIEKPQGG-TVKVGEDITFIAKVK--AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
F + I K +G Y C+ + S L+V +
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 4e-11
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKN---------GRPVTIGHRFRP 101
+ KP+ + F K++ + ++WFK G+ + + F
Sbjct: 11 IEKPQGGTV-KVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFER 68
Query: 102 IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ II +G Y C F L+
Sbjct: 69 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 1e-16
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-------PLEDSSRIT 554
F + + G + C VG P +++W+ + L D +R+
Sbjct: 20 HMAGFVQAPLSQQ-RWVGGSVELHCEA--VGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 555 TKHDFGYVAMD------LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
H + + ED G Y C+A+N T + ++K
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 8e-14
Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 16/113 (14%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE-------LKMG 682
R F Q + G S C V G P +W+ G L G
Sbjct: 16 PRGSHMAGFVQAPLSQ-QRWVGGSVELHCEAV--GSPVPEIQWWFEGQGPNDICSQLWDG 72
Query: 683 SRFHVQHDFGYV------TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+R H T+ I V D+G Y C+A N + + +VK
Sbjct: 73 ARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 8e-14
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 18/129 (13%)
Query: 301 RYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360
+ +S + S F Q + VG ++ W G
Sbjct: 7 HHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEA--VGSPVPEIQWWFEGQGPND 64
Query: 361 SNRV-------------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL-- 405
+T H ++ ED+GTY CRA N+ +
Sbjct: 65 ICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Query: 406 -FVESKASL 413
+V ++A +
Sbjct: 125 KWVRAQAVV 133
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 4e-12
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN-------VPIKSGSRFTE 234
F + + + G C V +++W+ + G+R
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEA--VGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 235 TNNFGFVA------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ + I + ED+G Y CRA N + + V
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 4e-07
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 24/109 (22%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTI-------GHRFRP 101
V P S + G C+ P +++W+ G+ G R
Sbjct: 25 VQAPLSQQ-RWVGGSVELHCEAVGSPVP------EIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 102 IHDFGYVA------LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
+H + I + ED+GTY CRA N + + +
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 2e-16
Identities = 41/341 (12%), Positives = 70/341 (20%), Gaps = 95/341 (27%)
Query: 80 SNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQAT 139
V W + + +GTYTC N
Sbjct: 36 DPDFVRWTFKTYFNEMVENKKNE-------WIQEKAEATRTGTYTCSNSN---------- 78
Query: 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199
I KE
Sbjct: 79 -------------------------------GLTSSIYVFVRDPAKLFLVGLPLFGKEDS 107
Query: 200 RAHFECRLIPVSDN-TMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
A C ++D + + + + F G ++ +
Sbjct: 108 DALVRCP---LTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR--AYHRLCVR 162
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317
C A G + S + + + + PV
Sbjct: 163 CAAQRD-GTWLHSDKFTLK-------------------------------VREAIKAIPV 190
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV-------STMHDF 370
+ P + + I + + WL+ Q +V +
Sbjct: 191 VSVPETSHLLKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE 249
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
L +DSG + C A N G A ++TL V K
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 2e-15
Identities = 42/313 (13%), Positives = 85/313 (27%), Gaps = 59/313 (18%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
P ++ V V W +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCI----DPDF--VRWTFKTYFNEMVENKKNE------ 58
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433
+ +GTYTC N L ++ +FV A L L
Sbjct: 59 -WIQEKAEATRTGTYTCSNSNGLTSSIY---VFVRDPAKLFLVGLP-------------- 100
Query: 434 RFKRKEEEEV----EVTQQPSFTVQL-NGPTELVEGEGTIITDTQHPKGLEKIRKLEDT- 487
KE+ + +T L + + + T + + + ++ +++
Sbjct: 101 -LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 488 ----------EPHKRPEVD---DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534
+ A K PV + P + +++G C I
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSH-LLKKGDTFTVVCT-IKDVST 217
Query: 535 TLKVEWFRNEKPLEDSSRITTKHDFGYVAMD-------LSHVRAEDEGIYICKATNALGE 587
++ W + + +++ +S R +D G+++C A N G
Sbjct: 218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277
Query: 588 AVTTASMKIKTKA 600
A T ++K+ K
Sbjct: 278 ANVTTTLKVVEKG 290
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 37/224 (16%), Positives = 64/224 (28%), Gaps = 45/224 (20%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFR-NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+E +A C + + K L G ++ RA
Sbjct: 103 GKEDSDALVRCP--LTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNV--KRAYHR 158
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
C A G + + +K + + A P+ PE +
Sbjct: 159 LCVRCAAQRD-GTWLHSDKFTLKVREAI------------------KAIPVVSVPETSH- 198
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF--- 691
+ +G + C + ++ W + + ++
Sbjct: 199 ------------LLKKGDTFTVVCTIK-DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGD 245
Query: 692 ----GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL I+ DSGV+MC A N G A +T+LKV K
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 4e-12
Identities = 40/245 (16%), Positives = 68/245 (27%), Gaps = 54/245 (22%)
Query: 49 IYYTVTKPKSI------ENLRERGHAHFECKLEPVTDSNLK-VEWFK-NGRPVTIGHRFR 100
IY V P + +E A C P+TD + + +G+ + F
Sbjct: 84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRC---PLTDPQVSQYSLIECDGKSLPTDLTFV 140
Query: 101 PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQ 160
P G ++ C A + T L
Sbjct: 141 PNPKAGITIKNV--KRAYHRLCVRCAAQR------------------------DGTWLHS 174
Query: 161 IQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF 220
++ + E P+ + + +K+G C I ++ W
Sbjct: 175 DKFTL---------KVREAIKAIPVVSVPETSHLLKKGDTFTVVCT-IKDVSTSVNSMWL 224
Query: 221 HNNVPIKSGSRFTETNNFGFVA-------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
N + ++ + L I +DSGV+ C A N G A + L
Sbjct: 225 KMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Query: 274 LVHSK 278
V K
Sbjct: 285 KVVEK 289
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 6e-10
Identities = 22/227 (9%), Positives = 39/227 (17%), Gaps = 59/227 (25%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
P + ++ G C + V W +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCI------DPDFVRWTFKTYFNEMVENKKNE------ 58
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
+ +G YTC N L
Sbjct: 59 -WIQEKAEATRTGTYTCSNSNGLT------------------------------------ 81
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQA 360
S I V + E+ A + + + +G +
Sbjct: 82 ----SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP--LTDPQVSQYSLIECDGKSLPT 135
Query: 361 SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G C A + G + S +
Sbjct: 136 DLTFVPNPKAGI--TIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTL 179
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 27/232 (11%), Positives = 43/232 (18%), Gaps = 60/232 (25%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
P + VE G +C V W E +
Sbjct: 11 SPPSIHPAQSEL-IVEAGDTLSLTCI----DPDF--VRWTFKTYFNEMVENKKNE----- 58
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
A G Y C +N L ++ +
Sbjct: 59 --WIQEKAEATRTGTYTCSNSNGLTSSIY---------------------------VFVR 89
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF-VNGVELK 680
E A C + ++ +G L
Sbjct: 90 DPAKLFLVGLPL-------------FGKEDSDALVRCPL--TDPQVSQYSLIECDGKSLP 134
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSK 731
F G ++ + C A S +LKV+
Sbjct: 135 TDLTFVPNPKAGITIKNVKR--AYHRLCVRCAAQRDGTWLHSDKFTLKVREA 184
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 4e-16
Identities = 42/375 (11%), Positives = 91/375 (24%), Gaps = 102/375 (27%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH-----------------DFGYVAL 110
C +++ W + + +G++ + D G L
Sbjct: 12 VELTCTASQ--KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + EDS TY C +++ Q+
Sbjct: 70 IIKNLKIEDSDTYICEV-------------------------EDQKEEVQLLVFG----- 99
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
T+ + + +GQ ++ V+ G
Sbjct: 100 ----------------LTANSDTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKNIQGG 141
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGES 290
+ L + Q +DSG +TC + + +++V + + + E
Sbjct: 142 K----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEG 191
Query: 291 LSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT 350
+ V + + + ++A S +
Sbjct: 192 -------------------EQVEFSFPLA--FTVEKLTGSGELWWQAERASSSKSWITFD 230
Query: 351 WLRNGVPIQASNRVSTMHDFGYVALNFKYT----YPEDSGTYTCRAVNELGEAVTSSTLF 406
V ++ + + + L+ SG T + G+ L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Query: 407 VESKASLQLDTQNEA 421
V LQ + E
Sbjct: 291 VMRATQLQKNLTCEV 305
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 3e-15
Identities = 51/414 (12%), Positives = 103/414 (24%), Gaps = 95/414 (22%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-----------------ETNNF 238
K+G C +++ W ++N G++ + +
Sbjct: 7 KKGDTVELTCT--ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
G L I EDS Y C
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEV-------------------------------------- 86
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
E + + D H+ + Q+ S V
Sbjct: 87 -----EDQKEEVQLLVFGLTANS--DTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKN 137
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS-LQLDT 417
+ L+ +DSGT+TC + + + V + +
Sbjct: 138 IQGGKT----------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVY 187
Query: 418 QNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPK- 476
+ E + + K E+ + + + + +L E ++ TQ PK
Sbjct: 188 KKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL 247
Query: 477 GLEKIRKLEDTEPHKRPEVDD------NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIP 530
+ K L T P P+ + + + + + +C +
Sbjct: 248 QMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWG 307
Query: 531 VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584
P L + K + S R V + G++ C +++
Sbjct: 308 PTSPKLMLSLKLENKEAKVSKREK-----------AVWVLNPEAGMWQCLLSDS 350
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 1e-14
Identities = 30/286 (10%), Positives = 67/286 (23%), Gaps = 55/286 (19%)
Query: 496 DDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555
D Q VF + + +G++ + + V+ + +
Sbjct: 88 DQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKNIQGGKTLS 145
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKI 615
+S + +D G + C + + + + +
Sbjct: 146 ----------VSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL---------AFQKASSIV 186
Query: 616 QELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675
+ E EK + + + F+
Sbjct: 187 YKKEGEQVEFSFPLAFTVEK------------LTGSGELWWQAERASSSKSWITFDLKNK 234
Query: 676 GVELKMGSRFHVQHDFGYVTLDITKCV----PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
V +K ++ + L +T A SG + G+ +L V
Sbjct: 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294
Query: 732 SDI-------VSESLQPDA---WKK--------IQLKEAEMNKPDA 759
+ + V P K + K + P+A
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEA 340
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 3e-13
Identities = 47/372 (12%), Positives = 97/372 (26%), Gaps = 101/372 (27%)
Query: 40 ENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF 99
E+ K++ + + +T L + + P S+ V+ G +
Sbjct: 87 EDQKEEVQLLVFGLTANSDTH-LLQGQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGK- 142
Query: 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLE 159
L + +DSGT+TC + E + +
Sbjct: 143 ---------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV------------------ 175
Query: 160 QIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEW 219
+ K Y +E F + ++ ++ S + + +
Sbjct: 176 ----VLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDL 231
Query: 220 FHNNVPIKSGSRF--TETNNFGFVALDIMQCLP--EDSGVYTCRAVNALGQAVTSGNLLV 275
+ V +K ++ + + L + Q LP SG T G+ NL+V
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV 291
Query: 276 HSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335
TQ ++L+ V
Sbjct: 292 ------MRATQLQKNLT-----------------CEVWGPT------------------- 309
Query: 336 EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395
KL ++ + S R + ++G + C +
Sbjct: 310 --------SPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSDS 350
Query: 396 LGEAVTSSTLFV 407
G+ + S + V
Sbjct: 351 -GQVLLESNIKV 361
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-12
Identities = 22/232 (9%), Positives = 58/232 (25%), Gaps = 76/232 (32%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD---------- 565
++G +C +++ W + + ++ + D
Sbjct: 6 GKKGDTVELTCT--ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 566 -------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ +++ ED YIC+ + E ++
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV-------------------------QLLVF 98
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
A+ + +++GQS + + +
Sbjct: 99 GLTANS--------------------DTHLLQGQSLTLTLESP--PGSSPSVQCRSPRGK 136
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G + TL +++ DSG + C + + + V +
Sbjct: 137 NIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 178
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-09
Identities = 44/423 (10%), Positives = 101/423 (23%), Gaps = 118/423 (27%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVST-----------------MHDFGYVALNFKYTYPEDS 385
++ W + N+ S + D G L K EDS
Sbjct: 20 QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79
Query: 386 GTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEV 445
TY C ++ E V + + + L L +E
Sbjct: 80 DTYICEVEDQKEE-VQLLVFGLTANSDTHLLQGQSLTL------------------TLES 120
Query: 446 TQQPSFTVQ--LNGPTELVEGEGTIITD-------------TQHPKGLEKIRKLEDTEPH 490
S +VQ + G+ ++ Q+ K +E +
Sbjct: 121 PPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 180
Query: 491 KRPEVDDNATKQRPVFTKPLQ-NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549
K + ++ F+ PL ++ + + + + E ++
Sbjct: 181 KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240
Query: 550 SSRITTKHDFGYVAMDLS----HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLE 605
++ + + L+ + G G+ ++ +
Sbjct: 241 VTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR------- 293
Query: 606 TQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD 665
+ C V
Sbjct: 294 -------------------------------------------ATQLQKNLTCEVWGPTS 310
Query: 666 PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725
P + + E K+ R + ++G++ C + +G+ + ++
Sbjct: 311 PKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSD-SGQVLLESN 358
Query: 726 LKV 728
+KV
Sbjct: 359 IKV 361
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 32/274 (11%), Positives = 72/274 (26%), Gaps = 71/274 (25%)
Query: 10 PQDSSPYL---SSKKETSYHWQNVPVPEWSKEQENAKKKKNF-IYYTVTKPKSIENLRER 65
QDS + ++ ++ V + K KK+ + ++ ++E L
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTI----PEDSG 121
G ++ + + S + + V + + + L + SG
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 122 TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181
T G + L ++ +TQ + L
Sbjct: 271 NLTLALEAKTGKLHQEVNLV------VMRATQLQKNL----------------------- 301
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
C + + + + N K R
Sbjct: 302 ----------------------TCEVWGPTSPKLMLSLKLENKEAKVSKREK-------- 331
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ L ++G++ C ++ GQ + N+ V
Sbjct: 332 ---AVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-----------------QHDFG 692
+G + C +++F W + +G++ D G
Sbjct: 8 KGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
L I DS Y+C+ ++ E V + + SD
Sbjct: 66 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH 107
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-15
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ + AV G +C P+ ++ W ++ PL
Sbjct: 9 EEVQLVVEPEGG-AVAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPSPV------- 58
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ L + +D+G Y C AT++ + ++ I
Sbjct: 59 --LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 8e-15
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
+ + VA ++ W+++GVP+
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPSPV----- 58
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L P+D GTY+C A + S + +
Sbjct: 59 ----LILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNN 237
+ + + + G C V ++ W + VP+
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCE---VPAQPSPQIHWMKDGVPLPLPPSPV---- 58
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L + + P+D G Y+C A ++ S + +
Sbjct: 59 -----LILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 6e-12
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E+ G + G + C V P+ + W +GV L +
Sbjct: 9 EEVQLVVEPEGG-AVAPGGTVTLTCEVP--AQPSPQIHWMKDGVPLPLPPSP-------- 57
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L + + P D G Y C A + + S ++ +
Sbjct: 58 -VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-09
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 53 VTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
V +P+ + G C++ P ++ W K+G P+ + L
Sbjct: 14 VVEPEGGA-VAPGGTVTLTCEVPAQPS----PQIHWMKDGVPLPLPPSP---------VL 59
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + P+D GTY+C A + + +
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-15
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
Y P L + V G+P W NG L+ HV++
Sbjct: 6 YYPPRVVSLEEPE----LRLEHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 693 YV----TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
L K ++G Y A N G A + + + V E
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 5e-15
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + E + G+P + W N +PL +S I ++
Sbjct: 9 PRVVSLEEP----ELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 564 MD----LSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + + G Y A N LG A T + +
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-14
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
TV P E E + G+ + WL NG P++ S + +
Sbjct: 4 TVYYPPRVVSLEEPELRLE---HCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQ 58
Query: 371 GYVA----LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L F ++G YT A N LG A + +
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 102
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 4e-12
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 17/112 (15%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKSGSRFT----E 234
P + + + E + P + W HN P++ +
Sbjct: 8 PPRVVSLEEP---ELRLEHCIEFVVRGNPPP------TLHWLHNGQPLRESKIIHVEYYQ 58
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQ 286
L + ++G YT A N LG A + N + E
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVS 110
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 52 TVTKPKSIENLRE---RGHAHFECKL----EPVTDSNLKVEWFKNGRPVTIGHRFRPIHD 104
TV P + +L E R E + P + W NG+P+ +
Sbjct: 4 TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPP------TLHWLHNGQPLRESKIIHVEYY 57
Query: 105 FGYVA----LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L ++G YT A N +G A
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 3e-15
Identities = 29/273 (10%), Positives = 55/273 (20%), Gaps = 82/273 (30%)
Query: 507 TKPLQNIDAVEEGKNAHFSCRL-IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
++ V G C + + W + P + +++ +
Sbjct: 6 RTTHTEVE-VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 566 -----------------------------LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
L+HV +D G Y C+ ++ T
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ---WSIRTEFGLD 121
Query: 597 KTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656
L++ P + E ++ EG
Sbjct: 122 AKSVVLKVTGHTP-----------SNNVHVSTAEVV--------------QVDEGNDITM 156
Query: 657 DCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV---------------------T 695
C W+ + Q
Sbjct: 157 TCPCT--DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARN 214
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L I D+G C+ GE + S +
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 69.6 bits (169), Expect = 3e-13
Identities = 32/272 (11%), Positives = 51/272 (18%), Gaps = 81/272 (29%)
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTET---------- 235
T+ E+ G C +D + W P +S F
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 236 -------------------NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
N L + P+D G Y C+
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ-------------- 111
Query: 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFE 336
SI+TE L+ + V + V E
Sbjct: 112 --WSIRTEFGLDAKSVVLK------------VTGHTPSNNVHVSTAEVVQVDEGNDITMT 157
Query: 337 ARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY--------------- 381
+ VTW + + +
Sbjct: 158 CP--CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215
Query: 382 ------PEDSGTYTCRAVNELGEAVTSSTLFV 407
D+G C GE + +
Sbjct: 216 VIRAAKITDAGRVWCELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 66.9 bits (162), Expect = 2e-12
Identities = 28/275 (10%), Positives = 52/275 (18%), Gaps = 82/275 (29%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRP--------- 101
TV + + G C + + W K P F+
Sbjct: 4 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL 63
Query: 102 --------------------IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + L + P+D G Y C+ E
Sbjct: 64 GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG---- 119
Query: 142 CRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRA 201
+ T + ++ + ++ EG
Sbjct: 120 -------------------------LDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDI 154
Query: 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA------------------- 242
C V W+ ++ T
Sbjct: 155 TMTCP--CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212
Query: 243 --LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L I D+G C G+ + +
Sbjct: 213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 3e-15
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 626 PQEPERQYEKPIFT--QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
P E P + L T G+ + G P + W G L S
Sbjct: 12 PVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ--GKPRPQVVWTKGGAPLD-TS 68
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
R HV+ + + +DSG Y + ++ ++V K
Sbjct: 69 RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 7e-14
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 501 KQRPVFTKPLQNIDA--VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558
+ P P + G+ + G P +V W + PL D+SR+ +
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPF--QGKPRPQVVWTKGGAPL-DTSRVHVRTS 75
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ D G Y + T +++ KAG
Sbjct: 76 DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-13
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 191 KNCEIKEGQRAHFECRLI--PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC 248
+ K G++ + P +V W P+ + SR + + Q
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKP----RPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQA 86
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
DSG Y + + + V K
Sbjct: 87 ARSDSGEYELSVQIENMKDTATIRIRVVEK 116
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 5e-13
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 312 VSQAPVFTQP---MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
+++ P P + + + G + +V W + G P+ ++RV
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPF--QGKPRPQVVWTKGGAPLD-TSRVHVRT 74
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ DSG Y E + + + V K
Sbjct: 75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+V W K G P+ DF V + DSG Y ++
Sbjct: 55 QVVWTKGGAPLDTSRVHVRTSDFDTV-FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-15
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ + + G C VG P +WF+NE PL ++
Sbjct: 3 KLQICVEPTSQ-KLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKL-------- 51
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ +V E +G Y C N +
Sbjct: 52 -YMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 12/95 (12%), Positives = 21/95 (22%), Gaps = 11/95 (11%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
+ + VG W +N +P+ +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKL------- 51
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
Y E GTY C N+ + +
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 11/92 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ ++ G +C V +WF N +P+ ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKL---------Y 52
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ E G Y C N + ++
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-11
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
K T ++M G + C V G P ++WF N + L ++
Sbjct: 3 KLQICVEPTSQ-KLMPGSTLVLQCVAV--GSPIPHYQWFKNELPLTHETKK--------- 50
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
+ G Y C N S
Sbjct: 51 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 82 LKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+WFKN P+T + + E GTY C N + +
Sbjct: 33 PHYQWFKNELPLTHETKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 7e-15
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN- 362
+ + AP P ++ E + ++W R+G + +SN
Sbjct: 8 SALVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNY 64
Query: 363 -RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + L D G Y C AVN +G+ L
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-14
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFG 560
P P + EG + +C P+ + WFR+ + L S S I +
Sbjct: 19 APKLQGP-VAV-YTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPS 74
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
++++ D G Y C A N +G+ +
Sbjct: 75 ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-14
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGF 240
AP EG + + C + + + WF + + S S N
Sbjct: 19 APKLQGP-VAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L++ D G Y C AVN +GQ L+
Sbjct: 76 SYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG--SRFHVQHDFGYVTLDITKCVPA 704
EG + C V P+ WF +G L S + + L++T
Sbjct: 29 YTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN 86
Query: 705 DSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
D G Y C A+NR G+ L
Sbjct: 87 DFGNYNCTAVNRIGQESLEFILVQADTPS 115
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFR-PIHDFGYVA 109
+ P ++ E + C V + + WF++G+ + + I++ +
Sbjct: 21 KLQGPVAVY-TWEGNQVNITC---EVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 110 -LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L++ D G Y C AVN +G ++ L
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-14
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-----HD 690
P T L V G+P +WF NG L + H
Sbjct: 5 PTITFL----ESPTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
+ L + ++G Y A N G+ S I
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-14
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTM-----HDFGYVALNFKYTYPEDSGTYTCRAVNELG 397
G+ K + W NG + S + T H + L ++G YT A NE G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 398 EAVTSSTLFVESK 410
+ +
Sbjct: 87 KDEKQISAHFMGW 99
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-----HD 558
P T +++ + + G+P ++WF N L +S I TK H
Sbjct: 5 PTITF----LESPTSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + L + + G Y A N G+ S
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-12
Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 15/97 (15%)
Query: 194 EIKEGQRAHFECRL----IPVSDNTMKVEWFHNNVPIKSGSRFT-----ETNNFGFVALD 244
+ P ++WF+N + + L
Sbjct: 12 SPTSDHHWCIPFTVKGNPKP------ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQ 65
Query: 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
+ ++G YT A N G+ + I
Sbjct: 66 LDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 4e-11
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 53 VTKPKSIENLR---ERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPI--- 102
V +I L H ++ P ++WF NG +
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKP------ALQWFYNGAILNESKYICTKIHV 54
Query: 103 --HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
H + L + + ++G YT A N G E Q +
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-14
Identities = 32/224 (14%), Positives = 57/224 (25%), Gaps = 61/224 (27%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ + + C+ ++ ++WFHN I + ++
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQ----------PS 53
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
+ DSG YTC+ SLS L
Sbjct: 54 YRFKANNNDSGEYTCQTGQT--------------------------SLSDPVHL------ 81
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
TV + Q + E + +KVT+ +NG + S+
Sbjct: 82 -------TVLFEWLVLQT-PHLEFQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHL 132
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
T + SG Y C +S + +
Sbjct: 133 DPT--------FSIPQANHSHSGDYHCTGNIGYTL-FSSKPVTI 167
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 29/215 (13%), Positives = 52/215 (24%), Gaps = 61/215 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V + + +C+ + ++WF N + ++ + D G
Sbjct: 16 VLQEDSVTLTCQ-GARSPESDSIQWFHNGNLIPTHTQPSY----------RFKANNNDSG 64
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C+ L
Sbjct: 65 EYTCQTGQTSLSDPVH------------LTVLFE-------------------------- 86
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ Q T E EG++ C P ++ +F NG K T
Sbjct: 87 WLVLQ--TPHLEFQEGETIMLRCHS-WKDKPLVKVTFFQNGKSQKFSHLDP--------T 135
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
I + + SG Y C S ++ V+
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 9e-10
Identities = 32/199 (16%), Positives = 48/199 (24%), Gaps = 61/199 (30%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127
C+ + + ++WF NG + + DSG YTC+
Sbjct: 22 VTLTCQGARSPE-SDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQT 70
Query: 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187
TS + L + + E Q P
Sbjct: 71 GQ--------------------TSLSDPVHL-TVLF-------------EWLVLQTP--- 93
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
+ E +EG+ C +KV +F N K I Q
Sbjct: 94 ----HLEFQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHLDPT--------FSIPQ 140
Query: 248 CLPEDSGVYTCRAVNALGQ 266
SG Y C
Sbjct: 141 ANHSHSGDYHCTGNIGYTL 159
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-14
Identities = 24/232 (10%), Positives = 61/232 (26%), Gaps = 76/232 (32%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL----------EDSSRITTKHDFGYVAMD 565
++G +C +++ W + + + S++ + D D
Sbjct: 7 GKKGDTVELTCT--ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 566 -------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQEL 618
+ +++ ED YIC+ + E ++
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV-------------------------QLLVF 99
Query: 619 EQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVE 678
A+ + +++GQS + + +
Sbjct: 100 GLTANS--------------------DTHLLQGQSLTLTLESP--PGSSPSVQCRSPRGK 137
Query: 679 LKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G + TL +++ DSG + C + + + V +
Sbjct: 138 NIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 2e-10
Identities = 28/216 (12%), Positives = 55/216 (25%), Gaps = 50/216 (23%)
Query: 196 KEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG 254
K+G C S +++ W ++N G++ + L +
Sbjct: 8 KKGDTVELTCT---ASQKKSIQFHWKNSNQIKILGNQGSF--------------LTKGPS 50
Query: 255 VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ---RTSIIEDT 311
RA + L+ + L+ + Y E
Sbjct: 51 KLNDRADSRRSLWDQGNFPLI---------------IKNLKIEDSDTYICEVEDQKEEVQ 95
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
+ + D H+ + Q+ L S V +
Sbjct: 96 LLVFGLTANS--DTHLLQGQSLTLT--LESPPGSSPSVQCRSPRGKNIQGGKT------- 144
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L+ +DSGT+TC + + + V
Sbjct: 145 ---LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 27/227 (11%), Positives = 58/227 (25%), Gaps = 77/227 (33%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH-----------------DFGYVAL 110
C +++ W + + +G++ + D G L
Sbjct: 13 VELTCTASQK--KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKY 170
I + EDS TY C +++ Q+
Sbjct: 71 IIKNLKIEDSDTYICEV-------------------------EDQKEEVQLLVFG----- 100
Query: 171 QRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS 230
T+ + + +GQ ++ V+ G
Sbjct: 101 ----------------LTANSDTHLLQGQSLTLTLE--SPPGSSPSVQCRSPRGKNIQGG 142
Query: 231 RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ L + Q +DSG +TC + + +++V +
Sbjct: 143 K----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 40 ENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF 99
E+ K++ + + +T L + + P S+ V+ G +
Sbjct: 88 EDQKEEVQLLVFGLTANSDTH-LLQGQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGK- 143
Query: 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
L + +DSGT+TC + E + +
Sbjct: 144 ---------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-----------------QHDFG 692
+G + C +++F W + +G++ D G
Sbjct: 9 KGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735
L I DS Y+C+ ++ E V + + SD
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH 108
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-14
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL--IPVSDNTMKVEWFHNN---VPIKSGSRFT---- 233
+F ++ E+ G F R+ + V+WF + K G
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLK-PPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 234 --ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ L I P +G Y C ++ NL VH
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 7e-12
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK---VEWFRN---EKPLEDSSRITTKH 557
+F Q+ V G + FS R+ G LK V+WF+ + + +
Sbjct: 5 GLFVMRPQDG-EVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 558 DF------GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + ++ + G Y C+ + + ++ +
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 3e-11
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR---FEWF---VNGVELKMGSRFHVQH 689
+F E+ G S + RV G ++ +WF + K+G +
Sbjct: 5 GLFVMRPQDG-EVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 690 DF------GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ L IT PA +G Y C+ + S+ +L V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 9e-11
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK---VTWLRN---------GVPIQASN 362
+F +D V + F AR+ G S LK V W + G +Q +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 363 RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L+ P +G+Y C + ++ L V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 1e-10
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKN---------GRPVTIGHRFRPI 102
V +P+ E G F ++ + V+WFK G+ + + +
Sbjct: 8 VMRPQDGEVT-VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 103 HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I D P +G+Y C F L
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 5e-14
Identities = 37/377 (9%), Positives = 66/377 (17%), Gaps = 103/377 (27%)
Query: 68 AHFECKLEPVTDSN--LKVEWFKNGRPVTI-----------------GHRFRPIHD-FGY 107
C S +V W K+ R + F
Sbjct: 32 VVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDK 167
+ + ED G Y C ++
Sbjct: 92 GTIRLSRLELEDEGVYICEFATFPT--------------------------------GNR 119
Query: 168 SKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK 227
+ + T L+ + ++ + C V W
Sbjct: 120 ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCT-SANGKPPSVVSWETRLKGEA 178
Query: 228 SGSRFTETNNFGFVA--LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
N V ++ C + + S L V
Sbjct: 179 EYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ--------- 229
Query: 286 QHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT-QPMRDIHVAENQAAHFE--ARLIPV 342
P T + + A P
Sbjct: 230 ----------------------------YEPEVTIEGFDGNWYLQRMDVKLTCKADANP- 260
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
+ W + +GTY C A N +G
Sbjct: 261 --PATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYSLAGTYICEATNPIGTRSGQ 313
Query: 403 STLFVESKASLQLDTQN 419
+ + A+L+ +
Sbjct: 314 VEVNITEAAALEHHHHH 330
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 8e-14
Identities = 44/332 (13%), Positives = 81/332 (24%), Gaps = 55/332 (16%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSK--LKVTWLRNG-----------------V 356
Q ++ S +VTW ++ V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 357 PIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415
RV + F + ED G Y C + L L
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE---------SQLNL 125
Query: 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVT-------QQPSFT--VQLNGPTELVEGEG 466
+ K ++++ + T + +L G E E
Sbjct: 126 TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN 185
Query: 467 TIITDTQHPKGLEKIRKLEDTEP------HKRPEVDDNAT---KQRPVFTKPLQNIDAVE 517
T T + + + + ++ T + P T + +
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYL 245
Query: 518 EGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576
+ + +C+ +P + W L + F + G
Sbjct: 246 QRMDVKLTCKA--DANPPATEYHWTTLNGSLPKGVEAQNRTLF-----FKGPINYSLAGT 298
Query: 577 YICKATNALGEAVTTASMKIKTKAGLQLETQH 608
YIC+ATN +G + I A L+ H
Sbjct: 299 YICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 5e-13
Identities = 28/234 (11%), Positives = 54/234 (23%), Gaps = 49/234 (20%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS- 567
+ ++ K +C G P V W K + I + V
Sbjct: 140 AVLRAKKGQDDKVLVATCT-SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRL 198
Query: 568 -HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
R + C + + L Q+
Sbjct: 199 VPSREAHQQSLACIVNYHMDRFKESL----------TLNVQYE----------------- 231
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRF 685
P T + ++ C+ +P + W L G
Sbjct: 232 ---------PEVTIEGFDGNWYLQRMDVKLTCKAD--ANPPATEYHWTTLNGSLPKGVEA 280
Query: 686 HVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ TL + + +G Y+C+A N G + + + +
Sbjct: 281 QNR------TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHH 328
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 1e-11
Identities = 29/262 (11%), Positives = 56/262 (21%), Gaps = 55/262 (20%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKPLEDSSRITTKHDFGY 561
+ ++ G + C +V W ++ + + I
Sbjct: 15 SQVVQVNDSMYGFI-GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 562 VAMD------------------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQ 603
V LS + EDEG+YIC+ + L
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE---------SQLN 124
Query: 604 LETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV 663
L P + + + + + + C
Sbjct: 125 LTVMAK----------------PTNWIEGTQAVLRAK------KGQDDKVLVATCT-SAN 161
Query: 664 GDPTMRFEWFVNGVELKMGSRFHVQHDFGYV--TLDITKCVPADSGVYMCKAINRAGEAV 721
G P W + V + A C
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 722 SSTSLKVKSKSDIVSESLQPDA 743
S +L V+ + ++ E +
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNW 243
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 29/247 (11%), Positives = 48/247 (19%), Gaps = 56/247 (22%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNN-----------------V 224
+ G C + +V W + V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 225 PIKSGSRFTETNN-FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG-NLLVHSKKSIQ 282
R F + + + ED GVY C S NL V +K +
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV 342
E +R +++
Sbjct: 135 IEGT--------------------------------QAVLRAKKGQDDKVLVATCT-SAN 161
Query: 343 GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA--LNFKYTYPEDSGTYTCRAVNELGEAV 400
G V+W + + V + + C +
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 401 TSSTLFV 407
S TL V
Sbjct: 222 ESLTLNV 228
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 14/90 (15%)
Query: 56 PKSIENLRERGHAHFECKLEPVTDSN---LKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+R CK D+N + W + G + L
Sbjct: 238 GFDGNWYLQRMDVKLTCK----ADANPPATEYHWTTLNGSLPKGVEAQNRT------LFF 287
Query: 113 IDTI-PEDSGTYTCRAVNLVGFAEVQATLQ 141
I +GTY C A N +G Q +
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVN 317
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 6e-14
Identities = 33/231 (14%), Positives = 59/231 (25%), Gaps = 59/231 (25%)
Query: 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGFVA--------- 242
++ E +P+ W+ N +RF +N F
Sbjct: 10 QVAEDNNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 243 -----LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297
L +D GVYT +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTD----------------------------------- 92
Query: 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP 357
E R + ++ + + V E + D + WL N
Sbjct: 93 ENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL---SNDIGANIQWLFNSQS 149
Query: 358 IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFV 407
+Q + R++ + L ED+G Y C N + ++S L +
Sbjct: 150 LQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-13
Identities = 31/230 (13%), Positives = 54/230 (23%), Gaps = 59/230 (25%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED----SSRITTKHDFGYVA-------- 563
V E N +P+ W++ D + +F A
Sbjct: 11 VAEDNNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 564 ----MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619
+ + +D G+Y T+ ++
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQ----------------------ATVRFHV 106
Query: 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679
P + + E S C D +W N L
Sbjct: 107 HQPVTQPFLQVTN-------------TTVKELDSVTLTCLS---NDIGANIQWLFNSQSL 150
Query: 680 KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKV 728
++ R + + L I D+G Y C+ N S S L +
Sbjct: 151 QLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 5e-10
Identities = 28/223 (12%), Positives = 50/223 (22%), Gaps = 59/223 (26%)
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV------------ 108
+ E + P+ W+K R + +
Sbjct: 10 QVAEDNNVLLLVHNLPLALGA--FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 109 ----ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164
+L +D G YT +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENY-------------------------------- 95
Query: 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV 224
+ + + N +KE C +D ++W N+
Sbjct: 96 ----RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL---SNDIGANIQWLFNSQ 148
Query: 225 PIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267
++ R T + N L I ED+G Y C N +
Sbjct: 149 SLQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVR 189
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 8e-10
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550
+ V + + + N V+E + +C D ++W N + L+ +
Sbjct: 98 TQATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTCL---SNDIGANIQWLFNSQSLQLT 153
Query: 551 SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588
R+T + + + ++ ED G Y C+ +N +
Sbjct: 154 ERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVR 189
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDS 120
++E C D ++W N + + + R + L I ED+
Sbjct: 121 TVKELDSVTLTCL---SNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKREDA 175
Query: 121 GTYTCRAVNLVGFAEVQ 137
G Y C N V
Sbjct: 176 GEYQCEISNPVSVRRSN 192
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 8e-14
Identities = 45/330 (13%), Positives = 79/330 (23%), Gaps = 105/330 (31%)
Query: 83 KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+V + + F A + E + TC + E T+
Sbjct: 37 QVHLALGDQRLNPTVT-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV-- 93
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAH 202
T P L E+ EG
Sbjct: 94 ------------------------------------TIYSFPAPNVILTKPEVSEGTEVT 117
Query: 203 FECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG-VYTCRAV 261
+C P + + N VP + + +++ PED+G ++C A
Sbjct: 118 VKCEAHP------RAKVTLNGVPAQPLGPRAQL---------LLKATPEDNGRSFSCSAT 162
Query: 262 NALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321
+ + + E V P +
Sbjct: 163 LEVAGQLIH---------------------------------KNQTRELRVLYGPRLDER 189
Query: 322 M--RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKY 379
+ EN + G+ ++ L++G T+
Sbjct: 190 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTVT----------- 236
Query: 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ GTY CRA + GE T+ V S
Sbjct: 237 --RDLEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 1e-11
Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 41/261 (15%)
Query: 345 SKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY-PEDSGTYTCRAVNELGEAVTSS 403
S+ +V + + V+ +D + T E + TC + T
Sbjct: 34 SEAQVHLALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 91
Query: 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVT--QQPSFTVQLNGPTEL 461
T+ + S + + E EV V P V LNG
Sbjct: 92 TVTIYSFPAPNVILTKPEVS---------------EGTEVTVKCEAHPRAKVTLNGVPAQ 136
Query: 462 VEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQ-----RPVFTKPLQNIDA- 515
G + P+ + T + N T++ P + +
Sbjct: 137 PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 196
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
E C+ G+P +++ ++ T V + EG
Sbjct: 197 WPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVT-------------VTRDLEG 241
Query: 576 IYICKATNALGEAVTTASMKI 596
Y+C+A + GE ++ +
Sbjct: 242 TYLCRARSTQGEVTREVTVNV 262
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 6e-11
Identities = 28/216 (12%), Positives = 51/216 (23%), Gaps = 62/216 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V EG C P + + + + + L ++
Sbjct: 110 VSEGTEVTVKCEAHP--RAKVTLNGVPAQPLGPRAQLL------------LKATPEDNGR 155
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
+ C AT + + + +L + P P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTR------ELRVLYG-----------PRLDERDCPGNW--- 195
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG-VELKMGSRFHVQHDFGYV 694
E C+ G+P + +G L +G V
Sbjct: 196 -----------TWPENSQQTPMCQAW--GNPLPELKCLKDGTFPLPIGESVTVT------ 236
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
G Y+C+A + GE ++ V S
Sbjct: 237 --------RDLEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-08
Identities = 32/244 (13%), Positives = 65/244 (26%), Gaps = 70/244 (28%)
Query: 40 ENAKKKKNFIYYTVTKPKSIE---NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG 96
++ + + Y+ P I + E +C+ P + + NG P
Sbjct: 85 QSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHP------RAKVTLNGVPAQPL 138
Query: 97 HRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNET 156
L + T ++ +++C A V + +N+T
Sbjct: 139 G--------PRAQLLLKATPEDNGRSFSCSATLEVAGQLI---------------HKNQT 175
Query: 157 GLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK--NCEIKEGQRAHFECRLIPVSDNT 214
++ Y P N E + C+ N
Sbjct: 176 RELRVLY-------------------GPRLDERDCPGNWTWPENSQQTPMCQ---AWGNP 213
Query: 215 M-KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
+ +++ + G+ V + G Y CRA + G+ +
Sbjct: 214 LPELKCLKD------GTFPLPIGESVTVT-------RDLEGTYLCRARSTQGEVTREVTV 260
Query: 274 LVHS 277
V S
Sbjct: 261 NVLS 264
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 29/218 (13%), Positives = 55/218 (25%), Gaps = 57/218 (26%)
Query: 194 EIKEGQRAHFECRL---IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP 250
++ + C L PVS+ V + + ++F A +
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQ--VHLALGDQRLNPTVT-YGNDSFSAKASVSVTAED 70
Query: 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIED 310
E + TC + T + ++S
Sbjct: 71 EGTQRLTCAVILGNQSQETLQTVTIYS--------------------------------- 97
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
P + V+E + P + NGVP Q +
Sbjct: 98 ----FPAPNVILTKPEVSEGTEVTVKCEAHP------RAKVTLNGVPAQPLGPRAQ---- 143
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K T ++ +++C A E+ + E
Sbjct: 144 ----LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 30/217 (13%), Positives = 53/217 (24%), Gaps = 57/217 (26%)
Query: 516 VEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+E C L + +V ++ L + +T +D + A V AEDE
Sbjct: 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGND-SFSAKASVSVTAEDE 71
Query: 575 G--IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQ 632
G C T ++ I + + P
Sbjct: 72 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKP----------------------- 108
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
E+ EG C P R + +NGV +
Sbjct: 109 --------------EVSEGTEVTVKCEAHP------RAKVTLNGVPAQPLG--------P 140
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L + + + C A + + +
Sbjct: 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-13
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 513 IDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH--- 568
+ H C V G P + W N L ++S I T+ + H
Sbjct: 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 569 ----VRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G Y A N G+A +
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-12
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 647 EIMEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKMGSRFHVQ-------HDFGYVTLDI 698
++ H+ C V G P W NG L S + + L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
+ ++G Y A N G+A +S +
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 2e-12
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 194 EIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRF-------TETNNFGFVALDI 245
++ H C V + W N + S L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
Q ++G YT A N GQA S
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 6e-11
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 325 IHVAENQAAHFEARLIPV-GDSKLKVTWLRNGVPIQASNRVSTM-------HDFGYVALN 376
+ + H V G + WL NG + ++ + T + L
Sbjct: 7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66
Query: 377 FKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
++G YT A N G+A S
Sbjct: 67 LNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-10
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 8/96 (8%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPI-------HDF 105
+ + L H C V + W NG +
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 106 GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ L + ++G YT A N G A
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-13
Identities = 34/226 (15%), Positives = 59/226 (26%), Gaps = 61/226 (26%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
Q P + + I +G+ C + + +WFHN + +
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEETNS---------- 51
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGR 301
+L+I+ EDSG Y C+
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQ--------------------------------------- 72
Query: 302 YQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS 361
+ + V + Q V E Q KV + ++G ++
Sbjct: 73 VNESEPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCH-GWRNWDVYKVIYYKDGEALKYW 130
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
++ EDSGTY C + S L +
Sbjct: 131 YENHN--------ISITNATVEDSGTYYCTGKVWQLD-YESEPLNI 167
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-12
Identities = 33/229 (14%), Positives = 58/229 (25%), Gaps = 62/229 (27%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
Q+P + + +G+N +C +WF N E+++
Sbjct: 3 QKPKVSLNPPWNR-IFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEETNSSLN------ 54
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621
+ + + ED G Y C+ +
Sbjct: 55 ----IVNAKFEDSGEYKCQHQQVNESE-------------------------PVYLEVFS 85
Query: 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM 681
+ Q +MEGQ C + ++ +G LK
Sbjct: 86 DWLLLQASA---------------EVVMEGQPLFLRCHG-WRNWDVYKVIYYKDGEALKY 129
Query: 682 GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
H + IT DSG Y C + S ++ V
Sbjct: 130 WYENH--------NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 30/197 (15%), Positives = 51/197 (25%), Gaps = 61/197 (30%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
C + + +WF NG + +L+I++ EDSG Y C+
Sbjct: 24 LTCNGNNFFEVS-STKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQ 72
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
+ V + + + QA
Sbjct: 73 VNESEPVYLEV----------------------------------FSDWLLLQAS----- 93
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
+ EGQ C + + KV ++ + +K + I
Sbjct: 94 --AEVVMEGQPLFLRCH-GWRNWDVYKVIYYKDGEALKYWYENHN--------ISITNAT 142
Query: 250 PEDSGVYTCRAVNALGQ 266
EDSG Y C
Sbjct: 143 VEDSGTYYCTGKVWQLD 159
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 3e-13
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-----D 558
P + ++ V +G+ A +C+ G PT +EW++ + +E H
Sbjct: 10 PRIVEHPSDL-IVSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 559 FGYVAMDLSHVRA--EDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQH 608
+ + H R DEG+Y+C A N LGEAV+ AS+++ A H
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA--HHHHHH 117
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 9e-11
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH--- 368
P + D+ V++ + A + G + W + G ++ H
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCK--AEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 369 ----DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFVESKAS 412
++ + D G Y C A N LGEAV+ +L V + A
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-10
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-----GSR 684
++ P + + + +G+ A +C+ G PT EW+ G ++ S
Sbjct: 4 RQEDFPPRIVEHPSDLI-VSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 685 FHVQHDFGYVTLDI--TKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDIVS 736
+ L I + D GVY+C A N GEAVS SL+V + +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLI----PVSDNTMKVEWFHNNVPIKS-----GSRFT 233
P + + +G+ A C+ P +EW+ +++ S
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTP------TIEWYKGGERVETDKDDPRSHRM 62
Query: 234 ETNNFGFVALDIMQCL--PEDSGVYTCRAVNALGQAVT-SGNLLVHSKKSIQTETQH 287
+ L I+ D GVY C A N LG+AV+ +L V + H
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH--HHHH 117
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 53 VTKPKSIENLRERGHAHFECKLE----PVTDSNLKVEWFKNGRPVTIGHRFRPIH----- 103
V P + + + A CK E P +EW+K G V H
Sbjct: 13 VEHPSDLI-VSKGEPATLNCKAEGRPTP------TIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 104 --DFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQ 141
++ + D G Y C A N +G A A+L+
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 5e-13
Identities = 33/249 (13%), Positives = 67/249 (26%), Gaps = 37/249 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLI-PVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P T + V G++ C + +V+W ++ + S + + V
Sbjct: 6 PGLTVSSPQLR-VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 563 AMD--------------------LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGL 602
L V+ DEGIY C+ V +++
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 603 QLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP 662
+ + G ++ ++ + M +H + V
Sbjct: 125 PRDLRVRVG--DTTQMRCSIQSTEEKRVTKVNW-------------MFSSGSHTEEETVL 169
Query: 663 VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722
D MR F + + ++ + +D G+Y C E+
Sbjct: 170 SYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK 229
Query: 723 STSLKVKSK 731
+ L V
Sbjct: 230 TIVLHVVQD 238
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-10
Identities = 35/253 (13%), Positives = 70/253 (27%), Gaps = 46/253 (18%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH---------------NNVPIK 227
P T S + G+ C + + +V+W +N+ +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 228 SGS-----RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
+G +L + D G+YTC V + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125
Query: 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ---APVFTQPMRDIHVAENQAAHFEARL 339
R R + + T + + + ++ + +H E
Sbjct: 126 ------------------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET 167
Query: 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDF--GYVALNFKYTYPEDSGTYTCRAVNELG 397
+ DS ++ ++ + NRV D ++ + D G YTC
Sbjct: 168 VLSYDSNMRSGKFQS--LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKL 225
Query: 398 EAVTSSTLFVESK 410
E+ + L V
Sbjct: 226 ESRKTIVLHVVQD 238
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 1e-07
Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 21/209 (10%)
Query: 72 CKLEPVTDSNLKVEWFKNGRPVTIGH-----RFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ D++ V ++ + V G +L + D D G YTC
Sbjct: 43 LFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCE 102
Query: 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186
++ ++ L + + + G+ + +
Sbjct: 103 IRLKNESMVMKKPVE----------------LWVLPEEPRDLRVRVGDTTQMRCSIQSTE 146
Query: 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIM 246
+ +H E + D+ M+ F + ++ T + ++ +
Sbjct: 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ 206
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
D G+YTC ++ + L V
Sbjct: 207 TVKESDQGIYTCSIYVGKLESRKTIVLHV 235
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 5e-13
Identities = 28/225 (12%), Positives = 60/225 (26%), Gaps = 68/225 (30%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFH------------NNVPIKSGSRFTETNNFGFVALDI 245
GQ + + +SD+ ++W K + N L I
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKI 70
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRT 305
+D +Y + G+ V +
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK----------------------------- 101
Query: 306 SIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS 365
I++ VS+ P + + + E + + ++ ++G ++ S RV
Sbjct: 102 --IQERVSK-PKISWTCINTTL------TCEV----MNGTDPELNLYQDGKHLKLSQRVI 148
Query: 366 TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
T S + C A N++ + + + K
Sbjct: 149 THK-----------WTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 9e-13
Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 68/225 (30%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFR------------NEKPLEDSSRITTKHDFGYVAMDL 566
G++ + + D ++W + ++ ++ + + +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKI 70
Query: 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626
H++ +D+ IY + G+ V ++ E+ + P
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIF-------------------DLKIQERVSKP-- 109
Query: 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH 686
+ C V+ DP + + +G LK+ R
Sbjct: 110 -------------------KISWTCINTTLTCEVMNGTDPELN--LYQDGKHLKLSQR-- 146
Query: 687 VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ K + S + C A N+ + S + K
Sbjct: 147 ---------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 22/215 (10%), Positives = 49/215 (22%), Gaps = 63/215 (29%)
Query: 68 AHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP---------IHDFGYVALDIIDTIPE 118
+ + ++D ++W K I + F L I +
Sbjct: 17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76
Query: 119 DSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEE 178
D Y + G ++ ++ E SK
Sbjct: 77 DQDIYKVSIYDTKGKNVLEKIFD-------------------LKIQERVSK--------- 108
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
P + C ++ +D + + + +K R
Sbjct: 109 -----PKISW--------TCINTTLTCEVMNGTDPE--LNLYQDGKHLKLSQRVI----- 148
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273
+ S + C A N + + + +
Sbjct: 149 ------THKWTTSLSAKFKCTAGNKVSKESSVEPV 177
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577
N +C + + ++ +++ K L+ S R+ +
Sbjct: 114 TCINTTLTCEV--MNGTDPELNLYQDGKHLKLSQRVI-----------THKWTTSLSAKF 160
Query: 578 ICKATNALGEAVTTASMKIKTK 599
C A N + + + + K
Sbjct: 161 KCTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
I V+KPK + C++ TD L +++G+ + + R
Sbjct: 102 IQERVSKPKIS---WTCINTTLTCEVMNGTDPELN--LYQDGKHLKLSQR---------- 146
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+ S + C A N V + C
Sbjct: 147 -VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNG------------VPIQASNRVSTMHDFG 371
+ A Q + + + D + W + + + +
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG- 66
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L K+ +D Y + G+ V ++
Sbjct: 67 --TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 607 QHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP 666
PE ++ + + P +P + + EG + + CR GDP
Sbjct: 358 ATPEFVQGKEFKDFPDVLLPNYFTC--RRARIRDRKAQQVFVDEGHTVQFVCRAD--GDP 413
Query: 667 TMRFEWFV-NG--VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
W V K R V D G TL++ D+G Y+C A N G
Sbjct: 414 PPAILWLSPRKHLVSAKSNGRLTVFPD-G--TLEVRYAQVQDNGTYLCIAANAGGNDSMP 470
Query: 724 TSLKVKS 730
L V+S
Sbjct: 471 AHLHVRS 477
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN---VPIKSGSRFTETNNF 238
+A I + + EG F CR D + W V KS R T +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRA--DGDPPPAILWLSPRKHLVSAKSNGRLTVFPD- 440
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
G L++ +D+G Y C A NA G +L V S
Sbjct: 441 GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
P+ + + ++ +D P ++ + + Q + V+EG F CR G
Sbjct: 358 ATPEFV-QGKEFKDFPDVLLPN--YFTCRRARIRDRKAQQVF-VDEGHTVQFVCRA--DG 411
Query: 533 DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAM------DLSHVRAEDEGIYICKATNALG 586
DP + W + + G + + ++ + + +D G Y+C A NA G
Sbjct: 412 DPPPAILWLS------PRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG 465
Query: 587 EAVTTASMKIKT 598
A + +++
Sbjct: 466 NDSMPAHLHVRS 477
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 313 SQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NG--VPIQASNRVSTMHD 369
+A + + + + V E F R GD + WL V +++ R++ D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRA--DGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
G L +Y +D+GTY C A N G + L V S
Sbjct: 441 -GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFR-PIHDFGYVAL 110
+ + E F C+ + D + W V+ R + G L
Sbjct: 388 RDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT--L 443
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
++ +D+GTY C A N G + A L
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 5e-12
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSS----RITTKHD 558
P+ + G+ C + P ++ W E LE + + T
Sbjct: 15 PIISSTQTQH--ALHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 559 FGYVAMDL--SHVRAEDEG-IYICKATNALGEAVTTASMKIKTKA 600
V L S++ D IY C A N+ G +K +
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-10
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGS--RFHVQ---- 688
PI + T T + G+ C + P R W L+ G+ R+ V+
Sbjct: 15 PIISS--TQTQHALHGEKGQIKCFIR--STPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 689 HDFGYVTLDITKCVPAD-SGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
+ TL I+ V AD +Y C A N G LK + S
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 121
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-10
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQASN----RVS 365
TV+ P+ + + H + + + ++ W +++ V
Sbjct: 10 TVNGPPIISST-QTQHALHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVE 66
Query: 366 TMHDFGYVA--LNFKYTYPEDSGT-YTCRAVNELGEAVTSSTLFVESKA 411
T+ V L D T Y C A N G L +
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNNVPIKSGS--RFT---E 234
P +S + G++ +C + ++ W ++SG+ R+T
Sbjct: 12 NGPPIISSTQTQHALHGEKGQIKCF---IRSTPPPDRIAWSWKENVLESGTSGRYTVETI 68
Query: 235 TNNFGFVA-LDIMQCLPED-SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTET 285
+ G ++ L I + D +Y C A N+ G L + +
Sbjct: 69 STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 121
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE--PVTDSNLKVEWFKNGRPVTIGHRFR------PIH 103
++ ++ +C + P D ++ W + G R
Sbjct: 16 IISSTQTQH-ALHGEKGQIKCFIRSTPPPD---RIAWSWKENVLESGTSGRYTVETISTE 71
Query: 104 DFGYVALDIIDTIPEDSGT-YTCRAVNLVGFAEVQATLQCRGSA 146
+ L I + + D T Y C A N G L+ +GS
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 32/224 (14%), Positives = 57/224 (25%), Gaps = 68/224 (30%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V E + C+ + +WF NE + + + D G
Sbjct: 19 VLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQASSYF----------IDAATVNDSG 67
Query: 576 IYICKATNALG-EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
Y C+ + + V LE + Q P +
Sbjct: 68 EYRCQTNLSTLSDPVQ-------------LEVHIG-------------WLLLQAPRWVF- 100
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
E H C + + NG + K
Sbjct: 101 --------------KEEDPIHLRCHS-WKNTALHKVTYLQNGKDRKYFHHNS-------- 137
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
I K DSG Y C+ + + VSS ++ + ++++
Sbjct: 138 DFHIPKATLKDSGSYFCRGLVGSKN-VSSETVNI-----TITQA 175
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 4e-11
Identities = 40/224 (17%), Positives = 66/224 (29%), Gaps = 61/224 (27%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ + + E +C+ ++ +WFHN I S + +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDN-STQWFHNESLISSQAS----------SY 56
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQ 303
I DSG Y C+ + +LS QLE
Sbjct: 57 FIDAATVNDSGEYRCQTNLS--------------------------TLSDPVQLE----- 85
Query: 304 RTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNR 363
V + Q R E H + KVT+L+NG + +
Sbjct: 86 --------VHIGWLLLQAPRW-VFKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHH 135
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
S + +DSG+Y CR + V+S T+ +
Sbjct: 136 NSD--------FHIPKATLKDSGSYFCRGLVGSKN-VSSETVNI 170
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-07
Identities = 28/196 (14%), Positives = 47/196 (23%), Gaps = 61/196 (31%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+C+ + +WF N ++ + I DSG Y C+
Sbjct: 27 LKCQGAYSP-EDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQTNL 75
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
V L+ +L + +
Sbjct: 76 STLSDPV--QLEVHIGWLLLQAPRWV---------------------------------- 99
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
KE H C + KV + N K ++ I +
Sbjct: 100 -----FKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHHNSD--------FHIPKAT 145
Query: 250 PEDSGVYTCRAVNALG 265
+DSG Y CR +
Sbjct: 146 LKDSGSYFCRGLVGSK 161
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-11
Identities = 23/218 (10%), Positives = 54/218 (24%), Gaps = 60/218 (27%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD-------LSHVR 570
G + + + D +V W R + + R + ++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 571 AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPE 630
+D G Y + G + ++ ++ +
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVS--------------------------- 102
Query: 631 RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
KP+ E +A C V+ D ++ + L+ +
Sbjct: 103 ----KPMIY---------WECSNATLTCEVLEGTDVELK--LYQGKEHLRSLRQ------ 141
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
++ + CKA+NR + +
Sbjct: 142 -----KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 3e-10
Identities = 22/219 (10%), Positives = 54/219 (24%), Gaps = 66/219 (30%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI----------KSGSRFTETNNFGFVALDIM 246
G + ++D+ +V W + + F N L I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIK 66
Query: 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTS 306
+DSG Y + G + + L + + +
Sbjct: 67 NLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK----------------------- 103
Query: 307 IIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVST 366
P+ E A + + + +++ + +++ +
Sbjct: 104 ---------PMIY--------WECSNATLTCEV--LEGTDVELKLYQGKEHLRSLRQ--- 141
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
Y + + C+AVN + + +
Sbjct: 142 --------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 61/212 (28%)
Query: 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV-------ALDIIDTIPE 118
+ +TD +V W + V R L I + +
Sbjct: 12 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD 71
Query: 119 DSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEE 178
DSGTY + G + L ++ LE SK
Sbjct: 72 DSGTYNVTVYSTNGTRILNKAL-------------------DLRILEMVSK--------- 103
Query: 179 TTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
P+ N A C + + ++++ + ++S + T + +
Sbjct: 104 -----PMIYWECSN--------ATLTCEV--LEGTDVELKLYQGKEHLRSLRQKTMSYQW 148
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
+ C+AVN + Q
Sbjct: 149 T-----------NLRAPFKCKAVNRVSQESEM 169
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 325 IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV-------ALNF 377
+ A + + D +V W R + R L
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQ 414
K +DSGTY + G + + L + +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS 102
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 3e-05
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL----------KMGSRFHVQHDFGYVTLDI 698
G + + + D W + F + + L I
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKI 65
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
DSG Y + G + + +L ++
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 98
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
I V+KP A C++ TD LK ++ + +
Sbjct: 97 ILEMVSKPMIYWECSN---ATLTCEVLEGTDVELK--LYQGKEHLRSLRQ---------- 141
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQC 142
+ + C+AVN V + C
Sbjct: 142 -KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 3e-11
Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 35/191 (18%)
Query: 79 DSNLKVEWFKNGRPVTIGH-RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137
DS+ ++W KNG+ + H + + DF V EDSG Y C +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPA----SNKN 70
Query: 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197
L + G + + + + + ++ +Q ++ +
Sbjct: 71 TYLYLKARVGSADDAKKDAAKKDD---------AKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYT 257
C ++W + I + T N G A D G Y
Sbjct: 122 DGSVLLTC-----GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD-------PRGTYQ 169
Query: 258 CRAVNALGQAV 268
C+ +
Sbjct: 170 CQGAKETSNPL 180
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-10
Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 38/204 (18%)
Query: 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIY 577
G + +C L D ++W +N + L + DF ED G Y
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQDFS---------EVEDSGYY 60
Query: 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI 637
+C + + +K + G + + K + + Q + + +
Sbjct: 61 VCYTPASNKNT----YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQV 116
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD 697
S C G +W +G + + + G D
Sbjct: 117 DG--------SRGDGSVLLTC-----GLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163
Query: 698 ITKCVPADSGVYMCKAINRAGEAV 721
G Y C+ +
Sbjct: 164 -------PRGTYQCQGAKETSNPL 180
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-10
Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 40/205 (19%)
Query: 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-SRFTETNNFGFVALDIMQCLPEDSGVY 256
G C L D+ ++W N + + +F V EDSG Y
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYY 60
Query: 257 TCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAP 316
C + V S + + + + + G
Sbjct: 61 VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDG---------------- 104
Query: 317 VFTQPMRDIHVAENQAAHFEARLI-PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+Q + ++ + + + ++ G + + WL++G I N + G A
Sbjct: 105 --SQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAK 162
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAV 400
+ GTY C+ E +
Sbjct: 163 -------DPRGTYQCQGAKETSNPL 180
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 344 DSKLKVTWLRNGVPIQASNRVS-TMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS 402
DS + W +NG + + + DF V EDSG Y C +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPASNK----N 70
Query: 403 STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQP 449
+ L+++++ D + +AA + +D + + + + Q
Sbjct: 71 TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-10
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
+ T Q +V G + F C P + W R + ++ ++
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRL-----HNGKLPSRAMDFNGI 63
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + +V+ D G Y+C +N TA++ ++
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 5e-10
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 8/100 (8%)
Query: 311 TVSQAPVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368
P+ + R V F + W R S +
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62
Query: 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L + P D+GTY C N ++TL V+
Sbjct: 63 -----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-09
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 626 PQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF 685
P +P + T + + G + C P W + SR
Sbjct: 6 PSKP------IMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGK-LPSRA 57
Query: 686 HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ L I P+D+G Y+C N + +L V+
Sbjct: 58 MDFNG----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 10/101 (9%)
Query: 179 TTTQAPIFTT--SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF-HNNVPIKSGSRFTET 235
PI T ++ ++ G F C + W +N + S +
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I P D+G Y C N + L V
Sbjct: 63 I------LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE---PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV 108
TV + +S +R F C + P + W +
Sbjct: 13 TVEEQRSQS-VRPGADVTFICTAKSKSPAY----TLVWTRLHNGKLPSRAMDFNG----- 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I + P D+GTY C N+ + ATL
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 2e-10
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--------RFHVQHDFGYVTLDI 698
E+ G+ +C + + F W + + + + TL I
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+D G+Y C A + +ST ++V K
Sbjct: 79 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-09
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE--------T 235
+ + E+ G++ C + + W + + +
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQH 287
L I D G+YTC A + L S + VH K + +
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM 120
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-07
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 9/114 (7%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-------- 554
V P I+ + G+ +C + + W + +
Sbjct: 8 YDVVLSPSHGIE-LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 555 TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQH 608
++ + + V D+G+Y C A++ L + +++ K + +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM 120
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-07
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 8/113 (7%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS--------TM 367
V P I ++ + + + W Q V+ +
Sbjct: 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 68
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNE 420
L D G YTC A + L S+ + V K + + E
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME 121
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 16/118 (13%), Positives = 26/118 (22%), Gaps = 8/118 (6%)
Query: 47 NFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR------ 100
IY V P L C + + W
Sbjct: 5 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 64
Query: 101 --PIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNET 156
L I D G YTC A + + + ++ + + E+
Sbjct: 65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 122
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-10
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH---DFG 560
P T + G + F+C D + W + + L+D+ H G
Sbjct: 11 PQITVQPETQS-AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 561 YVAMD-----LSHVRAEDEGIYICKATNALGEAVTT 591
+ L +V EG Y C +N G + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 7e-08
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS---RFHVQH 689
+ P T S + G + C D M F W + L+ H++
Sbjct: 8 FPXPQITVQPETQS-AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 690 DFGYV-----TLDITKCVPADSGVYMCKAINRAGEAVSS 723
G + L + G Y C N G + S
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 3e-07
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI-----KSGSRFTETNNF 238
P T + G F C SD+ M W +N + ++ +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 239 GFVA---LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLL-VH 276
L + G Y C N G + + L ++
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-06
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG 371
P T F DS + W + +Q + + H
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 372 YVALNFKYTY--------PEDSGTYTCRAVNELGEAVTS 402
+YT G Y C N G + +
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 38/228 (16%), Positives = 64/228 (28%), Gaps = 61/228 (26%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ + + E +C+ ++ +WFHN I S +
Sbjct: 4 DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQAS-------- 54
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQ 299
+ I +DSG Y C+ + +LS QL
Sbjct: 55 --SYFIDAATVDDSGEYRCQTQLS--------------------------TLSDPVQL-- 84
Query: 300 GRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359
V + Q E H + KVT+L+NG +
Sbjct: 85 -----------EVHIGWLLLQA-PRWVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKGRK 131
Query: 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ S +DSG+Y CR + V+S T+ +
Sbjct: 132 YFHHNSD--------FYIPKATLKDSGSYFCRGLVGSKN-VSSETVQI 170
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 6e-10
Identities = 37/240 (15%), Positives = 61/240 (25%), Gaps = 63/240 (26%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V E + C+ + +WF NE + + + +D G
Sbjct: 19 VLEKDSVTLKCQGAYSPEDQ-STQWFHNESLISSQASSYF----------IDAATVDDSG 67
Query: 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEK 635
Y C+ +T S + QLE + Q P +
Sbjct: 68 EYRCQTQL------STLSDPV------QLEVHIG-------------WLLLQAPRWVF-- 100
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
E H C + + NG K
Sbjct: 101 -------------KEEDPIHLRCHS-WKNTALHKVTYLQNGKGRKYFHHNS--------D 138
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVKSKSDI--VSESLQPDAWKKIQLKEA 752
I K DSG Y C+ + + S T + + + +S P K + K+
Sbjct: 139 FYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFFPPGYQGKKKKKKG 198
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 27/196 (13%), Positives = 44/196 (22%), Gaps = 61/196 (31%)
Query: 70 FECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129
+C+ + +WF N ++ + I +DSG Y C+
Sbjct: 27 LKCQGAYSP-EDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQTQL 75
Query: 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189
VQ +
Sbjct: 76 STLSDPVQLEVH-----------------------------------------IGWLLLQ 94
Query: 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCL 249
KE H C + KV + N K ++ I +
Sbjct: 95 APRWVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKGRKYFHHNSD--------FYIPKAT 145
Query: 250 PEDSGVYTCRAVNALG 265
+DSG Y CR +
Sbjct: 146 LKDSGSYFCRGLVGSK 161
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
K + + + I V +C+ G P +V W P S T + +
Sbjct: 100 KVKASYMRIDTRILEVPGTGEVQLTCQA--RGYPLAEVSWQNVSVPANTSHIRTPEGLY- 156
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V L ++ + + C NA + +T+A +
Sbjct: 157 QVTSVL-RLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 11/103 (10%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG------SRFHVQHDF---GYVTLDIT 699
G S +C E ++ R + + G I
Sbjct: 15 DVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 700 KCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPD 742
DSG Y C I A ++KVK+ + +
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEV 115
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGS---RFHVQH 689
P+ + + EG +A CR W NG + G+ R V
Sbjct: 340 YAPVIVEP-PADLNVTEGMAAELKCRA---STSLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
D G TL+ T D+G+Y C N G +S +L V
Sbjct: 396 D-G--TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PV +P +++ V EG A CR V W + +
Sbjct: 340 YAPVIVEPPADLN-VTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRI---A 392
Query: 562 VAMD----LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V D ++V +D G+Y C +N++G +A++ +
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVP 357
+GRY APV +P D++V E AA + R S V+W+ NG
Sbjct: 325 KGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTV 381
Query: 358 I---QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ R++ + D G LNF +D+G YTC N +G S+TL V
Sbjct: 382 MTHGAYKVRIAVLSD-GT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 172 RGEYI-----EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVP 225
+G YI T AP+ + + EG A +CR S + V W N
Sbjct: 325 KGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTV 381
Query: 226 IKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ G+ L+ +D+G+YTC N++G S L V
Sbjct: 382 MTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVAL 110
+ +P + N+ E A +C+ + S V W NG +T G I L
Sbjct: 343 VIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ + +D+G YTC N VG ATL
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV-NGVELKMGS---RFHVQH 689
P I EG+ A CR P +W + NG L S R V +
Sbjct: 351 SAPFIMDA-PRDLNISEGRMAELKCRT----PPMSSVKWLLPNGTVLSHASRHPRISVLN 405
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
D G TL+ + + +D+GVY C N AG + +S L V +
Sbjct: 406 D-G--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
AP + ++ I EG+ A +CR P V+W N G+ + + +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPP----MSSVKWLLPN-----GTVLSHASRHPRI 401
Query: 242 A------LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ L+ L D+GVYTC N G + S L V +
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWF----RNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
+ EG+ A CR P V+W RI+ +D G ++ SHV
Sbjct: 364 ISEGRMAELKCR----TPPMSSVKWLLPNGTVLSHASRHPRISVLND-GT--LNFSHVLL 416
Query: 572 EDEGIYICKATNALGEAVTTASMKIKT 598
D G+Y C TN G + +A + + T
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAYLNVST 443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVP 357
+GRY AP RD++++E + A + R V WL NG
Sbjct: 336 RGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCR----TPPMSSVKWLLPNGTV 391
Query: 358 IQ---ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412
+ R+S ++D G LNF + D+G YTC N G + S+ L V + +
Sbjct: 392 LSHASRHPRISVLND-GT--LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFR--PIHDFGYV 108
+ P+ + N+ E A +C+ P++ V+W NG ++ R + + G
Sbjct: 355 IMDAPRDL-NISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGT- 408
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L+ + D+G YTC N+ G + A L
Sbjct: 409 -LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 7e-09
Identities = 23/222 (10%), Positives = 52/222 (23%), Gaps = 47/222 (21%)
Query: 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
+ G + +C G + W ++ ++ + ++ V +E
Sbjct: 12 LAQIGDSVSLTCST--TGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNE 66
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634
Y+C AT + ++I
Sbjct: 67 HSYLCTATCESRKLEKGIQVEI-------------------------------------Y 89
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
+ + + G+ C V V + + +K
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 694 VTLDITKCVPA----DSGVYMCKAINRAGEAVSSTSLKVKSK 731
T + V +C+A E S +++ K
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 2e-07
Identities = 23/230 (10%), Positives = 53/230 (23%), Gaps = 52/230 (22%)
Query: 195 IKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDS 253
+ G C + + W +G E L + +
Sbjct: 13 AQIGDSVSLTCS---TTGCESPFFSWRTQIDSPLNGKVTNEGTT---STLTMNPVSFGNE 66
Query: 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313
Y C A + + +
Sbjct: 67 HSYLCTATCESRKLEKGIQV-------------------------------------EIY 89
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
P + + + + + V +L++ L+ +++ +
Sbjct: 90 SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 373 VALNFKYTY---PEDSG-TYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418
+ + T+ ED G CRA + E ++ +A +L
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDE---MDSVPTVRQAVKELQVY 196
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 20/188 (10%), Positives = 45/188 (23%), Gaps = 46/188 (24%)
Query: 84 VEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
W G + ++ L + + +Y C A E +
Sbjct: 33 FSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV--- 86
Query: 144 GSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203
P + ++ G+
Sbjct: 87 -----------------------------------EIYSFPKDPEIHLSGPLEAGKPITV 111
Query: 204 ECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFGFVALD---IMQCLPEDSG-VYTC 258
+C + V + ++++ + +KS + + + ED G V C
Sbjct: 112 KCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 171
Query: 259 RAVNALGQ 266
RA + +
Sbjct: 172 RAKLHIDE 179
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 516 VEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH----VR 570
+E GK C + V L+++ + + ++ + L V
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Query: 571 AEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHP 609
+ + +C+A + E + +++ K +L+
Sbjct: 163 EDIGKVLVCRAKLHIDEMDSVPTVRQAVK---ELQVYIS 198
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 6e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
G S C G + F W ++ + + V ++ TL + + Y
Sbjct: 15 IGDSVSLTCSTT--GCESPFFSWR-TQIDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSY 69
Query: 710 MCKAINRAGEAVSSTSLKVKSKSDIVSESLQP 741
+C A + + +++ S L
Sbjct: 70 LCTATCESRKLEKGIQVEIYSFPKDPEIHLSG 101
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-08
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF-- 240
L++ ++ +G+ A F L ++ WF N +KS +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRY 63
Query: 241 --------VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
L + +DSG + S L +
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAALTI 103
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 7e-08
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM----------GSRFHVQHDFGYVTL 696
++ +G+ A + + + T WF+NG ELK R+ ++ L
Sbjct: 19 QVYDGEDAVFSLDLSTIIQGT----WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRL 74
Query: 697 DITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
+ DSG + S +L ++ S S
Sbjct: 75 ILHAVKHQDSGALVG---FSCPGVQDSAALTIQESSGPSS 111
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----------RITT 555
L+++ V +G++A FS L ++ WF N + L+ + R
Sbjct: 11 LVAGLEDVQ-VYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ + L V+ +D G + + +A++ I+ +G
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALV---GFSCPGVQDSAALTIQESSG 108
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 8e-07
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS----------NRVSTM 367
+ D+ V + + A F L + ++ TW NG ++++ R
Sbjct: 11 LVAGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L +DSG S+ L ++
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAALTIQ 104
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 14/84 (16%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----------IGHRFRP 101
+ + + A F L + ++ WF NG + R+R
Sbjct: 10 RLVAGLEDVQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 102 IHDFGYVALDIIDTIPEDSGTYTC 125
L + +DSG
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVG 89
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-08
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--------NEKPLEDSSRITT 555
T + I VEEG+ C ++W NE P+ +S+
Sbjct: 2 GSLTNHTETI-TVEEGQTLTLKCVT--SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58
Query: 556 KH-DFGYVAMDLSHVRAEDEGIYICKA-TNALGEAVTT 591
H +++ + +V +DEG+Y C ++++
Sbjct: 59 LHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVK 96
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--------NGVPIQASNRVSTM 367
T I V E Q + + WL N P+ +++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVT--SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 368 H-DFGYVALNFKYTYPEDSGTYTCRAVNE 395
H +++ +D G Y C ++
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCLHYSD 88
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEW--------FHNNVPIKSGSRFT-E 234
T + ++EGQ +C +++ ++W F N P+ S++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQ 282
++ +++ + +D GVY C + + ++V + +
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMKGE 106
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-05
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 648 IMEGQSAHYDCRVVPVGDPTMRFEW--------FVNGVELKMGSRFHVQH-DFGYVTLDI 698
+ EGQ+ C + + +W F+N + S++ + H +++ +
Sbjct: 13 VEEGQTLTLKCVTSLRKNSS--LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
D GVY C + + V
Sbjct: 71 PNVTLQDEGVYKCL-HYSDSVSTKEVKVIV 99
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEW-FRNEKPLEDSSRITTKHDFGYVAMD 565
++ ++ G C KV NE+ L S + G +
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLF 304
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKI 596
V+ ED G+Y C A + +K+
Sbjct: 305 FKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 28/128 (21%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 603 QLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP 662
L H + L I L+ +E E G + C
Sbjct: 228 DLYCMHSKKLHNIFSLDFFNCSEYKESAW---------------EAHLGDTLTIRCDTKQ 272
Query: 663 VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722
G + N L GS V G L K D GVY C A+
Sbjct: 273 QGMTKVWVSP-SNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 723 STSLKVKS 730
S LKV +
Sbjct: 330 SVELKVYN 337
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS---RFTETNNFGFVALDIMQC 248
E G C KV +N + S + N L +
Sbjct: 255 AWEAHLGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG----DLFFKKV 308
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
ED GVYTC A+ S L V++
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYN 337
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 321 PMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA-SNRVSTMHDFGYVALNFKY 379
KV + + + + S G L FK
Sbjct: 252 KESAWEAHLGDTLTIRCDT--KQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKK 307
Query: 380 TYPEDSGTYTCRAVNELGEAVTSSTLFV 407
ED G YTC A+ E S L V
Sbjct: 308 VQVEDGGVYTCYAMGETFNETLSVELKV 335
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-07
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 22/122 (18%)
Query: 621 PASPMPQEPERQY-EKPIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFEWF--- 673
S +EP + +KP + + G+ A +V PT++ WF
Sbjct: 3 SGSSGAEEPTGVFLKKP-------DSVSVETGKDAVVVAKVNGKELPDKPTIK--WFKGK 53
Query: 674 VNGVELKMGSRFHVQHDF------GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727
+ K G+RF + V L I K V D G Y + + ++
Sbjct: 54 WLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Query: 728 VK 729
V+
Sbjct: 114 VE 115
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-07
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWF---HNNVPIKSGSRF 232
+F + ++ G+ A ++ + ++WF + KSG+RF
Sbjct: 6 SGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARF 65
Query: 233 T------ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279
+ +N V L I + + D G Y N+ V + +
Sbjct: 66 SFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-05
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK---VEWFR---NEKPLEDSSRITTKH 557
VF K ++ VE GK+A ++ G ++WF+ E + +R + K
Sbjct: 13 GVFLKKPDSVS-VETGKDAVVVAKV--NGKELPDKPTIKWFKGKWLELGSKSGARFSFKE 69
Query: 558 DFGYVA------MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + + V D G Y + ++ ++
Sbjct: 70 SHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-05
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK---VTWLR---------NGVPIQASNR 363
VF + + V + A A++ G + W + +G
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKV--NGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
++ + V L+ D G Y + + VE
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 3e-04
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 17/102 (16%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNL----KVEWFK---------NGRPVTIGHRF 99
+ KP S+ A K V L ++WFK +G +
Sbjct: 16 LKKPDSVSV-ETGKDAVVVAK---VNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH 71
Query: 100 RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ V L I + D G Y +
Sbjct: 72 NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 31/226 (13%), Positives = 52/226 (23%), Gaps = 62/226 (27%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-------DSSRITTKHDFGYVAMDLS--- 567
G++ P G+ + W NE L S I + ++ +
Sbjct: 12 LGESVTLPLE-FPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 568 -----HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
+++ ED G Y + + + K+
Sbjct: 71 SLQLSNLKMEDTGSYRAQIST--------------------------KTSAKLSSYTLRI 104
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
+ + +F H C V D + F W G L
Sbjct: 105 LRQLRNIQVTNHSQLFQN---------MTCELHLTCSVED-ADDNVSFRWEALGNTLSSQ 154
Query: 683 SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
V D + Y C A N S S +
Sbjct: 155 PNLTVSWD---PRIS-------SEQDYTCIAENAVSNLSFSVSAQK 190
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 30/227 (13%), Positives = 54/227 (23%), Gaps = 68/227 (29%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPI------------------KSGSRFTETNNF 238
G+ P + + W N + K G R T ++
Sbjct: 12 LGESVTLPLE-FPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 239 GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLE 298
+L + ED+G Y + ++S L + + T H +
Sbjct: 71 ---SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN----- 122
Query: 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI 358
T + T S + D + W G +
Sbjct: 123 -----MTCELHLTCS--------------------------VEDADDNVSFRWEALGNTL 151
Query: 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTL 405
+ ++ D YTC A N + S +
Sbjct: 152 SSQPNLTVSWD----------PRISSEQDYTCIAENAVSNLSFSVSA 188
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 11/73 (15%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
H +C + D + W L +T D R E
Sbjct: 121 QNMTCELHLTCS-VEDADDNVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQ 169
Query: 576 IYICKATNALGEA 588
Y C A NA+
Sbjct: 170 DYTCIAENAVSNL 182
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 5e-06
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 143 RGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY------IEETTTQAPIFTTSLKNCEIK 196
R I T N + E + +G + ++N E+
Sbjct: 122 RAELAISTFWPNFYQV----IFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVN 177
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA-LDIMQCLPEDSGV 255
GQ A F+C I + ++ +V T++ F+A +++ D+G
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGK 237
Query: 256 YTCRAVNALGQAVTSGNLLV 275
Y C G +++ LV
Sbjct: 238 YRCMIRTEGGVGISNYAELV 257
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT---LDITKCVP 703
E+ GQ A + C + G ++ G++++ ++ ++
Sbjct: 175 EVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
D+G Y C G +S+ + V
Sbjct: 233 RDAGKYRCMIRTEGGVGISNYAELV 257
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWL---RNGVPIQAS 361
++ ++ P F + +++ V Q A F+ +G + +
Sbjct: 155 VKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCS--AIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
T + N T D+G Y C E G +++ V
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-06
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS-------------RITTKHDFGYV 562
E+G + C L +V W + ++ L + R+ G
Sbjct: 15 AEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG-- 72
Query: 563 AMDLSHVRAEDEGIYICK-ATNALGEAVTTASMKIKTK 599
+ L + D G Y C T G +++
Sbjct: 73 -LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 6e-06
Identities = 28/237 (11%), Positives = 57/237 (24%), Gaps = 64/237 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDP---TLKVEWFRNEKPL---------------EDSSRITTKH 557
VE G N C+ L V W +K + R
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 558 DF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
D G A+ ++ V+ +D G+Y C ++ K + +++
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCM--------ISYGGADYK-RITVKV---------- 113
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+ + C+ G P W
Sbjct: 114 -----NAPYNKINQRILVVDP--------------VTSEHELTCQA--EGYPKAEVIWTS 152
Query: 675 NGVELKMGSRFHVQHDFGYVTLDIT---KCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ ++ G ++T + + ++ C E + L +
Sbjct: 153 SDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 6e-05
Identities = 27/234 (11%), Positives = 56/234 (23%), Gaps = 64/234 (27%)
Query: 198 GQRAHFECRLIP---VSDNTMKVEWFHNNVPI---KSG---------------SRFTETN 236
G EC+ + + V W + I G +
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
+ G AL I +D+GVY C ++ G + V++ + +
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKINQRILVVD------ 128
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356
V +A P K +V W +
Sbjct: 129 -----------------------------PVTSEHELTCQAEGYP----KAEVIWTSSDH 155
Query: 357 PI--QASNRVSTMHDFGYVALNFKYTY-PEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + ++ + + + + C E ++ L +
Sbjct: 156 QVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 33/253 (13%), Positives = 66/253 (26%), Gaps = 69/253 (27%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSN---LKVEWFKNGRPVTI------------- 95
TVT PK + + + ECK + L V W + +
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 96 --GHRFRPIHDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILT 150
R R + D G AL I D +D+G Y C ++ G + T++ +
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKIN 121
Query: 151 STQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPV 210
C+
Sbjct: 122 QRILVVD--------------------------------------PVTSEHELTCQ---- 139
Query: 211 SDN--TMKVEWF---HNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265
++ +V W H + K+ + ++ F ++ + ++ C
Sbjct: 140 AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP 199
Query: 266 QAVTSGNLLVHSK 278
+ + L++
Sbjct: 200 EENHTAELVIPEL 212
|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 2e-05
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP 250
+ + R + C P+ W H +S ++ N L I
Sbjct: 508 QKVSLAPNSRYYLSC---PMESRHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTA 561
Query: 251 EDSGVYTCRAV-NALGQAVTSGNLLV 275
+ G Y C A + + LL
Sbjct: 562 QQYGHYFCEAQEGSYFREAQHWQLLP 587
|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 2e-05
Identities = 17/134 (12%), Positives = 27/134 (20%), Gaps = 9/134 (6%)
Query: 15 PYLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKL 74
PY + + K+ P +L + C +
Sbjct: 465 PYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPM 524
Query: 75 EPVTDSNL-KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133
E S W + L I + + G Y C A +
Sbjct: 525 E----SRHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFCEAQEG-SY 576
Query: 134 AEVQATLQCRGSAG 147
Q G
Sbjct: 577 FREAQHWQLLPEDG 590
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 65/429 (15%), Positives = 116/429 (27%), Gaps = 147/429 (34%)
Query: 4 VWSPPNPQDSSPYLSSKKETSYH---WQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIE 60
+ SP + P + ++ + + V F Y V++ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---------------FAKYNVSRLQPYL 138
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDS 120
LR+ L L+ V +D
Sbjct: 139 KLRQ--------ALL-----ELRPA--------------------KNVLID--------- 156
Query: 121 GTYTCRAVNLVGF------AEV--QATLQCRGSAGI--LTSTQ---NETGLEQIQYLE-- 165
G ++G +V +QC+ I L ET LE +Q L
Sbjct: 157 G--------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 166 -DKSKYQRGEYIEETTTQAPIFTTSLKN-CEIKEGQRA--------------HFE--CRL 207
D + R ++ + L+ + K + F C++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 208 I------PVSDNTMKVEWFHNNVPIKSGSR-FTETNNFGFVA--LDI-MQCLPEDSGVYT 257
+ V+D H + + S T + LD Q LP
Sbjct: 269 LLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------ 320
Query: 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR-TSIIEDTV-SQA 315
+ +T N S I + G L+ + + T+IIE ++
Sbjct: 321 --------EVLT-TNPRRLS--IIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 316 PVFTQPM-RDIHVAENQAAHF-EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
P + M + V F + IP L + W + + V+ +H + V
Sbjct: 368 PAEYRKMFDRLSV-------FPPSAHIPT--ILLSLIWF-DVIKSDVMVVVNKLHKYSLV 417
Query: 374 ALNFK-YTY 381
K T
Sbjct: 418 EKQPKESTI 426
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 504 PVFTKPL-QNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
PL QN+ V EG A +CR+ + + ++W + D
Sbjct: 6 SQGQFPLTQNV-TVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIE 62
Query: 563 AMDLSH---------VRAEDEGIYIC 579
+ S V DEG Y C
Sbjct: 63 LVRASWHELSISVSDVSLSDEGQYTC 88
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW--------FVNGVELKMGSRFHV 687
LT ++EG +A CRV + +++ W + + + +R +
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNRIEL 63
Query: 688 QH-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ +++ ++ +D G Y C ++ S L V
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTC-SLFTMPVKTSKAYLTV 104
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 7e-05
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 314 QAPVFTQP-MRDIHVAENQAAHFEARLIPVGDSKLKVTWLR--------NGVPIQASNRV 364
+ P +++ V E A R+ ++ + W + NR+
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRI 61
Query: 365 STMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ + ++++ D G YTC + + + + L V
Sbjct: 62 ELVRASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--------NNVPIKSGSRFTETNN-FGFV 241
+N + EG A CR+ + + ++W + ++ +R + +
Sbjct: 14 QNVTVVEGGTAILTCRVDQNDNTS--LQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL 71
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
++ + D G YTC + + + L V
Sbjct: 72 SISVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTV 104
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 38/220 (17%)
Query: 515 AVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAED 573
GKN C++ L V R EK L R + V + R
Sbjct: 97 WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHH 153
Query: 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY 633
+ C+ L + T A QL+T +
Sbjct: 154 GANFSCRTELDLRPQ--GLELFENTSAPYQLQT--------------------------F 185
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRV---VPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
P L + C + PV + + L +
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPV--SEAQVHLALGDQRLNPTVTYGNDSF 243
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
++ +T + C I + ++ + S
Sbjct: 244 SAKASVSVTA-EDEGTQRLTCAVILGNQSQETLQTVTIYS 282
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 5e-05
Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 65/239 (27%)
Query: 516 VEEGKNAHFSCRLIP-----VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA------- 563
V+EG C P L V WFR+ + + + T + V
Sbjct: 12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRF 71
Query: 564 ------------MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEG 611
+ + R ED G Y + + K+
Sbjct: 72 RLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLN-------------- 117
Query: 612 LKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPV--GDPTMR 669
L+ +E+P + E G+ C + P +
Sbjct: 118 LEVTALIEKPDIHFLEPLE-------------------SGRPTRLSCSLPGSCEAGPPLT 158
Query: 670 FEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
F W N + + L +T C+ + + + ++++
Sbjct: 159 FSWTGNALSP-LDPETTRSS-----ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 34/244 (13%), Positives = 56/244 (22%), Gaps = 69/244 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP----------------LEDSSRITTKHDF 559
V GK+ C D + +EWF ++ +
Sbjct: 12 VMRGKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPP 70
Query: 560 GYVAMD----LSHVRAEDEGIYICKA-TNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
+ L+ + DE Y+C A G A TA + +
Sbjct: 71 YQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV------------------ 112
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV 674
+P E + S + + C G+P + W+
Sbjct: 113 ---FAKP------------EATEVSPNKGTLSVMEDSAQEIATC-NSRNGNPAPKITWYR 156
Query: 675 NGVELK----------MGSRFHVQHDFGYVTLDITKCVPA---DSGVYMCKAINRAGEAV 721
NG L+ M SR + + C A E
Sbjct: 157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGR 216
Query: 722 SSTS 725
Sbjct: 217 HGRL 220
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 28/251 (11%), Positives = 62/251 (24%), Gaps = 70/251 (27%)
Query: 516 VEEGKNAHFSCRLIPVGDPT-LKVEWFRN-----------------EKPLEDSSRITTKH 557
G++A C L P ++++W + + R +
Sbjct: 16 AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR 75
Query: 558 DF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKK 614
D G A+ + +V A D G Y+C +
Sbjct: 76 DGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKAL----------------------- 112
Query: 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWF- 673
+E + + + + + H +CR P + +W
Sbjct: 113 ---VELKVAALGSDLHVDVKGY-------------KDGGIHLECRSTG-WYPQPQIQWSN 155
Query: 674 VNGVELKMGSRFHVQHDFGYVTLDITKCVP-ADSGVYMCKAINRAGEAVSSTSLKVKSKS 732
G + V G + + + + C + + S+
Sbjct: 156 NKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASI------ 209
Query: 733 DIVSESLQPDA 743
+++ A
Sbjct: 210 -SIADPFFRSA 219
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 36/234 (15%), Positives = 64/234 (27%), Gaps = 65/234 (27%)
Query: 198 GQRAHFECRLIPVSD-NTMKVEWFHNNVPI-----KSG---------------SRFTETN 236
G+ A C L P TM+++W +++ G S +
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQ 296
G AL I DSG Y C Q + ++L L+
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCY---------------------FQDGDFYEKALVELKV 117
Query: 297 LEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS-KLKVTWLRN- 354
+ + D+ ++ H E R G + ++ W N
Sbjct: 118 A------------------ALGSDLHVDVKGYKDGGIHLECR--STGWYPQPQIQWSNNK 157
Query: 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSSTLFV 407
G I G A+ S +C + L ++++ +
Sbjct: 158 GENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 30/223 (13%), Positives = 55/223 (24%), Gaps = 68/223 (30%)
Query: 516 VEEGKNAHFSCRLIPV----------GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
G N + P+ +E+F N K S + D
Sbjct: 11 AITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGA 70
Query: 566 L--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPAS 623
L +V ED G Y + + T KI ++ + + +P
Sbjct: 71 LRIYNVSKEDRGDYYMRMLHE-----TEDQWKIT--------------MEVYEMVSKP-- 109
Query: 624 PMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS 683
E +A C V+ D + + L+
Sbjct: 110 ----------------------MIYWECSNATLTCEVLEGTDVE--LKLYQGKEHLRSLR 145
Query: 684 RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726
+ ++ + CKA+NR + +
Sbjct: 146 Q-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 32/199 (16%), Positives = 55/199 (27%), Gaps = 67/199 (33%)
Query: 78 TDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV--ALDIIDTIPEDSGTYTCRAVNLVGFAE 135
T + +E+F NG+ F+ D AL I + ED G Y R ++
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLH------ 90
Query: 136 VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN--- 192
+ ++ E SK P+ N
Sbjct: 91 ----------------ETEDQWKITMEVYEMVSK--------------PMIYWECSNATL 120
Query: 193 -CEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPE 251
CE+ EG V ++ + ++S + T +
Sbjct: 121 TCEVLEGT---------DVE-----LKLYQGKEHLRSLRQKTMSYQ-----------WTN 155
Query: 252 DSGVYTCRAVNALGQAVTS 270
+ C+AVN + Q
Sbjct: 156 LRAPFKCKAVNRVSQESEM 174
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 2e-04
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
+ +P+ +P + + AV G + +CRL D V+W + L + D G
Sbjct: 4 QVKPLQVEPPEPVVAVALGASRQLTCRLA-CADRGASVQWRGLDTSLG-----AVQSDTG 57
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + + G +C + T + +
Sbjct: 58 RSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 30/217 (13%), Positives = 55/217 (25%), Gaps = 49/217 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKP--LEDSSRITTKHDF---------GYV 562
E + A SC + ++ W + +K S + ++ +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622
++ + +R DEG Y C + + K + A + L + I + E P
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKD-----AFKREHLAEVTLSVKADFPTPSISDFEIP- 119
Query: 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG 682
C G P W NG EL
Sbjct: 120 ---------------------------TSNIRRIICSTSG-GFPEPHLSWLENGEELNAI 151
Query: 683 SRFHVQH-DFGYVTLDITKCVPADS-GVYMCKAINRA 717
+ Q + + + +MC
Sbjct: 152 NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGH 188
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 21/86 (24%)
Query: 516 VEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPL-----------------EDSSRITTKH 557
G A CR+ P + T ++V W+R+ E R
Sbjct: 18 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK 77
Query: 558 D---FGYVAMDLSHVRAEDEGIYICK 580
+ G VA+ + +VR DEG Y C
Sbjct: 78 ESIGEGKVALRIQNVRFSDEGGYTCF 103
|
| >3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 19/84 (22%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---------EDSSRITTKHDFGY----- 561
G+ C + + W + P D +RI ++ Y
Sbjct: 8 GFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK 67
Query: 562 -----VAMDLSHVRAEDEGIYICK 580
V++ +S+ D G+Y C+
Sbjct: 68 VQFGEVSLTISNTNRGDSGVYCCR 91
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG 532
HP K+ K + VF P + D + +C + V
Sbjct: 199 AHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVV--VD 256
Query: 533 ----DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS-----HVRAEDEGIYICKATN 583
DP ++ WF + + + + F +S H + + C+ +
Sbjct: 257 ISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNS 316
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 5e-04
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 15/125 (12%)
Query: 616 QELEQPASPMPQEP---ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW 672
Q ++ P + +Q T ++ G + C+V D +W
Sbjct: 15 QHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS--SLQW 72
Query: 673 --------FVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723
+ +R + +++ I+ AD G Y C I +
Sbjct: 73 SNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTAK 131
Query: 724 TSLKV 728
+ + V
Sbjct: 132 SLVTV 136
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 9e-04
Identities = 20/192 (10%), Positives = 44/192 (22%), Gaps = 58/192 (30%)
Query: 79 DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQA 138
+ E + + R D +L I + D Y + N+ +
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 90
Query: 139 TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEG 198
+ S P+ N
Sbjct: 91 YVLEMVS-------------------------------------KPMIYWECSNA----- 108
Query: 199 QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTC 258
C ++ +D ++ + ++S + T + + + C
Sbjct: 109 ---TLTCEVLEGTDVE--LKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKC 152
Query: 259 RAVNALGQAVTS 270
+AVN + Q
Sbjct: 153 KAVNRVSQESEM 164
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 808 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 100.0 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 100.0 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 100.0 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 100.0 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 100.0 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 100.0 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 100.0 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 100.0 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 100.0 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 100.0 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 100.0 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 100.0 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 100.0 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 100.0 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 100.0 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 100.0 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 100.0 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.98 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.98 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.98 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.98 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.98 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.98 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.98 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.98 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.98 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.97 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.97 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.97 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.97 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.97 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.97 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.97 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.97 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.97 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.97 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.97 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.97 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.97 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.97 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.97 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.97 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.96 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.96 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.96 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.95 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.95 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.95 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.95 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.95 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.95 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.94 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.94 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.94 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.94 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.94 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.94 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.94 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.94 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.94 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.93 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.93 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.93 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.93 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.93 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.93 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.93 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.93 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.92 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.92 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.92 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.92 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.92 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.92 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.92 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.91 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.91 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.91 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.91 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.91 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.91 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.91 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.91 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.9 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.9 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.9 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.9 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.9 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.89 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.89 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.89 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.89 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.89 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.89 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.89 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.89 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.89 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.89 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.89 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.88 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.88 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.88 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.88 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.88 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.88 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.88 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.88 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.88 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.88 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.88 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.88 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.87 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.87 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.87 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.87 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.87 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.87 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.87 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.87 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.87 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.87 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.87 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.86 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.86 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.86 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.86 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.86 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.86 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.85 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.85 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.85 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.85 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.85 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.85 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.85 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.85 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.85 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.85 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.85 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.85 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.84 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.84 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.84 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.84 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.84 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.84 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.84 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.84 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.84 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.84 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.84 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.84 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.84 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.84 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.84 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.84 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.84 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.84 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.83 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.83 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.83 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.83 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.83 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.83 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.83 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.83 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.83 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.83 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.83 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.83 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.83 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.83 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.82 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.82 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.82 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.82 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.82 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.82 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.82 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.82 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.82 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.82 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.82 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.82 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.82 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.81 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.81 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.81 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.81 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.81 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.81 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.81 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.81 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.81 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.81 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.81 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.81 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.81 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.81 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.81 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.81 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.81 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.81 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.81 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.8 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.8 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.8 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.8 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.8 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.8 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.8 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.8 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.8 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.8 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.8 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.8 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.8 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.8 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.8 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.8 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.8 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.8 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.8 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.8 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.79 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.79 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.79 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.79 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.79 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.79 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.79 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.79 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.79 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.79 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.79 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.79 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.79 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.79 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.79 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.79 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.79 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.78 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.78 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.78 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.78 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.78 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.78 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.78 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.77 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.77 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.77 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.77 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.77 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.77 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.77 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.77 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.77 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.76 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.76 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.76 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.76 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.76 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.76 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.76 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.76 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.76 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.76 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.76 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.76 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.76 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.75 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.75 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.75 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.75 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.75 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.75 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.75 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.75 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.75 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.75 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.74 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.74 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.74 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.74 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.74 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.74 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.74 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.74 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.74 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.73 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.73 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.73 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.73 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.73 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.73 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.73 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.72 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.72 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.72 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.72 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.72 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.72 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.72 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.71 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.71 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.71 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.71 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.7 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.7 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.7 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.7 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.7 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.69 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.69 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.69 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.69 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.69 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.68 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.68 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.68 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.67 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.67 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.67 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.67 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.67 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.66 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.66 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.66 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.65 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.65 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.65 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.65 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.65 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.64 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.64 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.64 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.64 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.64 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.63 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.63 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.63 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.63 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.63 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.62 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.62 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.62 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.61 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.61 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.61 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.61 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.61 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.61 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.61 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.61 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.61 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.6 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.6 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.6 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.6 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.6 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.59 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.59 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.58 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.58 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.58 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.58 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.58 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.58 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.57 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.57 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.57 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.57 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.57 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.57 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.57 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.56 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.55 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.55 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.54 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.54 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.54 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.54 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.54 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.54 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.54 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.54 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.54 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.53 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.53 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.53 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.53 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.53 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.53 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.52 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.52 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.52 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.52 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.52 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.52 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.51 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.51 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.51 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.51 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.5 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.5 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.5 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.5 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.49 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.49 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.49 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.49 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.49 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.49 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.49 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.49 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.49 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.49 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.49 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.48 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.48 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.47 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.47 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.47 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.47 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.46 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.46 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.46 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.45 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.45 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.45 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.45 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.45 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.45 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.45 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.45 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.44 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.44 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.44 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.44 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.44 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.44 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.43 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.43 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.43 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.42 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.42 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.42 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.42 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.41 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=621.62 Aligned_cols=500 Identities=23% Similarity=0.422 Sum_probs=426.6
Q ss_pred ccccccccccceeeeccCCCchhhhhhhcc---CCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEE
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAKKK---KNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRP 92 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~ 92 (808)
+..++.+|.|.|+|.|.|..+......... ....+.+...+.++ .+.+|+.+.|.|.+. +.|.+.|.|||||..
T Consensus 65 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~-~~~~G~~v~l~C~~~--g~p~~~v~W~k~g~~ 141 (570)
T 3b43_A 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDV-HETLGFPVAFECRIN--GSEPLQVSWYKDGEL 141 (570)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCE-EEETTSCEEEEEEEE--SSSSCEEEEEETTEE
T ss_pred EccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCe-EecCCCeEEEEEEEc--cCCCCEEEEEECCEE
Confidence 445678899999999999876654433322 12345556666676 788999999999999 578889999999999
Q ss_pred eeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeecccccccc
Q psy2145 93 VTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172 (808)
Q Consensus 93 l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (808)
|..+.++.........+|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus 142 l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~--------------------------- 194 (570)
T 3b43_A 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH--------------------------- 194 (570)
T ss_dssp CCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---------------------------
T ss_pred CcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC---------------------------
Confidence 99888877666666779999999999999999999999999888888888532
Q ss_pred ccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCC
Q psy2145 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPED 252 (808)
Q Consensus 173 ~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D 252 (808)
..||.|...+....+.+|++++|.|.+ .+.|.+.|+|+|+|..+..+.++.+....+..+|.|.+++.+|
T Consensus 195 --------~~pp~~~~~p~~~~v~~G~~~~l~C~~--~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D 264 (570)
T 3b43_A 195 --------EVPPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGD 264 (570)
T ss_dssp --------CCCCEEEECCCCBCCBSBSCEEEEEEE--ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGG
T ss_pred --------CCCCccccCCceeEecCCCeEEEEEEE--EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCccc
Confidence 457888888888899999999999999 5788899999999999988888777665566689999999999
Q ss_pred cEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC-ceEeecCC
Q psy2145 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR-DIHVAENQ 331 (808)
Q Consensus 253 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~-~~~v~~G~ 331 (808)
+|.|+|.|.|..|....++.|.|.. +|.|...+. ...+.+|+
T Consensus 265 ~G~Y~C~a~N~~g~~~~~~~l~V~~-------------------------------------~p~~~~~~~~~~~v~~g~ 307 (570)
T 3b43_A 265 AGQYTCYASNVAGKDSCSAQLGVQE-------------------------------------PPRFIKKLEPSRIVKQDE 307 (570)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCBC-------------------------------------CCEEEECCCSBCCEESSC
T ss_pred CEEEEEEEECCCCcEEEEEEEEeec-------------------------------------CCcccccCCCccEEcCCC
Confidence 9999999999999998888888764 555554443 34578999
Q ss_pred eEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy2145 332 AAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 332 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 411 (808)
.+.|.|.+ .|.|.+.|.|+|+|.++..+.++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 308 ~~~l~C~~--~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~- 384 (570)
T 3b43_A 308 HTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP- 384 (570)
T ss_dssp EEEEEEEE--ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECC-
T ss_pred cEEEEEEE--eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCC-
Confidence 99999999 799999999999999999888887776666778999999999999999999999999999898888754
Q ss_pred cccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCC
Q psy2145 412 SLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHK 491 (808)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (808)
T Consensus 385 -------------------------------------------------------------------------------- 384 (570)
T 3b43_A 385 -------------------------------------------------------------------------------- 384 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 492 RPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 492 ~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
|.|...+.+. .+.+|+.+.|.|.+ .|.|.|.|+|+|||..|..+.++.+..++...+|.|.++..
T Consensus 385 ------------P~~~~~~~~~-~~~~G~~v~l~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~ 449 (570)
T 3b43_A 385 ------------PVFRKKPHPV-ETLKGADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 449 (570)
T ss_dssp ------------CEECSCCCCE-EECTTCCEEEEEEE--ESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCG
T ss_pred ------------CeeecCCCce-eecCCCEEEEEEEE--ecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh
Confidence 3333333333 46789999999999 79999999999999999988898888887777999999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.|..|...+++.|.|.. +|.|...+.. ..+.+|
T Consensus 450 ~D~G~Y~C~A~N~~G~~~~~~~l~v~~------------------------------------~P~~~~~~~~-~~~~~g 492 (570)
T 3b43_A 450 ADIGEYQCKASNDVGSDTCVGSITLKA------------------------------------PPRFVKKLSD-ISTVVG 492 (570)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEECC------------------------------------CCEEEECCCC-BCCBTT
T ss_pred hhCEEEEEEEEECCCeEEEEEEEEecc------------------------------------CCcccccCCC-ceecCC
Confidence 999999999999999999999998875 3666666554 578899
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEc-cCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVEL-KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+.+.|.|.+ .|.|.|.|.|+|||..+ ..+.++.+...++..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|.
T Consensus 493 ~~~~l~c~~--~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 493 EEVQLQATI--EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp CCEEEEEEE--ESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CeEEEEEEE--ecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence 999999999 79999999999998654 55678887777778899999999999999999999999999999999885
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-69 Score=615.88 Aligned_cols=479 Identities=24% Similarity=0.465 Sum_probs=415.5
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
+|.++..+.++ .+.+|+.++|.|.+. +.|.+.|.|||||..|..+.++.+...++..+|.|.+++.+|+|.|+|.|.
T Consensus 5 pP~f~~~~~~~-~v~~G~~v~L~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (570)
T 3b43_A 5 PPYFIEPLEHV-EAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE 81 (570)
T ss_dssp CCEEEECCCCE-EECTTSCEEEEEEEE--SSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCcceEECCce-EEcCCCEEEEEEEEc--cCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEE
Confidence 45566667777 899999999999998 578899999999999998888888777777899999999999999999999
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
|..|...+++.|.|... ..+|.|...+.+..+.+|+++.|.|.+
T Consensus 82 N~~g~~~~~~~l~v~~~-----------------------------------~~~p~~~~~~~~~~~~~G~~v~l~C~~- 125 (570)
T 3b43_A 82 NSVGAVASSAVLVIKER-----------------------------------KLPPSFARKLKDVHETLGFPVAFECRI- 125 (570)
T ss_dssp ETTEEEEEEEEEEECCC-----------------------------------CCCCEESSCCCCEEEETTSCEEEEEEE-
T ss_pred eCCceEEEEEEEEECCC-----------------------------------CCCCcccccCCCeEecCCCeEEEEEEE-
Confidence 99999888888877531 347888888888889999999999999
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCccccccccc
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~ 288 (808)
.+.|.+.|.|+|||..+..+.++......+..+|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus 126 -~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~---------- 194 (570)
T 3b43_A 126 -NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH---------- 194 (570)
T ss_dssp -ESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----------
T ss_pred -ccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC----------
Confidence 578889999999999998877766555555668999999999999999999999999988888888642
Q ss_pred chhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEe
Q psy2145 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH 368 (808)
Q Consensus 289 ~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~ 368 (808)
..+|.|...+....+.+|+.+.|.|.+ .|.|.+.|+|+|+|.++..+.++.+..
T Consensus 195 ------------------------~~pp~~~~~p~~~~v~~G~~~~l~C~~--~g~p~p~i~W~k~g~~i~~~~~~~~~~ 248 (570)
T 3b43_A 195 ------------------------EVPPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTL 248 (570)
T ss_dssp ------------------------CCCCEEEECCCCBCCBSBSCEEEEEEE--ESSSCCEEEEEETTEECCTTSSEEEEE
T ss_pred ------------------------CCCCccccCCceeEecCCCeEEEEEEE--EECCCCEEEEEECCEECcCCCcEEEEE
Confidence 246777777777788999999999999 789999999999999998888877766
Q ss_pred eCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccC
Q psy2145 369 DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQ 448 (808)
Q Consensus 369 ~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (808)
..+..+|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 249 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~--------------------------------------- 289 (570)
T 3b43_A 249 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE--------------------------------------- 289 (570)
T ss_dssp ETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC---------------------------------------
T ss_pred ECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec---------------------------------------
Confidence 66667899999999999999999999999988888887764
Q ss_pred CeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEE
Q psy2145 449 PSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRL 528 (808)
Q Consensus 449 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v 528 (808)
+|.|...+.....+.+|+.+.|.|.+
T Consensus 290 ------------------------------------------------------~p~~~~~~~~~~~v~~g~~~~l~C~~ 315 (570)
T 3b43_A 290 ------------------------------------------------------PPRFIKKLEPSRIVKQDEHTRYECKI 315 (570)
T ss_dssp ------------------------------------------------------CCEEEECCCSBCCEESSCEEEEEEEE
T ss_pred ------------------------------------------------------CCcccccCCCccEEcCCCcEEEEEEE
Confidence 34444444443357899999999999
Q ss_pred eeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccC
Q psy2145 529 IPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQH 608 (808)
Q Consensus 529 ~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~ 608 (808)
.|.|.+.|.|+|||..+..+.++.+....+...|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus 316 --~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P-------- 385 (570)
T 3b43_A 316 --GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------- 385 (570)
T ss_dssp --ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCC--------
T ss_pred --eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCC--------
Confidence 7999999999999999998888888777777789999999999999999999999999999999998643
Q ss_pred cccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE
Q psy2145 609 PEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688 (808)
Q Consensus 609 p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~ 688 (808)
.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||.+|..+.++.+.
T Consensus 386 ----------------------------~~~~~~~-~~~~~~G~~v~l~C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~ 434 (570)
T 3b43_A 386 ----------------------------VFRKKPH-PVETLKGADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKIM 434 (570)
T ss_dssp ----------------------------EECSCCC-CEEECTTCCEEEEEEE--ESSSSCCCEEEETTEECCSSSSEEEE
T ss_pred ----------------------------eeecCCC-ceeecCCCEEEEEEEE--ecCCCCEEEEEECCEECcCCCCEEEE
Confidence 3333322 2457789999999999 79999999999999999999999998
Q ss_pred EeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 689 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
.++...+|.|.++..+|+|.|+|.|.|.+|..+.++.|.|..+|.+...
T Consensus 435 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~ 483 (570)
T 3b43_A 435 SENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKK 483 (570)
T ss_dssp EETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEEC
T ss_pred EcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCccccc
Confidence 8888889999999999999999999999999999999999887766543
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=538.43 Aligned_cols=555 Identities=17% Similarity=0.254 Sum_probs=395.1
Q ss_pred CCCccccccccccceeeeccCCCchh-hhhhhc--cCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC
Q psy2145 13 SSPYLSSKKETSYHWQNVPVPEWSKE-QENAKK--KKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN 89 (808)
Q Consensus 13 ~~~~~~~~~ed~g~y~c~~~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~ 89 (808)
..-+..++.+|.|.|.|.+.+..... .....+ ......+.+..+... .+.+|+.+.|.|.+. + |.+.|.|+|+
T Consensus 72 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~v~~g~~v~l~C~~~--~-p~~~v~W~~~ 147 (642)
T 1e07_A 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSK-PVEDKDAVAFTCEPE--T-QDATYLWWVN 147 (642)
T ss_pred cEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCce-eEecCCcEEEEEECC--C-CCeeEEEEEC
Confidence 34466778899999999998763221 111111 111112333333444 678999999999998 4 7889999999
Q ss_pred CEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeecccc
Q psy2145 90 GRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKS 168 (808)
Q Consensus 90 g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (808)
|..+..+.++.+..+++ +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...
T Consensus 148 g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~----------------------- 202 (642)
T 1e07_A 148 NQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYG----------------------- 202 (642)
T ss_pred CeECCCCCceEEcCCCC--EEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeC-----------------------
Confidence 99999888887655443 79999999999999999999988764 34577777532
Q ss_pred ccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccC
Q psy2145 169 KYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC 248 (808)
Q Consensus 169 ~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~ 248 (808)
|+.+...+.+..+.+|+.++|.|.+ .+.|.+.|.|++||..+.... .|.|.++
T Consensus 203 --------------p~~~~~~~~~~~~~~G~~~~l~C~~--~g~p~~~i~W~~~g~~i~~~~-----------~L~i~~~ 255 (642)
T 1e07_A 203 --------------PDAPTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWFVNGTFQQSTQ-----------ELFIPNI 255 (642)
T ss_pred --------------CCCcEEecCCcccccCCEEEEEEEc--CCCCCcEEEEEECCeEcccCC-----------ceEEecc
Confidence 2233345566778999999999999 689999999999999884321 6999999
Q ss_pred CCCCcEEEEEEEEeCceeEEEE--EEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceE
Q psy2145 249 LPEDSGVYTCRAVNALGQAVTS--GNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIH 326 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~~g~~~~~--~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 326 (808)
+.+|+|.|+|.|.|..|....+ +.|.|...+ .+|.+.. .....
T Consensus 256 ~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~----------------------------------~~p~i~~-~~~~~ 300 (642)
T 1e07_A 256 TVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP----------------------------------PKPFITS-NNSNP 300 (642)
T ss_pred cccCCeEEEEEEEeCCCceEEeeeEEEEEEccC----------------------------------CCCEEEc-CCcee
Confidence 9999999999999988866544 455554321 1333332 23345
Q ss_pred eecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEE
Q psy2145 327 VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV-TSSTL 405 (808)
Q Consensus 327 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l 405 (808)
+..|+.+.|.|.+ .+.| +.++|+++|..+..+.++.+..+++ +|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus 301 ~~~g~~v~l~C~~--~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 375 (642)
T 1e07_A 301 VEDEDAVALTCEP--EIQN-TTYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL 375 (642)
T ss_pred EecCCcEEEEEEC--CCCC-ccEEEEECCccCCCcCCEEEeCCCC--EEEEeccCcccCeeEEEEEeCCCCCcceeeEEE
Confidence 5668889999998 6766 7999999999998888877765544 799999999999999999999999754 45888
Q ss_pred EEEecccccccccchHHHhhhhcccccccccccc--ceeeee--ccCCeeEEecCCCceeecCCceeEecccCCchhhhh
Q psy2145 406 FVESKASLQLDTQNEAALQKIQNLEDTSRFKRKE--EEEVEV--TQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKI 481 (808)
Q Consensus 406 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (808)
.|...|..+..... ...+.... ...+.+ ..+|.+.|..++..........+........|.+.|
T Consensus 376 ~V~~~p~~~~~~~~------------~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C 443 (642)
T 1e07_A 376 NVLYGPDDPTISPS------------YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTC 443 (642)
T ss_pred EEEcCCCCCeecCC------------ceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEE
Confidence 88876654321100 00111111 222222 345667666655322111111111222333445555
Q ss_pred cccccCCCCCCCCcCCC-C--ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee
Q psy2145 482 RKLEDTEPHKRPEVDDN-A--TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD 558 (808)
Q Consensus 482 ~~~~~~~~~~~~~~~~~-~--~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~ 558 (808)
...+..+.......... . ...+|.+.. ..+. .+.+|+.+.|.|.+ . .|.+.+.|+|+|..+..+.++.+..+
T Consensus 444 ~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~-~v~~g~~v~l~C~~--~-~~~~~i~W~~~g~~l~~~~~~~~~~~ 518 (642)
T 1e07_A 444 QANNSASGHSRTTVKTITVSAELPKPSISS-NNSK-PVEDKDAVAFTCEP--E-AQNTTYLWWVNGQSLPVSPRLQLSNG 518 (642)
T ss_pred EEEcCCCCCcccceEEEEEeccCCCceEec-CCce-eecCCCeEEEEEEC--C-CCCcEEEEEECCEeCCCCCcEEEcCC
Confidence 55444332222111111 1 113455443 3333 57899999999998 5 48899999999999998888877655
Q ss_pred CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCe
Q psy2145 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPI 637 (808)
Q Consensus 559 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~ 637 (808)
++ .|.|.++..+|+|.|+|.|.|..|...+ ++.|.|...|. .
T Consensus 519 ~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~-----------------------------------~ 561 (642)
T 1e07_A 519 NR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD-----------------------------------T 561 (642)
T ss_pred Cc--EEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC-----------------------------------c
Confidence 44 7999999999999999999999998654 68888886432 1
Q ss_pred EEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 638 ~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
+...+ ....+.+|+.++|.|.+ .|+|.|.|.|+|||.+|..+ ..|.|.++..+|+|.|+|.|.|.+
T Consensus 562 ~~~~~-~~~~v~~g~~~~l~C~~--~g~p~p~v~W~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~N~~ 627 (642)
T 1e07_A 562 PIISP-PDSSYLSGANLNLSCHS--ASNPSPQYSWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLA 627 (642)
T ss_pred ceecC-CceeEEcCCcEEEEEEe--ccCCCCeEEEEECCEECccC-----------ceEEECcccccCCeEEEEEEEecc
Confidence 22222 23568899999999999 79999999999999998743 279999999999999999999999
Q ss_pred cceEEEEEEEEEeC
Q psy2145 718 GEAVSSTSLKVKSK 731 (808)
Q Consensus 718 G~~~~s~~l~V~~~ 731 (808)
|.++.++.|.|...
T Consensus 628 G~~~~s~~l~V~v~ 641 (642)
T 1e07_A 628 TGRNNSIVKSITVS 641 (642)
T ss_pred cCcceeEEEEEEEc
Confidence 99999999998753
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=538.36 Aligned_cols=485 Identities=20% Similarity=0.312 Sum_probs=385.1
Q ss_pred ccccccccccceeeeccCCCchhhhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI 95 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~ 95 (808)
+..++.+|.|.|.|.+.|..+.......+.....+.+...|... .+.+|++++|.|.+.+ .|.+.|.|+|+|..+..
T Consensus 310 i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~-~v~~G~~v~l~C~~~g--~p~~~v~W~k~g~~~~~ 386 (816)
T 3dmk_A 310 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ-TVDFGRPAVFTCQYTG--NPIKTVSWMKDGKAIGH 386 (816)
T ss_dssp ECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEE-ECCTTSCEEEEEEEEE--ECCCEEEEEETTEECSC
T ss_pred ECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCce-EecCCCCEEEEEEEec--cCCCEEEEEECCEECCC
Confidence 55678899999999999987765443333333334455566666 8999999999999984 68889999999998864
Q ss_pred cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccc
Q psy2145 96 GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY 175 (808)
Q Consensus 96 ~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (808)
+. .+|.|.+++.+|+|.|+|.|.|..|....++.|.|...
T Consensus 387 ~~----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~------------------------------ 426 (816)
T 3dmk_A 387 SE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR------------------------------ 426 (816)
T ss_dssp CS----------SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS------------------------------
T ss_pred CC----------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc------------------------------
Confidence 32 26999999999999999999999998777777776421
Q ss_pred cccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-----cCceEEEEEccCCC
Q psy2145 176 IEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-----NFGFVALDIMQCLP 250 (808)
Q Consensus 176 ~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~~~L~I~~~~~ 250 (808)
..+|.|...+....+.+|+.++|.|.+ .+.|.+.|.|+++|..+..+.++.... ......|.|.++..
T Consensus 427 -----~~~p~i~~~~~~~~v~~G~~v~L~C~~--~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 499 (816)
T 3dmk_A 427 -----FDPPVIRQAFQEETMEPGPSVFLKCVA--GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHA 499 (816)
T ss_dssp -----SCCCEEEEECCCEEECSSSCEEEEEEE--ECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCT
T ss_pred -----cCCCceEecCcceEEcCCCCEEEEEEE--ecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccc
Confidence 457888888888899999999999999 588999999999999998877765421 22345799999999
Q ss_pred CCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecC
Q psy2145 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAEN 330 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G 330 (808)
+|+|.|+|.|.|..|....++.|.|.. +|.+ ..+....+.+|
T Consensus 500 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------------------------------------~p~~-~~~~~~~v~~G 541 (816)
T 3dmk_A 500 NDGGLYKCIAKSKVGVAEHSAKLNVYG-------------------------------------LPYI-RQMEKKAIVAG 541 (816)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEEECS-------------------------------------SCEE-CCCCCEEEETT
T ss_pred cCCEEEEEEEEECCCeEEEEEEEEEec-------------------------------------CCee-EccCCeEEecC
Confidence 999999999999999999999999865 3322 23345678899
Q ss_pred CeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCC-CCCCeEEEEEEEcCCcce-EEEEEEEEE
Q psy2145 331 QAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTY-PEDSGTYTCRAVNELGEA-VTSSTLFVE 408 (808)
Q Consensus 331 ~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~-~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 408 (808)
+.+.|.|.+ .+.|.+.|.|+++|..+..+.+.....+ + +|.|.++. .+|+|.|+|.|.|..|.. .....|.|.
T Consensus 542 ~~v~l~C~~--~g~p~~~i~W~k~~~~l~~~~~~~~~~~-~--~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~ 616 (816)
T 3dmk_A 542 ETLIVTCPV--AGYPIDSIVWERDNRALPINRKQKVFPN-G--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616 (816)
T ss_dssp CCEEEECCE--ECSSEEEEEEEETTEESCCSTTEEECTT-S--EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEE
T ss_pred CeEEEEEEe--cCCCCCEEEEEECCeEcccCCceEEecC-C--eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEe
Confidence 999999999 7899999999999999988777766544 3 69999998 689999999999999864 334666665
Q ss_pred ecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCC
Q psy2145 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTE 488 (808)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (808)
.+|.+.
T Consensus 617 ~~p~~~-------------------------------------------------------------------------- 622 (816)
T 3dmk_A 617 VLPRII-------------------------------------------------------------------------- 622 (816)
T ss_dssp CCCCCB--------------------------------------------------------------------------
T ss_pred cCCccc--------------------------------------------------------------------------
Confidence 443221
Q ss_pred CCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEECCEecCCCCCeEEEee-CcEEEEEE
Q psy2145 489 PHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLEDSSRITTKHD-FGYVAMDL 566 (808)
Q Consensus 489 ~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I 566 (808)
........+.+|+.+.|.|.+ .+.| ++.|+|+|||+.+..+..+..... .....|.|
T Consensus 623 -------------------~~~~~~~~~~~G~~v~L~C~~--~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i 681 (816)
T 3dmk_A 623 -------------------PFAFEEGPAQVGQYLTLHCSV--PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681 (816)
T ss_dssp -------------------CCCCCSSCEESSCEEEEEEBC--CCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEE
T ss_pred -------------------cccccccccCCCCeEEEEEEE--eCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEE
Confidence 111111147889999999998 5444 559999999999977666554433 34568999
Q ss_pred CCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 567 ~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
.++..+|+|.|+|.|.|..|....++.|.|..+ |.|...+. ..
T Consensus 682 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~------------------------------------P~~~~~~~-~~ 724 (816)
T 3dmk_A 682 EAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP------------------------------------PRWILEPT-DK 724 (816)
T ss_dssp ESCCGGGCEEEEEEEECSSCEEEEEEEECEEEE------------------------------------EEEEECCC-CE
T ss_pred ccCChhhCEEEEEEEEeCCccEEEEEEEEEEeC------------------------------------Cceeeecc-cc
Confidence 999999999999999999999999999999875 44444433 25
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEcc-------CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK-------MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+.+|+.++|.|.+ .|.|.|.|+|+|+|..+. .+.++.+ ..+ +|.|.++..+|+|.|+|.|.|.+|.
T Consensus 725 ~v~~G~~v~l~C~~--~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~ 798 (816)
T 3dmk_A 725 AFAQGSDAKVECKA--DGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV--EEG--TLHVDNIQKTNEGYYLCEAINGIGS 798 (816)
T ss_dssp EEETTCCEEEECEE--EEESCCEEECCEECSSSTTCCBCCCCBTTEEE--ETT--EEEECSCCGGGCEEEEEEEECSSSS
T ss_pred eecCCCcEEEEEEE--ecCCCCeEEEEecCCCCCccccccccCCCEEe--cCC--EEEECcCChhhCeEEEEEEEeCCCC
Confidence 67899999999999 799999999999875543 2233333 333 7999999999999999999999999
Q ss_pred eEEEEEEEEEeC
Q psy2145 720 AVSSTSLKVKSK 731 (808)
Q Consensus 720 ~~~s~~l~V~~~ 731 (808)
+..++.+..+..
T Consensus 799 ~~~~v~~~~~~~ 810 (816)
T 3dmk_A 799 GLSAVIMISVQA 810 (816)
T ss_dssp CEEEEEEEEEEC
T ss_pred CcEEEEEEEeec
Confidence 999988876543
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=529.17 Aligned_cols=494 Identities=20% Similarity=0.291 Sum_probs=381.9
Q ss_pred CCCccccccccc-cceeeeccCCCchhhhhhh------ccCC---ccceeecC--CCCccccCCCCcEEEEEEEeeCCCC
Q psy2145 13 SSPYLSSKKETS-YHWQNVPVPEWSKEQENAK------KKKN---FIYYTVTK--PKSIENLRERGHAHFECKLEPVTDS 80 (808)
Q Consensus 13 ~~~~~~~~~ed~-g~y~c~~~~~~~~~~~~~~------~~~~---~~~~~~~~--p~~~~~v~~G~~v~l~C~~~~~~~p 80 (808)
..-+..++.+|+ |.|.|.+.+.......... .... ..+.+... +... .+.+|+.+.|.|.+. +.|
T Consensus 200 ~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~-~v~~g~~v~L~C~~~--g~p 276 (816)
T 3dmk_A 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK-TYSGSSTMALLCPAQ--GYP 276 (816)
T ss_dssp CEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEE-EECTTSCEEECCCCB--CSS
T ss_pred eEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccce-EEeCCCeEEEEEEee--ecC
Confidence 344667888998 9999999764322211000 0000 01111111 1233 678999999999998 578
Q ss_pred CceEEEEeCCEE------eeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccc
Q psy2145 81 NLKVEWFKNGRP------VTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQN 154 (808)
Q Consensus 81 ~~~v~W~~~g~~------l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~ 154 (808)
.+.|.|+|++.. +..+.++.. ..+ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 277 ~p~v~W~k~~~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~----------- 341 (816)
T 3dmk_A 277 VPVFRWYKFIEGTTRKQAVVLNDRVKQ--VSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT----------- 341 (816)
T ss_dssp CCEEEEEEECTTSSCEEECCCSSSEEE--ETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC-----------
T ss_pred CCeEEEEeCCCCCccCcceecCCceEe--ccc--eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEc-----------
Confidence 899999995432 222334332 222 79999999999999999999999988888888774
Q ss_pred cccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE
Q psy2145 155 ETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE 234 (808)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~ 234 (808)
.+|.+...+....+.+|++++|.|.+ .+.|.+.+.|+|||..+..+..
T Consensus 342 ---------------------------~~~~~~~~~~~~~v~~G~~v~l~C~~--~g~p~~~v~W~k~g~~~~~~~~--- 389 (816)
T 3dmk_A 342 ---------------------------APLSAKIDPPTQTVDFGRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSES--- 389 (816)
T ss_dssp ---------------------------EEEEEEEESSEEECCTTSCEEEEEEE--EEECCCEEEEEETTEECSCCSS---
T ss_pred ---------------------------CCCceeeCCCceEecCCCCEEEEEEE--eccCCCEEEEEECCEECCCCCC---
Confidence 34556667778889999999999999 5778899999999999865421
Q ss_pred EecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCC
Q psy2145 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQ 314 (808)
Q Consensus 235 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 314 (808)
.|.|.+++.+|+|.|+|.|.|..|....++.|.|... ..
T Consensus 390 -------~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~----------------------------------~~ 428 (816)
T 3dmk_A 390 -------VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR----------------------------------FD 428 (816)
T ss_dssp -------EEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCS----------------------------------SC
T ss_pred -------EEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccc----------------------------------cC
Confidence 7999999999999999999999998888888877531 24
Q ss_pred CCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEe-----eCcEEEEEEccCCCCCCeEEE
Q psy2145 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH-----DFGYVALNFKYTYPEDSGTYT 389 (808)
Q Consensus 315 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~ 389 (808)
+|.+...+....+.+|+.+.|.|.+ .|.|.+.|+|+++|..+..+.++.... ......|.|.++..+|+|.|+
T Consensus 429 ~p~i~~~~~~~~v~~G~~v~L~C~~--~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 506 (816)
T 3dmk_A 429 PPVIRQAFQEETMEPGPSVFLKCVA--GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506 (816)
T ss_dssp CCEEEEECCCEEECSSSCEEEEEEE--ECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEE
T ss_pred CCceEecCcceEEcCCCCEEEEEEE--ecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEE
Confidence 7777777777889999999999998 799999999999999998877765422 223457999999999999999
Q ss_pred EEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeE
Q psy2145 390 CRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTII 469 (808)
Q Consensus 390 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 469 (808)
|.|.|..|....++.|.|...|.+.
T Consensus 507 C~a~n~~g~~~~~~~l~V~~~p~~~------------------------------------------------------- 531 (816)
T 3dmk_A 507 CIAKSKVGVAEHSAKLNVYGLPYIR------------------------------------------------------- 531 (816)
T ss_dssp EEEEETTEEEEEEEEEEECSSCEEC-------------------------------------------------------
T ss_pred EEEEECCCeEEEEEEEEEecCCeeE-------------------------------------------------------
Confidence 9999999999888888887543211
Q ss_pred ecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC
Q psy2145 470 TDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549 (808)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~ 549 (808)
.+... .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+..
T Consensus 532 ---------------------------------------~~~~~-~v~~G~~v~l~C~~--~g~p~~~i~W~k~~~~l~~ 569 (816)
T 3dmk_A 532 ---------------------------------------QMEKK-AIVAGETLIVTCPV--AGYPIDSIVWERDNRALPI 569 (816)
T ss_dssp ---------------------------------------CCCCE-EEETTCCEEEECCE--ECSSEEEEEEEETTEESCC
T ss_pred ---------------------------------------ccCCe-EEecCCeEEEEEEe--cCCCCCEEEEEECCeEccc
Confidence 11111 47789999999999 7899999999999999987
Q ss_pred CCCeEEEeeCcEEEEEECCCC-CCCCEEEEEEEEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCC
Q psy2145 550 SSRITTKHDFGYVAMDLSHVR-AEDEGIYICKATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQ 627 (808)
Q Consensus 550 ~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~ 627 (808)
+.+.....+ + +|.|.++. .+|+|.|+|.|.|..|. ...++.|.|...|.+
T Consensus 570 ~~~~~~~~~-~--~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~------------------------- 621 (816)
T 3dmk_A 570 NRKQKVFPN-G--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI------------------------- 621 (816)
T ss_dssp STTEEECTT-S--EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCC-------------------------
T ss_pred CCceEEecC-C--eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCcc-------------------------
Confidence 777655433 3 79999998 58999999999999995 444567777654432
Q ss_pred CCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccCCCCC
Q psy2145 628 EPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKCVPAD 705 (808)
Q Consensus 628 ~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D 705 (808)
.........+.+|+.++|.|.+ .|.| ++.|.|++||..+..+.++.+... ...+.|.|.++..+|
T Consensus 622 -----------~~~~~~~~~~~~G~~v~L~C~~--~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d 688 (816)
T 3dmk_A 622 -----------IPFAFEEGPAQVGQYLTLHCSV--PGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASH 688 (816)
T ss_dssp -----------BCCCCCSSCEESSCEEEEEEBC--CCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGG
T ss_pred -----------ccccccccccCCCCeEEEEEEE--eCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhh
Confidence 1111123457889999999998 5555 459999999999987766665543 456799999999999
Q ss_pred cEEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 706 SGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 706 ~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
+|.|+|.|.|.+|..+.++.|.|..+|.+...
T Consensus 689 ~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~ 720 (816)
T 3dmk_A 689 AGNFTCHARNLAGHQQFTTPLNVYVPPRWILE 720 (816)
T ss_dssp CEEEEEEEECSSCEEEEEEEECEEEEEEEEEC
T ss_pred CEEEEEEEEeCCccEEEEEEEEEEeCCceeee
Confidence 99999999999999999999999988876543
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=492.81 Aligned_cols=463 Identities=17% Similarity=0.239 Sum_probs=346.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCC-CCceEEEEeCCEEe-----e---------ccCcEEEEe--eCCeEEEEEccc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFKNGRPV-----T---------IGHRFRPIH--DFGYVALDIIDT 115 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~-p~~~v~W~~~g~~l-----~---------~~~r~~~~~--~~~~~~L~I~~~ 115 (808)
+..|..+ .+.+|++++|.|.+.+... ....|.|+|++..+ . ...|+.+.. +++.++|.|.++
T Consensus 4 i~~P~~v-~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v 82 (585)
T 2ocw_A 4 IFGPEEV-NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQL 82 (585)
T ss_pred ccCccee-EEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCC
Confidence 5678888 8999999999999985211 13489999998532 1 134666554 456678999999
Q ss_pred CcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceee
Q psy2145 116 IPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEI 195 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v 195 (808)
+.+|+|.|+|.|.|..|.....+.|.|. .+|.|...+....+
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~--------------------------------------~~p~~~~~~~~~~v 124 (585)
T 2ocw_A 83 SQDDSGRYKCGLGINSRGLSFDVSLEVS--------------------------------------QGPGLLNDTKVYTV 124 (585)
T ss_pred CcccCEEEEEEcccCCCCceEEEEEEEe--------------------------------------cCccccCCCccEEE
Confidence 9999999999999998888888888884 45667777788889
Q ss_pred cCCCeEEEEEEEeecCCCCeEEEEeeCCEEcc----C---------CCceEEEecC---ceEEEEEccCCCCCcEEEEEE
Q psy2145 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK----S---------GSRFTETNNF---GFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~----~---------~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
.+|+.++|.|.+.+ +.|.+.+.|+|++..+. . ..++.+..++ +.++|.|.+++.+|+|.|+|.
T Consensus 125 ~~G~~v~l~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 203 (585)
T 2ocw_A 125 DLGRTVTINCPFKT-ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQ 203 (585)
T ss_pred EcCCCEEEEEEecC-CCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEE
Confidence 99999999999942 44567899999876421 1 2344443332 445899999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
|.|..|.....+.|.|... + +..+.+.+|+.+.|.|.+
T Consensus 204 a~n~~g~~~~~~~l~V~~~------------------------------------~------p~~~~~~~G~~v~l~C~~ 241 (585)
T 2ocw_A 204 AGDDSNSNKKNADLQVLKP------------------------------------E------PELVYEDLRGSVTFHCAL 241 (585)
T ss_pred eccCCccccceEEEEEccC------------------------------------C------CceeEEcCCCcEEEEEEc
Confidence 9999998888888888642 1 223457799999999997
Q ss_pred eecCCCc-cEEEEE-ECCEe---cc---------CCCcEEEEee--CcEEEEEEccCCCCCCeEEEEEEEcCCcceE---
Q psy2145 340 IPVGDSK-LKVTWL-RNGVP---IQ---------ASNRVSTMHD--FGYVALNFKYTYPEDSGTYTCRAVNELGEAV--- 400 (808)
Q Consensus 340 ~~~g~p~-~~v~W~-~~g~~---l~---------~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~--- 400 (808)
. ...|. +.+.|+ +||.. +. ...++.+..+ .+..+|.|.++..+|+|.|+|.|.|. |...
T Consensus 242 ~-~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~ 319 (585)
T 2ocw_A 242 G-PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGS 319 (585)
T ss_pred C-CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccC
Confidence 1 22222 789997 88832 21 1334444432 45568999999999999999999995 5444
Q ss_pred --EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchh
Q psy2145 401 --TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGL 478 (808)
Q Consensus 401 --~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (808)
..+.|.|..++.+
T Consensus 320 ~~~~~~l~V~~~p~~----------------------------------------------------------------- 334 (585)
T 2ocw_A 320 PIQAWQLFVNEESTI----------------------------------------------------------------- 334 (585)
T ss_pred ceeeEEEEEeccccc-----------------------------------------------------------------
Confidence 6677777754322
Q ss_pred hhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEE----EEEE--CCE--ecCC-
Q psy2145 479 EKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKV----EWFR--NEK--PLED- 549 (808)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v----~W~k--~g~--~l~~- 549 (808)
...+... .+.+|+.+.|.|.+ .+.|.+.+ .|+| ||. .+..
T Consensus 335 ----------------------------~~~~~~~-~~~~G~~v~l~C~~--~~~p~p~i~~w~~W~~~~~g~~~~l~~~ 383 (585)
T 2ocw_A 335 ----------------------------PRSPTVV-KGVAGSSVAVLCPY--NRKESKSIKYWCLWEGAQNGRCPLLVDS 383 (585)
T ss_pred ----------------------------ccCCcce-EEEeCCcEEEEEec--CCCCCccEEEEEEEEccCCCCCceeeee
Confidence 2222222 57899999999999 79999877 7999 887 4432
Q ss_pred --------CCCeEEEe--eCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCccccccccccc
Q psy2145 550 --------SSRITTKH--DFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELE 619 (808)
Q Consensus 550 --------~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~ 619 (808)
..++.+.. ..+.++|.|.+++.+|+|.|+|.| |..|....++.|.|...+
T Consensus 384 ~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~------------------- 443 (585)
T 2ocw_A 384 EGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGE------------------- 443 (585)
T ss_pred cceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCc-------------------
Confidence 34555543 345567999999999999999999 999999999999997642
Q ss_pred CCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEe--eCCCCCeEEEEEECCEEccCCCc------EE-EEEe
Q psy2145 620 QPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV--PVGDPTMRFEWFVNGVELKMGSR------FH-VQHD 690 (808)
Q Consensus 620 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~--~~g~P~p~i~W~~~g~~l~~~~~------~~-~~~~ 690 (808)
|.+.. .....+.+|+.+.|.|.+. +.|.|.|.|.|+|||..+..+.. +. +..+
T Consensus 444 ----------------p~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~ 505 (585)
T 2ocw_A 444 ----------------PNLKV--PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505 (585)
T ss_pred ----------------ccccc--CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCc
Confidence 22221 2235688999999999993 12889999999999998864321 22 2223
Q ss_pred CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE-EEEEEEeCCC
Q psy2145 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSS-TSLKVKSKSD 733 (808)
Q Consensus 691 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s-~~l~V~~~p~ 733 (808)
+..++|.|.++..+|+|.|+|.|.|.+|...+. +.|.|..+|.
T Consensus 506 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~ 549 (585)
T 2ocw_A 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA 549 (585)
T ss_pred ccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeee
Confidence 456799999999999999999999999977654 9999999874
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=495.25 Aligned_cols=523 Identities=18% Similarity=0.263 Sum_probs=359.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec-------------------cCcEEEEeeCCeEEEEEc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI-------------------GHRFRPIHDFGYVALDII 113 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~-------------------~~r~~~~~~~~~~~L~I~ 113 (808)
...|..+ .+.+|++++|.|...+ .+...|.|||+...... ..|+.+.. ..+|.|.
T Consensus 3 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~---~~sL~I~ 76 (642)
T 1e07_A 3 TIESTPF-NVAEGKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP---NASLLIQ 76 (642)
T ss_pred eEeccCC-cccccccEEEEEccCC--CCceEEEEECCcccCCcceEEEEEccccccccCccccCceeecc---CCcEEEC
Confidence 3456677 8999999999999763 46679999994422110 11222221 2379999
Q ss_pred ccCcCCCeeEEEEEEecC-cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCc
Q psy2145 114 DTIPEDSGTYTCRAVNLV-GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN 192 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 192 (808)
+++.+|+|.|+|.+.+.. +.....+.|.|... ..+|.|... ..
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~p~i~~~-~~ 120 (642)
T 1e07_A 77 NIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE-----------------------------------LPKPSISSN-NS 120 (642)
T ss_pred CCCcccCcEEEEEEEcCCCeEEEEEEEEEeccc-----------------------------------CCCCcEEcc-Cc
Confidence 999999999999999863 44466777777532 234555443 34
Q ss_pred eeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeE-EEEE
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA-VTSG 271 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~ 271 (808)
..+.+|+.+.|.|.+ .+ |.+.|.|+++|..+..+.++.+..+++ .|.|.+++.+|+|.|+|.|.|..|.. +..+
T Consensus 121 ~~v~~g~~v~l~C~~--~~-p~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~ 195 (642)
T 1e07_A 121 KPVEDKDAVAFTCEP--ET-QDATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSV 195 (642)
T ss_pred eeEecCCcEEEEEEC--CC-CCeeEEEEECCeECCCCCceEEcCCCC--EEEEeCCCcccCeeEEEEEecCCCCcccceE
Confidence 568899999999999 45 889999999999998888777655444 89999999999999999999988864 3457
Q ss_pred EEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEE
Q psy2145 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351 (808)
Q Consensus 272 ~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W 351 (808)
.|.|...| +.....+....+.+|+.+.|.|.+ .|.|.+.|+|
T Consensus 196 ~l~V~~~p------------------------------------~~~~~~~~~~~~~~G~~~~l~C~~--~g~p~~~i~W 237 (642)
T 1e07_A 196 ILNVLYGP------------------------------------DAPTISPLNTSYRSGENLNLSCHA--ASNPPAQYSW 237 (642)
T ss_pred EEEEEeCC------------------------------------CCcEEecCCcccccCCEEEEEEEc--CCCCCcEEEE
Confidence 78876432 112223345667899999999998 7999999999
Q ss_pred EECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE--EEEEEEecccccccccchHHHhhhhcc
Q psy2145 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS--STLFVESKASLQLDTQNEAALQKIQNL 429 (808)
Q Consensus 352 ~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~ 429 (808)
+++|..+..+ ..|.|.++..+|+|.|+|.|.|..|....+ +.|.|...+..+.....+ ...+
T Consensus 238 ~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~-----~~~~ 301 (642)
T 1e07_A 238 FVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNN-----SNPV 301 (642)
T ss_pred EECCeEcccC-----------CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCC-----ceeE
Confidence 9999988432 259999999999999999999999876544 556665543221111000 0000
Q ss_pred ccccccccccceeeeecc-CCeeEEecCCCceeecC-------CceeEe--cccCCchhhhhcccccCCCCCCCCcCCCC
Q psy2145 430 EDTSRFKRKEEEEVEVTQ-QPSFTVQLNGPTELVEG-------EGTIIT--DTQHPKGLEKIRKLEDTEPHKRPEVDDNA 499 (808)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (808)
+. .......+.+.. ++.+.|..++....... ...+.. ......|.+.+...+..+..........
T Consensus 302 ~~----g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~- 376 (642)
T 1e07_A 302 ED----EDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN- 376 (642)
T ss_pred ec----CCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEE-
Confidence 00 011112222222 35666665543211111 111111 1122234444444333222111111111
Q ss_pred ccCCCe-eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 500 TKQRPV-FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 500 ~~~~P~-f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
+..+|. +...+.+. .+.+|+.+.|.|.+ .|.|.+.|+|+|||..+..+. .|.|.++..+|+|.|+
T Consensus 377 V~~~p~~~~~~~~~~-~~~~g~~~~l~C~~--~g~p~~~i~W~~~g~~~~~~~-----------~L~i~~~~~~d~G~Y~ 442 (642)
T 1e07_A 377 VLYGPDDPTISPSYT-YYRPGVNLSLSCHA--ASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYT 442 (642)
T ss_pred EEcCCCCCeecCCce-EecCCCcEEEEEEc--CccCCCeEEEEECCEEcCCCc-----------eEEEccCChhhCeEEE
Confidence 122332 23333333 57899999999999 899999999999999886432 6999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
|.|.|..|....+..+.|...... .+|.+.. .....+.+|+.++|.|
T Consensus 443 C~a~n~~g~~~~s~~~~v~v~~~~-------------------------------~~p~i~~--~~~~~v~~g~~v~l~C 489 (642)
T 1e07_A 443 CQANNSASGHSRTTVKTITVSAEL-------------------------------PKPSISS--NNSKPVEDKDAVAFTC 489 (642)
T ss_pred EEEEcCCCCCcccceEEEEEeccC-------------------------------CCceEec--CCceeecCCCeEEEEE
Confidence 999999998877755555442210 1344432 2234688999999999
Q ss_pred EEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEEEeCCC
Q psy2145 659 RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKSD 733 (808)
Q Consensus 659 ~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~p~ 733 (808)
.+ . .|.+.|.|+|||..|..+.++.+..++ .+|.|.++..+|+|.|+|.|.|..|...+ ++.|.|..+|.
T Consensus 490 ~~--~-~~~~~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~ 560 (642)
T 1e07_A 490 EP--E-AQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD 560 (642)
T ss_pred EC--C-CCCcEEEEEECCEeCCCCCcEEEcCCC--cEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC
Confidence 99 5 488999999999999998888876554 48999999999999999999999998655 68999987664
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=494.57 Aligned_cols=452 Identities=16% Similarity=0.174 Sum_probs=328.6
Q ss_pred ccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 48 FIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 48 ~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
.+|.+...+.++ .+.+|+.++|.|.+. + .|.|+|+|..+. .++...+|.|.+++.+|+|.|+|.|
T Consensus 35 ~pP~i~~~~~~~-~v~~G~~v~l~C~~~--~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G~Y~C~a 99 (524)
T 2ec8_A 35 SPPSIHPGKSDL-IVRVGDEIRLLCTDP--G----FVKWTFEILDET--------NENKQNEWITEKAEATNTGKYTCTN 99 (524)
T ss_dssp CCCEEESCCSEE-ECCTTSCEEEEEECT--T----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCEEEEEEE
T ss_pred CCCccCCCCceE-EEeCCCeEEEEEeCC--c----eEEEcCCCcccc--------ccCccceEEEcccchhhCEEEEEee
Confidence 445555566666 899999999999987 3 899999998772 1223348999999999999999999
Q ss_pred EecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEE
Q psy2145 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL 207 (808)
Q Consensus 128 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~ 207 (808)
.| |. ..++.|.|.. +|.+...+.+..+.+|+.++|.|.+
T Consensus 100 ~n--g~-~~~~~l~V~~--------------------------------------p~~~~~~~~~~~v~~G~~v~l~C~~ 138 (524)
T 2ec8_A 100 KH--GL-SNSIYVFVRD--------------------------------------PAKLFLVDRSLYGKEDNDTLVRCPL 138 (524)
T ss_dssp TT--SC-EEEEEEECCC--------------------------------------SSCSBCCCCCCCEETTSCEEECCCB
T ss_pred cC--Cc-ceEEEEEECC--------------------------------------CCcccccccceEEEcCCeEEEECcC
Confidence 99 53 6666776642 3333356667888999999999999
Q ss_pred eecCCCCeEEEEee-CCEEccCCCceEEEecCceEEEEEccCCCCCcE-EEEEEEEeCceeEEE-EEEEEEeeCCccccc
Q psy2145 208 IPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSG-VYTCRAVNALGQAVT-SGNLLVHSKKSIQTE 284 (808)
Q Consensus 208 ~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~~g~~~~-~~~l~V~~~~~i~~~ 284 (808)
.+.+.+.|.|++ ||..+..+.++.....+ .|.|.+++.+|+| .|+|.|.|..|...+ .+.|.|...
T Consensus 139 --~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~------ 207 (524)
T 2ec8_A 139 --TDPEVTNYSLKGCQGKPLPKDLRFIPDPKA---GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA------ 207 (524)
T ss_dssp --SCCCCSCEEEECSSSCCCCSSCEEEEETTT---EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECC------
T ss_pred --CCCccceEEEEccCCcCcCCCCceeECCCc---cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeC------
Confidence 466668999998 89999877777665544 7999999999999 999999998776544 677777531
Q ss_pred ccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccE-EEEEECCEec--cCC
Q psy2145 285 TQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLK-VTWLRNGVPI--QAS 361 (808)
Q Consensus 285 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l--~~~ 361 (808)
...+|.+...+....+.+|+.+.|.|.+ .|.|.+. +.|+++|..+ ...
T Consensus 208 ---------------------------~~~~p~i~~~~~~~~v~~G~~v~L~C~~--~g~p~p~~i~W~~~~~~~~~~~~ 258 (524)
T 2ec8_A 208 ---------------------------FKAVPVVSVSKASYLLREGEEFTVTCTI--KDVSSSVYSTWKRENSQTKLQEK 258 (524)
T ss_dssp ---------------------------CCSCCEEECSCSEEEEETTSCEEEEEEE--EESSTTCEEEEEETTCSCCCCEE
T ss_pred ---------------------------CCCCCcEEecCCcceEEcCCcEEEEEEE--ecCCCcEEEEEEeCCCCCccccc
Confidence 1247888888878889999999999999 6777776 9999999883 333
Q ss_pred CcEEEEe---eCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccc
Q psy2145 362 NRVSTMH---DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRK 438 (808)
Q Consensus 362 ~~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (808)
.+..+.. ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+.
T Consensus 259 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~-------------------- 318 (524)
T 2ec8_A 259 YNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPM-------------------- 318 (524)
T ss_dssp EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEES--------------------
T ss_pred cccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecC--------------------
Confidence 3222221 12345899999999999999999999999998889999886543321000
Q ss_pred cceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccC
Q psy2145 439 EEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEE 518 (808)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~ 518 (808)
.+.. ..+.+
T Consensus 319 ----------------------------------------------------------------------~~~~-~~v~~ 327 (524)
T 2ec8_A 319 ----------------------------------------------------------------------INTT-VFVND 327 (524)
T ss_dssp ----------------------------------------------------------------------SCSE-EEECT
T ss_pred ----------------------------------------------------------------------CCce-EEEcC
Confidence 0011 25789
Q ss_pred CCceEEEEEEeeCCCCCcE-EEEEECCEecCCCC-CeEEEeeC----cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2145 519 GKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSS-RITTKHDF----GYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~-~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 592 (808)
|+.+.|.|.+ .|.|.+. |+|+|+|..+.... ++....++ ....|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus 328 G~~v~l~C~~--~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~ 405 (524)
T 2ec8_A 328 GENVDLIVEY--EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF 405 (524)
T ss_dssp TCCEEEEEEE--EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred CCcEEEEEEE--eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEE
Confidence 9999999999 7999999 99999999998765 44333332 345899999999999999999999999999999
Q ss_pred EEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEE
Q psy2145 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW 672 (808)
Q Consensus 593 ~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W 672 (808)
.|.|..+ |.|..... +.+| .|.|.+ .|.|.|.|.|
T Consensus 406 ~l~V~~~------------------------------------P~i~~~~~----~~~g---~l~C~~--~g~P~p~i~W 440 (524)
T 2ec8_A 406 NVYVNTK------------------------------------PEILTYDR----LVNG---MLQCVA--AGFPEPTIDW 440 (524)
T ss_dssp EEEECEE------------------------------------EEEEEEEC----CSSS---CEEEEE--EEESCCEEEC
T ss_pred EEEEecC------------------------------------CeEeeccc----CcCc---EEEEEE--EeecCCEEEE
Confidence 9999865 44444332 4466 999999 7999999999
Q ss_pred EECCEEcc--------CCCcE---EEEEeCCEEE-EEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCC
Q psy2145 673 FVNGVELK--------MGSRF---HVQHDFGYVT-LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 673 ~~~g~~l~--------~~~~~---~~~~~~~~~~-L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~ 733 (808)
++||..+. .+.+. ....++.... +.|.....+|+|.|+|.|+|.+|.++.++.|.|+.++.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~ 513 (524)
T 2ec8_A 441 YFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513 (524)
T ss_dssp CCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-----
T ss_pred EECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCH
Confidence 99987662 11111 1111222222 22444446999999999999999999999999997754
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-53 Score=473.45 Aligned_cols=443 Identities=13% Similarity=0.152 Sum_probs=297.8
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcce
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFA 134 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 134 (808)
.+..+ +|.+|++++|.|.+. +.|...+.|++++..+.....+.. .+.+..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 54 ~~~~~-~v~~g~~~~L~c~~~--~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~ 129 (527)
T 3qs9_E 54 EAAAV-EVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129 (527)
T ss_dssp --CEE-EECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEE
T ss_pred eeeeE-EEeccccEEEEEEEe--cCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccE
Confidence 34456 899999999999998 467789999999998876655542 23355679999999999999999999998877
Q ss_pred EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCC
Q psy2145 135 EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT 214 (808)
Q Consensus 135 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~ 214 (808)
.....|.|.... +...........|+.+.|.|.+ .|.|.
T Consensus 130 ~~~~~v~v~~~~---------------------------------------~~~~~~p~~~~~~~~~~L~C~a--~G~P~ 168 (527)
T 3qs9_E 130 TILFTVSIRNTL---------------------------------------LYTLRRPYFRKMENQDALVCIS--ESVPE 168 (527)
T ss_dssp EEEEEEEEC--------------------------------------------CEEEEEEEECSSSSCEEEEE--EESSC
T ss_pred EEEEEEEECCce---------------------------------------eeccCCCcEEecCCceEEEEEE--ceecC
Confidence 777777664110 0011112223457778999999 68999
Q ss_pred eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEE-EEEEEeeCCcccccccccchhhh
Q psy2145 215 MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKSIQTETQHGESLSR 293 (808)
Q Consensus 215 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~i~~~~~~~~~~~~ 293 (808)
+.|.|++++..+..... ...+...+.+..+..+|+|.|+|.|.|..|..... +.|.|..
T Consensus 169 P~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~---------------- 228 (527)
T 3qs9_E 169 PIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ---------------- 228 (527)
T ss_dssp CEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS----------------
T ss_pred CeEEEEECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEec----------------
Confidence 99999998877642211 11111233444556899999999999999987664 5666543
Q ss_pred hhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEe-----
Q psy2145 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH----- 368 (808)
Q Consensus 294 ~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~----- 368 (808)
+|.+ ++....+.+|+.+.|.|.+. .|.|.+.|+|+++|..+.....+....
T Consensus 229 ---------------------~p~~--~p~~~~v~~G~~v~L~C~~~-~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~ 284 (527)
T 3qs9_E 229 ---------------------TPQT--TLPQLFLKVGEPLWIRCKAV-HVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284 (527)
T ss_dssp ---------------------CCCC--SCCEEEECTTSCEEEEEEEE-ESSSCCCEEEECSSSCCCGGGEEEEEEEETTT
T ss_pred ---------------------cCcc--CCCceEEeCCCeEEEEEEEc-cCCCCeEEEEEECCEECCCCceeeeeeeccCc
Confidence 3333 44567889999999999983 289999999999999887654332211
Q ss_pred -eCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeecc
Q psy2145 369 -DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQ 447 (808)
Q Consensus 369 -~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (808)
.....+|.|.++..+|+|.|+|.|.|. ...++.|.|..++.+...
T Consensus 285 ~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~------------------------------- 330 (527)
T 3qs9_E 285 TMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINAT------------------------------- 330 (527)
T ss_dssp EEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECC-------------------------------
T ss_pred ceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccc-------------------------------
Confidence 112246999999999999999999997 566677887754322100
Q ss_pred CCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEE
Q psy2145 448 QPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCR 527 (808)
Q Consensus 448 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~ 527 (808)
+......+.+|+.+.|.|.
T Consensus 331 -------------------------------------------------------------~~~~~~~v~~G~~v~L~C~ 349 (527)
T 3qs9_E 331 -------------------------------------------------------------NSSEDYEIDQYEEFCFSVR 349 (527)
T ss_dssp -------------------------------------------------------------CSCCEECCCTTCCCCEEEE
T ss_pred -------------------------------------------------------------cCcccEEEcCCCeEEEEEE
Confidence 0000125788999999999
Q ss_pred EeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEeccccccccc
Q psy2145 528 LIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQ 607 (808)
Q Consensus 528 v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~ 607 (808)
+ .|.|.|.|+|+|||+.|..+.++.. .++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|..+
T Consensus 350 ~--~g~P~p~i~W~k~g~~l~~~~~~~~--~~~--~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~-------- 415 (527)
T 3qs9_E 350 F--KAYPQIRCTWTFSRKSFPCEQKGLD--NGY--SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-------- 415 (527)
T ss_dssp E--EEESCCEEEEEETTEEEECBCCBCS--SSS--EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CC--------
T ss_pred E--EecCCCEEEEEECCEECcCCccccc--CCc--EEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecC--------
Confidence 9 7999999999999999976655321 222 7999999999999999999999999999999999864
Q ss_pred CcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCc---
Q psy2145 608 HPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR--- 684 (808)
Q Consensus 608 ~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~--- 684 (808)
|.|..... | ..|.|.+ .|+|.|.|.|++++..+.....
T Consensus 416 ----------------------------P~i~~~~~-------~--~~l~C~a--~g~P~p~i~W~~~~~~~~~~~~~~~ 456 (527)
T 3qs9_E 416 ----------------------------PQVLAEAS-------A--SQASCFS--DGYPLPSWTWKKCSDKSPNCTEEIT 456 (527)
T ss_dssp ----------------------------CEEEECCC-------C--E---EEE--ECSSCCEEEEECCC-----CCCCCC
T ss_pred ----------------------------CeEEEeCC-------C--CEEEEEE--EEEcCCeEEEEECCCCcCCCccccc
Confidence 55544321 2 3579999 7999999999998765421110
Q ss_pred ---E-----EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCc
Q psy2145 685 ---F-----HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 685 ---~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
. ..........+.|.-...+|+|.|+|.|.|.+|.++.++.|.|.++-.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p~~~ 514 (527)
T 3qs9_E 457 EGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPF 514 (527)
T ss_dssp CCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC--------
T ss_pred cccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCCcee
Confidence 0 0011111223333333356999999999999999999999988765433
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=525.20 Aligned_cols=500 Identities=15% Similarity=0.197 Sum_probs=85.2
Q ss_pred ccccccccccceeeeccCCCchhhhhhh---cc-CCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCE
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAK---KK-KNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGR 91 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~---~~-~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~ 91 (808)
+..++.+|.|.|.|.+.+.......... .. .......+..+..+ .+.+|+.++|.|.+.+...|.+.|.|+++|.
T Consensus 187 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~ 265 (772)
T 3v2a_R 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI-ELSVGEKLVLNCTARTELNVGIDFNWEYPSS 265 (772)
T ss_dssp EEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCE-EEETTCCEEEEEEEEECTTCCCEEEEECC--
T ss_pred ecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCce-EEecCCcEEEEEEEecCCCCceeEEEecCCc
Confidence 4557788999999999865432221111 11 11122233334445 7899999999999996446678999999998
Q ss_pred EeeccCcEEE--------EeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeee
Q psy2145 92 PVTIGHRFRP--------IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQY 163 (808)
Q Consensus 92 ~l~~~~r~~~--------~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 163 (808)
.+........ .......+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p----------------- 328 (772)
T 3v2a_R 266 KHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP----------------- 328 (772)
T ss_dssp ------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCC-----------------
T ss_pred cCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCC-----------------
Confidence 8765433321 112234589999999999999999999999988888888886432
Q ss_pred eccccccccccccccccCCCCeEEee---cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCce
Q psy2145 164 LEDKSKYQRGEYIEETTTQAPIFTTS---LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240 (808)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~P~~~~~---~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~ 240 (808)
.+... +....+.+|+.++|.|.+ .+.|.+.|.|+|+|..+....++. +.
T Consensus 329 ---------------------~~~~~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~g~~l~~~~~~~-----~~ 380 (772)
T 3v2a_R 329 ---------------------FVAFGSGMESLVEATVGERVRIPAKY--LGYPPPEIKWYKNGIPLESNHTIK-----AG 380 (772)
T ss_dssp ---------------------C----------------------------------------------------------
T ss_pred ---------------------eeEeccCCCCcEEEcCCCcEEEEEEE--eeeCCCeEEEEECCEeCCCCceEc-----cc
Confidence 22222 235678899999999999 578889999999999987643322 22
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEE--EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVT--SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF 318 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~ 318 (808)
..|.|.++..+|+|.|+|.|.|..|.... .+.|.|.. +|.+
T Consensus 381 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~-------------------------------------~P~~ 423 (772)
T 3v2a_R 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV-------------------------------------PPQI 423 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec-------------------------------------CCcc
Confidence 38999999999999999999999887644 44555543 3333
Q ss_pred ccC---CCceEeecCCeEEEEEEEeecCCCccE-EEEEECCEe--------------------------------ccCC-
Q psy2145 319 TQP---MRDIHVAENQAAHFEARLIPVGDSKLK-VTWLRNGVP--------------------------------IQAS- 361 (808)
Q Consensus 319 ~~~---~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~--------------------------------l~~~- 361 (808)
... .....+.+|+.+.|.|.+ .|.|.+. |+|++++.. +...
T Consensus 424 ~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 501 (772)
T 3v2a_R 424 GEKSLISPVDSYQYGTTQTLTCTV--YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCccccCCCCcEEEEeEe--ccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEec
Confidence 211 111237889999999999 7889886 999997432 1111
Q ss_pred CcEEEEee--CcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccccc
Q psy2145 362 NRVSTMHD--FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKE 439 (808)
Q Consensus 362 ~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (808)
.+.....+ .....|.|.++ +|+|.|+|.|.|..|.....+.|.|..++.+.
T Consensus 502 ~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~------------------------- 554 (772)
T 3v2a_R 502 NQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEIT------------------------- 554 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceee-------------------------
Confidence 11111111 12246778776 79999999999999988888888887543221
Q ss_pred ceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCC
Q psy2145 440 EEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEG 519 (808)
Q Consensus 440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G 519 (808)
..+. ..+.+|
T Consensus 555 --------------------------------------------------------------------~~p~--~~~~~G 564 (772)
T 3v2a_R 555 --------------------------------------------------------------------LQPD--MQPTEQ 564 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------ccCC--cccccC
Confidence 1111 136789
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE--------------------EeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT--------------------KHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~--------------------~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
+.+.|.|.+ .|.|.+.|.|+|+|..+........ ....+...|.|.++..+|+|.|+|
T Consensus 565 ~~v~l~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 642 (772)
T 3v2a_R 565 ESVSLWCTA--DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVC 642 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEec--cCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEE
Confidence 999999999 7999999999999977654322111 111223469999999999999999
Q ss_pred EEEeCCeeEEE--EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 580 KATNALGEAVT--TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 580 ~a~N~~G~~~~--s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
.|.|..|.... ...|.|... .+|.|...+.. ..+.+|+.++|.
T Consensus 643 ~a~n~~~~~~~s~~~~l~v~~~----------------------------------~~P~~~~~~~~-~~v~~g~~~~l~ 687 (772)
T 3v2a_R 643 LAQDRKTKKRHCVVRQLTVLER----------------------------------VAPTITGNLEN-QTTSIGESIEVS 687 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCCeEEEEEEeeccccc----------------------------------CCCEeecCCCc-eEEeCCCCEEEE
Confidence 99997665443 344555321 24666665543 578899999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 658 CRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 658 C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
|.+ .|.|.|.|.|+|||.+|..+.++.+..+ ..+|.|.++..+|+|.|+|.|.|.+|.++.++.|.|.++|.....
T Consensus 688 C~~--~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~ 763 (772)
T 3v2a_R 688 CTA--SGNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 763 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEe--CccCCCeEEEEECCeECcCCCCeEEcCC--CcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCcccc
Confidence 999 7999999999999999998877766543 358999999999999999999999999999999999999876654
Q ss_pred C
Q psy2145 738 S 738 (808)
Q Consensus 738 ~ 738 (808)
.
T Consensus 764 ~ 764 (772)
T 3v2a_R 764 E 764 (772)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=466.22 Aligned_cols=463 Identities=16% Similarity=0.211 Sum_probs=321.4
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EEe---e---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RPV---T---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~l---~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
++..|.++ .+.+|++++|.|.+. +.|.+.|.|||++ ..+ . ...|+....+++..+|.|.+++.
T Consensus 3 v~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 79 (523)
T 2rcj_C 3 VLTQPPSA-SGTPGQRVTISCTGT--SSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEA 79 (523)
T ss_pred ccccCCce-EEecCCcEEEEEEEe--ccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCCh
Confidence 35668888 899999999999998 4678899999974 221 1 13577655556777999999999
Q ss_pred CCCeeEEEEEEecCcce---EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCcee
Q psy2145 118 EDSGTYTCRAVNLVGFA---EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 194 (808)
+|+|.|+|.|.|..|.. ...+.|.|.... ..+|.+...+....
T Consensus 80 ~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~----------------------------------~~~P~~~~~~~~~~ 125 (523)
T 2rcj_C 80 EDESDYYCASWNSSDNSYVFGTGTKVTVLGQP----------------------------------KANPTVTLFPPSSE 125 (523)
T ss_pred hhCEEEEEEEccCCCccccccCceEEEeccCC----------------------------------CcCCeEEecCCccc
Confidence 99999999999987632 345667664221 35777777777777
Q ss_pred ecCCCeEEEEEEEeecCCCC--eEEEEeeCCEEccCCCceEE--EecCce----EEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 195 IKEGQRAHFECRLIPVSDNT--MKVEWFHNNVPIKSGSRFTE--TNNFGF----VALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~--~~v~W~~~g~~l~~~~~~~~--~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
+.+|+.++|.|.+. +.|+ +.|.|+|||.++..+.++.. ...++. ..|.|.++..+|+|.|+|.|.|..|.
T Consensus 126 ~~~g~~v~l~C~~~--g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 203 (523)
T 2rcj_C 126 ELQANKATLVCLIS--DFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 203 (523)
T ss_pred ccCCCceEEEEEec--cccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc
Confidence 78999999999994 5543 49999999999876543321 112222 36999999999999999999998887
Q ss_pred EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCC-C
Q psy2145 267 AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD-S 345 (808)
Q Consensus 267 ~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p 345 (808)
...++.+.+... ...+|.+........+.+|+.+.|.|.+ .|. |
T Consensus 204 ~~~~~~~~~~~~---------------------------------~~~~P~v~~~~~~~~~~~G~~~~l~C~~--~g~~P 248 (523)
T 2rcj_C 204 VEKTVAPTECSA---------------------------------STKGPSVFPLAPSSKSTSGGTAALGCLV--KDYFP 248 (523)
T ss_pred cccceeeeecCC---------------------------------CCcCCEEEecCCCcccccCCceEEEEEE--eceeC
Confidence 665555433210 1234554433333456799999999998 565 7
Q ss_pred cc-EEEEEECCEeccCCCcEEEEeeCc----EEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccch
Q psy2145 346 KL-KVTWLRNGVPIQASNRVSTMHDFG----YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNE 420 (808)
Q Consensus 346 ~~-~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~ 420 (808)
.+ .|+|+++|..+...........++ ...|.|.++..+| |.|+|.|.|..|.....+.|.|...|
T Consensus 249 ~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P--------- 318 (523)
T 2rcj_C 249 QPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLP--------- 318 (523)
T ss_pred CCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCc---------
Confidence 66 899999998764321111112222 2479999999999 99999999999987666555543221
Q ss_pred HHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCc
Q psy2145 421 AALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNAT 500 (808)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (808)
T Consensus 319 -------------------------------------------------------------------------------- 318 (523)
T 2rcj_C 319 -------------------------------------------------------------------------------- 318 (523)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC----cEEEEEECCEecCCCCCeEE-EeeCcE----EEEEECCCCC
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT----LKVEWFRNEKPLEDSSRITT-KHDFGY----VAMDLSHVRA 571 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~----~~v~W~k~g~~l~~~~~~~~-~~~~~~----~~L~I~~v~~ 571 (808)
+.++.++.....+.+|+.+.|.|.+ .|.|+ +.|+|+|||..+........ ...++. ..|.|.++..
T Consensus 319 ---~~~~~~p~~~~~v~~g~~~~l~C~~--~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~ 393 (523)
T 2rcj_C 319 ---SVFLFPPKPKDTLMISRTPEVTCVV--VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNW 393 (523)
T ss_pred ---eEEecCCCchhhcccCCceEEEEEE--ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHh
Confidence 1112222222137889999999999 56543 69999999999876543221 122222 3599999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.|..|....+..|.+... ...+|.+.........+..|
T Consensus 394 ~d~G~Y~C~a~n~~~~~~~~~~~~~~~~--------------------------------~~~~P~v~~~~~~~~~~~~~ 441 (523)
T 2rcj_C 394 LDGKEYKCKVSNKALPAPIEKTISKAKG--------------------------------QPREPQVYTLPPSREEMTKN 441 (523)
T ss_pred cCCCeEEEEEeCCCCCCceeEEEEcccC--------------------------------CCCCCEEEEeCCChHHccCC
Confidence 9999999999999887766555553210 01246555544433334445
Q ss_pred ceEEEEEEEeeCCCCCe--EEEEEECCEEccCCCcEEE--EEeCCE---EEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 652 QSAHYDCRVVPVGDPTM--RFEWFVNGVELKMGSRFHV--QHDFGY---VTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p--~i~W~~~g~~l~~~~~~~~--~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
+ ++|.|.+ .|.|+| .|.|+|||.++.......+ ..++.+ +.|.|.....+|+|.|+|.|.|...
T Consensus 442 ~-~~l~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l 512 (523)
T 2rcj_C 442 Q-VSLTCLV--KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 512 (523)
T ss_pred c-eEEEEEE--EeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCc
Confidence 4 9999999 687665 9999999999975433322 223322 3456666666789999999999864
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=455.84 Aligned_cols=421 Identities=15% Similarity=0.164 Sum_probs=302.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceE-----EEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKV-----EWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v-----~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
..|.++ .+.+|++++|.|.+. + |.+.+ .|+|++..+.. . ...+|.|.+++. |+| |+|.|.
T Consensus 4 ~~P~~~-~v~~G~~v~L~C~~~--g-p~p~~~~~~~~w~k~~~~~~~-~--------~~~~l~i~~v~~-d~g-Y~C~a~ 68 (450)
T 1z7z_I 4 VSPSKV-ILPRGGSVLVTCSTS--C-DQPMLLGIETPLPKKELLLPG-N--------NRKVYELSNVQE-DSQ-PMCYSN 68 (450)
T ss_dssp EESSEE-EEETTEEEEEEEECC--S-SCCCEEEECSSSCEEECCSST-T--------TEEEEEEEEECS-CBC-CEEEEE
T ss_pred cCCCce-EEecCCcEEEEEEcc--C-CCcccccccceeeecceEecC-C--------CceEEEEEeccc-CCe-eEEEEe
Confidence 457777 899999999999998 4 67778 99998875532 2 223799999987 999 999998
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
|..+.....+.|.|.. .|..+...+.+..+.+|++++|.|.+
T Consensus 69 ~~~~~~~~~~~l~V~~-------------------------------------~P~~~~~~~~~~~v~~G~~v~L~C~~- 110 (450)
T 1z7z_I 69 CPDGQSTAKTFLTVYW-------------------------------------TPERVELAPLPSWQPVGKNLTLRCQV- 110 (450)
T ss_dssp ETTEEEEEECEEEEEB-------------------------------------CCSEEEECCCCSEECTTSEEEEEEEE-
T ss_pred CCCCcceeEEEEEEEe-------------------------------------CCCcceecCCCceEeeCCeEEEEEEe-
Confidence 8777777788888852 23334456677889999999999999
Q ss_pred ecCCCCe---EEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE--------EEEEEEee
Q psy2145 209 PVSDNTM---KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT--------SGNLLVHS 277 (808)
Q Consensus 209 ~~~~p~~---~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--------~~~l~V~~ 277 (808)
.+.|++ .|.|+|+|.++...... ......+|.|.++..+|+|.|+|.|.|..|.... ...|.|..
T Consensus 111 -~g~~~~~~~~v~W~k~g~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~ 186 (450)
T 1z7z_I 111 -EGGAPRANLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186 (450)
T ss_dssp -ECCBCGGGEEEEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECC
T ss_pred -cCCCCCcCcEEEEeeCCEEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeec
Confidence 466666 99999999998654321 1233458999999999999999999998764322 22333322
Q ss_pred CCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCC-C--ccEEEEEEC
Q psy2145 278 KKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGD-S--KLKVTWLRN 354 (808)
Q Consensus 278 ~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p--~~~v~W~~~ 354 (808)
. ...+|.+..+ ..+.+|+.+.|.|.+ .|. | .+.+.|+++
T Consensus 187 ~---------------------------------~~~~p~~~~~---~~v~~G~~v~l~C~~--~g~~P~~~~~~~W~~~ 228 (450)
T 1z7z_I 187 L---------------------------------PATPPQLVSP---RVLEVDTQGTVVCSL--DGLFPVSEAQVHLALG 228 (450)
T ss_dssp C---------------------------------CSSCCEEECC---SEEETTSEEEEEEEE--ESCTTGGGCEEEEEET
T ss_pred c---------------------------------CCCCCEecCc---eeEEeCCcEEEEEEe--eCCCCCCceEEEEeCC
Confidence 1 0124444332 678899999999999 677 7 799999999
Q ss_pred CEeccCCCcEEEEeeCcEEEEEEccCCCCCCe--EEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccc
Q psy2145 355 GVPIQASNRVSTMHDFGYVALNFKYTYPEDSG--TYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDT 432 (808)
Q Consensus 355 g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G--~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (808)
|..+.. ++....+.....+.+ ++..+|+| .|+|.|.|..|.....+.|.|...+.
T Consensus 229 ~~~~~~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~-------------------- 285 (450)
T 1z7z_I 229 DQRLNP--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA-------------------- 285 (450)
T ss_dssp TEECCC--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCC--------------------
T ss_pred CEeCCc--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCC--------------------
Confidence 998876 333322211112233 78899999 99999999999988888888875321
Q ss_pred cccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCC
Q psy2145 433 SRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQN 512 (808)
Q Consensus 433 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~ 512 (808)
|.|... +
T Consensus 286 -----------------------------------------------------------------------p~i~~~--~ 292 (450)
T 1z7z_I 286 -----------------------------------------------------------------------PNVILT--K 292 (450)
T ss_dssp -----------------------------------------------------------------------CEEEES--C
T ss_pred -----------------------------------------------------------------------CeEecC--C
Confidence 222211 1
Q ss_pred cccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe----eE
Q psy2145 513 IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG----EA 588 (808)
Q Consensus 513 ~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G----~~ 588 (808)
. .+.+|+.+.|.|.+ . |.+.++| +|.++.... ....|.|.++..+|+|.|+|.|.|..| ..
T Consensus 293 ~-~v~~G~~v~l~C~~--~--p~p~i~W--~g~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~ 357 (450)
T 1z7z_I 293 P-EVSEGTEVTVKCEA--H--PRAKVTL--NGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 357 (450)
T ss_dssp S-EEETTCEEEEEEEC----------------------C--------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEE
T ss_pred e-eEeCCCcEEEEEec--C--CCCEeEE--CCEEcCCCC--------ceEEEEEecCcccCCceEEEEEEcCCCCccccc
Confidence 1 57899999999998 4 8999999 888773211 122699999999999999999997665 44
Q ss_pred EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec-CCCccccCCceEEEEEEEeeCCCCC
Q psy2145 589 VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL-TGTSEIMEGQSAHYDCRVVPVGDPT 667 (808)
Q Consensus 589 ~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G~~v~l~C~v~~~g~P~ 667 (808)
..++.|.|...|.+.. .. .....+.+|+.++|.|.+ .|+|.
T Consensus 358 ~~~~~l~V~~~P~~~~------------------------------------~~~p~~~~~~~g~~~~l~C~~--~g~P~ 399 (450)
T 1z7z_I 358 NQTRELRVLYGPRLDE------------------------------------RDCPGNWTWPENSQQTPMCQA--WGNPL 399 (450)
T ss_dssp EEEEECEEEEEEECCS------------------------------------TTSCSEEEEETTCEECCCCCC--EEESC
T ss_pred ceeEEEEEecCCceee------------------------------------ccCCCceeEcCCCeEEEEEec--ccCCC
Confidence 4778888887655421 11 112357889999999999 79999
Q ss_pred eEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 668 MRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 668 p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
|.|.|+|||..+..++. .| ++..+|+|.|+|.|.|.+|.++.++.|.|..+
T Consensus 400 p~i~W~~~g~~~~~~g~----------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 450 (450)
T 1z7z_I 400 PELKCLKDGTFPLPIGE----------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450 (450)
T ss_dssp CEEEEEETTTEECCTTS----------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CcEEEEECCcccCCCCC----------eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence 99999999985544322 12 57889999999999999999999999999864
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-51 Score=488.38 Aligned_cols=502 Identities=14% Similarity=0.167 Sum_probs=125.1
Q ss_pred ccccccccccceeeeccCCCchhhhhhhccCCccceee----cCCCCccccCCC--CcEEEEEEEeeCCCCCceEEEEeC
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTV----TKPKSIENLRER--GHAHFECKLEPVTDSNLKVEWFKN 89 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~v~~G--~~v~l~C~~~~~~~p~~~v~W~~~ 89 (808)
+..++.+|.|.|.|.+................. .+++ ..|..+ .+.+| +.++|.|.+. .|.+.|.|+|+
T Consensus 90 I~~~~~~d~G~Y~C~~~~~~~~~~~~v~v~~~~-~~~~~~~~~~~~~~-~v~~G~~~~v~L~C~~~---~p~~~v~w~~~ 164 (772)
T 3v2a_R 90 IPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR-SPFIASVSDQHGVV-YITENKNKTVVIPCLGS---ISNLNVSLCAR 164 (772)
T ss_dssp -------------------------------------------CEEEE-EEESSCCCEEEECCCCS---CSSCCEEEEEE
T ss_pred ECCCcHhhCEeEEEEEcCCCEEEEEEEEECCCC-CCceEcCcccceeE-EEecCCCCeEEEEccCC---CCCcEEEEEec
Confidence 455778899999999873221111111111011 1111 234445 78899 8999999997 37789999997
Q ss_pred --CEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEE-EEEEEecCCCccccccccccceeeeeecc
Q psy2145 90 --GRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLED 166 (808)
Q Consensus 90 --g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 166 (808)
|..+..+.+....... ..|.|.+++.+|+|.|+|.+.+..+...+. ..+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~---------------------- 220 (772)
T 3v2a_R 165 YPEKRFVPDGNRISWDSK--KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG---------------------- 220 (772)
T ss_dssp TTTEEECCCSSSCEEETT--TEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEEC----------------------
T ss_pred CCCccccCCCceeecCCC--CCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEec----------------------
Confidence 6665544332222222 269999999999999999999864432222 2232221
Q ss_pred ccccccccccccccCCCCeEEeecC-ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEE--------ec
Q psy2145 167 KSKYQRGEYIEETTTQAPIFTTSLK-NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET--------NN 237 (808)
Q Consensus 167 ~~~~~~~~~~~~~~~~~P~~~~~~~-~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~--------~~ 237 (808)
..+|.+...+. ...+.+|++++|.|.+.+...+.+.+.|+++|..+......... ..
T Consensus 221 --------------~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (772)
T 3v2a_R 221 --------------YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286 (772)
T ss_dssp --------------CCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCE
T ss_pred --------------CccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccce
Confidence 12334444444 47899999999999996544667899999999887554333211 11
Q ss_pred CceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCe
Q psy2145 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317 (808)
Q Consensus 238 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~ 317 (808)
....+|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.+..
T Consensus 287 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~---------------------------------- 332 (772)
T 3v2a_R 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAF---------------------------------- 332 (772)
T ss_dssp EEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------------------------
T ss_pred EEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEe----------------------------------
Confidence 1334799999999999999999999999888888898876442210
Q ss_pred eccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 318 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.........+.+|+.+.|.|.+ .|.|.+.|.|+++|..+....++. +...|.|.++..+|+|.|+|.|.|..|
T Consensus 333 ~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~g~~l~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g 405 (772)
T 3v2a_R 333 GSGMESLVEATVGERVRIPAKY--LGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYTVILTNPIS 405 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCcEEEcCCCcEEEEEEE--eeeCCCeEEEEECCEeCCCCceEc-----cceeEEEecCChhcCceEEEEEEECCc
Confidence 0011234567899999999999 788999999999999887643322 234799999999999999999999988
Q ss_pred ceEEE--EEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCC
Q psy2145 398 EAVTS--STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHP 475 (808)
Q Consensus 398 ~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (808)
....+ +.|.|..+|.+...
T Consensus 406 ~~~~s~~~~l~v~~~P~~~~~----------------------------------------------------------- 426 (772)
T 3v2a_R 406 KEKQSHVVSLVVYVPPQIGEK----------------------------------------------------------- 426 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEEEEEEecCCccccc-----------------------------------------------------------
Confidence 76443 45555543322100
Q ss_pred chhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEe--------
Q psy2145 476 KGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKP-------- 546 (808)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~-------- 546 (808)
. ... ....+.+|+.+.|.|.+ .|.|.+. |+|++++..
T Consensus 427 -----------------------------~-~~~--~~~~~~~g~~~~l~C~~--~g~p~p~~v~W~~~~~~~~~~~~~~ 472 (772)
T 3v2a_R 427 -----------------------------S-LIS--PVDSYQYGTTQTLTCTV--YAIPPPHHIHWYWQLEEECANEPSQ 472 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------c-cCC--CccccCCCCcEEEEeEe--ccCCCCcEEEEEEcCCccccccccc
Confidence 0 000 00136789999999999 8999997 999997432
Q ss_pred ------------------------cCCC-CCeEEEee--CcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2145 547 ------------------------LEDS-SRITTKHD--FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 547 ------------------------l~~~-~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~ 599 (808)
+... .++..... .....|.|.++ +|+|.|+|.|.|..|....++.|.|...
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 550 (772)
T 3v2a_R 473 AVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRG 550 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECC
Confidence 1110 11111111 11246888876 7999999999999999999999888864
Q ss_pred ccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEc
Q psy2145 600 AGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL 679 (808)
Q Consensus 600 ~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l 679 (808)
+.+ ...+. ..+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+
T Consensus 551 p~i------------------------------------~~~p~--~~~~~G~~v~l~C~~--~~~p~~~v~W~k~~~~~ 590 (772)
T 3v2a_R 551 PEI------------------------------------TLQPD--MQPTEQESVSLWCTA--DRSTFENLTWYKLGPQP 590 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cee------------------------------------eccCC--cccccCCceEEEEec--cCCCCCCcEEEEcCCcc
Confidence 332 22221 347789999999999 79999999999999877
Q ss_pred cCCCcEEE--------------------EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE--EEEEEE--EeCCCcc
Q psy2145 680 KMGSRFHV--------------------QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS--STSLKV--KSKSDIV 735 (808)
Q Consensus 680 ~~~~~~~~--------------------~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~--s~~l~V--~~~p~~~ 735 (808)
........ ....+..+|.|.++..+|+|.|+|.|.|..|.... .+.|.| ..+|.+.
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~ 670 (772)
T 3v2a_R 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEee
Confidence 54332221 11223456999999999999999999997665432 344554 4566554
Q ss_pred c
Q psy2145 736 S 736 (808)
Q Consensus 736 ~ 736 (808)
.
T Consensus 671 ~ 671 (772)
T 3v2a_R 671 G 671 (772)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=420.02 Aligned_cols=372 Identities=23% Similarity=0.428 Sum_probs=279.5
Q ss_pred CCCCeEEeecCceee---cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccC-CCCCcEEE
Q psy2145 181 TQAPIFTTSLKNCEI---KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC-LPEDSGVY 256 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v---~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y 256 (808)
..+|.|...|.+..+ .+|+.+.|.|.+ .|.|.+.|+|+|||.++..+..+.....+| +|.|.++ ..+|+|.|
T Consensus 3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y 78 (384)
T 3kld_A 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEV--KGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTY 78 (384)
T ss_dssp CEEEEEEECCCCEEEETTCSCSEEEECCEE--EEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEE
T ss_pred CCCCEEEeCCcceEeecCCCCCeEEEEeEe--cCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEE
Confidence 347889988888776 689999999999 578999999999999997554333333344 5777765 78999999
Q ss_pred EEEEEeCceeEEE-EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEE
Q psy2145 257 TCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335 (808)
Q Consensus 257 ~C~a~n~~g~~~~-~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l 335 (808)
+|.|.|..|...+ .+.|.|...+ +..........+.+|+.+.|
T Consensus 79 ~C~A~N~~G~~~s~~~~l~v~~~~------------------------------------~~~~~~~~~~~v~~G~~~~l 122 (384)
T 3kld_A 79 QCIATNSFGTIVSREAKLQFAYLE------------------------------------NFKTRTRSTVSVRRGQGMVL 122 (384)
T ss_dssp EEEEEETTEEEECCCEEEEEEEEC------------------------------------CCSCCCCCCEEEEETCCEEE
T ss_pred EEEEEcCcccEEecceEEEEeccc------------------------------------ccccCCCCceeEEcCCCeEE
Confidence 9999999997643 5666664321 11112234567889999999
Q ss_pred EEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE---EEEEEEeccc
Q psy2145 336 EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS---STLFVESKAS 412 (808)
Q Consensus 336 ~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~ 412 (808)
.|.+. .+.|.+.+.|++++.++....+.....+.+ .|.|.++..+|+|.|+|.|.|..|..... ..+.+.....
T Consensus 123 ~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~ 199 (384)
T 3kld_A 123 LCGPP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199 (384)
T ss_dssp CCCCC-SEESCEEEEEEETTEECCCSSSEEECTTTC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE
T ss_pred ecCCC-CCCCCeEEEEEECCCCCEeeccEEEEcCCC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCc
Confidence 99752 355778999999999887666655544444 69999999999999999999998865421 2222221000
Q ss_pred ccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCC
Q psy2145 413 LQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKR 492 (808)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (808)
.
T Consensus 200 ~------------------------------------------------------------------------------- 200 (384)
T 3kld_A 200 M------------------------------------------------------------------------------- 200 (384)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEEC-CEecCCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 493 PEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRN-EKPLEDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 493 ~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
...+|.+.........+.+|+.+.|.|.+ .|.|.|.+.|+|+ |..+.... ......+ .|.|.+++.
T Consensus 201 -------~~~~p~~~~~~~~~~~~~~G~~v~l~C~~--~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~--~L~I~~v~~ 267 (384)
T 3kld_A 201 -------GEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILWRRADGKPIARKA--RRHKSNG--ILEIPNFQQ 267 (384)
T ss_dssp -------CCEEEEEEEECCSEEEEETTSCEEEEEEE--EEESCCEEEEEETTCCCCCTTC--EECTTSC--EEEECSCCG
T ss_pred -------cccCCceeecCCCceEecCCCcEEEEEEE--eecCCCcEEEEeCCCccccccc--eecCCCc--EEEECCCCh
Confidence 00012222222222257899999999999 7999999999995 55554422 2222223 799999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.|..|....++.|.|... |.|...+.. ..+.+|
T Consensus 268 ~D~G~Y~C~a~N~~G~~~~~~~l~v~~~------------------------------------P~~~~~~~~-~~v~~g 310 (384)
T 3kld_A 268 EDAGSYECVAENSRGKNVAKGQLTFYAQ------------------------------------PNWVQIIND-IHVAME 310 (384)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEEE------------------------------------EEEEECCCC-EEECTT
T ss_pred hhCEEEEEEEEcCCCeEEEEEEEEEecC------------------------------------CccccCCCc-eEecCC
Confidence 9999999999999999999999999874 445544433 568899
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+.+.|.|.+ .|.|.|.|.|+|||.+|..+.++.+. ++ +|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|.+
T Consensus 311 ~~v~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 311 ESVFWECKA--NGRPKPTYRWLKNGDPLLTRDRIQIE--QG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp CCEEEECEE--EEESCCEEEEEETTEECCCBTTEEEE--TT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CCEEEEeEC--CccCCCeEEEEECCEECCCCccEEEe--CC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 999999999 79999999999999999988888763 33 899999999999999999999999999999999963
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=406.69 Aligned_cols=372 Identities=23% Similarity=0.385 Sum_probs=292.1
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC--CceEEEecCceEEEEEccC-----CCCCc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGFVALDIMQC-----LPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~~-----~~~D~ 253 (808)
.....|...|.++.+.+|++++|.|.+.+ +.|.+.|.|+|||..+... .++....++ +|.|.++ +.+|+
T Consensus 19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~~~D~ 94 (403)
T 3laf_A 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDE 94 (403)
T ss_dssp CCSSEEEECCCCEEECTTCCEEECCEEEC-TTCCCEEEEEETTEECCTTSCTTEEECTTS---CEEECSCCCBTTBCSSC
T ss_pred ceeEEEEeCCCceEEecCCcEEEEEEcCC-CCCCceEEEEECCEECccCCcccEEEecCC---cEEEeeeeccCCCCCcc
Confidence 56778889999999999999999999952 4678899999999998643 344443333 5777777 67899
Q ss_pred EEEEEEEEeCceeEE--EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCC
Q psy2145 254 GVYTCRAVNALGQAV--TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQ 331 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~--~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~ 331 (808)
|.|+|.|.|..+... ..+.|.|.. +|.+...+....+.+|+
T Consensus 95 G~Y~C~~~~~~~~~~~s~~~~l~v~~-------------------------------------p~~~~~~~~~~~~~~G~ 137 (403)
T 3laf_A 95 GLYQCEASLGDSGSIISRTAKVMVAG-------------------------------------PLRFLSQTESITAFMGD 137 (403)
T ss_dssp EEEEEEEECGGGCEEECCCEEEEECC-------------------------------------CCEECSCCCCEEEETTS
T ss_pred eEEEEEEEeCCCccEEEEEEEEEecC-------------------------------------CCccccCCCcEEEEcCC
Confidence 999999997544332 345555532 56777777788899999
Q ss_pred eEEEEEEEeecCCCccEEEEEECCEeccC---CCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy2145 332 AAHFEARLIPVGDSKLKVTWLRNGVPIQA---SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV-TSSTLFV 407 (808)
Q Consensus 332 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V 407 (808)
.+.|.|.+ .+.|.+.+.|+++|..+.. ..+.....+ + +|.|.++..+|+|.|+|.|.|..|... ..+.+.|
T Consensus 138 ~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v 212 (403)
T 3laf_A 138 TVLLKCEV--IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS-G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212 (403)
T ss_dssp CEEECCCE--ECSSCCEEEEEESSSBCCCCTTCCSEEECTT-S--CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEE
T ss_pred eEEEEEEE--cccCCCeEEEEECCEeccccCCceEEEEcCC-c--eEEEcccccccCEEEEEEEEcCCCceeccceeEEE
Confidence 99999998 7889999999999988843 334333323 3 699999999999999999999887643 3467777
Q ss_pred EecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccC
Q psy2145 408 ESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDT 487 (808)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (808)
...+.+.
T Consensus 213 ~~~p~~~------------------------------------------------------------------------- 219 (403)
T 3laf_A 213 LSDPGLH------------------------------------------------------------------------- 219 (403)
T ss_dssp ECCCCCC-------------------------------------------------------------------------
T ss_pred ecCCCcc-------------------------------------------------------------------------
Confidence 6543221
Q ss_pred CCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEEC
Q psy2145 488 EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567 (808)
Q Consensus 488 ~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~ 567 (808)
.++.|...+.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+...........++ .|.|.
T Consensus 220 --------------~~~~~~~~~~~~-~~~~g~~~~l~C~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~i~ 280 (403)
T 3laf_A 220 --------------RQLYFLQRPSNV-IAIEGKDAVLECCV--SGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLIS 280 (403)
T ss_dssp --------------EEEEEEECCCCE-EEETTSCEEECCEE--EEESCCEEEEEETTEECCCSSSSEEEETTT--EEEEC
T ss_pred --------------cCceEecCCCce-EecCCCcEEEEEEc--CCCCCCeEEEEECCeeccCCCceEEECCcc--EEEEe
Confidence 011223333333 57899999999999 789999999999999987654433333333 79999
Q ss_pred CCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 568 ~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
++..+|+|.|+|.|.|..|..+.++.|.|..+ |.|...+. ...
T Consensus 281 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~------------------------------------p~~~~~~~-~~~ 323 (403)
T 3laf_A 281 NVTDDDSGTYTCVVTYKNENISASAELTVLVP------------------------------------PWFLNHPS-NLY 323 (403)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE------------------------------------EEEEECCC-CEE
T ss_pred CCCHHHCEEEEEEEEcCCCceEEEEEEEEECC------------------------------------CcEeecCc-ceE
Confidence 99999999999999999999999999999874 33433333 356
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+... ..|.|.++..+|+|.|+|.|.|.+|..+.++.|.
T Consensus 324 ~~~g~~v~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 398 (403)
T 3laf_A 324 AYESMDIEFECAV--SGKPVPTVNWMKNGDVVIPSDYFQIVGG---SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398 (403)
T ss_dssp CCTTCCEEECCEE--EEESCCEEEEEETTEECCCSSSEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EecCCeEEEEEEE--eeccCCEEEEEECCEECCCCCcEEEecC---ccEEEeccccccCEEEEEEEEcCCceEEEEEEEE
Confidence 8899999999999 7999999999999999988888776532 3799999999999999999999999999999999
Q ss_pred EEeCC
Q psy2145 728 VKSKS 732 (808)
Q Consensus 728 V~~~p 732 (808)
|..+|
T Consensus 399 V~~P~ 403 (403)
T 3laf_A 399 VPKPA 403 (403)
T ss_dssp CCCC-
T ss_pred EeCCC
Confidence 98764
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=405.07 Aligned_cols=369 Identities=24% Similarity=0.400 Sum_probs=274.1
Q ss_pred cceeecCCCCcccc---CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEccc-CcCCCeeEE
Q psy2145 49 IYYTVTKPKSIENL---RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDT-IPEDSGTYT 124 (808)
Q Consensus 49 ~~~~~~~p~~~~~v---~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~-~~~D~G~Y~ 124 (808)
.|.++.+|.++ .+ .+|+.+.|.|.+. |.|.+.|+|+|||.+|..+.+++....++ .|.|.++ ..+|+|.|+
T Consensus 5 ~P~f~~~P~~~-~~~~~~eg~~v~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~ 79 (384)
T 3kld_A 5 GPVFVQEPSHV-MFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQ 79 (384)
T ss_dssp EEEEEECCCCE-EEETTCSCSEEEECCEEE--EESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEE
T ss_pred CCEEEeCCcce-EeecCCCCCeEEEEeEec--CCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEE
Confidence 46677788877 44 6899999999998 57888999999999997654444333444 4677665 889999999
Q ss_pred EEEEecCcceE-EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEE
Q psy2145 125 CRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203 (808)
Q Consensus 125 C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L 203 (808)
|.|.|..|... ..+.|.|...+. ........+.+.+|+.+.|
T Consensus 80 C~A~N~~G~~~s~~~~l~v~~~~~-------------------------------------~~~~~~~~~~v~~G~~~~l 122 (384)
T 3kld_A 80 CIATNSFGTIVSREAKLQFAYLEN-------------------------------------FKTRTRSTVSVRRGQGMVL 122 (384)
T ss_dssp EEEEETTEEEECCCEEEEEEEECC-------------------------------------CSCCCCCCEEEEETCCEEE
T ss_pred EEEEcCcccEEecceEEEEecccc-------------------------------------cccCCCCceeEEcCCCeEE
Confidence 99999988653 245555532110 0011223467889999999
Q ss_pred EEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE---EEEEEEeeCCc
Q psy2145 204 ECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT---SGNLLVHSKKS 280 (808)
Q Consensus 204 ~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~ 280 (808)
.|.+. .+.|.+.+.|++++.++....+.......+ .|.|.++..+|+|.|+|.|.|..|.... ...+.+.....
T Consensus 123 ~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~ 199 (384)
T 3kld_A 123 LCGPP-PHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV 199 (384)
T ss_dssp CCCCC-SEESCEEEEEEETTEECCCSSSEEECTTTC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE
T ss_pred ecCCC-CCCCCeEEEEEECCCCCEeeccEEEEcCCC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCc
Confidence 99763 255678999999999986655544444444 7999999999999999999998775432 12333321000
Q ss_pred ccccccccchhhhhhhhhccccccccccccccCCCCee-ccCCCceEeecCCeEEEEEEEeecCCCccEEEEEE-CCEec
Q psy2145 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPI 358 (808)
Q Consensus 281 i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l 358 (808)
....+|.+ ...+....+.+|+.+.|.|.+ .|.|.+.+.|++ +|.++
T Consensus 200 ------------------------------~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~--~g~P~p~i~W~k~~~~~~ 247 (384)
T 3kld_A 200 ------------------------------MGEYEPKIEVQFPETVPAEKGTTVKLECFA--LGNPVPTILWRRADGKPI 247 (384)
T ss_dssp ------------------------------CCCEEEEEEEECCSEEEEETTSCEEEEEEE--EEESCCEEEEEETTCCCC
T ss_pred ------------------------------ccccCCceeecCCCceEecCCCcEEEEEEE--eecCCCcEEEEeCCCccc
Confidence 00112333 233456678899999999999 789999999999 45555
Q ss_pred cCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccc
Q psy2145 359 QASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRK 438 (808)
Q Consensus 359 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (808)
....+ ....++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|...|
T Consensus 248 ~~~~~--~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P--------------------------- 296 (384)
T 3kld_A 248 ARKAR--RHKSNG--ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP--------------------------- 296 (384)
T ss_dssp CTTCE--ECTTSC--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE---------------------------
T ss_pred cccce--ecCCCc--EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCC---------------------------
Confidence 44322 222223 79999999999999999999999999888889887643
Q ss_pred cceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccC
Q psy2145 439 EEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEE 518 (808)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~ 518 (808)
.|...+.+. .+.+
T Consensus 297 ------------------------------------------------------------------~~~~~~~~~-~v~~ 309 (384)
T 3kld_A 297 ------------------------------------------------------------------NWVQIINDI-HVAM 309 (384)
T ss_dssp ------------------------------------------------------------------EEEECCCCE-EECT
T ss_pred ------------------------------------------------------------------ccccCCCce-EecC
Confidence 333333333 5788
Q ss_pred CCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 519 GKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 519 G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
|+.+.|.|.+ .|.|.|.|+|+|||.+|..+.++.+. ++ +|.|.++..+|+|.|+|.|.|..|...+++.|.|..
T Consensus 310 g~~v~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 310 EESVFWECKA--NGRPKPTYRWLKNGDPLLTRDRIQIE--QG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp TCCEEEECEE--EEESCCEEEEEETTEECCCBTTEEEE--TT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CCCEEEEeEC--CccCCCeEEEEECCEECCCCccEEEe--CC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 9999999999 79999999999999999888887654 33 799999999999999999999999999999999863
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=404.94 Aligned_cols=359 Identities=15% Similarity=0.179 Sum_probs=242.6
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.++..+..+.+.+|+++.|.|.+ .+.|.+.|.|++++..+.....+.. ...+..+|.|.+++.+|+|.|+|.|.|.
T Consensus 49 ~~~~~~~~~v~V~~G~~v~L~C~v--~g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~ 125 (423)
T 3qs7_E 49 SGTVYEAAAVEVDVSASITLQVLV--DAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSE 125 (423)
T ss_dssp -------CEEEECSSCCEEEEEEC--SCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred CcceeccccEEEecCCcEEEEEEE--EcCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcC
Confidence 345556668999999999999999 6789999999999988765433221 2223457999999999999999999999
Q ss_pred ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC
Q psy2145 264 LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343 (808)
Q Consensus 264 ~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g 343 (808)
.|.....+.|.|..++ .+. +.....+..|+.+.|.|.+ .|
T Consensus 126 ~g~~~~~~~l~V~~~p-------------------------------------~~~-~~~p~~~~~~~~~~L~C~a--~G 165 (423)
T 3qs7_E 126 ATNYTILFTVSIRNTL-------------------------------------LYT-LRRPYFRKMENQDALVCIS--ES 165 (423)
T ss_dssp -CEEEEEEEEEEC------------------------------------------C-EEEEEEEECSSSSCEEEEE--EE
T ss_pred CCcEEEEEEEEEecCc-------------------------------------ccc-ccCCcEeccCCceEEEEEE--ee
Confidence 9998888888886422 221 1112234568888999999 79
Q ss_pred CCccEEEEEECCEeccCCCc---EEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecccccccccc
Q psy2145 344 DSKLKVTWLRNGVPIQASNR---VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVESKASLQLDTQN 419 (808)
Q Consensus 344 ~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~ 419 (808)
.|.|.|+|++++..+..... ..+..... .| ...|+|.|+|.|.|..|..... +.|.|...+..
T Consensus 166 ~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~--~l-----~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~------ 232 (423)
T 3qs7_E 166 VPEPIVEWVLCDSQGESCKEESPAVVKKEEK--VL-----HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT------ 232 (423)
T ss_dssp SSCCEEEEEEC-------------CEEECCS--EE-----CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS------
T ss_pred ecCCeEEEEECCCCCccccccccccccccce--EE-----ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc------
Confidence 99999999999886532110 00111111 11 5789999999999999987553 55555432211
Q ss_pred hHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCC
Q psy2145 420 EAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNA 499 (808)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (808)
T Consensus 233 -------------------------------------------------------------------------------- 232 (423)
T 3qs7_E 233 -------------------------------------------------------------------------------- 232 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCC-CCCcEEEEEECCEecCCCCCeEEEe------eCcEEEEEECCCCCC
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKH------DFGYVAMDLSHVRAE 572 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~~~v~W~k~g~~l~~~~~~~~~~------~~~~~~L~I~~v~~~ 572 (808)
++.+ ..+.+|+.+.|.|.+ .| .|.+.|+|+|+|..+.....+.... .....+|.|.+++.+
T Consensus 233 ---------~~~~-~~v~~G~~v~L~C~~--~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 300 (423)
T 3qs7_E 233 ---------TLPQ-LFLKVGEPLWIRCKA--VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300 (423)
T ss_dssp ---------STTE-EEEETTSCEEEEEEE--EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTT
T ss_pred ---------CCCc-eEEeCCCeEEEEEEE--EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHH
Confidence 0111 157899999999999 56 7789999999999886653331111 111236999999999
Q ss_pred CCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec-CCCccccCC
Q psy2145 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL-TGTSEIMEG 651 (808)
Q Consensus 573 D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G 651 (808)
|+|.|+|.|.|. ...++.|.|...|.+ .... .....+.+|
T Consensus 301 D~G~Y~C~A~N~---~~~~~~L~V~~~p~i------------------------------------~~~~~~~~~~v~~G 341 (423)
T 3qs7_E 301 DTGYYTCSSSKH---PSQSALVTIVEKGFI------------------------------------NATNSSEDYEIDQY 341 (423)
T ss_dssp TCEEEEEEETTE---EEEEEEEEEESSCEE------------------------------------EEC---CEECCCTT
T ss_pred HCEEEEEEEecC---CCceEEEEEEeCCcc------------------------------------eEcCCCccEEecCC
Confidence 999999999998 677788888865432 2111 123468899
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
+.+.|.|.+ .|+|.|.|.|+|||..|..+.+.. .++ ..+.+..+..+|+|.|+|.|+|.+|.++.++.|.|.++
T Consensus 342 ~~v~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~---~~~-~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~ 415 (423)
T 3qs7_E 342 EEFCFSVRF--KAYPQIRCTWTFSRKSFPCEQKGL---DNG-YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415 (423)
T ss_dssp CCCCEEEEE--EEESCCEEEEEETTEEEECBCCBC---SSS-SEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred CeEEEEEEE--EEcCCCeEEEEECCEECCCccccc---cCC-cEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence 999999999 799999999999999997653100 001 12223556779999999999999999999999999988
Q ss_pred CCcc
Q psy2145 732 SDIV 735 (808)
Q Consensus 732 p~~~ 735 (808)
|.-.
T Consensus 416 p~~~ 419 (423)
T 3qs7_E 416 TKHH 419 (423)
T ss_dssp ----
T ss_pred Cccc
Confidence 7643
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=402.03 Aligned_cols=366 Identities=24% Similarity=0.391 Sum_probs=281.8
Q ss_pred CCCeEEeecCceee---cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC--CceEEEecCceEEEEEccCCC-CCcEE
Q psy2145 182 QAPIFTTSLKNCEI---KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGFVALDIMQCLP-EDSGV 255 (808)
Q Consensus 182 ~~P~~~~~~~~~~v---~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~~~~-~D~G~ 255 (808)
.+|.|...|.+..+ .+|++++|.|.+ .+.|.+.|.|+|||..+..+ .++... ++ +|.|.++.. +|+|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~--~g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~--~L~i~~~~~~~D~G~ 76 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLV--AG--DLVISNPVKAKDAGS 76 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEE--EEESCCEEEEEETTEECCCSTTSSEEEE--TT--EEEEESCCHHHHCEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEe--cCCCCCEEEEEECCEECCcCCCccEEee--CC--eEEEecccccccCEE
Confidence 47899999988876 789999999999 46788899999999998754 344433 33 799999997 99999
Q ss_pred EEEEEEeCceeEEE-EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEE
Q psy2145 256 YTCRAVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334 (808)
Q Consensus 256 Y~C~a~n~~g~~~~-~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 334 (808)
|+|.|.|..|...+ .+.|.|...+ +..........+.+|+.+.
T Consensus 77 Y~C~a~n~~g~~~s~~~~l~v~~~~------------------------------------~~~~~~~~~~~v~~G~~v~ 120 (382)
T 1cs6_A 77 YQCVATNARGTVVSREASLRFGFLQ------------------------------------EFSAEERDPVKITEGWGVM 120 (382)
T ss_dssp EEEEEEETTEEEECCCEEEEEEEEC------------------------------------CCCSSCCCCEEEETTSCEE
T ss_pred EEEEEEcCCcEEEecceEEEeeccc------------------------------------cccccCCCceEEecCCcEE
Confidence 99999999987643 5677775422 1111234457789999999
Q ss_pred EEEEEeecCCCccEEEEEECCEecc--CCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-----EEEEE
Q psy2145 335 FEARLIPVGDSKLKVTWLRNGVPIQ--ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-----STLFV 407 (808)
Q Consensus 335 l~C~~~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-----~~l~V 407 (808)
|.|.+. .+.|.+.+.|+++|.++. .+.+.....+.+ .|.|.++..+|+|.|+|.|.|..|..... +.|.|
T Consensus 121 l~C~~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v 197 (382)
T 1cs6_A 121 FTCSPP-PHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197 (382)
T ss_dssp ECCCCC-SEESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEE
T ss_pred EEeCCC-CCCCCcEEEEEECCCccccccCceEEEecCce--EEEEEeeCcccCeeEEEEEEEccccccceeEccceeecc
Confidence 999852 466889999999997753 334444433333 69999999999999999999987644322 23333
Q ss_pred EecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccC
Q psy2145 408 ESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDT 487 (808)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (808)
....
T Consensus 198 ~~~~---------------------------------------------------------------------------- 201 (382)
T 1cs6_A 198 AAED---------------------------------------------------------------------------- 201 (382)
T ss_dssp ESCC----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 2110
Q ss_pred CCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEEC
Q psy2145 488 EPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567 (808)
Q Consensus 488 ~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~ 567 (808)
....+|.+.........+.+|+.+.|.|.+ .|.|.+.+.|+|++..+.... . .....|.|.
T Consensus 202 -----------~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~--~g~p~~~i~W~~~~~~~~~~~----~--~~~~~L~i~ 262 (382)
T 1cs6_A 202 -----------ARQYAPSIKAKFPADTYALTGQMVTLECFA--FGNPVPQIKWRKLDGSQTSKW----L--SSEPLLHIQ 262 (382)
T ss_dssp -----------CCCEEEEEEECCCSEEEEETTCCEEEECEE--EEESCCEEEEEECCSCCSCCC----S--BSSSEEEEC
T ss_pred -----------cccCCCceeccCCCceEEeCCCeEEEEEEE--ccCCCCEEEEEECCcccccEE----e--cCCcEEEEc
Confidence 000123333332222368899999999999 789999999999988765411 1 122279999
Q ss_pred CCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 568 ~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
++..+|+|.|+|.|.|..|....++.|.|... |.|...+. ...
T Consensus 263 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~------------------------------------p~~~~~~~-~~~ 305 (382)
T 1cs6_A 263 NVDFEDEGTYECEAENIKGRDTYQGRIIIHAQ------------------------------------PDWLDVIT-DTE 305 (382)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE------------------------------------EEEEECCC-CEE
T ss_pred cCChhhCEEEEEEEEcCCCeEEEEEEEEEecC------------------------------------CCcccCCC-ccE
Confidence 99999999999999999999999999999865 44444333 256
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
+.+|+.++|.|.+ .|.|.|.|.|+|||..+..+.++.+. ++ +|.|.++..+|+|.|+|.|.|.+|....++.|.
T Consensus 306 ~~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 379 (382)
T 1cs6_A 306 ADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379 (382)
T ss_dssp EETTCCEEEECEE--EEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EcCCCeEEEEEEe--eeecCCEEEEEECCEECCCCceEEEE--CC--EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEE
Confidence 8899999999999 79999999999999999988887764 33 799999999999999999999999999999999
Q ss_pred EEe
Q psy2145 728 VKS 730 (808)
Q Consensus 728 V~~ 730 (808)
|.+
T Consensus 380 V~a 382 (382)
T 1cs6_A 380 VQA 382 (382)
T ss_dssp EEC
T ss_pred EeC
Confidence 963
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=402.09 Aligned_cols=369 Identities=23% Similarity=0.349 Sum_probs=290.9
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEccc-----CcCCCe
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDT-----IPEDSG 121 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~~~-----~~~D~G 121 (808)
...++..|.++ .+.+|+.++|.|.+.+ +.|.+.|.|+|+|..+..+ .++....++ .|.|.++ +.+|+|
T Consensus 21 ~~~~~~~P~~~-~v~~G~~v~L~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~~~D~G 95 (403)
T 3laf_A 21 SLHFVSEPSDA-VTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDEG 95 (403)
T ss_dssp SSEEEECCCCE-EECTTCCEEECCEEEC-TTCCCEEEEEETTEECCTTSCTTEEECTTS---CEEECSCCCBTTBCSSCE
T ss_pred eEEEEeCCCce-EEecCCcEEEEEEcCC-CCCCceEEEEECCEECccCCcccEEEecCC---cEEEeeeeccCCCCCcce
Confidence 45667889998 8999999999999985 4678899999999998753 455444333 4777777 778999
Q ss_pred eEEEEEEecCcceEE--EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 122 TYTCRAVNLVGFAEV--QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 122 ~Y~C~a~n~~g~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
.|+|.|.|..+.... .+.|.| ..+|.|...+....+.+|+
T Consensus 96 ~Y~C~~~~~~~~~~~s~~~~l~v--------------------------------------~~p~~~~~~~~~~~~~~G~ 137 (403)
T 3laf_A 96 LYQCEASLGDSGSIISRTAKVMV--------------------------------------AGPLRFLSQTESITAFMGD 137 (403)
T ss_dssp EEEEEEECGGGCEEECCCEEEEE--------------------------------------CCCCEECSCCCCEEEETTS
T ss_pred EEEEEEEeCCCccEEEEEEEEEe--------------------------------------cCCCccccCCCcEEEEcCC
Confidence 999999975444332 344444 3467777778888999999
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEccC---CCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEE-EEEEEEE
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIKS---GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAV-TSGNLLV 275 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V 275 (808)
++.|.|.+ .+.|.+.+.|+|+|..+.. ..+..... .+ +|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 138 ~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v 212 (403)
T 3laf_A 138 TVLLKCEV--IGDPMPTIHWQKNQQDLNPIPGDSRVVVLP-SG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212 (403)
T ss_dssp CEEECCCE--ECSSCCEEEEEESSSBCCCCTTCCSEEECT-TS--CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEE
T ss_pred eEEEEEEE--cccCCCeEEEEECCEeccccCCceEEEEcC-Cc--eEEEcccccccCEEEEEEEEcCCCceeccceeEEE
Confidence 99999999 5788889999999998842 33333332 23 799999999999999999999877643 4577777
Q ss_pred eeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECC
Q psy2145 276 HSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355 (808)
Q Consensus 276 ~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g 355 (808)
...+.+ ..++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++|
T Consensus 213 ~~~p~~-------------------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~~~W~~~~ 259 (403)
T 3laf_A 213 LSDPGL-------------------------------HRQLYFLQRPSNVIAIEGKDAVLECCV--SGYPPPSFTWLRGE 259 (403)
T ss_dssp ECCCCC-------------------------------CEEEEEEECCCCEEEETTSCEEECCEE--EEESCCEEEEEETT
T ss_pred ecCCCc-------------------------------ccCceEecCCCceEecCCCcEEEEEEc--CCCCCCeEEEEECC
Confidence 654321 112345556667788999999999999 68889999999999
Q ss_pred EeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccc
Q psy2145 356 VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRF 435 (808)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (808)
..+...........++ .|.|.++..+|+|.|+|.|.|..|....++.|.|..+|
T Consensus 260 ~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p------------------------ 313 (403)
T 3laf_A 260 EVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP------------------------ 313 (403)
T ss_dssp EECCCSSSSEEEETTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE------------------------
T ss_pred eeccCCCceEEECCcc--EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCC------------------------
Confidence 9987654333333333 69999999999999999999999998888999887643
Q ss_pred ccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCccc
Q psy2145 436 KRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDA 515 (808)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~ 515 (808)
.|...+.+. .
T Consensus 314 ---------------------------------------------------------------------~~~~~~~~~-~ 323 (403)
T 3laf_A 314 ---------------------------------------------------------------------WFLNHPSNL-Y 323 (403)
T ss_dssp ---------------------------------------------------------------------EEEECCCCE-E
T ss_pred ---------------------------------------------------------------------cEeecCcce-E
Confidence 222233333 4
Q ss_pred ccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..+.++.+... + .|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 324 ~~~g~~v~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~-~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 398 (403)
T 3laf_A 324 AYESMDIEFECAV--SGKPVPTVNWMKNGDVVIPSDYFQIVGG-S--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398 (403)
T ss_dssp CCTTCCEEECCEE--EEESCCEEEEEETTEECCCSSSEEEETT-T--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred EecCCeEEEEEEE--eeccCCEEEEEECCEECCCCCcEEEecC-c--cEEEeccccccCEEEEEEEEcCCceEEEEEEEE
Confidence 7889999999999 7899999999999999988877766543 3 799999999999999999999999999999999
Q ss_pred EEec
Q psy2145 596 IKTK 599 (808)
Q Consensus 596 V~~~ 599 (808)
|..+
T Consensus 399 V~~P 402 (403)
T 3laf_A 399 VPKP 402 (403)
T ss_dssp CCCC
T ss_pred EeCC
Confidence 8764
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=415.52 Aligned_cols=404 Identities=14% Similarity=0.114 Sum_probs=299.1
Q ss_pred ccccccccccceeeeccCCCchhhhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee-
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT- 94 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~- 94 (808)
+..++.+|+|.|.|.+.|..........+.....+.+...|..+ .+.+|+.++|.|.+.+ +.|.+.+.|||++..+.
T Consensus 79 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~-~v~~G~~v~l~C~~~~-~~~~~~v~W~k~~~~~~~ 156 (585)
T 2ocw_A 79 IAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVY-TVDLGRTVTINCPFKT-ENAQKRKSLYKQIGLYPV 156 (585)
T ss_pred ECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccE-EEEcCCCEEEEEEecC-CCCCccEEEEECCCCCce
Confidence 55678889999999998876554333333333344455666777 8999999999999985 35567899999885421
Q ss_pred ---c---------cCcEEEEeeC---CeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccce
Q psy2145 95 ---I---------GHRFRPIHDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLE 159 (808)
Q Consensus 95 ---~---------~~r~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~ 159 (808)
. ..|+.+..++ +.++|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~-------------- 222 (585)
T 2ocw_A 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP-------------- 222 (585)
T ss_pred EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccC--------------
Confidence 1 3456655443 3458999999999999999999999999888888888531
Q ss_pred eeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEe-eCCEE---c-c------
Q psy2145 160 QIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWF-HNNVP---I-K------ 227 (808)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~-~~g~~---l-~------ 227 (808)
+ +..+.+.+|+.++|.|.+. ...|. +.+.|+ +||.. + .
T Consensus 223 -----------------------~------p~~~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 272 (585)
T 2ocw_A 223 -----------------------E------PELVYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVVVNTLGKRA 272 (585)
T ss_pred -----------------------C------CceeEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceEEeCCCcCC
Confidence 2 2334578999999999972 23333 789997 88842 2 1
Q ss_pred --CCCceEEEe--cCceEEEEEccCCCCCcEEEEEEEEeCceeEE-----EEEEEEEeeCCcccccccccchhhhhhhhh
Q psy2145 228 --SGSRFTETN--NFGFVALDIMQCLPEDSGVYTCRAVNALGQAV-----TSGNLLVHSKKSIQTETQHGESLSRLQQLE 298 (808)
Q Consensus 228 --~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~-----~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e 298 (808)
...++.+.. ..|.++|.|.+++.+|+|.|+|.|.|. |... ..+.|.|..
T Consensus 273 ~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~--------------------- 330 (585)
T 2ocw_A 273 PAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNE--------------------- 330 (585)
T ss_pred cccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEec---------------------
Confidence 133444433 245568999999999999999999995 5443 667787764
Q ss_pred ccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEE----EEEE--CCE--eccC---------C
Q psy2145 299 QGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKV----TWLR--NGV--PIQA---------S 361 (808)
Q Consensus 299 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v----~W~~--~g~--~l~~---------~ 361 (808)
+|.+...+....+.+|+.+.|.|.+ .+.|.+.+ .|++ ||. .+.. .
T Consensus 331 ----------------~p~~~~~~~~~~~~~G~~v~l~C~~--~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~ 392 (585)
T 2ocw_A 331 ----------------ESTIPRSPTVVKGVAGSSVAVLCPY--NRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE 392 (585)
T ss_pred ----------------ccccccCCcceEEEeCCcEEEEEec--CCCCCccEEEEEEEEccCCCCCceeeeecceeecccC
Confidence 4556566677888999999999999 78888877 8999 887 5432 3
Q ss_pred CcEEEEe--eCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccccc
Q psy2145 362 NRVSTMH--DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKE 439 (808)
Q Consensus 362 ~~~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (808)
.++.+.. ..+..+|.|.++..+|+|.|+|.| |..|.....+.|.|...+.
T Consensus 393 ~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p--------------------------- 444 (585)
T 2ocw_A 393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEP--------------------------- 444 (585)
T ss_pred CCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcc---------------------------
Confidence 4555543 345567999999999999999999 9999888888888875321
Q ss_pred ceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCC
Q psy2145 440 EEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEG 519 (808)
Q Consensus 440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G 519 (808)
.+.. +.+. .+.+|
T Consensus 445 -----------------------------------------------------------------~~~~-~~~~-~v~~G 457 (585)
T 2ocw_A 445 -----------------------------------------------------------------NLKV-PGNV-TAVLG 457 (585)
T ss_pred -----------------------------------------------------------------cccc-CCce-eEecC
Confidence 1111 1122 57899
Q ss_pred CceEEEEEEe--eCCCCCcEEEEEECCEecCCCCC------eE-EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 520 KNAHFSCRLI--PVGDPTLKVEWFRNEKPLEDSSR------IT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 520 ~~v~l~C~v~--~~g~P~~~v~W~k~g~~l~~~~~------~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
+.+.|.|.+. +.+.|.+.|.|+|||..+..... +. ....+....|.|.++..+|+|.|+|.|.|..|...+
T Consensus 458 ~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 537 (585)
T 2ocw_A 458 ETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537 (585)
T ss_pred CcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence 9999999982 12788999999999988754321 22 222344568999999999999999999999997665
Q ss_pred E-EEEEEEecc
Q psy2145 591 T-ASMKIKTKA 600 (808)
Q Consensus 591 s-~~l~V~~~~ 600 (808)
. +.|.|..+|
T Consensus 538 ~~~~l~V~~~p 548 (585)
T 2ocw_A 538 AAVYVAVEERK 548 (585)
T ss_pred EEEEEEEEeee
Confidence 5 899998866
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-45 Score=397.55 Aligned_cols=357 Identities=19% Similarity=0.327 Sum_probs=272.1
Q ss_pred CCeEEeecCc-eeecCCCeEEEEEEEeecCCCCeEEEEee-CCEEccCCCceEEEecCceEEEEEccCCCCC------cE
Q psy2145 183 APIFTTSLKN-CEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPED------SG 254 (808)
Q Consensus 183 ~P~~~~~~~~-~~v~~G~~v~L~C~~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D------~G 254 (808)
+|.|+..|.+ +.+.+|+.++|.|.+ .+.|.+.|.|+| ||..+....++.....++ +|.|.+++.+| +|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~--~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~G 78 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKA--SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQ 78 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE--EEESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEEC--CCCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccCc
Confidence 6889888876 568899999999999 578889999999 888887654444444445 79999999997 99
Q ss_pred EEEEEEEeCceeEE-EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeE
Q psy2145 255 VYTCRAVNALGQAV-TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAA 333 (808)
Q Consensus 255 ~Y~C~a~n~~g~~~-~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~ 333 (808)
.|+|.|.|..|... ..+.|.|.. +|.+...+....+.+|+.+
T Consensus 79 ~Y~C~a~n~~g~~~s~~~~v~v~~-------------------------------------~p~~~~~~~~~~v~~G~~v 121 (388)
T 2v5m_A 79 VYACLARNQFGSIISRDVHVRAVV-------------------------------------AQYYEADVNKEHVIRGNSA 121 (388)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEC-------------------------------------CCCCCCBCCCEEEETTSCE
T ss_pred eEEEEEEccCCeEEecceEEEEcc-------------------------------------ccccccCccceeeecCCcE
Confidence 99999999999753 456666543 4455555667788999999
Q ss_pred EEEEEEeecCCC---ccEEEEEECCEeccC-----CCcEEEEeeCcEEEEEEccCCCCCC-eEEEEEEEcCCcceE-EE-
Q psy2145 334 HFEARLIPVGDS---KLKVTWLRNGVPIQA-----SNRVSTMHDFGYVALNFKYTYPEDS-GTYTCRAVNELGEAV-TS- 402 (808)
Q Consensus 334 ~l~C~~~~~g~p---~~~v~W~~~g~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~d~-G~Y~C~a~n~~g~~~-~~- 402 (808)
.|.|.+ .+.+ .+.+.|+++|..+.. ..++.+..++ .|.|.++..+|+ |.|+|.|.|..+... .+
T Consensus 122 ~l~C~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~ 196 (388)
T 2v5m_A 122 VIKCLI--PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 196 (388)
T ss_dssp EECCBC--CTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTS---CEEESSCCGGGGGCCEEEEEEETTTCCEEECS
T ss_pred EEEEEC--cCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCC---cEEEecCCccccCeeEEEEeccCCCCceeecc
Confidence 999998 5543 389999999977643 3455444333 699999999999 999999999865432 22
Q ss_pred --EEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhh
Q psy2145 403 --STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480 (808)
Q Consensus 403 --~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (808)
..|.|..+....
T Consensus 197 ~~~~l~v~~~~~~~------------------------------------------------------------------ 210 (388)
T 2v5m_A 197 TKGRLVITEPISSS------------------------------------------------------------------ 210 (388)
T ss_dssp SCBCEEEECCCSCE------------------------------------------------------------------
T ss_pred ccceEEEecCCcCC------------------------------------------------------------------
Confidence 234444321000
Q ss_pred hcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEec------CCCCCeE
Q psy2145 481 IRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL------EDSSRIT 554 (808)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l------~~~~~~~ 554 (808)
+|.+.........+.+|+.+.|.|.+ .|.|.+.|.|+|++..+ ....++.
T Consensus 211 ----------------------~p~~~~~~~~~~~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~ 266 (388)
T 2v5m_A 211 ----------------------APRTPALVQKPLELMVAHTISLLCPA--QGFPAPSFRWYKFIEGTTRKQAVVLNDRVK 266 (388)
T ss_dssp ----------------------EEECCSSCCCCEEEETTSCEEECCCC--EEESCCEEEEEEECTTSSCEEECCCSSSEE
T ss_pred ----------------------CCcCccccCCceEEeeCCcEEEEEEC--CCCCCCEEEEEecCCCCcccccccccCcee
Confidence 01111111111246789999999998 78999999999985432 2334443
Q ss_pred EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccC
Q psy2145 555 TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634 (808)
Q Consensus 555 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~ 634 (808)
. ..+ .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..++.
T Consensus 267 ~--~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~--------------------------------- 309 (388)
T 2v5m_A 267 Q--VSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS--------------------------------- 309 (388)
T ss_dssp E--ETT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE---------------------------------
T ss_pred c--ccC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCc---------------------------------
Confidence 2 233 799999999999999999999999999999999987533
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||..|..+. .+|.|.++..+|+|.|+|.|.
T Consensus 310 ---~~~~~~-~~~v~~g~~~~l~C~~--~g~p~p~i~W~~~g~~i~~~~----------~~L~i~~v~~~d~G~Y~C~a~ 373 (388)
T 2v5m_A 310 ---AKIDPP-TQTVDFGRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVR 373 (388)
T ss_dssp ---EEEESS-EEEECTTSCEEEEEEE--EEECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEE
T ss_pred ---cccCCC-cEEecCCCCEEEEEEe--ccccCCeEEEEECCEECccCC----------CEEEEecCChhhCEEEEEEEE
Confidence 222222 3468899999999999 799999999999999997643 279999999999999999999
Q ss_pred eCCcceEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKV 728 (808)
Q Consensus 715 N~~G~~~~s~~l~V 728 (808)
|.+|.++.++.|.|
T Consensus 374 N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 374 NDRESAEASAELKL 387 (388)
T ss_dssp CSSCEEEEEEEEEE
T ss_pred cCCCcEEEEEEEEe
Confidence 99999999999987
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=396.72 Aligned_cols=374 Identities=23% Similarity=0.366 Sum_probs=282.5
Q ss_pred CCCCeEEee-cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC--CceEEEecCceEEEEEc----cCCCCCc
Q psy2145 181 TQAPIFTTS-LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG--SRFTETNNFGFVALDIM----QCLPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~-~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~----~~~~~D~ 253 (808)
..+|.|... +.+..+.+|++++|.|.+ .+.|.+.|.|+|||..+... .++......+ +|.|. +++.+|+
T Consensus 14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~--~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~l~i~~~~~~~~~~D~ 89 (404)
T 3p3y_A 14 TQPPTITKQSAKDHIVDPRDNILIECEA--KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG--TLVIDFRSGGRPEEYE 89 (404)
T ss_dssp CCCCCEEEECCTTCEECSSSCCCCCEEE--CCSSCCEEEEEETTEECCGGGCSSCBCCSSSC--CCBCCCTTTCCTTSSC
T ss_pred cCCCcccccCCccEEEcCCCCEEEEEEe--cCCCCCeEEEEECCEEeeeecCCcceEecCCc--eEEEEeccCCCCccCC
Confidence 568888764 677889999999999999 67899999999999987543 3333333334 45554 8889999
Q ss_pred EEEEEEEEeCceeEE-EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCe
Q psy2145 254 GVYTCRAVNALGQAV-TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQA 332 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~-~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~ 332 (808)
|.|+|.|.|..|... ..+.|.|...+ ......+....+.+|+.
T Consensus 90 G~Y~C~a~n~~g~~~s~~~~l~V~~~p------------------------------------~~~~~~~~~~~v~~G~~ 133 (404)
T 3p3y_A 90 GEYQCFARNKFGTALSNRIRLQVSKSP------------------------------------LWPKENLDPVVVQEGAP 133 (404)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCC------------------------------------CCCCCCCCCEEEETTSC
T ss_pred EEEEEEEEcCCCeEeeeeEEEEEeccC------------------------------------ccccCCCCCeEEccCCc
Confidence 999999999988874 56777776422 11223334578899999
Q ss_pred EEEEEEEeecCCCccEEEEEECCE-eccCCCcEEEEeeCcEEEEEEccCCCCC-CeEEEEEEEcCCcceEEE---EEEEE
Q psy2145 333 AHFEARLIPVGDSKLKVTWLRNGV-PIQASNRVSTMHDFGYVALNFKYTYPED-SGTYTCRAVNELGEAVTS---STLFV 407 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~L~I~~v~~~d-~G~Y~C~a~n~~g~~~~~---~~l~V 407 (808)
+.|.|.+. .+.|.+.+.|++++. .+....++....+ + .|.|.++..+| +|.|+|.|.|..|..... ..+.|
T Consensus 134 v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v 209 (404)
T 3p3y_A 134 LTLQCNPP-PGLPSPVIFWMSSSMEPITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209 (404)
T ss_dssp EEECCCCC-CCSSCCEEEEECTTSCBCCCCSSEEECTT-S--CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEE
T ss_pred EEEEeCCC-CCCCCCeEEEeCCCccccCCCCcEEEcCC-C--cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEE
Confidence 99999873 578899999999874 4444555554433 3 59999999999 599999999998865332 34444
Q ss_pred EecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccC
Q psy2145 408 ESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDT 487 (808)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (808)
...+..
T Consensus 210 ~~~~~~-------------------------------------------------------------------------- 215 (404)
T 3p3y_A 210 LTTRGV-------------------------------------------------------------------------- 215 (404)
T ss_dssp ECCSCC--------------------------------------------------------------------------
T ss_pred eccCCc--------------------------------------------------------------------------
Confidence 322111
Q ss_pred CCCCCCCcCCCCccCCCeeeecCCC--cccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEE
Q psy2145 488 EPHKRPEVDDNATKQRPVFTKPLQN--IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565 (808)
Q Consensus 488 ~~~~~~~~~~~~~~~~P~f~~~~~~--~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~ 565 (808)
...+|.|..+... ...+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+..... ......+ .|.
T Consensus 216 ------------~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~-~~~~~~~--~L~ 278 (404)
T 3p3y_A 216 ------------AERTPSFMYPQGTASSQMVLRGMDLLLECIA--SGVPTPDIAWYKKGGDLPSDKA-KFENFNK--ALR 278 (404)
T ss_dssp ------------CCCCCCBSSSCSSEEEEEEETTSCEEEECCB--CCSSCCEEEEEETTBCCCTTTE-EEEGGGT--EEE
T ss_pred ------------cccCCccccccCCCCCceEecCCCEEEEEEE--CCCCCCcEEEEECCEECCCCcc-cccccCc--eEE
Confidence 1113333333221 1247899999999998 8999999999999999876543 2332233 799
Q ss_pred ECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC
Q psy2145 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645 (808)
Q Consensus 566 I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~ 645 (808)
|.++..+|+|.|+|.|.|..|....++.|.|... |.|...+. .
T Consensus 279 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~------------------------------------p~~~~~~~-~ 321 (404)
T 3p3y_A 279 ITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA------------------------------------PYWLDEPK-N 321 (404)
T ss_dssp ESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE------------------------------------EEEEECCC-C
T ss_pred EccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCC------------------------------------CeeeccCC-c
Confidence 9999999999999999999999999999999875 33433333 3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCc-EEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSR-FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+.++|.|.+ .|.|.|.|.|++||..+..+.. ......++ +|.|.++..+|+|.|+|.|.|.+|....++
T Consensus 322 ~~v~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 397 (404)
T 3p3y_A 322 LILAPGEDGRLVCRA--NGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANA 397 (404)
T ss_dssp EEECTTCCEEEECEE--EEESCCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEE
T ss_pred ceeecCCcEEEEEEc--cccCCCceEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEE
Confidence 568899999999999 7999999999999999986542 22223344 899999999999999999999999999999
Q ss_pred EEEEEe
Q psy2145 725 SLKVKS 730 (808)
Q Consensus 725 ~l~V~~ 730 (808)
.|.|.+
T Consensus 398 ~l~V~d 403 (404)
T 3p3y_A 398 FVSVLD 403 (404)
T ss_dssp EEEEC-
T ss_pred EEEEEe
Confidence 999853
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=421.60 Aligned_cols=400 Identities=15% Similarity=0.154 Sum_probs=284.6
Q ss_pred ccccccccccceeeeccCCCchhhhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe-CCEEee
Q psy2145 16 YLSSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVT 94 (808)
Q Consensus 16 ~~~~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~-~g~~l~ 94 (808)
+..++.+|.|.|.|.+.| +. .....+.....+.....|..+ .+.+|+.++|.|.+. +.|.+.|.||+ +|..+.
T Consensus 84 I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~~p~~~~~~~~~~-~v~~G~~v~l~C~~~--~~~~~~v~W~~~~g~~l~ 157 (524)
T 2ec8_A 84 TEKAEATNTGKYTCTNKH--GL-SNSIYVFVRDPAKLFLVDRSL-YGKEDNDTLVRCPLT--DPEVTNYSLKGCQGKPLP 157 (524)
T ss_dssp ESSCCSTTCEEEEEEETT--SC-EEEEEEECCCSSCSBCCCCCC-CEETTSCEEECCCBS--CCCCSCEEEECSSSCCCC
T ss_pred EcccchhhCEEEEEeecC--Cc-ceEEEEEECCCCcccccccce-EEEcCCeEEEECcCC--CCccceEEEEccCCcCcC
Confidence 556778999999999998 21 111112211222233556666 889999999999998 45668999998 899998
Q ss_pred ccCcEEEEeeCCeEEEEEcccCcCCCe-eEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeecccccccc
Q psy2145 95 IGHRFRPIHDFGYVALDIIDTIPEDSG-TYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQR 172 (808)
Q Consensus 95 ~~~r~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (808)
.+.++....++ .|.|.+++.+|+| .|+|.|.|..|...+ .+.|.|...
T Consensus 158 ~~~~~~~~~~~---~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~--------------------------- 207 (524)
T 2ec8_A 158 KDLRFIPDPKA---GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA--------------------------- 207 (524)
T ss_dssp SSCEEEEETTT---EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECC---------------------------
T ss_pred CCCceeECCCc---cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeC---------------------------
Confidence 88777755433 6999999999999 999999998776533 667766421
Q ss_pred ccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeE-EEEeeCCEEc--cCCCceEEEe---cCceEEEEEc
Q psy2145 173 GEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMK-VEWFHNNVPI--KSGSRFTETN---NFGFVALDIM 246 (808)
Q Consensus 173 ~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~~~g~~l--~~~~~~~~~~---~~~~~~L~I~ 246 (808)
...+|.|...+....+.+|++++|.|.+. +.|.+. |.|+++|..+ ....+..... ..+..+|.|.
T Consensus 208 -------~~~~p~i~~~~~~~~v~~G~~v~L~C~~~--g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 278 (524)
T 2ec8_A 208 -------FKAVPVVSVSKASYLLREGEEFTVTCTIK--DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTIS 278 (524)
T ss_dssp -------CCSCCEEECSCSEEEEETTSCEEEEEEEE--ESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEES
T ss_pred -------CCCCCcEEecCCcceEEcCCcEEEEEEEe--cCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEEC
Confidence 14688898888888999999999999995 666665 9999999883 3332222221 1234589999
Q ss_pred cCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeecc---CCC
Q psy2145 247 QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ---PMR 323 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~---~~~ 323 (808)
++..+|+|.|+|.|.|..|....++.|.|..+| .+.. .+.
T Consensus 279 ~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p-------------------------------------~~~~~~~~~~ 321 (524)
T 2ec8_A 279 SARVNDSGVFMCYANNTFGSANVTTTLEVVDKG-------------------------------------FINIFPMINT 321 (524)
T ss_dssp SCCTTTCEEEEEEEECSSCEEEEEEEEEEESSC-------------------------------------EEEEEESSCS
T ss_pred CCCHHHCEEEEEEEEecCCceEEEEEEEEeccC-------------------------------------ceEeecCCCc
Confidence 999999999999999999999889999987643 3322 234
Q ss_pred ceEeecCCeEEEEEEEeecCCCccE-EEEEECCEeccCCC-cEEEEeeC----cEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLK-VTWLRNGVPIQASN-RVSTMHDF----GYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~-~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
...+.+|+.+.|.|.+ .|.|.+. |+|+++|.++.... ++....++ ...+|.|.++..+|+|.|+|.|.|..|
T Consensus 322 ~~~v~~G~~v~l~C~~--~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g 399 (524)
T 2ec8_A 322 TVFVNDGENVDLIVEY--EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399 (524)
T ss_dssp EEEECTTCCEEEEEEE--EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred eEEEcCCCcEEEEEEE--eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCc
Confidence 5788999999999998 7889988 99999999988765 44433333 356899999999999999999999999
Q ss_pred ceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCch
Q psy2145 398 EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKG 477 (808)
Q Consensus 398 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (808)
....++.|.|..+|.+.
T Consensus 400 ~~~~~~~l~V~~~P~i~--------------------------------------------------------------- 416 (524)
T 2ec8_A 400 NAAIAFNVYVNTKPEIL--------------------------------------------------------------- 416 (524)
T ss_dssp EEEEEEEEEECEEEEEE---------------------------------------------------------------
T ss_pred eEEEEEEEEEecCCeEe---------------------------------------------------------------
Confidence 99888999887654322
Q ss_pred hhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC--------
Q psy2145 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED-------- 549 (808)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~-------- 549 (808)
... .+.+| .|.|.+ .|.|.|.|+|+|+|..+..
T Consensus 417 ------------------------------~~~----~~~~g---~l~C~~--~g~P~p~i~W~~~~~~~~~~~~~~~~~ 457 (524)
T 2ec8_A 417 ------------------------------TYD----RLVNG---MLQCVA--AGFPEPTIDWYFCPGTEQRCSASVLPV 457 (524)
T ss_dssp ------------------------------EEE----CCSSS---CEEEEE--EEESCCEEECCCC----------CCCC
T ss_pred ------------------------------ecc----cCcCc---EEEEEE--EeecCCEEEEEECCCcccccccccCCC
Confidence 111 13456 999999 7999999999999876621
Q ss_pred CCC---eEEEeeCcEEE-EEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 550 SSR---ITTKHDFGYVA-MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 550 ~~~---~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
+.+ +.....+.... +.|.....+|+|.|+|.|.|..|....++.|.|...+.
T Consensus 458 ~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~ 513 (524)
T 2ec8_A 458 DVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513 (524)
T ss_dssp CCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-----
T ss_pred CceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCH
Confidence 111 11122222111 22444456999999999999999999999999987543
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=399.13 Aligned_cols=376 Identities=19% Similarity=0.290 Sum_probs=281.4
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC-ceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS-RFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+.++.+.+|++++|.|.+.+ +.|.+.|.|+|+|..+.... ++......+ +|.|.+++.+|+|.|+|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~ 80 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQCF 80 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTTTEEECTTSC--CEEESSCCGGGCEEEEEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEec-CCCCceEEEEECCcCcccccceEEEecCCc--eEEEecCCCCCCcEEEEE
Confidence 56899999999999999999999999952 38899999999999987665 333333333 799999999999999999
Q ss_pred EEeCceeEEE-EEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 260 AVNALGQAVT-SGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 260 a~n~~g~~~~-~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
|.|..|...+ .+.|.|...+ .|.+ .+....+.+|+.+.|.|.
T Consensus 81 a~n~~g~~~s~~~~l~v~~~~-----------------------------------~p~~--~~~~~~~~~G~~v~l~C~ 123 (395)
T 1bih_A 81 AETPAGVASSRVISFRKTYLI-----------------------------------ASPA--KTHEKTPIEGRPFQLDCV 123 (395)
T ss_dssp EEETTEEEECCCEEEEEEEEE-----------------------------------CCCC--EEEEECCBTTEEEEECCC
T ss_pred EEeCCCeEEeEEEEEEEEEee-----------------------------------cCCc--CCcceeeeeCCcEEEEec
Confidence 9999887653 3566654311 2222 223556789999999998
Q ss_pred EeecCCCccEEEEEECC---EeccC----CCcEEEEeeCcEEEEEEccCCCCCCe---EEEEEEEcCCcceEEEEEEEEE
Q psy2145 339 LIPVGDSKLKVTWLRNG---VPIQA----SNRVSTMHDFGYVALNFKYTYPEDSG---TYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g---~~l~~----~~~~~~~~~~~~~~L~I~~v~~~d~G---~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
+. .+.|.+.|.|+++| .+... ..++....++ .|.|.++..+|+| .|+|.|.|..|.........+.
T Consensus 124 ~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~ 199 (395)
T 1bih_A 124 LP-NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199 (395)
T ss_dssp CC-EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEE
T ss_pred CC-CCCCCCeEEEEecCCCcCcccccccccccEEEcCCC---cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEe
Confidence 52 57888999999986 22221 3455544443 6999999999999 9999999999876543222211
Q ss_pred ecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCC
Q psy2145 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTE 488 (808)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (808)
...... .
T Consensus 200 ~~~~~~--------------------------------~----------------------------------------- 206 (395)
T 1bih_A 200 KGVTKD--------------------------------N----------------------------------------- 206 (395)
T ss_dssp CCCBCC--------------------------------S-----------------------------------------
T ss_pred cccccc--------------------------------c-----------------------------------------
Confidence 100000 0
Q ss_pred CCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE--eeCcEEEEEE
Q psy2145 489 PHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK--HDFGYVAMDL 566 (808)
Q Consensus 489 ~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~--~~~~~~~L~I 566 (808)
.......+|.|. +.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+.......+. .......|.|
T Consensus 207 -------~~~~~~~~p~~~--~~~~-~~~~G~~v~l~C~~--~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i 274 (395)
T 1bih_A 207 -------SGYKGEPVPQYV--SKDM-MAKAGDVTMIYCMY--GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLF 274 (395)
T ss_dssp -------SCCCCCCEEEEE--CCSE-EEETTSCEEEEEEE--ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEE
T ss_pred -------ccccCCcCceec--CCce-EEECCCcEEEEEEe--ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEE
Confidence 000001133341 1222 58899999999999 79999999999999998765432222 1122237999
Q ss_pred CCCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC
Q psy2145 567 SHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645 (808)
Q Consensus 567 ~~v~~~D~G~Y~C~a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~ 645 (808)
.++..+|+|.|+|.|.|..|.... ++.|.|..+ |.|...+...
T Consensus 275 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~------------------------------------P~~~~~~~~~ 318 (395)
T 1bih_A 275 KTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA------------------------------------PKYEQKPEKV 318 (395)
T ss_dssp SSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEE------------------------------------EEEEECCCSE
T ss_pred ccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcC------------------------------------CccccCCCcc
Confidence 999999999999999999999766 889999865 4444444333
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.+.|.|.+ .|.|.|.|.|+|||.+|..+ ++.+. ++ +|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 319 ~~~~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 391 (395)
T 1bih_A 319 IVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391 (395)
T ss_dssp EEECTTSCEEEECEE--EEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred eEecCCCeEEEEEEE--CcccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence 568899999999999 79999999999999999765 66553 33 8999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 392 l~V 394 (395)
T 1bih_A 392 VQV 394 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=392.77 Aligned_cols=389 Identities=14% Similarity=0.164 Sum_probs=241.0
Q ss_pred cccccceeeeccCCCchhhhhh-hccC----------Cc-----cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceE
Q psy2145 21 KETSYHWQNVPVPEWSKEQENA-KKKK----------NF-----IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKV 84 (808)
Q Consensus 21 ~ed~g~y~c~~~~~~~~~~~~~-~~~~----------~~-----~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v 84 (808)
.+|.|.|.|...+....+.+.. ...+ .. ....+..|..+ .|.+|+++.|.|.+. +.|.+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v-~V~~G~~v~L~C~v~--g~P~p~i 80 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAV-EVDVSASITLQVLVD--APGNISC 80 (423)
T ss_dssp ----------------------------------------------------CEE-EECSSCCEEEEEECS--CCSSCEE
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccE-EEecCCcEEEEEEEE--cCCCCeE
Confidence 4688999999977744442211 1111 00 12345566677 899999999999999 5788999
Q ss_pred EEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeee
Q psy2145 85 EWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYL 164 (808)
Q Consensus 85 ~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~ 164 (808)
.|++++..+....++. ....+..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus 81 ~W~~~~~~l~~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~------------------- 140 (423)
T 3qs7_E 81 LWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT------------------- 140 (423)
T ss_dssp EEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC---------------------
T ss_pred EEEECCCccCccceec-cccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecC-------------------
Confidence 9999998876543322 12223457999999999999999999999998888888888532
Q ss_pred ccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEE
Q psy2145 165 EDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALD 244 (808)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~ 244 (808)
|.+. ......+..|+.+.|.|.+ .|.|.|.|+|+|++..+...... . ..+ .+.
T Consensus 141 -------------------p~~~-~~~p~~~~~~~~~~L~C~a--~G~P~P~i~W~k~~~~~~~~~~~-~--~~~--~~~ 193 (423)
T 3qs7_E 141 -------------------LLYT-LRRPYFRKMENQDALVCIS--ESVPEPIVEWVLCDSQGESCKEE-S--PAV--VKK 193 (423)
T ss_dssp ----------------------C-EEEEEEEECSSSSCEEEEE--EESSCCEEEEEEC----------------C--EEE
T ss_pred -------------------cccc-ccCCcEeccCCceEEEEEE--eeecCCeEEEEECCCCCcccccc-c--ccc--ccc
Confidence 2221 1112234468888999999 58899999999998865321100 0 000 011
Q ss_pred Ecc-CCCCCcEEEEEEEEeCceeEEEE-EEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCC
Q psy2145 245 IMQ-CLPEDSGVYTCRAVNALGQAVTS-GNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM 322 (808)
Q Consensus 245 I~~-~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~ 322 (808)
... +...|+|.|+|.|.|..|..... +.|.|.. +|.+ ++
T Consensus 194 ~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------------------------------------~p~~--~~ 234 (423)
T 3qs7_E 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------------------------------------TPQT--TL 234 (423)
T ss_dssp CCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS-------------------------------------CCCS--ST
T ss_pred cceEEecccCeEEEEEEEcCCCCcceeeEEEEEec-------------------------------------CCcc--CC
Confidence 111 15789999999999999976552 4555532 2222 33
Q ss_pred CceEeecCCeEEEEEEEeecC-CCccEEEEEECCEeccCCCcEEEE--e----eCcEEEEEEccCCCCCCeEEEEEEEcC
Q psy2145 323 RDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTM--H----DFGYVALNFKYTYPEDSGTYTCRAVNE 395 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~~~--~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 395 (808)
....+.+|+.+.|.|.+ .| .|.+.|+|+|+|..+.....+... . .....+|.|.++..+|+|.|+|.|.|.
T Consensus 235 ~~~~v~~G~~v~L~C~~--~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 312 (423)
T 3qs7_E 235 PQLFLKVGEPLWIRCKA--VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312 (423)
T ss_dssp TEEEEETTSCEEEEEEE--EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred CceEEeCCCeEEEEEEE--EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence 46778999999999999 56 677999999999988665332111 0 112237999999999999999999997
Q ss_pred CcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCC
Q psy2145 396 LGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHP 475 (808)
Q Consensus 396 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (808)
...++.|.|..++.+...
T Consensus 313 ---~~~~~~L~V~~~p~i~~~----------------------------------------------------------- 330 (423)
T 3qs7_E 313 ---PSQSALVTIVEKGFINAT----------------------------------------------------------- 330 (423)
T ss_dssp ---EEEEEEEEEESSCEEEEC-----------------------------------------------------------
T ss_pred ---CCceEEEEEEeCCcceEc-----------------------------------------------------------
Confidence 666788888755432210
Q ss_pred chhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE
Q psy2145 476 KGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT 555 (808)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~ 555 (808)
+......+.+|+.+.|.|.+ .|.|.|.|+|+|||..|..+.+..
T Consensus 331 ---------------------------------~~~~~~~v~~G~~v~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~- 374 (423)
T 3qs7_E 331 ---------------------------------NSSEDYEIDQYEEFCFSVRF--KAYPQIRCTWTFSRKSFPCEQKGL- 374 (423)
T ss_dssp ------------------------------------CEECCCTTCCCCEEEEE--EEESCCEEEEEETTEEEECBCCBC-
T ss_pred ---------------------------------CCCccEEecCCCeEEEEEEE--EEcCCCeEEEEECCEECCCccccc-
Confidence 00011257889999999999 799999999999999997653110
Q ss_pred EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 556 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
..+. .+.+.....+|+|.|+|.|.|..|.++.++.|.|...|.
T Consensus 375 --~~~~-~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~ 417 (423)
T 3qs7_E 375 --DNGY-SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK 417 (423)
T ss_dssp --SSSS-EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------
T ss_pred --cCCc-EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCc
Confidence 0111 232355677999999999999999999999999998754
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=386.54 Aligned_cols=363 Identities=21% Similarity=0.364 Sum_probs=275.8
Q ss_pred cceeecCCCCcccc---CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEcccCc-CCCee
Q psy2145 49 IYYTVTKPKSIENL---RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDTIP-EDSGT 122 (808)
Q Consensus 49 ~~~~~~~p~~~~~v---~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~~~~~-~D~G~ 122 (808)
.|.+...|.+. .+ .+|+.++|.|.+.+ .|.+.|.|+|+|..|..+ .++.. .++ +|.|.++.. +|+|.
T Consensus 4 ~P~~~~~p~~~-~~~~~~~g~~v~l~C~~~g--~p~~~v~W~k~g~~~~~~~~~~~~~--~~~--~L~i~~~~~~~D~G~ 76 (382)
T 1cs6_A 4 GPVFEEQPAHT-LFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRL--VAG--DLVISNPVKAKDAGS 76 (382)
T ss_dssp EEEEEECCCCE-EEETTCSCCEEEECCEEEE--ESCCEEEEEETTEECCCSTTSSEEE--ETT--EEEEESCCHHHHCEE
T ss_pred CCEEEECCCcE-EEecCCCCCcEEEEEEecC--CCCCEEEEEECCEECCcCCCccEEe--eCC--eEEEecccccccCEE
Confidence 46677788876 44 79999999999984 688899999999998764 45543 333 699999997 99999
Q ss_pred EEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeE
Q psy2145 123 YTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRA 201 (808)
Q Consensus 123 Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v 201 (808)
|+|.|.|..|...+ .+.|.|...+. .....+....+.+|+++
T Consensus 77 Y~C~a~n~~g~~~s~~~~l~v~~~~~-------------------------------------~~~~~~~~~~v~~G~~v 119 (382)
T 1cs6_A 77 YQCVATNARGTVVSREASLRFGFLQE-------------------------------------FSAEERDPVKITEGWGV 119 (382)
T ss_dssp EEEEEEETTEEEECCCEEEEEEEECC-------------------------------------CCSSCCCCEEEETTSCE
T ss_pred EEEEEEcCCcEEEecceEEEeecccc-------------------------------------ccccCCCceEEecCCcE
Confidence 99999999886533 46666642211 01112446778999999
Q ss_pred EEEEEEeecCCCCeEEEEeeCCEEcc--CCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE-----EEEEE
Q psy2145 202 HFECRLIPVSDNTMKVEWFHNNVPIK--SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-----SGNLL 274 (808)
Q Consensus 202 ~L~C~~~~~~~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-----~~~l~ 274 (808)
+|.|.+. .+.|.+.+.|++++.++. ...+.......+ +|.|.+++.+|+|.|+|.|.|..|.... .+.|.
T Consensus 120 ~l~C~~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~ 196 (382)
T 1cs6_A 120 MFTCSPP-PHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196 (382)
T ss_dssp EECCCCC-SEESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEE
T ss_pred EEEeCCC-CCCCCcEEEEEECCCccccccCceEEEecCce--EEEEEeeCcccCeeEEEEEEEccccccceeEccceeec
Confidence 9999863 356788999999988753 333443333333 7999999999999999999997643222 24455
Q ss_pred EeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeecc-CCCceEeecCCeEEEEEEEeecCCCccEEEEEE
Q psy2145 275 VHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ-PMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR 353 (808)
Q Consensus 275 V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~ 353 (808)
|.... ....+|.+.. .+....+.+|+.+.|.|.+ .|.|.+.+.|++
T Consensus 197 v~~~~-------------------------------~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~--~g~p~~~i~W~~ 243 (382)
T 1cs6_A 197 LAAED-------------------------------ARQYAPSIKAKFPADTYALTGQMVTLECFA--FGNPVPQIKWRK 243 (382)
T ss_dssp EESCC-------------------------------CCCEEEEEEECCCSEEEEETTCCEEEECEE--EEESCCEEEEEE
T ss_pred cchhh-------------------------------cccCCCceeccCCCceEEeCCCeEEEEEEE--ccCCCCEEEEEE
Confidence 43210 0112444443 3456788999999999998 788999999999
Q ss_pred CCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccc
Q psy2145 354 NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433 (808)
Q Consensus 354 ~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (808)
++..+... ..... ..|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 244 ~~~~~~~~----~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~--------------------- 296 (382)
T 1cs6_A 244 LDGSQTSK----WLSSE--PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD--------------------- 296 (382)
T ss_dssp CCSCCSCC----CSBSS--SEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE---------------------
T ss_pred CCcccccE----EecCC--cEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCC---------------------
Confidence 98776541 11122 2799999999999999999999999988888888876432
Q ss_pred ccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCc
Q psy2145 434 RFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNI 513 (808)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~ 513 (808)
|...+.+.
T Consensus 297 ------------------------------------------------------------------------~~~~~~~~ 304 (382)
T 1cs6_A 297 ------------------------------------------------------------------------WLDVITDT 304 (382)
T ss_dssp ------------------------------------------------------------------------EEECCCCE
T ss_pred ------------------------------------------------------------------------cccCCCcc
Confidence 22222222
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..+.++.+. ++ .|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 305 -~~~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 377 (382)
T 1cs6_A 305 -EADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAE 377 (382)
T ss_dssp -EEETTCCEEEECEE--EEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred -EEcCCCeEEEEEEe--eeecCCEEEEEECCEECCCCceEEEE--CC--EEEECcCCcccCEEEEEEEEeCCCeEEEEEE
Confidence 57889999999999 79999999999999999988887664 33 7999999999999999999999999999999
Q ss_pred EEEE
Q psy2145 594 MKIK 597 (808)
Q Consensus 594 l~V~ 597 (808)
|.|.
T Consensus 378 l~V~ 381 (382)
T 1cs6_A 378 LTVQ 381 (382)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=388.82 Aligned_cols=365 Identities=21% Similarity=0.337 Sum_probs=274.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEc----ccCcCCCeeEEEEEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDII----DTIPEDSGTYTCRAV 128 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~----~~~~~D~G~Y~C~a~ 128 (808)
.+.++ .+.+|+.++|.|.+. +.|.+.|.|+|+|..+... .++......+ +|.|. +++.+|+|.|+|.|.
T Consensus 23 ~~~~~-~v~~G~~v~l~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~l~i~~~~~~~~~~D~G~Y~C~a~ 97 (404)
T 3p3y_A 23 SAKDH-IVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG--TLVIDFRSGGRPEEYEGEYQCFAR 97 (404)
T ss_dssp CCTTC-EECSSSCCCCCEEEC--CSSCCEEEEEETTEECCGGGCSSCBCCSSSC--CCBCCCTTTCCTTSSCEEEEEEEE
T ss_pred CCccE-EEcCCCCEEEEEEec--CCCCCeEEEEECCEEeeeecCCcceEecCCc--eEEEEeccCCCCccCCEEEEEEEE
Confidence 45666 899999999999998 5788899999999988654 3333333333 45554 889999999999999
Q ss_pred ecCcceE-EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEE
Q psy2145 129 NLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL 207 (808)
Q Consensus 129 n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~ 207 (808)
|..|... ..+.|.|...+ ..+...+....+.+|++++|.|.+
T Consensus 98 n~~g~~~s~~~~l~V~~~p-------------------------------------~~~~~~~~~~~v~~G~~v~l~C~~ 140 (404)
T 3p3y_A 98 NKFGTALSNRIRLQVSKSP-------------------------------------LWPKENLDPVVVQEGAPLTLQCNP 140 (404)
T ss_dssp CSSCEEEEEEEEEEECCCC-------------------------------------CCCCCCCCCEEEETTSCEEECCCC
T ss_pred cCCCeEeeeeEEEEEeccC-------------------------------------ccccCCCCCeEEccCCcEEEEeCC
Confidence 9988764 56777775322 111223345778999999999998
Q ss_pred eecCCCCeEEEEeeCCEE-ccCCCceEEEecCceEEEEEccCCCCC-cEEEEEEEEeCceeEEE---EEEEEEeeCCccc
Q psy2145 208 IPVSDNTMKVEWFHNNVP-IKSGSRFTETNNFGFVALDIMQCLPED-SGVYTCRAVNALGQAVT---SGNLLVHSKKSIQ 282 (808)
Q Consensus 208 ~~~~~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D-~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~i~ 282 (808)
. .+.|.+.+.|++++.. +....++....+ + +|.|.++..+| +|.|+|.|.|..|.... ...|.|...+.+
T Consensus 141 ~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~- 215 (404)
T 3p3y_A 141 P-PGLPSPVIFWMSSSMEPITQDKRVSQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV- 215 (404)
T ss_dssp C-CCSSCCEEEEECTTSCBCCCCSSEEECTT-S--CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCC-
T ss_pred C-CCCCCCeEEEeCCCccccCCCCcEEEcCC-C--cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCc-
Confidence 4 4788899999998754 444455544333 3 69999999999 59999999998775432 245555432211
Q ss_pred ccccccchhhhhhhhhccccccccccccccCCCCeeccCC---CceEeecCCeEEEEEEEeecCCCccEEEEEECCEecc
Q psy2145 283 TETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM---RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQ 359 (808)
Q Consensus 283 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~ 359 (808)
...+|.+..+. ....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+.
T Consensus 216 -----------------------------~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~ 264 (404)
T 3p3y_A 216 -----------------------------AERTPSFMYPQGTASSQMVLRGMDLLLECIA--SGVPTPDIAWYKKGGDLP 264 (404)
T ss_dssp -----------------------------CCCCCCBSSSCSSEEEEEEETTSCEEEECCB--CCSSCCEEEEEETTBCCC
T ss_pred -----------------------------cccCCccccccCCCCCceEecCCCEEEEEEE--CCCCCCcEEEEECCEECC
Confidence 12345554443 24568899999999998 799999999999999987
Q ss_pred CCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhcccccccccccc
Q psy2145 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKE 439 (808)
Q Consensus 360 ~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (808)
..... ....++ +|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 265 ~~~~~-~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~--------------------------- 314 (404)
T 3p3y_A 265 SDKAK-FENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY--------------------------- 314 (404)
T ss_dssp TTTEE-EEGGGT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE---------------------------
T ss_pred CCccc-ccccCc--eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCe---------------------------
Confidence 66542 222223 799999999999999999999999988888888876432
Q ss_pred ceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCC
Q psy2145 440 EEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEG 519 (808)
Q Consensus 440 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G 519 (808)
|...+.+. .+.+|
T Consensus 315 ------------------------------------------------------------------~~~~~~~~-~v~~g 327 (404)
T 3p3y_A 315 ------------------------------------------------------------------WLDEPKNL-ILAPG 327 (404)
T ss_dssp ------------------------------------------------------------------EEECCCCE-EECTT
T ss_pred ------------------------------------------------------------------eeccCCcc-eeecC
Confidence 22222232 57889
Q ss_pred CceEEEEEEeeCCCCCcEEEEEECCEecCCCCC-eEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 520 KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR-ITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 520 ~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+.+.|.|.+ .|.|.+.|.|+|||..+..... ......++ +|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 328 ~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 328 EDGRLVCRA--NGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CCEEEECEE--EEESCCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CcEEEEEEc--cccCCCceEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 999999999 7899999999999999976542 12222334 799999999999999999999999999999998863
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=399.36 Aligned_cols=377 Identities=15% Similarity=0.181 Sum_probs=264.9
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
.+.+.+|++++|.|.+ .+.|...+.|++++..+.....+.. .+.+.++|.|.+++.+|+|.|+|.|.|..|......
T Consensus 57 ~~~v~~g~~~~L~c~~--~~~~~~~~~W~~~~~~l~~~~~~~~-~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~ 133 (527)
T 3qs9_E 57 AVEVDVSASITLQVLV--DAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (527)
T ss_dssp EEEECSSCCEEEEEEC--SCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred eEEEeccccEEEEEEE--ecCCceeEEEEecCCccCcccccCC-CcceEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence 7899999999999999 5777899999999998877666643 234567899999999999999999999988777766
Q ss_pred EEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEE
Q psy2145 272 NLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW 351 (808)
Q Consensus 272 ~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W 351 (808)
.|.|.... +...........|+.+.|.|.+ .|.|.|.|+|
T Consensus 134 ~v~v~~~~--------------------------------------~~~~~~p~~~~~~~~~~L~C~a--~G~P~P~i~W 173 (527)
T 3qs9_E 134 TVSIRNTL--------------------------------------LYTLRRPYFRKMENQDALVCIS--ESVPEPIVEW 173 (527)
T ss_dssp EEEEC-------------------------------------------CEEEEEEEECSSSSCEEEEE--EESSCCEEEE
T ss_pred EEEECCce--------------------------------------eeccCCCcEEecCCceEEEEEE--ceecCCeEEE
Confidence 66664210 0011112233557778899998 8999999999
Q ss_pred EECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecccccccccchHHHhhhhccc
Q psy2145 352 LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVESKASLQLDTQNEAALQKIQNLE 430 (808)
Q Consensus 352 ~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 430 (808)
++++.++..... ............+...|+|.|+|.|.|..|...+. +.|.|...+.
T Consensus 174 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~------------------ 231 (527)
T 3qs9_E 174 VLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ------------------ 231 (527)
T ss_dssp EEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCC------------------
T ss_pred EECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCc------------------
Confidence 999877642210 11111223344456899999999999999987664 5566543321
Q ss_pred cccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecC
Q psy2145 431 DTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPL 510 (808)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~ 510 (808)
+ ++
T Consensus 232 ---------------------------------------------------------------------------~--~p 234 (527)
T 3qs9_E 232 ---------------------------------------------------------------------------T--TL 234 (527)
T ss_dssp ---------------------------------------------------------------------------C--SC
T ss_pred ---------------------------------------------------------------------------c--CC
Confidence 1 11
Q ss_pred CCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe------eCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 511 QNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH------DFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 511 ~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
.+. .+.+|+.+.|.|.+. .|.|.+.|+|+|+|..+.....+.... .....+|.|.+++.+|+|.|+|.|.|.
T Consensus 235 ~~~-~v~~G~~v~L~C~~~-~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~ 312 (527)
T 3qs9_E 235 PQL-FLKVGEPLWIRCKAV-HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312 (527)
T ss_dssp CEE-EECTTSCEEEEEEEE-ESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred Cce-EEeCCCeEEEEEEEc-cCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence 122 578999999999993 289999999999999887654332211 112236999999999999999999998
Q ss_pred CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCC
Q psy2145 585 LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG 664 (808)
Q Consensus 585 ~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g 664 (808)
...++.|.|...|.+.+. |. .....+.+|+.+.|.|.+ .|
T Consensus 313 ---~~~~~~L~V~~~p~i~~~------------------------------~~-----~~~~~v~~G~~v~L~C~~--~g 352 (527)
T 3qs9_E 313 ---PSQSALVTIVEKGFINAT------------------------------NS-----SEDYEIDQYEEFCFSVRF--KA 352 (527)
T ss_dssp ---EEEEEEEEEC--CEEECC------------------------------CS-----CCEECCCTTCCCCEEEEE--EE
T ss_pred ---CCceEEEEEEccCccccc------------------------------cC-----cccEEEcCCCeEEEEEEE--Ee
Confidence 667788888765432211 10 112457899999999999 79
Q ss_pred CCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCccccCCChhhH
Q psy2145 665 DPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSESLQPDAW 744 (808)
Q Consensus 665 ~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~~~~~~~~ 744 (808)
.|.|.|.|+|||+.|..+.++.. +..+|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+......
T Consensus 353 ~P~p~i~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~~~~---- 424 (527)
T 3qs9_E 353 YPQIRCTWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASA---- 424 (527)
T ss_dssp ESCCEEEEEETTEEEECBCCBCS----SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEECCCC----
T ss_pred cCCCEEEEEECCEECcCCccccc----CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEeCCC----
Confidence 99999999999999987655322 2237999999999999999999999999999999999999987654321
Q ss_pred HHHHHhhhccCCchh---HHH
Q psy2145 745 KKIQLKEAEMNKPDA---WKK 762 (808)
Q Consensus 745 ~~i~~~~~~~~~~~~---~~~ 762 (808)
.++.|.+...|.. |.+
T Consensus 425 --~~l~C~a~g~P~p~i~W~~ 443 (527)
T 3qs9_E 425 --SQASCFSDGYPLPSWTWKK 443 (527)
T ss_dssp --E---EEEECSSCCEEEEEC
T ss_pred --CEEEEEEEEEcCCeEEEEE
Confidence 1346776666653 754
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=384.06 Aligned_cols=357 Identities=23% Similarity=0.353 Sum_probs=269.0
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe-CCEEeeccCcEEEEeeCCeEEEEEcccCcCC------Ce
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVALDIIDTIPED------SG 121 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~-~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D------~G 121 (808)
.|.++..|.+...+.+|+.++|.|.+. |.|.+.|.|+| ||..+....++.....++ +|.|.+++.+| +|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~G 78 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQ 78 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEE--EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECC--CCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccCc
Confidence 356677787754788999999999998 47888999999 888887655544444444 69999999998 99
Q ss_pred eEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCe
Q psy2145 122 TYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQR 200 (808)
Q Consensus 122 ~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~ 200 (808)
.|+|.|.|..|.. +..+.|.|. .+|.|...+....+.+|+.
T Consensus 79 ~Y~C~a~n~~g~~~s~~~~v~v~--------------------------------------~~p~~~~~~~~~~v~~G~~ 120 (388)
T 2v5m_A 79 VYACLARNQFGSIISRDVHVRAV--------------------------------------VAQYYEADVNKEHVIRGNS 120 (388)
T ss_dssp EEEEEEEETTEEEECCCEEEEEE--------------------------------------CCCCCCCBCCCEEEETTSC
T ss_pred eEEEEEEccCCeEEecceEEEEc--------------------------------------cccccccCccceeeecCCc
Confidence 9999999998864 234555553 2444555666778999999
Q ss_pred EEEEEEEeecCCC---CeEEEEeeCCEEccC-----CCceEEEecCceEEEEEccCCCCCc-EEEEEEEEeCcee-EEEE
Q psy2145 201 AHFECRLIPVSDN---TMKVEWFHNNVPIKS-----GSRFTETNNFGFVALDIMQCLPEDS-GVYTCRAVNALGQ-AVTS 270 (808)
Q Consensus 201 v~L~C~~~~~~~p---~~~v~W~~~g~~l~~-----~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~~g~-~~~~ 270 (808)
++|.|.+. +.+ .+.|.|++++..+.. ..++....+ + +|.|.+++.+|+ |.|+|.|.|..+. ...+
T Consensus 121 v~l~C~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~--~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~ 195 (388)
T 2v5m_A 121 AVIKCLIP--SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS-G--ELHIREVGPEDGYKSYQCRTKHRLTGETRLS 195 (388)
T ss_dssp EEECCBCC--TTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTT-S--CEEESSCCGGGGGCCEEEEEEETTTCCEEEC
T ss_pred EEEEEECc--CCCCCCcceEEEEeCCCcccccccCCCCcEEEccC-C--cEEEecCCccccCeeEEEEeccCCCCceeec
Confidence 99999984 443 489999999887632 334444333 3 799999999999 9999999997543 2222
Q ss_pred ---EEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec-cCCCceEeecCCeEEEEEEEeecCCCc
Q psy2145 271 ---GNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT-QPMRDIHVAENQAAHFEARLIPVGDSK 346 (808)
Q Consensus 271 ---~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~~~l~C~~~~~g~p~ 346 (808)
..|.|..+... .+|.+. .......+.+|+.+.|.|.+ .|.|.
T Consensus 196 ~~~~~l~v~~~~~~--------------------------------~~p~~~~~~~~~~~v~~G~~v~l~C~~--~g~p~ 241 (388)
T 2v5m_A 196 ATKGRLVITEPISS--------------------------------SAPRTPALVQKPLELMVAHTISLLCPA--QGFPA 241 (388)
T ss_dssp SSCBCEEEECCCSC--------------------------------EEEECCSSCCCCEEEETTSCEEECCCC--EEESC
T ss_pred cccceEEEecCCcC--------------------------------CCCcCccccCCceEEeeCCcEEEEEEC--CCCCC
Confidence 35555532100 112221 11234567899999999998 68899
Q ss_pred cEEEEEECCEe------ccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccch
Q psy2145 347 LKVTWLRNGVP------IQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNE 420 (808)
Q Consensus 347 ~~v~W~~~g~~------l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~ 420 (808)
+.|.|++++.. +....++.. ..+ +|.|.++..+|+|.|+|.|.|..|.....+.|.|..++.+.
T Consensus 242 p~v~W~~~~~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~------ 311 (388)
T 2v5m_A 242 PSFRWYKFIEGTTRKQAVVLNDRVKQ--VSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK------ 311 (388)
T ss_dssp CEEEEEEECTTSSCEEECCCSSSEEE--ETT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE------
T ss_pred CEEEEEecCCCCcccccccccCceec--ccC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccc------
Confidence 99999997543 223334432 223 79999999999999999999999998888889888653221
Q ss_pred HHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCc
Q psy2145 421 AALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNAT 500 (808)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (808)
T Consensus 312 -------------------------------------------------------------------------------- 311 (388)
T 2v5m_A 312 -------------------------------------------------------------------------------- 311 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..+... .+.+|+.+.|.|.+ .|.|.+.|+|+|||..+..+. + .|.|.++..+|+|.|+|.
T Consensus 312 -------~~~~~~-~v~~g~~~~l~C~~--~g~p~p~i~W~~~g~~i~~~~--------~--~L~i~~v~~~d~G~Y~C~ 371 (388)
T 2v5m_A 312 -------IDPPTQ-TVDFGRPAVFTCQY--TGNPIKTVSWMKDGKAIGHSE--------S--VLRIESVKKEDKGMYQCF 371 (388)
T ss_dssp -------EESSEE-EECTTSCEEEEEEE--EEECCCEEEEEETTEECSCCS--------S--EEEESSCCGGGCEEEEEE
T ss_pred -------cCCCcE-EecCCCCEEEEEEe--ccccCCeEEEEECCEECccCC--------C--EEEEecCChhhCEEEEEE
Confidence 111111 57899999999999 799999999999999987543 2 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKI 596 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V 596 (808)
|.|..|....++.|.|
T Consensus 372 a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 372 VRNDRESAEASAELKL 387 (388)
T ss_dssp EECSSCEEEEEEEEEE
T ss_pred EEcCCCcEEEEEEEEe
Confidence 9999999999999887
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=387.26 Aligned_cols=374 Identities=22% Similarity=0.312 Sum_probs=276.3
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc-EEEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR-FRPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
.|.+...|.++ .+.+|+.++|.|.+.+ +.|.+.|.|+|+|..+..+.+ +.... ...+|.|.+++.+|+|.|+|.|
T Consensus 6 ~P~~~~~p~~~-~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~a 81 (395)
T 1bih_A 6 YPVLKDQPAEV-LFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRK--DEGSLVFLRPQASDEGHYQCFA 81 (395)
T ss_dssp CCEECCCCSEE-EEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTTTEEECT--TSCCEEESSCCGGGCEEEEEEE
T ss_pred CCEeecCCCce-EEeCCCEEEEEEEEec-CCCCceEEEEECCcCcccccceEEEec--CCceEEEecCCCCCCcEEEEEE
Confidence 45666778887 8999999999999995 478899999999999887653 33322 2337999999999999999999
Q ss_pred EecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEE
Q psy2145 128 VNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECR 206 (808)
Q Consensus 128 ~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~ 206 (808)
.|..|...+ .+.|.|... ..|.+ .+.+..+.+|+.++|.|.
T Consensus 82 ~n~~g~~~s~~~~l~v~~~------------------------------------~~p~~--~~~~~~~~~G~~v~l~C~ 123 (395)
T 1bih_A 82 ETPAGVASSRVISFRKTYL------------------------------------IASPA--KTHEKTPIEGRPFQLDCV 123 (395)
T ss_dssp EETTEEEECCCEEEEEEEE------------------------------------ECCCC--EEEEECCBTTEEEEECCC
T ss_pred EeCCCeEEeEEEEEEEEEe------------------------------------ecCCc--CCcceeeeeCCcEEEEec
Confidence 998887542 355555321 11222 334667889999999999
Q ss_pred EeecCCCCeEEEEeeCC---EEccC----CCceEEEecCceEEEEEccCCCCCcE---EEEEEEEeCceeEEEEEEEEEe
Q psy2145 207 LIPVSDNTMKVEWFHNN---VPIKS----GSRFTETNNFGFVALDIMQCLPEDSG---VYTCRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 207 ~~~~~~p~~~v~W~~~g---~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G---~Y~C~a~n~~g~~~~~~~l~V~ 276 (808)
+. .+.|.+.|.|+++| .+... ..++....+ + +|.|.++..+|+| .|+|.|.|..|.........+.
T Consensus 124 ~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~--~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~ 199 (395)
T 1bih_A 124 LP-NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD-G--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199 (395)
T ss_dssp CC-EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT-S--CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEE
T ss_pred CC-CCCCCCeEEEEecCCCcCcccccccccccEEEcCC-C--cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEe
Confidence 63 36788999999986 22221 344444333 3 6999999999999 9999999988875443322221
Q ss_pred eCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCE
Q psy2145 277 SKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGV 356 (808)
Q Consensus 277 ~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~ 356 (808)
..- ... ........+|.+ .+....+.+|+.+.|.|.+ .|.|.+.+.|+++|.
T Consensus 200 ~~~--~~~----------------------~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~--~g~p~~~i~W~~~g~ 251 (395)
T 1bih_A 200 KGV--TKD----------------------NSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMY--GSNPMGYPNYFKNGK 251 (395)
T ss_dssp CCC--BCC----------------------SSCCCCCCEEEE--ECCSEEEETTSCEEEEEEE--ECSSCCCCEEEETTE
T ss_pred ccc--ccc----------------------cccccCCcCcee--cCCceEEECCCcEEEEEEe--ccCCCCeEEEEECCE
Confidence 100 000 000001123444 2456788999999999999 789999999999999
Q ss_pred eccCCC--cEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecccccccccchHHHhhhhcccccc
Q psy2145 357 PIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVESKASLQLDTQNEAALQKIQNLEDTS 433 (808)
Q Consensus 357 ~l~~~~--~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (808)
.+.... ++..........|.|.++..+|+|.|+|.|.|..|.... ++.|.|..+|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~--------------------- 310 (395)
T 1bih_A 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK--------------------- 310 (395)
T ss_dssp ECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEE---------------------
T ss_pred EcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCc---------------------
Confidence 987643 333222222237999999999999999999999998766 78888886542
Q ss_pred ccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCc
Q psy2145 434 RFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNI 513 (808)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~ 513 (808)
|...+.+.
T Consensus 311 ------------------------------------------------------------------------~~~~~~~~ 318 (395)
T 1bih_A 311 ------------------------------------------------------------------------YEQKPEKV 318 (395)
T ss_dssp ------------------------------------------------------------------------EEECCCSE
T ss_pred ------------------------------------------------------------------------cccCCCcc
Confidence 22222221
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
..+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..+ ++.+. ++ .|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 319 ~~~~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 391 (395)
T 1bih_A 319 IVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391 (395)
T ss_dssp EEECTTSCEEEECEE--EEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred eEecCCCeEEEEEEE--CcccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence 257899999999999 78999999999999999765 55543 33 7999999999999999999999999999999
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 392 l~V 394 (395)
T 1bih_A 392 VQV 394 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=388.20 Aligned_cols=380 Identities=14% Similarity=0.136 Sum_probs=256.3
Q ss_pred ccccccccceeeeccCCCchhhhhhhccCCccce-eecCCCCccccCCCCcEEEEEEEeeCCCCCc---eEEEEeCCEEe
Q psy2145 18 SSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYY-TVTKPKSIENLRERGHAHFECKLEPVTDSNL---KVEWFKNGRPV 93 (808)
Q Consensus 18 ~~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~---~v~W~~~g~~l 93 (808)
.++. |+| |+|.+.+..........+.....+. +...|.+. .+.+|+.++|.|.+.+ .|.+ .|.|||+|..|
T Consensus 56 ~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~-~v~~G~~v~L~C~~~g--~~~~~~~~v~W~k~g~~l 130 (450)
T 1z7z_I 56 NVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPS-WQPVGKNLTLRCQVEG--GAPRANLTVVLLRGEKEL 130 (450)
T ss_dssp EECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCS-EECTTSEEEEEEEEEC--CBCGGGEEEEEEETTEEE
T ss_pred eccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCc-eEeeCCeEEEEEEecC--CCCCcCcEEEEeeCCEEe
Confidence 3344 888 9999965443332222222222232 33456666 7899999999999994 5665 89999999998
Q ss_pred eccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccc
Q psy2145 94 TIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRG 173 (808)
Q Consensus 94 ~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (808)
..+.+.. +....+|.|.++..+|+|.|+|.|.|..|.......+.+.....+.
T Consensus 131 ~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~------------------------ 183 (450)
T 1z7z_I 131 KREPAVG---EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ------------------------ 183 (450)
T ss_dssp EEEECCT---TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECE------------------------
T ss_pred ecccccc---cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCcccee------------------------
Confidence 7554221 3334589999999999999999999998754322222211100000
Q ss_pred cccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCC-C--CeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCC
Q psy2145 174 EYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSD-N--TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP 250 (808)
Q Consensus 174 ~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~-p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~ 250 (808)
.......+|.+... ..+.+|+.++|.|.+. +. | .+.+.|+++|..+.. ++....+.....+.+ +++.
T Consensus 184 --v~~~~~~~p~~~~~---~~v~~G~~v~l~C~~~--g~~P~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~-~v~~ 253 (450)
T 1z7z_I 184 --TFVLPATPPQLVSP---RVLEVDTQGTVVCSLD--GLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASV-SVTA 253 (450)
T ss_dssp --ECCCCSSCCEEECC---SEEETTSEEEEEEEEE--SCTTGGGCEEEEEETTEECCC--EEEEETTEEEEEEEE-ECCG
T ss_pred --eeccCCCCCEecCc---eeEEeCCcEEEEEEee--CCCCCCceEEEEeCCCEeCCc--eEEecCCceeEEEEE-EeEh
Confidence 00001235555432 6788999999999994 55 6 789999999999876 333332221112233 7899
Q ss_pred CCcE--EEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEee
Q psy2145 251 EDSG--VYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVA 328 (808)
Q Consensus 251 ~D~G--~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~ 328 (808)
+|+| .|+|.|.|..|....++.|.|...+ +|.+... ...+.
T Consensus 254 ~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~-----------------------------------~p~i~~~--~~~v~ 296 (450)
T 1z7z_I 254 EDEGTQRLTCAVILGNQSQETLQTVTIYSFP-----------------------------------APNVILT--KPEVS 296 (450)
T ss_dssp GGCEEEEEEEEEEETTEEEEEEEEEEEECCC-----------------------------------CCEEEES--CSEEE
T ss_pred hhCCcEEEEEEEccCCccEEEEEEEEEecCC-----------------------------------CCeEecC--CeeEe
Confidence 9999 9999999999999889999987532 3555432 45789
Q ss_pred cCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc-c---eEEEEE
Q psy2145 329 ENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG-E---AVTSST 404 (808)
Q Consensus 329 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g-~---~~~~~~ 404 (808)
+|+.+.|.|.+ . |.+.++| +|.++... +....|.|..+..+|+|.|+|.|.|..| . ...++.
T Consensus 297 ~G~~v~l~C~~--~--p~p~i~W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~ 362 (450)
T 1z7z_I 297 EGTEVTVKCEA--H--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362 (450)
T ss_dssp TTCEEEEEEEC------------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCcEEEEEec--C--CCCEeEE--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEE
Confidence 99999999997 3 8899999 88877221 1223699999999999999999997665 3 335677
Q ss_pred EEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhccc
Q psy2145 405 LFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKL 484 (808)
Q Consensus 405 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (808)
|.|..+|.+.
T Consensus 363 l~V~~~P~~~---------------------------------------------------------------------- 372 (450)
T 1z7z_I 363 LRVLYGPRLD---------------------------------------------------------------------- 372 (450)
T ss_dssp CEEEEEEECC----------------------------------------------------------------------
T ss_pred EEEecCCcee----------------------------------------------------------------------
Confidence 8887655432
Q ss_pred ccCCCCCCCCcCCCCccCCCeeeecCC-CcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEE
Q psy2145 485 EDTEPHKRPEVDDNATKQRPVFTKPLQ-NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563 (808)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~P~f~~~~~-~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~ 563 (808)
.... ....+.+|+.+.|.|.+ .|.|.|.|+|+|+|..+..... .
T Consensus 373 -----------------------~~~~p~~~~~~~g~~~~l~C~~--~g~P~p~i~W~~~g~~~~~~g~----------~ 417 (450)
T 1z7z_I 373 -----------------------ERDCPGNWTWPENSQQTPMCQA--WGNPLPELKCLKDGTFPLPIGE----------S 417 (450)
T ss_dssp -----------------------STTSCSEEEEETTCEECCCCCC--EEESCCEEEEEETTTEECCTTS----------C
T ss_pred -----------------------eccCCCceeEcCCCeEEEEEec--ccCCCCcEEEEECCcccCCCCC----------e
Confidence 1110 11157889999999999 8999999999999984433221 1
Q ss_pred EEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 564 L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
| +++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 418 ~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 418 V---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp E---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred E---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 2 5788999999999999999999999999975
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=385.54 Aligned_cols=372 Identities=17% Similarity=0.235 Sum_probs=261.2
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--EEcc------------CCCceEEEecCceEEEEEccCCCCCc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPIK------------SGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..|..+.+.+|++++|.|.+ .+.|.+.|.|||++ ..+. ...|+.....++..+|.|.+++.+|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 5 TQPPSASGTPGQRVTISCTG--TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccCCceEEecCCcEEEEEEE--eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence 35667889999999999999 56788999999974 2211 12456655556667899999999999
Q ss_pred EEEEEEEEeCceeE---EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecC
Q psy2145 254 GVYTCRAVNALGQA---VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAEN 330 (808)
Q Consensus 254 G~Y~C~a~n~~g~~---~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G 330 (808)
|.|+|.|.|..|.. ...+.|.|...+ ..+|.+...+....+.+|
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~---------------------------------~~~P~~~~~~~~~~~~~g 129 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQP---------------------------------KANPTVTLFPPSSEELQA 129 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCC---------------------------------CcCCeEEecCCcccccCC
Confidence 99999999987632 245677774321 135666555555566789
Q ss_pred CeEEEEEEEeecCCCc--cEEEEEECCEeccCCCcEEE--EeeCcE----EEEEEccCCCCCCeEEEEEEEcCCcceEEE
Q psy2145 331 QAAHFEARLIPVGDSK--LKVTWLRNGVPIQASNRVST--MHDFGY----VALNFKYTYPEDSGTYTCRAVNELGEAVTS 402 (808)
Q Consensus 331 ~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~~~~~--~~~~~~----~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~ 402 (808)
+.+.|.|.+ .|.|+ +.|+|+|||.++..+.+... ...++. ..|.|.++..+|+|.|+|.|.|..|.....
T Consensus 130 ~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 207 (523)
T 2rcj_C 130 NKATLVCLI--SDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 207 (523)
T ss_pred CceEEEEEe--ccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccc
Confidence 999999999 66654 49999999998876543221 112221 369999999999999999999998865544
Q ss_pred EEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhc
Q psy2145 403 STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIR 482 (808)
Q Consensus 403 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (808)
+.+.+...
T Consensus 208 ~~~~~~~~------------------------------------------------------------------------ 215 (523)
T 2rcj_C 208 VAPTECSA------------------------------------------------------------------------ 215 (523)
T ss_pred eeeeecCC------------------------------------------------------------------------
Confidence 43322100
Q ss_pred ccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCC-CCc-EEEEEECCEecCCCCCeEEEeeCc
Q psy2145 483 KLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD-PTL-KVEWFRNEKPLEDSSRITTKHDFG 560 (808)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~~-~v~W~k~g~~l~~~~~~~~~~~~~ 560 (808)
...+|.+...... ..+.+|+.+.|.|.+ .|. |.+ .|+|+|+|..+...........++
T Consensus 216 -----------------~~~~P~v~~~~~~-~~~~~G~~~~l~C~~--~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g 275 (523)
T 2rcj_C 216 -----------------STKGPSVFPLAPS-SKSTSGGTAALGCLV--KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSG 275 (523)
T ss_pred -----------------CCcCCEEEecCCC-cccccCCceEEEEEE--eceeCCCeEEEEecCCcccceEeCCcEecCCC
Confidence 0112333321111 246789999999999 665 877 899999998764321111112222
Q ss_pred ----EEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC
Q psy2145 561 ----YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636 (808)
Q Consensus 561 ----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P 636 (808)
...|.|.++..+| |.|+|.|.|..|.....+.|.|... |
T Consensus 276 ~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~------------------------------------P 318 (523)
T 2rcj_C 276 LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL------------------------------------P 318 (523)
T ss_pred cEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC------------------------------------c
Confidence 2379999999999 9999999999998877776665432 3
Q ss_pred eEEeecCCCc-cccCCceEEEEEEEeeCCCC----CeEEEEEECCEEccCCCcEEEE-EeCC----EEEEEEccCCCCCc
Q psy2145 637 IFTQLLTGTS-EIMEGQSAHYDCRVVPVGDP----TMRFEWFVNGVELKMGSRFHVQ-HDFG----YVTLDITKCVPADS 706 (808)
Q Consensus 637 ~~~~~~~~~~-~v~~G~~v~l~C~v~~~g~P----~p~i~W~~~g~~l~~~~~~~~~-~~~~----~~~L~I~~v~~~D~ 706 (808)
.+........ .+.+|+.+.|.|.+ .|.| .+.|.|+|||..+..+...... ..++ .+.|.|.++..+|+
T Consensus 319 ~~~~~~p~~~~~v~~g~~~~l~C~~--~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~ 396 (523)
T 2rcj_C 319 SVFLFPPKPKDTLMISRTPEVTCVV--VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDG 396 (523)
T ss_pred eEEecCCCchhhcccCCceEEEEEE--ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCC
Confidence 2222212122 37889999999999 6754 3699999999999766543221 1222 24699999999999
Q ss_pred EEEEEEEEeCCcceEEEEEEE
Q psy2145 707 GVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
|.|+|.|.|..|....+..|.
T Consensus 397 G~Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 397 KEYKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred CeEEEEEeCCCCCCceeEEEE
Confidence 999999999998877666665
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=340.90 Aligned_cols=280 Identities=25% Similarity=0.479 Sum_probs=245.0
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
.||.|...+....+.+|+.+.|.|.+ .|.|.+.|+|+++|..+..+.++.+....+...|.|.++..+|+|.|+|.|.
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 81 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEE--ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEccccceEecCCCcEEEEEEE--EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence 48899888889999999999999999 6889999999999999998888777666677799999999999999999999
Q ss_pred cCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEeccc
Q psy2145 394 NELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473 (808)
Q Consensus 394 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (808)
|..|....++.|.|..+|
T Consensus 82 n~~g~~~~~~~l~V~~~p-------------------------------------------------------------- 99 (284)
T 2rik_A 82 NVAGKDSCSAQLGVQEPP-------------------------------------------------------------- 99 (284)
T ss_dssp ETTEEEEEEEEEEEECCC--------------------------------------------------------------
T ss_pred ECCceEEEEEEEEccCCC--------------------------------------------------------------
Confidence 999998888888887543
Q ss_pred CCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe
Q psy2145 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI 553 (808)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~ 553 (808)
.|...+.....+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....++
T Consensus 100 -------------------------------~~~~~~~~~~~v~~g~~~~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~ 146 (284)
T 2rik_A 100 -------------------------------RFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKF 146 (284)
T ss_dssp -------------------------------EEEECCCSEEEEETTCCEEEEEEE--ESSSCCEEEEEETTEECCCSSSE
T ss_pred -------------------------------cccccCCCceEecCCceEEEEEEE--eeeCCCEEEEEECCEECcCCCcE
Confidence 222222222257899999999999 78999999999999999988888
Q ss_pred EEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCcccc
Q psy2145 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQY 633 (808)
Q Consensus 554 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~ 633 (808)
......+...|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.+
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~------------------------------- 195 (284)
T 2rik_A 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF------------------------------- 195 (284)
T ss_dssp EEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBC-------------------------------
T ss_pred EEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcc-------------------------------
Confidence 8777777779999999999999999999999999999999999875443
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
...+ ....+.+|+.+.|.|.+ .|.|.|.|.|++||..+..+.++.+..++...+|.|.++..+|+|.|+|.|
T Consensus 196 -----~~~~-~~~~~~~g~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 267 (284)
T 2rik_A 196 -----RKKP-HPVETLKGADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267 (284)
T ss_dssp -----CSCC-CCEEECTTCCEEEEEEC--BSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred -----eeCC-CcceecCCCeEEEEEEE--EecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence 2221 12457789999999999 799999999999999999999999998888899999999999999999999
Q ss_pred EeCCcceEEEEEEEEE
Q psy2145 714 INRAGEAVSSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~ 729 (808)
.|.+|..+.++.|.|+
T Consensus 268 ~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 268 SNDVGSYTCVGSITLK 283 (284)
T ss_dssp EETTEEEEEEEEEEEC
T ss_pred EeCCCceeEEEEEEEc
Confidence 9999999999999986
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=330.18 Aligned_cols=280 Identities=25% Similarity=0.482 Sum_probs=244.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..||.|...+.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..+.++......+..+|.|.+++.+|+|.|+|.|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEE--ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEE--EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 468999999999999999999999999 577888999999999998888887776666779999999999999999999
Q ss_pred EeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCC-CceEeecCCeEEEEEEE
Q psy2145 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM-RDIHVAENQAAHFEARL 339 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~~~l~C~~ 339 (808)
.|..|....++.|.|.. +|.+...+ ....+.+|+.+.|.|.+
T Consensus 81 ~n~~g~~~~~~~l~V~~-------------------------------------~p~~~~~~~~~~~v~~g~~~~l~C~~ 123 (284)
T 2rik_A 81 SNVAGKDSCSAQLGVQE-------------------------------------PPRFIKKLEPSRIVKQDEHTRYECKI 123 (284)
T ss_dssp EETTEEEEEEEEEEEEC-------------------------------------CCEEEECCCSEEEEETTCCEEEEEEE
T ss_pred EECCceEEEEEEEEccC-------------------------------------CCcccccCCCceEecCCceEEEEEEE
Confidence 99999988888998875 44444333 34568899999999999
Q ss_pred eecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccc
Q psy2145 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQN 419 (808)
Q Consensus 340 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~ 419 (808)
.|.|.+.+.|+++|..+....++......+...|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+
T Consensus 124 --~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~------ 195 (284)
T 2rik_A 124 --GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF------ 195 (284)
T ss_dssp --ESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBC------
T ss_pred --eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcc------
Confidence 788999999999999999888877776667779999999999999999999999999888888888764322
Q ss_pred hHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCC
Q psy2145 420 EAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNA 499 (808)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (808)
T Consensus 196 -------------------------------------------------------------------------------- 195 (284)
T 2rik_A 196 -------------------------------------------------------------------------------- 195 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
...+... .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|
T Consensus 196 -------~~~~~~~-~~~~g~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 265 (284)
T 2rik_A 196 -------RKKPHPV-ETLKGADVHLECEL--QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265 (284)
T ss_dssp -------CSCCCCE-EECTTCCEEEEEEC--BSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred -------eeCCCcc-eecCCCeEEEEEEE--EecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEE
Confidence 2222222 47789999999999 8999999999999999999999988888877899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIK 597 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~ 597 (808)
.|.|..|..+.++.|.|+
T Consensus 266 ~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 266 KASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEETTEEEEEEEEEEEC
T ss_pred EEEeCCCceeEEEEEEEc
Confidence 999999999999999885
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=370.38 Aligned_cols=373 Identities=18% Similarity=0.230 Sum_probs=258.7
Q ss_pred eEEeecCceeecCCCeEEEEEEEeecCCCC----eEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEc
Q psy2145 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNT----MKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIM 246 (808)
Q Consensus 185 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~----~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~ 246 (808)
.|...|..+.+.+|++++|.|.+ .+.+. +.|.|||+ |..+ ....++.....++..+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRA--SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEec--CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeC
Confidence 35566788899999999999998 56665 48999996 3322 12356666666677799999
Q ss_pred cCCCCCcEEEEEEEEeCceeE-EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCce
Q psy2145 247 QCLPEDSGVYTCRAVNALGQA-VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDI 325 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~ 325 (808)
+++.+|+|.|+|.|.|..|.. ...+.|.|... ..+|.+.......
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~----------------------------------~~~P~v~~~~~~~ 126 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRA----------------------------------DAAPTVSIFPPSS 126 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTCCBCCCEEEEECCC----------------------------------CBCCEEEEECCCH
T ss_pred CCcCcCCeeEEEEEecCCCccccCceeEEecCC----------------------------------CCCCEEEecCCCh
Confidence 999999999999999987643 33466776431 1255555433333
Q ss_pred EeecCCeEEEEEEEeecC-CCcc-EEEEEECCEeccCCCcE--EEEe--eCc---EEEEEEccCCCCCCeEEEEEEEcCC
Q psy2145 326 HVAENQAAHFEARLIPVG-DSKL-KVTWLRNGVPIQASNRV--STMH--DFG---YVALNFKYTYPEDSGTYTCRAVNEL 396 (808)
Q Consensus 326 ~v~~G~~~~l~C~~~~~g-~p~~-~v~W~~~g~~l~~~~~~--~~~~--~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~ 396 (808)
...+|+.+.|.|.+ .| .|.+ .|+|+|||.++..+... .... ++. ...|.|.++..+|+|.|+|.|.|..
T Consensus 127 ~~~~g~~~~l~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 204 (438)
T 1qgc_4 127 EQLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT 204 (438)
T ss_dssp HHHHTTEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETT
T ss_pred hhccCCceEEEEEE--ccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecc
Confidence 34578899999998 44 6766 99999999998765211 1111 111 2479999999999999999999998
Q ss_pred cceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCc
Q psy2145 397 GEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPK 476 (808)
Q Consensus 397 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (808)
|.... .+.+....
T Consensus 205 ~~~~~--~~~~~~~~----------------------------------------------------------------- 217 (438)
T 1qgc_4 205 STSPI--VKSFNRNE----------------------------------------------------------------- 217 (438)
T ss_dssp CSSCE--EEEEETTC-----------------------------------------------------------------
T ss_pred cCCce--eccccccc-----------------------------------------------------------------
Confidence 87532 22222100
Q ss_pred hhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEecC----
Q psy2145 477 GLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKPLE---- 548 (808)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~l~---- 548 (808)
++.+...+... .+.+|+.+.|.|.+ .|.| .+.|.|+|+ |+.+.
T Consensus 218 --------------------------~~~~~~~~~~~-~v~~G~~v~L~C~~--~g~p~~~~~v~W~k~~~g~~~~~~~~ 268 (438)
T 1qgc_4 218 --------------------------CEVMLVESGGG-LVKPGGSLKLSCTA--SGFIFNRCAMSWVRQTPEKRLEWVAT 268 (438)
T ss_dssp ---------------------------CCEEEEECCE-EECTTCCEEEEEEE--ESSCGGGSCEEEEEEETTTEEEEEEE
T ss_pred --------------------------ceeEEecCCce-EEecCCcEEEEEEE--cccccCCcEEEEEECCCCCCcEEEEE
Confidence 00111111122 47899999999999 7888 678999997 54332
Q ss_pred -------------CCCCeEEEee--CcEEEEEECCCCCCCCEEEEEEEEeCCe-----eEEEEEEEEEEecccccccccC
Q psy2145 549 -------------DSSRITTKHD--FGYVAMDLSHVRAEDEGIYICKATNALG-----EAVTTASMKIKTKAGLQLETQH 608 (808)
Q Consensus 549 -------------~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-----~~~~s~~l~V~~~~~i~~~~~~ 608 (808)
...++.+..+ .+...|.|.+++.+|+|.|+|.|.|..| .......|.|...+.
T Consensus 269 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~------- 341 (438)
T 1qgc_4 269 ISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKT------- 341 (438)
T ss_dssp ECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCC-------
T ss_pred EeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCC-------
Confidence 2356666654 3466899999999999999999999554 222345666653211
Q ss_pred cccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCCcEE
Q psy2145 609 PEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGSRFH 686 (808)
Q Consensus 609 p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~ 686 (808)
.+|.+...... ..+.+|+.++|.|.+ .|. |.| .|.|++||..+.......
T Consensus 342 -------------------------~~P~v~~~~~~-~~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~g~~~~~~~~~~ 393 (438)
T 1qgc_4 342 -------------------------TPPSVYPLAPG-SAAAAASMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPA 393 (438)
T ss_dssp -------------------------BCCEEEEECCC-GGGCCSSEEEEEEEE--ESCBSSCCEEEEGGGTCCSSEEECCC
T ss_pred -------------------------CCCeEEEcCcc-cccccCCcEEEEEEe--ccccCCCcEEEEecCCCCCceeecCc
Confidence 23555444333 457789999999999 687 888 999999998876321111
Q ss_pred EEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 687 VQHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 687 ~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
+...+. .+.|.|.++..+| |.|+|.|.|.+|....+..|.
T Consensus 394 ~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 394 VLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp EEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred cccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence 122211 2369999999889 999999999999887776654
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=365.77 Aligned_cols=371 Identities=15% Similarity=0.204 Sum_probs=257.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCC----ceEEEEeC--CEEee------------ccCcEEEEeeCCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSN----LKVEWFKN--GRPVT------------IGHRFRPIHDFGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~----~~v~W~~~--g~~l~------------~~~r~~~~~~~~~~~L~I~~ 114 (808)
...|..+ .+.+|++++|.|.+. +.|. +.|.|||+ |..+. ...|+....+++..+|.|.+
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (438)
T 1qgc_4 5 TQSPASL-AVSLGQRATISCRAS--ESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDP 81 (438)
T ss_dssp EEECSEE-EECTTSCEEEEEEES--SCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESS
T ss_pred EecCCeE-EeeCCCCEEEEEecC--CCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCC
Confidence 4457777 899999999999987 4554 48999996 33221 24678777777788999999
Q ss_pred cCcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCce
Q psy2145 115 TIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNC 193 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 193 (808)
++.+|+|.|+|.|.|..+.. ...+.|.|... ..+|.+...+...
T Consensus 82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~-----------------------------------~~~P~v~~~~~~~ 126 (438)
T 1qgc_4 82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKRA-----------------------------------DAAPTVSIFPPSS 126 (438)
T ss_dssp CCGGGCEEEEEEECSSTTCCBCCCEEEEECCC-----------------------------------CBCCEEEEECCCH
T ss_pred CcCcCCeeEEEEEecCCCccccCceeEEecCC-----------------------------------CCCCEEEecCCCh
Confidence 99999999999999987643 34456666321 3467777655554
Q ss_pred eecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCce--EEE-ecCc----eEEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 194 EIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRF--TET-NNFG----FVALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 194 ~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~--~~~-~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
.+.+|+.++|.|.+.+ +.|.+ .|.|+|||.++..+... ... ..++ ...|.|.++..+|+|.|+|.|.|..|
T Consensus 127 ~~~~g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 205 (438)
T 1qgc_4 127 EQLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 205 (438)
T ss_dssp HHHHTTEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred hhccCCceEEEEEEcc-ccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEeccc
Confidence 5557889999999953 35665 99999999998765211 111 1112 23799999999999999999999887
Q ss_pred eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCC
Q psy2145 266 QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS 345 (808)
Q Consensus 266 ~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p 345 (808)
..... +.+... .++.....+....+.+|+.+.|.|.+ .|.|
T Consensus 206 ~~~~~--~~~~~~-----------------------------------~~~~~~~~~~~~~v~~G~~v~L~C~~--~g~p 246 (438)
T 1qgc_4 206 TSPIV--KSFNRN-----------------------------------ECEVMLVESGGGLVKPGGSLKLSCTA--SGFI 246 (438)
T ss_dssp SSCEE--EEEETT-----------------------------------C-CCEEEEECCEEECTTCCEEEEEEE--ESSC
T ss_pred CCcee--cccccc-----------------------------------cceeEEecCCceEEecCCcEEEEEEE--cccc
Confidence 65332 233210 12222233445678999999999999 6777
Q ss_pred --ccEEEEEEC--CEecc-----------------CCCcEEEEee--CcEEEEEEccCCCCCCeEEEEEEEcCCc-----
Q psy2145 346 --KLKVTWLRN--GVPIQ-----------------ASNRVSTMHD--FGYVALNFKYTYPEDSGTYTCRAVNELG----- 397 (808)
Q Consensus 346 --~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~g----- 397 (808)
.+.|.|+|+ |..+. ...++.+..+ .+..+|.|.++..+|+|.|+|.|.|..|
T Consensus 247 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~ 326 (438)
T 1qgc_4 247 FNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFA 326 (438)
T ss_dssp GGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCC
T ss_pred cCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccce
Confidence 689999996 54332 1356666554 3466899999999999999999999544
Q ss_pred ceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCch
Q psy2145 398 EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKG 477 (808)
Q Consensus 398 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (808)
.....+.|.|...+
T Consensus 327 ~~~~~~~l~V~~~~------------------------------------------------------------------ 340 (438)
T 1qgc_4 327 YWGQGTVVTVSAAK------------------------------------------------------------------ 340 (438)
T ss_dssp SBCCCEEEEECSSC------------------------------------------------------------------
T ss_pred eeCCCEEEEEecCC------------------------------------------------------------------
Confidence 11223455554211
Q ss_pred hhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCC-CCc-EEEEEECCEecCCCCCeEE
Q psy2145 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD-PTL-KVEWFRNEKPLEDSSRITT 555 (808)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~~-~v~W~k~g~~l~~~~~~~~ 555 (808)
..+|.+....... .+.+|+.++|.|.+ .|. |.+ .|.|+|+|..+.......+
T Consensus 341 -----------------------~~~P~v~~~~~~~-~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~g~~~~~~~~~~~ 394 (438)
T 1qgc_4 341 -----------------------TTPPSVYPLAPGS-AAAAASMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPAV 394 (438)
T ss_dssp -----------------------CBCCEEEEECCCG-GGCCSSEEEEEEEE--ESCBSSCCEEEEGGGTCCSSEEECCCE
T ss_pred -----------------------CCCCeEEEcCccc-ccccCCcEEEEEEe--ccccCCCcEEEEecCCCCCceeecCcc
Confidence 0123222222222 46789999999999 676 887 9999999988763211111
Q ss_pred EeeCcE---EEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 556 KHDFGY---VAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 556 ~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
...+.+ ..|.|.++..+| |.|+|.|.|..|.......|
T Consensus 395 ~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 395 LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred ccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence 122211 259999999889 99999999999987766554
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=359.09 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=244.1
Q ss_pred eeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEcc--------------CCCceEEEe---cCceEEEEEccCCCCCcEE
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK--------------SGSRFTETN---NFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~--------------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~ 255 (808)
+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+. ...++.... ..+..+|.|.+++.+|+|.
T Consensus 4 v~~~~G~~v~L~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 4 VLGKKGDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEETTSCEEECCCC--TTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred EEEeCCCeEEEEEEe--cCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence 568899999999998 588999999999986421 122333322 2344579999999999999
Q ss_pred EEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEE
Q psy2145 256 YTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335 (808)
Q Consensus 256 Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l 335 (808)
|+|.|.|..+ .+.|.|... ...+ ...+.+|+.+.|
T Consensus 82 Y~C~~~n~~~----~~~l~V~~~----------------------------------------~~~~-~~~v~~G~~v~l 116 (363)
T 1wio_A 82 YICEVEDQKE----EVQLLVFGL----------------------------------------TANS-DTHLLQGQSLTL 116 (363)
T ss_dssp EEEEETTEEE----EEEEEEEEE----------------------------------------EESS-CSSEESBSCEEE
T ss_pred EEEEEEECCC----cEEEEEEeC----------------------------------------CCCC-ceEEecCCCEEE
Confidence 9999988643 566666530 0111 235689999999
Q ss_pred EEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccc
Q psy2145 336 EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQL 415 (808)
Q Consensus 336 ~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~ 415 (808)
.|.+ .+.|.+.|.|+++|..+. ...+ .|.|.++..+|+|.|+|.|.|..+.....+.|.|...+...
T Consensus 117 ~C~~--~~~p~~~v~W~~~~~~~~--------~~~~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~- 183 (363)
T 1wio_A 117 TLES--PPGSSPSVQCRSPRGKNI--------QGGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS- 183 (363)
T ss_dssp EEEC--CTTCCCCEEEECSSSCEE--------EESS--EEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE-
T ss_pred EEEc--CCCCCCeEEEEcCCCccc--------ccce--EEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC-
Confidence 9998 688999999999986541 1222 79999999999999999999987776666666665432110
Q ss_pred cccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCc
Q psy2145 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEV 495 (808)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (808)
T Consensus 184 -------------------------------------------------------------------------------- 183 (363)
T 1wio_A 184 -------------------------------------------------------------------------------- 183 (363)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCC-----CCCcEEEEEECCEecCC--------CCCeEEEe-----
Q psy2145 496 DDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG-----DPTLKVEWFRNEKPLED--------SSRITTKH----- 557 (808)
Q Consensus 496 ~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g-----~P~~~v~W~k~g~~l~~--------~~~~~~~~----- 557 (808)
....+.+|+.+.|.|.+ .+ .|.+.|+|+|+|..+.. +.++.+..
T Consensus 184 ----------------~~~~~~~G~~v~l~C~~--~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (363)
T 1wio_A 184 ----------------SIVYKKEGEQVEFSFPL--AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDP 245 (363)
T ss_dssp ----------------EEEEEETBCCEEEECCC--CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSS
T ss_pred ----------------CceEEecCCEEEEEEEE--ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccch
Confidence 01147789999999988 56 78999999999998876 45555432
Q ss_pred -----eCcEEEEEECCCCCCCCEEEEEEEEeC--CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCc
Q psy2145 558 -----DFGYVAMDLSHVRAEDEGIYICKATNA--LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPE 630 (808)
Q Consensus 558 -----~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~ 630 (808)
..+...|.|.++..+|+|.|+|.|.|. .|.....+.|.|...
T Consensus 246 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v------------------------------- 294 (363)
T 1wio_A 246 KLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA------------------------------- 294 (363)
T ss_dssp CCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE-------------------------------
T ss_pred hhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe-------------------------------
Confidence 233448999999999999999999999 999988888888621
Q ss_pred cccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeE--EEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEE
Q psy2145 631 RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR--FEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGV 708 (808)
Q Consensus 631 ~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~--i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 708 (808)
.|+.+.|.|.+ .|.|.|. |.|+|||..+..+ ..|.|.++..+|+|.
T Consensus 295 -------------------~g~~~~l~C~~--~g~p~p~~~i~W~~~~~~~~~~-----------~~l~i~~v~~~d~G~ 342 (363)
T 1wio_A 295 -------------------TQLQKNLTCEV--WGPTSPKLMLSLKLENKEAKVS-----------KREKAVWVLNPEAGM 342 (363)
T ss_dssp -------------------CCCSSSEEEEE--ESSCCTTCCEEEECSSSSCSEE-----------ESSSEEEESSCCSEE
T ss_pred -------------------cCCCeeEEEEE--ccccCCCccEEEEeCCCceeee-----------eeeeeeeecccccee
Confidence 18889999999 7888888 9999999888642 257889999999999
Q ss_pred EEEEEEeCCcceEEEEEEEEE
Q psy2145 709 YMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 709 Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|+|.|+|. |....++.|.|.
T Consensus 343 Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 343 WQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp EEEEECSS-SSCCEEEEEEEC
T ss_pred EEEEEecC-CeEEEecceEec
Confidence 99999975 777778888774
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=355.01 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=244.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec--------------cCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI--------------GHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~--------------~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
.+.+|++++|.|.+. +.|.+.|.|+|+|..+.. ..|+.+.. +.+..+|.|.+++.+|+|.|
T Consensus 5 ~~~~G~~v~L~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 5 LGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEETTSCEEECCCCT--TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred EEeCCCeEEEEEEec--CCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 688999999999998 578899999999864321 23444332 33456899999999999999
Q ss_pred EEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEE
Q psy2145 124 TCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L 203 (808)
+|.|.|.. ..+.|.|.. +...+ ...+.+|++++|
T Consensus 83 ~C~~~n~~----~~~~l~V~~-----------------------------------------~~~~~-~~~v~~G~~v~l 116 (363)
T 1wio_A 83 ICEVEDQK----EEVQLLVFG-----------------------------------------LTANS-DTHLLQGQSLTL 116 (363)
T ss_dssp EEEETTEE----EEEEEEEEE-----------------------------------------EEESS-CSSEESBSCEEE
T ss_pred EEEEEECC----CcEEEEEEe-----------------------------------------CCCCC-ceEEecCCCEEE
Confidence 99998863 356666642 11112 235789999999
Q ss_pred EEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccc
Q psy2145 204 ECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283 (808)
Q Consensus 204 ~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~ 283 (808)
.|.+ .+.|.+.|.|+++|..+.. ..+ .|.|.++..+|+|.|+|.|.|..+....++.|.|...+
T Consensus 117 ~C~~--~~~p~~~v~W~~~~~~~~~--------~~~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p---- 180 (363)
T 1wio_A 117 TLES--PPGSSPSVQCRSPRGKNIQ--------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ---- 180 (363)
T ss_dssp EEEC--CTTCCCCEEEECSSSCEEE--------ESS--EEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCS----
T ss_pred EEEc--CCCCCCeEEEEcCCCcccc--------cce--EEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCC----
Confidence 9999 5788999999998765421 112 89999999999999999999987777777777775422
Q ss_pred cccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC-----CCccEEEEEECCEec
Q psy2145 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG-----DSKLKVTWLRNGVPI 358 (808)
Q Consensus 284 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g-----~p~~~v~W~~~g~~l 358 (808)
.. +....+.+|+.+.|.|.+ .+ .|.+.|+|+++|..+
T Consensus 181 ---------------------------------~~---~~~~~~~~G~~v~l~C~~--~~~~~~~~P~p~i~W~~~g~~~ 222 (363)
T 1wio_A 181 ---------------------------------KA---SSIVYKKEGEQVEFSFPL--AFTVEKLTGSGELWWQAERASS 222 (363)
T ss_dssp ---------------------------------CS---EEEEEEETBCCEEEECCC--CCCCCSSCEEEEEEEEESSCCC
T ss_pred ---------------------------------CC---CCceEEecCCEEEEEEEE--ecccccCCCceeEEEecCCCCc
Confidence 11 145568899999999988 56 788999999999988
Q ss_pred cC--------CCcEEEEe----------eCcEEEEEEccCCCCCCeEEEEEEEcC--CcceEEEEEEEEEeccccccccc
Q psy2145 359 QA--------SNRVSTMH----------DFGYVALNFKYTYPEDSGTYTCRAVNE--LGEAVTSSTLFVESKASLQLDTQ 418 (808)
Q Consensus 359 ~~--------~~~~~~~~----------~~~~~~L~I~~v~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~ 418 (808)
.. +.++.+.. .++..+|.|.++..+|+|.|+|.|.|. .|.....+.|.|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~--------- 293 (363)
T 1wio_A 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR--------- 293 (363)
T ss_dssp CCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE---------
T ss_pred cceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE---------
Confidence 76 44554432 223447999999999999999999999 99888888888762
Q ss_pred chHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCC
Q psy2145 419 NEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDN 498 (808)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (808)
T Consensus 294 -------------------------------------------------------------------------------- 293 (363)
T 1wio_A 294 -------------------------------------------------------------------------------- 293 (363)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE--EEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEE
Q psy2145 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK--VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 499 ~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~--v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 576 (808)
..|+.+.|+|.+ .|.|.+. |+|+|+|+.+..+. .|.|.++..+|+|.
T Consensus 294 ------------------v~g~~~~l~C~~--~g~p~p~~~i~W~~~~~~~~~~~-----------~l~i~~v~~~d~G~ 342 (363)
T 1wio_A 294 ------------------ATQLQKNLTCEV--WGPTSPKLMLSLKLENKEAKVSK-----------REKAVWVLNPEAGM 342 (363)
T ss_dssp ------------------ECCCSSSEEEEE--ESSCCTTCCEEEECSSSSCSEEE-----------SSSEEEESSCCSEE
T ss_pred ------------------ecCCCeeEEEEE--ccccCCCccEEEEeCCCceeeee-----------eeeeeeecccccee
Confidence 128889999999 7888888 99999998876321 47889999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEE
Q psy2145 577 YICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 577 Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
|+|.|.|. |....++.|.|.
T Consensus 343 Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 343 WQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp EEEEECSS-SSCCEEEEEEEC
T ss_pred EEEEEecC-CeEEEecceEec
Confidence 99999975 667777777764
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=321.50 Aligned_cols=287 Identities=26% Similarity=0.445 Sum_probs=214.3
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEE--eeCcEEEEEEccCCC-CCCeEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTM--HDFGYVALNFKYTYP-EDSGTYTC 390 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~--~~~~~~~L~I~~v~~-~d~G~Y~C 390 (808)
.+|.|...+.+..+.+|+.+.|.|.+ .|.|.+.|+|+++|..+... ++... .++....|.|.++.. +|+|.|+|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~--~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 5 EPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEE--ECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred cCCeeeecCCceEecCCCeEEEEEEE--EEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence 58999999999999999999999999 78999999999999998654 44433 233446899999998 99999999
Q ss_pred EEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEe
Q psy2145 391 RAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIIT 470 (808)
Q Consensus 391 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 470 (808)
.|.|..|.....+.|.|...+..+
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~p-------------------------------------------------------- 105 (304)
T 2yd9_A 82 VAQNSVGEITVHAKLTVLREDQLP-------------------------------------------------------- 105 (304)
T ss_dssp EEECSSCEECCEEEEEEECGGGCC--------------------------------------------------------
T ss_pred EEECCCCeEEEEEEEEEeccccCC--------------------------------------------------------
Confidence 999999998778889887653211
Q ss_pred cccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC
Q psy2145 471 DTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS 550 (808)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~ 550 (808)
...|.|...+... .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+...
T Consensus 106 ------------------------------~~~p~i~~~~~~~-~v~~g~~v~l~C~~--~g~p~~~v~W~k~~~~~~~~ 152 (304)
T 2yd9_A 106 ------------------------------SGFPNIDMGPQLK-VVERTRTATMLCAA--SGNPDPEITWFKDFLPVDPS 152 (304)
T ss_dssp ------------------------------TTCCEEEECCCCE-EEETTSCEEECCEE--ECSSCCEEEEEETTEECCGG
T ss_pred ------------------------------CCCCeeecCCccE-EEeCCCeEEEEEEC--ccCCCCeEEEEECCEECcCC
Confidence 0123444443333 57899999999999 79999999999999998754
Q ss_pred C---CeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCC
Q psy2145 551 S---RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626 (808)
Q Consensus 551 ~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~ 626 (808)
. ++... ..+ .|.|.+++.+|+|.|+|.|.|..|..... +.|.|....
T Consensus 153 ~~~~~~~~~-~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~-------------------------- 203 (304)
T 2yd9_A 153 ASNGRIKQL-RSG--ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-------------------------- 203 (304)
T ss_dssp GGTTSEEEC-TTS--CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC--------------------------
T ss_pred CCcceEEeC-CCe--EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec--------------------------
Confidence 2 33322 223 79999999999999999999999987754 666665321
Q ss_pred CCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCc
Q psy2145 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706 (808)
Q Consensus 627 ~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~ 706 (808)
.+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|++||..|..+.++. .+...|.|.++ +|+
T Consensus 204 -------~~P~~~~~~~~-~~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~ 267 (304)
T 2yd9_A 204 -------VAPRFSILPMS-HEIMPGGNVNITCVA--VGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDS 267 (304)
T ss_dssp -------EEEEEEECCCC-BCCCTTCCEEEEEEE--EEESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSC
T ss_pred -------cCCcEEecCCc-eEEcCCCeEEEEEEE--eeeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccC
Confidence 13555554443 568999999999999 799999999999999998766532 34557888876 699
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
|.|+|.|+|.+|..+.++.|.|.+++.+...
T Consensus 268 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~ 298 (304)
T 2yd9_A 268 ANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298 (304)
T ss_dssp EEEEEEEEETTEEEEEEEEEC----------
T ss_pred EEEEEEEEeCCCcEEEEEEEEEecCcccccc
Confidence 9999999999999999999999988776554
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=327.21 Aligned_cols=299 Identities=18% Similarity=0.253 Sum_probs=228.9
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCC-CccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGD-SKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRA 392 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a 392 (808)
.+|.|..++ ...+.+|+.+.|.|.+ .+. |.+.|.|+|+|..+..+.++.+.. +...|.|.++..+|+|.|+|.|
T Consensus 6 ~~P~~~~~~-~~~v~~G~~v~l~C~~--~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~ 80 (317)
T 2y25_A 6 TGPHFVEYL-SWEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVIL 80 (317)
T ss_dssp SCCEEEEEE-EEEEETTTEEEEEEEE--ESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEE
T ss_pred CCCcEeeee-eEEECCCCeEEEEEEE--cCCCCCCEEEEEECCeEcCCCCcEEEEC--CeEEEEEccCCcccCeEEEEEE
Confidence 578888655 5889999999999998 565 789999999999998777765542 3358999999999999999999
Q ss_pred EcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecc
Q psy2145 393 VNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDT 472 (808)
Q Consensus 393 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 472 (808)
.|..|.....+.|.|...+.+....
T Consensus 81 ~n~~g~~~~~~~l~v~~~~~~~~~~------------------------------------------------------- 105 (317)
T 2y25_A 81 KDDRGKDKSRLKLVDEAFKELMMEV------------------------------------------------------- 105 (317)
T ss_dssp ESSSCEEEEEECCSTHHHHHHHHHH-------------------------------------------------------
T ss_pred ECCCCcEEEEEEEEEecCccccccC-------------------------------------------------------
Confidence 9999987766655554332111000
Q ss_pred cCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCC----------CCCcEEEEEE
Q psy2145 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG----------DPTLKVEWFR 542 (808)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g----------~P~~~v~W~k 542 (808)
.. ..+.+|+.+.|.|.+ .+ .|.+.+.|+|
T Consensus 106 --------------------------------------~~-~~~~~g~~~~l~c~~--~~~~l~c~~~~~~p~~~i~W~~ 144 (317)
T 2y25_A 106 --------------------------------------CK-KIALSATDLKIQSTA--EGIQLYSFVTYYVEDLKVNWSH 144 (317)
T ss_dssp --------------------------------------HH-HHHTCBCCCEEEECS--SEEEEEEEBSSCCSSCEEEEEE
T ss_pred --------------------------------------Cc-eecccCCCeEEEeec--cccEEEEEeccCCCCcEEEEEE
Confidence 00 023445555555544 33 7999999999
Q ss_pred CCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCC
Q psy2145 543 NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622 (808)
Q Consensus 543 ~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~ 622 (808)
+|..+..+.++.....++...|.|.+++.+|+|.|+|.|.|..|....++.|.|......... +..+..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~---------~~~~~~~- 214 (317)
T 2y25_A 145 NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE---------FQRLKQA- 214 (317)
T ss_dssp SSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHH---------HHHHHHH-
T ss_pred CCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchh---------hcccCCc-
Confidence 999999888888888888788999999999999999999999999988888776532110000 0000000
Q ss_pred CCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccC
Q psy2145 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKC 701 (808)
Q Consensus 623 ~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v 701 (808)
......+|.+...+.....+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+..+ ++.+.|.|.++
T Consensus 215 ------~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~--~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v 286 (317)
T 2y25_A 215 ------AIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286 (317)
T ss_dssp ------HHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE--ECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSC
T ss_pred ------ccCcCCCCcccccCCccEEEEcCCEEEEEEEE--ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCC
Confidence 00011246777766666779999999999999 7999999999999999999999888776 67889999999
Q ss_pred CCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 702 VPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
..+|+|.|+|.|.|.+|..+.++.|.|..+
T Consensus 287 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 287 STADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp CSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 999999999999999999999999999865
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=312.98 Aligned_cols=284 Identities=24% Similarity=0.425 Sum_probs=216.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEE--ecCceEEEEEccCCC-CCcEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET--NNFGFVALDIMQCLP-EDSGVYT 257 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~--~~~~~~~L~I~~~~~-~D~G~Y~ 257 (808)
..+|.|...+.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+... ++... .++...+|.|.++.. +|+|.|+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~--~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~ 80 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYE 80 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEE--ECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEE--EEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEE
Confidence 568999999999999999999999999 57888999999999998654 34333 233346899999998 9999999
Q ss_pred EEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEE
Q psy2145 258 CRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEA 337 (808)
Q Consensus 258 C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 337 (808)
|.|.|..|.....+.|.|...+.+ ....|.+...+....+.+|+.+.|.|
T Consensus 81 C~a~n~~g~~~~~~~l~V~~~~~~------------------------------p~~~p~i~~~~~~~~v~~g~~v~l~C 130 (304)
T 2yd9_A 81 CVAQNSVGEITVHAKLTVLREDQL------------------------------PSGFPNIDMGPQLKVVERTRTATMLC 130 (304)
T ss_dssp EEEECSSCEECCEEEEEEECGGGC------------------------------CTTCCEEEECCCCEEEETTSCEEECC
T ss_pred EEEECCCCeEEEEEEEEEeccccC------------------------------CCCCCeeecCCccEEEeCCCeEEEEE
Confidence 999999999888899999764211 11236777777778899999999999
Q ss_pred EEeecCCCccEEEEEECCEeccCCC---cEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecccc
Q psy2145 338 RLIPVGDSKLKVTWLRNGVPIQASN---RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVESKASL 413 (808)
Q Consensus 338 ~~~~~g~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~ 413 (808)
.+ .|.|.+.|.|+++|..+..+. ++....+ + .|.|.++..+|+|.|+|.|.|..|...+. +.|.|....
T Consensus 131 ~~--~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~-- 203 (304)
T 2yd9_A 131 AA--SGNPDPEITWFKDFLPVDPSASNGRIKQLRS-G--ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN-- 203 (304)
T ss_dssp EE--ECSSCCEEEEEETTEECCGGGGTTSEEECTT-S--CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC--
T ss_pred EC--ccCCCCeEEEEECCEECcCCCCcceEEeCCC-e--EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec--
Confidence 99 799999999999999887542 3433322 3 79999999999999999999999877654 566664211
Q ss_pred cccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCC
Q psy2145 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRP 493 (808)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (808)
T Consensus 204 -------------------------------------------------------------------------------- 203 (304)
T 2yd9_A 204 -------------------------------------------------------------------------------- 203 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCC
Q psy2145 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAED 573 (808)
Q Consensus 494 ~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D 573 (808)
.+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|+|+|+|..+....++. .+...|.|.++ +|
T Consensus 204 --------~~P~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d 266 (304)
T 2yd9_A 204 --------VAPRFSILPMSH-EIMPGGNVNITCVA--VGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KD 266 (304)
T ss_dssp --------EEEEEEECCCCB-CCCTTCCEEEEEEE--EEESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CS
T ss_pred --------cCCcEEecCCce-EEcCCCeEEEEEEE--eeeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--cc
Confidence 123444443333 58899999999999 789999999999999998765432 34457888776 69
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
+|.|+|.|.|..|....++.|.|...+.
T Consensus 267 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 294 (304)
T 2yd9_A 267 SANYTCVAMSSLGVIEAVAQITVKSLPK 294 (304)
T ss_dssp CEEEEEEEEETTEEEEEEEEEC------
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence 9999999999999999999999987644
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=309.97 Aligned_cols=276 Identities=20% Similarity=0.432 Sum_probs=215.7
Q ss_pred CCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEE-CCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR-NGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 315 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
+|.+...+....+.+|+.+.|.|.+ .|.|. .+.|++ +|..+..+.++.+..++...+|.|.++..+|+|.|+|.|.
T Consensus 4 ~p~v~~~~~~~~v~~G~~v~l~C~~--~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~ 80 (291)
T 2wim_A 4 LLQVTISLSKVELSVGESKFFTCTA--IGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 80 (291)
T ss_dssp CCEEEESCSEEEEETTCCEEEEEEE--ESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CceEEEeccceEecCCCcEEEEEEE--eCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEe
Confidence 7788888889999999999999999 67775 899999 8888888888888888778899999999999999999999
Q ss_pred cCCcceE-EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecc
Q psy2145 394 NELGEAV-TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDT 472 (808)
Q Consensus 394 n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 472 (808)
|..|... ..+.|.|..++.
T Consensus 81 n~~g~~~~~~~~l~v~~~~~------------------------------------------------------------ 100 (291)
T 2wim_A 81 DAKGQTQEATVVLEIYQKLT------------------------------------------------------------ 100 (291)
T ss_dssp CSSSCEEEEEEEEEEECCCB------------------------------------------------------------
T ss_pred cccCceEEEEEEEEecCCcc------------------------------------------------------------
Confidence 9988764 346666654322
Q ss_pred cCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC--C
Q psy2145 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED--S 550 (808)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~--~ 550 (808)
|...+.+. .+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. .
T Consensus 101 ---------------------------------~~~~~~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~ 144 (291)
T 2wim_A 101 ---------------------------------FREVVSPQ-EFKQGEDAEVVCRV--SSSPAPAVSWLYHNEEVTTISD 144 (291)
T ss_dssp ---------------------------------CCSCCCSE-EEETTSCEEECCCC--BCSSCCEEEEECC----CBCCC
T ss_pred ---------------------------------eEeCCCCh-hhcCCCCEEEEEEE--ccCCCCEEEEEECCccccccCC
Confidence 11112222 47899999999998 7999999999999998864 3
Q ss_pred CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEE--EEEEEEEEecccccccccCcccccccccccCCCCCCCCC
Q psy2145 551 SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAV--TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQE 628 (808)
Q Consensus 551 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~ 628 (808)
.++....+ + .|.|.++..+|+|.|+|.|.|..+... ..+.|.|..+|.+.
T Consensus 145 ~~~~~~~~-~--~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~------------------------- 196 (291)
T 2wim_A 145 NRFAMLAN-N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS------------------------- 196 (291)
T ss_dssp SSEEECTT-S--CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCB-------------------------
T ss_pred ceEEEccC-C--CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccc-------------------------
Confidence 44444333 2 699999999999999999999875443 44556665543321
Q ss_pred CccccCCCeEEeecCC-CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcE
Q psy2145 629 PERQYEKPIFTQLLTG-TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG 707 (808)
Q Consensus 629 ~~~~~~~P~~~~~~~~-~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G 707 (808)
..... ...+.+|+.+.|.|.+ .|.|.|.|.|++||..+..+.++.+.... ..|.|.++..+|+|
T Consensus 197 -----------~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G 261 (291)
T 2wim_A 197 -----------MPQKSFNATAERGEEMTFSCRA--SGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGG 261 (291)
T ss_dssp -----------CSCSEEECCSSSCCEEEEECBC--CCBSCCEEEEEETTEECCCTTTEEECSTT--CEEEEESCCSTTCE
T ss_pred -----------cCcccccceecCCCeEEEEEEe--ecCCCCeEEEEECCEECcCCccEEEcCCc--cEEEEeeCCcccCE
Confidence 11110 2357899999999999 79999999999999999988887765433 48999999999999
Q ss_pred EEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 708 VYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 708 ~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
.|+|.|.|.+|.+++++.|.|..++
T Consensus 262 ~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 262 PYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp EEEEEEEETTEEEEEEEEEEC----
T ss_pred EEEEEEEECCCceeeeEEEEEEEec
Confidence 9999999999999999999998765
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=333.35 Aligned_cols=383 Identities=12% Similarity=0.131 Sum_probs=239.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee-----------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT-----------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.|.|||+ |..+. ...|+.+..+ .+..+|.
T Consensus 4 ~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (444)
T 1igt_B 4 LQESGGG-LVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQ 82 (444)
T ss_dssp EEEECCC-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred EecCCCe-EEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEE
Confidence 4456677 89999999999999852113578999985 33221 1357777654 3567999
Q ss_pred EcccCcCCCeeEEEEEEecCcce---EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGFA---EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
|.+++.+|+|.|+|.|.|..+.. ...+.|.|.... ..+|.+..
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~i~~ 128 (444)
T 1igt_B 83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK----------------------------------TTAPSVYP 128 (444)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC----------------------------------CBCCEEEE
T ss_pred ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC----------------------------------CCCCceeE
Confidence 99999999999999999976541 233566664211 23455544
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.+....+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........+. ...|.|.++..+| |.|+|.|.|..
T Consensus 129 ~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~ 206 (444)
T 1igt_B 129 LAPVCGDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA 206 (444)
T ss_dssp ECCCSSCCCSSCEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETT
T ss_pred ecccccCCCCCcEEEEEEEcc-eeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCC
Confidence 443444689999999999953 23655 999999988642110000011111 1369999999999 99999999998
Q ss_pred eeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee-ccCCCceE-eecCCeEEEEEEEeec
Q psy2145 265 GQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIH-VAENQAAHFEARLIPV 342 (808)
Q Consensus 265 g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-v~~G~~~~l~C~~~~~ 342 (808)
|.......+.+......... . ..........+|.+ ..++.... +.+|+.+.|.|.+ .
T Consensus 207 ~~~~~~~~i~~~~~~~~~~~-----------------~--~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~--~ 265 (444)
T 1igt_B 207 SSTKVDKKIEPRGPTIKPCP-----------------P--CKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV--V 265 (444)
T ss_dssp TTEEEEEECCCCCCSCCCCC-----------------C--CSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE--E
T ss_pred CCcceEEEeccCCCCcccCC-----------------c--cccCCcccCCCceEEecCCchhheeecCCCcEEEEEE--e
Confidence 87655444433110000000 0 00000001124443 44443333 5889999999999 4
Q ss_pred CC---C-ccEEEEEECCEeccCCCcE--EEEeeC---cEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccc
Q psy2145 343 GD---S-KLKVTWLRNGVPIQASNRV--STMHDF---GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413 (808)
Q Consensus 343 g~---p-~~~v~W~~~g~~l~~~~~~--~~~~~~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 413 (808)
|. | .+.|+|+|+|..+...... ....++ ...+|.|.++..+|+|.|+|.|.|..|.......+.+...
T Consensus 266 g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~--- 342 (444)
T 1igt_B 266 DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKG--- 342 (444)
T ss_dssp EECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCC---
T ss_pred ecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCC---
Confidence 55 3 4799999999988654321 111111 2347999999999999999999999887633333321000
Q ss_pred cccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCC
Q psy2145 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRP 493 (808)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (808)
T Consensus 343 -------------------------------------------------------------------------------- 342 (444)
T 1igt_B 343 -------------------------------------------------------------------------------- 342 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCC-CCCc-EEEEEECCEecCCCCC--eEEEeeCcE---EEEEE
Q psy2145 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG-DPTL-KVEWFRNEKPLEDSSR--ITTKHDFGY---VAMDL 566 (808)
Q Consensus 494 ~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~~-~v~W~k~g~~l~~~~~--~~~~~~~~~---~~L~I 566 (808)
...+|.+.........+..|+ ++|.|.+ .| .|.+ .|+|+|||..+..... .....++.+ ..|.|
T Consensus 343 ------~~~~P~v~~~~~~~~~~~~~~-~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i 413 (444)
T 1igt_B 343 ------SVRAPQVYVLPPPEEEMTKKQ-VTLTCMV--TDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRV 413 (444)
T ss_dssp ------CCBCCEEEEECCCGGGTTSSE-EEEEEEE--EEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEE
T ss_pred ------CCCCCEEEEeCCChHHccCCe-EEEEEEE--EeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEE
Confidence 011333332222222345565 9999999 56 5655 8999999998853211 111122221 24777
Q ss_pred CCCCCCCCEEEEEEEEeCC
Q psy2145 567 SHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 567 ~~v~~~D~G~Y~C~a~N~~ 585 (808)
.....+|+|.|+|.|.|..
T Consensus 414 ~~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 414 EKKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp EHHHHHTCCCEEEEEECTT
T ss_pred ChHHhcCCCeEEEEEECCC
Confidence 7777788999999999975
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=333.66 Aligned_cols=380 Identities=14% Similarity=0.161 Sum_probs=238.2
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc-----------------CCCceEEEec--CceEEEEEc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK-----------------SGSRFTETNN--FGFVALDIM 246 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~ 246 (808)
..+..+.+.+|++|+|.|.+.+...+.+.|.|||+ |..+. ...|+.+..+ .+..+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (444)
T 1igt_B 5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS 84 (444)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence 34567789999999999999532113678999985 33210 1246665443 456789999
Q ss_pred cCCCCCcEEEEEEEEeCcee---EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC
Q psy2145 247 QCLPEDSGVYTCRAVNALGQ---AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR 323 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~ 323 (808)
+++.+|+|.|+|.|.|..+. ....+.|.|.... ..+|.+.....
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------~~~P~i~~~~~ 131 (444)
T 1igt_B 85 RLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK---------------------------------TTAPSVYPLAP 131 (444)
T ss_dssp SCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC---------------------------------CBCCEEEEECC
T ss_pred CCCHHHCEEEEEEEecCCcccccccCcEEEEecCCC---------------------------------CCCCceeEecc
Confidence 99999999999999997654 2234567775311 12343332222
Q ss_pred ceEeecCCeEEEEEEEeecC-CCcc-EEEEEECCEeccC--CCcEEEEeeCc---EEEEEEccCCCCCCeEEEEEEEcCC
Q psy2145 324 DIHVAENQAAHFEARLIPVG-DSKL-KVTWLRNGVPIQA--SNRVSTMHDFG---YVALNFKYTYPEDSGTYTCRAVNEL 396 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g-~p~~-~v~W~~~g~~l~~--~~~~~~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~ 396 (808)
...+.+|+.+.|.|.+ .| .|.+ .|.|+++|..+.. ..... ..+. ...|.|.++..+| |.|+|.|.|..
T Consensus 132 ~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~ 206 (444)
T 1igt_B 132 VCGDTTGSSVTLGCLV--KGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA 206 (444)
T ss_dssp CSSCCCSSCEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECSTTTTT-SCCEEEEEETT
T ss_pred cccCCCCCcEEEEEEE--cceeCCCcEEEEecCCCCCCeEecCccc--cCCcEEEEEEEEEchhhcCC-CeEEEEEEeCC
Confidence 2234789999999998 45 4665 9999999876421 11111 1111 1368999999999 99999999999
Q ss_pred cceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCc
Q psy2145 397 GEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPK 476 (808)
Q Consensus 397 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (808)
|.......+.+....... +. +
T Consensus 207 ~~~~~~~~i~~~~~~~~~------------------------------~~--~--------------------------- 227 (444)
T 1igt_B 207 SSTKVDKKIEPRGPTIKP------------------------------CP--P--------------------------- 227 (444)
T ss_dssp TTEEEEEECCCCCCSCCC------------------------------CC--C---------------------------
T ss_pred CCcceEEEeccCCCCccc------------------------------CC--c---------------------------
Confidence 886544443321100000 00 0
Q ss_pred hhhhhcccccCCCCCCCCcCCCCccCCCee-eecCCCcccccCCCceEEEEEEeeCCC---C-CcEEEEEECCEecCCCC
Q psy2145 477 GLEKIRKLEDTEPHKRPEVDDNATKQRPVF-TKPLQNIDAVEEGKNAHFSCRLIPVGD---P-TLKVEWFRNEKPLEDSS 551 (808)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g~---P-~~~v~W~k~g~~l~~~~ 551 (808)
..+ .......+|.+ +.++.....+.+|+.+.|.|.+ .|. | .+.|+|+|+|..+....
T Consensus 228 -------------~~~---~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~--~g~~~~p~~~~v~W~k~~~~~~~~~ 289 (444)
T 1igt_B 228 -------------CKC---PAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV--VDVSEDDPDVQISWFVNNVEVHTAQ 289 (444)
T ss_dssp -------------CSC---CCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE--EEECTTCCCCEEEEEETTEECSSTT
T ss_pred -------------ccc---CCcccCCCceEEecCCchhheeecCCCcEEEEEE--eecccCCCCeEEEEEECCccccCcc
Confidence 000 00001123443 3333322125889999999999 565 3 47999999999886543
Q ss_pred Ce--EEEeeC---cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCC
Q psy2145 552 RI--TTKHDF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMP 626 (808)
Q Consensus 552 ~~--~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~ 626 (808)
.. ....++ ....|.|.++..+|+|.|+|.|.|..|.......+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~---------------------------- 341 (444)
T 1igt_B 290 TQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPK---------------------------- 341 (444)
T ss_dssp CBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCC----------------------------
T ss_pred cccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccC----------------------------
Confidence 21 111111 234799999999999999999999998764444332210
Q ss_pred CCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEE--EEeCCE---EEEEEc
Q psy2145 627 QEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHV--QHDFGY---VTLDIT 699 (808)
Q Consensus 627 ~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~--~~~~~~---~~L~I~ 699 (808)
....+|.+.........+..|+ ++|.|.+ .| .|.+ .|.|+|||..+........ ..++.+ +.|.|.
T Consensus 342 ----~~~~~P~v~~~~~~~~~~~~~~-~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~ 414 (444)
T 1igt_B 342 ----GSVRAPQVYVLPPPEEEMTKKQ-VTLTCMV--TDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVE 414 (444)
T ss_dssp ----CCCBCCEEEEECCCGGGTTSSE-EEEEEEE--EEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEE
T ss_pred ----CCCCCCEEEEeCCChHHccCCe-EEEEEEE--EeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEC
Confidence 0113466655544333455554 9999999 67 5655 9999999999853211111 112222 357777
Q ss_pred cCCCCCcEEEEEEEEeCC
Q psy2145 700 KCVPADSGVYMCKAINRA 717 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~N~~ 717 (808)
....+|.|.|+|.|.|..
T Consensus 415 ~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 415 KKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp HHHHHTCCCEEEEEECTT
T ss_pred hHHhcCCCeEEEEEECCC
Confidence 777778999999999985
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=305.23 Aligned_cols=276 Identities=19% Similarity=0.307 Sum_probs=212.4
Q ss_pred CCeeccCCCceEeecCCeEEEEEEEeecCCC-ccEEEEEE-CCEeccCC-CcEEEEe-eCcEEEEEEccCCCCCCeEEEE
Q psy2145 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDS-KLKVTWLR-NGVPIQAS-NRVSTMH-DFGYVALNFKYTYPEDSGTYTC 390 (808)
Q Consensus 315 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~-~g~~l~~~-~~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C 390 (808)
++.+...+....+.+|+.+.|.|.+ .+.| .+.|.|++ +|..+... .++.+.. +.+..+|.|.++..+|+|.|+|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~--~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEE--SSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEe--CCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence 5667777888899999999999999 6766 69999999 88887743 4555543 4466789999999999999999
Q ss_pred EEEcCCcce-EEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeE
Q psy2145 391 RAVNELGEA-VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTII 469 (808)
Q Consensus 391 ~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 469 (808)
.|.|..|.. ...+.|.|..+
T Consensus 80 ~~~n~~g~~~~~~~~l~v~~~----------------------------------------------------------- 100 (291)
T 1qz1_A 80 VVTAEDGTQSEATVNVKIFQK----------------------------------------------------------- 100 (291)
T ss_dssp EEECTTSCEEEEEEEEEEECC-----------------------------------------------------------
T ss_pred EEEcCCCCeeEEEEEEEeecc-----------------------------------------------------------
Confidence 999998643 34466666532
Q ss_pred ecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC
Q psy2145 470 TDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED 549 (808)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~ 549 (808)
|.|...+... .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+..
T Consensus 101 ----------------------------------~~~~~~~~~~-~~~~g~~v~l~C~~--~~~p~~~v~W~~~~~~~~~ 143 (291)
T 1qz1_A 101 ----------------------------------LMFKNAPTPQ-EFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVIL 143 (291)
T ss_dssp ----------------------------------SEEEECCSSE-EEETTSCEEECCEE--ECSSCCEEEEEETTSCSST
T ss_pred ----------------------------------ccccCCCCcc-cccCCCeEEEEEEe--ccCCCCEEEEEECCEEccc
Confidence 2233322232 57899999999999 7899999999999998865
Q ss_pred C--CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEE--EEEEEEEEecccccccccCcccccccccccCCCCCC
Q psy2145 550 S--SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAV--TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPM 625 (808)
Q Consensus 550 ~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~ 625 (808)
. .++.... ++ .|.|.+++.+|+|.|+|.|.|..+... ..+.|.|...|.+
T Consensus 144 ~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~----------------------- 197 (291)
T 1qz1_A 144 KKDVRFIVLS-NN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV----------------------- 197 (291)
T ss_dssp TCCTTEEECT-TS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEE-----------------------
T ss_pred CCCceEEEcc-CC--cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcc-----------------------
Confidence 3 3333332 23 699999999999999999999875433 4456666654332
Q ss_pred CCCCccccCCCeEEeecC-CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEeCCEEEEEEcc
Q psy2145 626 PQEPERQYEKPIFTQLLT-GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHDFGYVTLDITK 700 (808)
Q Consensus 626 ~~~~~~~~~~P~~~~~~~-~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~ 700 (808)
..... ....+.+|+.+.|.|.+ .|.|.|.|.|++||..+..+. ++.+. .....|.|.+
T Consensus 198 -------------~~~~~~~~~~~~~g~~v~l~C~~--~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~~~~~L~i~~ 260 (291)
T 1qz1_A 198 -------------QARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRN 260 (291)
T ss_dssp -------------EESCSEEEEETTSCCCEEEEEEE--EEESCCEEEEEETTEECCCC--CCSSEEEC--TTSCEEEECS
T ss_pred -------------cccccccccccccCceEEEEEEE--EEeCCCcEEEEECCEECcCCCCCCcceEEc--CCCcEEEEEe
Confidence 22111 12357899999999999 799999999999999998764 44443 3345899999
Q ss_pred CCCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 701 CVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 701 v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
+..+|+|.|+|.|.|.+|..+.++.|.|..+
T Consensus 261 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~k 291 (291)
T 1qz1_A 261 VDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291 (291)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred cChhcCEEEEEEEEeCCCceEEEEEEEEEcC
Confidence 9999999999999999999999999999753
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=318.08 Aligned_cols=300 Identities=20% Similarity=0.290 Sum_probs=224.5
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCC-CCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSD-NTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|..++ +..+.+|++++|.|.+. +. |.+.|.|+|+|..+..+.++... .+..+|.|.+++.+|+|.|+|.
T Consensus 5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~--~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~ 79 (317)
T 2y25_A 5 FTGPHFVEYL-SWEVTGECNVLLKCKVA--NIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVI 79 (317)
T ss_dssp SSCCEEEEEE-EEEEETTTEEEEEEEEE--SCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEE
T ss_pred cCCCcEeeee-eEEECCCCeEEEEEEEc--CCCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEEE
Confidence 5689998655 58899999999999984 54 78999999999999877766554 3345899999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeE------
Q psy2145 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAA------ 333 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~------ 333 (808)
|.|..|.....+.|.|...+ .+...+....+.+|+.+
T Consensus 80 ~~n~~g~~~~~~~l~v~~~~-------------------------------------~~~~~~~~~~~~~g~~~~l~c~~ 122 (317)
T 2y25_A 80 LKDDRGKDKSRLKLVDEAFK-------------------------------------ELMMEVCKKIALSATDLKIQSTA 122 (317)
T ss_dssp EESSSCEEEEEECCSTHHHH-------------------------------------HHHHHHHHHHHTCBCCCEEEECS
T ss_pred EECCCCcEEEEEEEEEecCc-------------------------------------cccccCCceecccCCCeEEEeec
Confidence 99999987766665554321 11111111223344444
Q ss_pred ---EEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEec
Q psy2145 334 ---HFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410 (808)
Q Consensus 334 ---~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 410 (808)
.|.|.+. .+.|.+.+.|+++|..+..+.++....+++...|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus 123 ~~~~l~c~~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 201 (317)
T 2y25_A 123 EGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY 201 (317)
T ss_dssp SEEEEEEEBS-SCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHH
T ss_pred cccEEEEEec-cCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeec
Confidence 4555441 127899999999999999888888888888888999999999999999999999998887777766432
Q ss_pred ccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCC
Q psy2145 411 ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPH 490 (808)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (808)
..... .++.+...
T Consensus 202 ~~~~~---------~~~~~~~~---------------------------------------------------------- 214 (317)
T 2y25_A 202 DEAYA---------EFQRLKQA---------------------------------------------------------- 214 (317)
T ss_dssp HHHHH---------HHHHHHHH----------------------------------------------------------
T ss_pred cccch---------hhcccCCc----------------------------------------------------------
Confidence 11100 00000000
Q ss_pred CCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee-CcEEEEEECCC
Q psy2145 491 KRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FGYVAMDLSHV 569 (808)
Q Consensus 491 ~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v 569 (808)
......+|.+...++....+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+..+.++.+..+ ++...|.|.++
T Consensus 215 ------~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~--~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v 286 (317)
T 2y25_A 215 ------AIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286 (317)
T ss_dssp ------HHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE--ECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSC
T ss_pred ------ccCcCCCCcccccCCccEEEEcCCEEEEEEEE--ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCC
Confidence 00011245555555554478999999999999 7999999999999999998888887766 66778999999
Q ss_pred CCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 570 RAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 287 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 287 STADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp CSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999999999999975
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=302.71 Aligned_cols=277 Identities=23% Similarity=0.421 Sum_probs=219.0
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee-CCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
.+|.|...+.++.+.+|+.++|.|.+ .+.|. .+.|++ +|..+..+.++....++...+|.|.+++.+|+|.|+|.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~--~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 79 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTA--IGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 79 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEE--ESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCceEEEeccceEecCCCcEEEEEEE--eCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence 57899999999999999999999999 46665 899999 888888888888877777779999999999999999999
Q ss_pred EeCceeEE-EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 261 VNALGQAV-TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 261 ~n~~g~~~-~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
.|..|... ..+.|.|.. +|.+...+....+.+|+.+.|.|.+
T Consensus 80 ~n~~g~~~~~~~~l~v~~-------------------------------------~~~~~~~~~~~~v~~G~~v~l~C~~ 122 (291)
T 2wim_A 80 TDAKGQTQEATVVLEIYQ-------------------------------------KLTFREVVSPQEFKQGEDAEVVCRV 122 (291)
T ss_dssp ECSSSCEEEEEEEEEEEC-------------------------------------CCBCCSCCCSEEEETTSCEEECCCC
T ss_pred ecccCceEEEEEEEEecC-------------------------------------CcceEeCCCChhhcCCCCEEEEEEE
Confidence 99888763 456666653 4455555667788999999999998
Q ss_pred eecCCCccEEEEEECCEeccC--CCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE--EEEEEEEecccccc
Q psy2145 340 IPVGDSKLKVTWLRNGVPIQA--SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT--SSTLFVESKASLQL 415 (808)
Q Consensus 340 ~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~~~~~~~ 415 (808)
.+.|.+.+.|++++..+.. ..++....++ .|.|.++..+|+|.|+|.|.|..+.... .+.+.|..+|.+.
T Consensus 123 --~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~- 196 (291)
T 2wim_A 123 --SSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS- 196 (291)
T ss_dssp --BCSSCCEEEEECC----CBCCCSSEEECTTS---CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCB-
T ss_pred --ccCCCCEEEEEECCccccccCCceEEEccCC---CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccc-
Confidence 7889999999999988764 3455544333 5999999999999999999998865443 3455555433221
Q ss_pred cccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCc
Q psy2145 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEV 495 (808)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (808)
T Consensus 197 -------------------------------------------------------------------------------- 196 (291)
T 2wim_A 197 -------------------------------------------------------------------------------- 196 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCeeeecCCC-cccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCC
Q psy2145 496 DDNATKQRPVFTKPLQN-IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574 (808)
Q Consensus 496 ~~~~~~~~P~f~~~~~~-~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~ 574 (808)
.+... ...+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..+.++.+....+ .|.|.++..+|+
T Consensus 197 ------------~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~ 260 (291)
T 2wim_A 197 ------------MPQKSFNATAERGEEMTFSCRA--SGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDG 260 (291)
T ss_dssp ------------CSCSEEECCSSSCCEEEEECBC--CCBSCCEEEEEETTEECCCTTTEEECSTTC--EEEEESCCSTTC
T ss_pred ------------cCcccccceecCCCeEEEEEEe--ecCCCCeEEEEECCEECcCCccEEEcCCcc--EEEEeeCCcccC
Confidence 11110 1147889999999999 899999999999999999888876654443 799999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 575 GIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
|.|+|.|.|..|..++++.|.|...+
T Consensus 261 G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 261 GPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp EEEEEEEEETTEEEEEEEEEEC----
T ss_pred EEEEEEEEECCCceeeeEEEEEEEec
Confidence 99999999999999999999998753
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=307.48 Aligned_cols=298 Identities=18% Similarity=0.245 Sum_probs=217.7
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEE
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~ 403 (808)
.+.+.+|+.+.|.|.+. .+.|.+.|.|+|+|.++..+.++.+..+++..+|.|.++..+|+|.|+|.|.|..|... ++
T Consensus 10 ~~~v~eg~~v~l~~~~~-~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~ 87 (312)
T 2y23_A 10 VVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SY 87 (312)
T ss_dssp EEEECTTCCEEEEEECS-SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EE
T ss_pred eEEEecCCeEEEEEEEe-CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EE
Confidence 45678999999999985 57899999999999999988899988888888999999999999999999999988654 45
Q ss_pred EEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcc
Q psy2145 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRK 483 (808)
Q Consensus 404 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (808)
.|.|.....+. .+..
T Consensus 88 ~l~v~~~~~~~-------------~~~~---------------------------------------------------- 102 (312)
T 2y23_A 88 LIDEEELKRLL-------------ALSH---------------------------------------------------- 102 (312)
T ss_dssp EECHHHHHHHH-------------HHHH----------------------------------------------------
T ss_pred EEEEeeeeeee-------------cccc----------------------------------------------------
Confidence 55543211000 0000
Q ss_pred cccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeC-CCCCcEEEEEECCEecCCCCCeEEEee--Cc
Q psy2145 484 LEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSSRITTKHD--FG 560 (808)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~-g~P~~~v~W~k~g~~l~~~~~~~~~~~--~~ 560 (808)
...+|.+.........+.+|+.+.|.|.+ . +.|.+.+.|+|+|..+..+.++.+..+ .+
T Consensus 103 ----------------~~~~p~~~~~~~~~~~v~~G~~v~l~C~~--~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~ 164 (312)
T 2y23_A 103 ----------------EHKFPTVPVKSELAVEILEKGQVRFWMQA--EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 164 (312)
T ss_dssp ----------------HHHSCBCCEEEEEEEEECSSSCEEEEEEE--SCCCSSCEEEEEETTEEECSSSSCEEEEETTTT
T ss_pred ----------------cCCCCccccccCCceEEeeCCCEEEEEEE--EeCCCCCEEEEEECCEECeeCCcEEEEEccCCC
Confidence 00011111111111257899999999999 6 899999999999999998888777654 56
Q ss_pred EEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEe
Q psy2145 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQ 640 (808)
Q Consensus 561 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~ 640 (808)
..+|.|.+++.+|+|.|+|.|.|..+... ..+.+......... ..++ ..+. +.....+|.|..
T Consensus 165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~-~~~~-------------~~~~~~~p~~~~ 227 (312)
T 2y23_A 165 IIEMFMEKLQDEDEGTYTFQLQDGKATNH--STVVLVGDVFKKLQ-KEAE-FQRQ-------------EWIRKQGPHFVE 227 (312)
T ss_dssp EEEEEESCCCGGGCEEEEEEEESSSCEEE--EEEEECTHHHHHHH-HHHH-HHHH-------------HHHHHHSSEEEE
T ss_pred EEEEEEccCCcccCEeEEEEEEeCCceEE--EEEEEcchhhhhhc-cccc-cccc-------------chhhccCCceee
Confidence 67899999999999999999987655443 33433211100000 0000 0000 000012477775
Q ss_pred ecCCCccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 641 LLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 641 ~~~~~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+. ..+.+|+.+.|.|.+ .|.|.| .|.|+|||..+..+.++.+. ++..+|.|.++..+|+|.|+|.|.|.+|.
T Consensus 228 ~~~--~~v~~G~~~~l~C~~--~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~ 301 (312)
T 2y23_A 228 YLS--WEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGK 301 (312)
T ss_dssp EEE--EEEETTTEEEEEEEE--ESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCC
T ss_pred cce--EEEeCCCEEEEEEEE--cCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCc
Confidence 554 568899999999999 799988 99999999999977777765 45679999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
.+.++.|.|+
T Consensus 302 ~~~~~~l~i~ 311 (312)
T 2y23_A 302 DKSRLKLVDE 311 (312)
T ss_dssp EEEEEEECSC
T ss_pred eeeeeEEEec
Confidence 9999999875
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=326.63 Aligned_cols=380 Identities=15% Similarity=0.198 Sum_probs=235.0
Q ss_pred ecCceeecCCCeEEEEEEEeecCCC--CeEEEEeeC--CEE---c--------------cCCCceEEEec--CceEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHN--NVP---I--------------KSGSRFTETNN--FGFVALDI 245 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~---l--------------~~~~~~~~~~~--~~~~~L~I 245 (808)
.+..+.+.+|++++|.|.+. +.+ .+.|.|||+ |.. + ....|+.+..+ .+..+|.|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQAS--GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL 83 (457)
T ss_dssp ECCCEEECTTCCEEECEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred cCCceEEcCCCCEEEEEEec--CccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence 45567899999999999994 544 678999984 321 1 01346665543 45678999
Q ss_pred ccCCCCCcEEEEEEEEeCce------------eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccC
Q psy2145 246 MQCLPEDSGVYTCRAVNALG------------QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~~g------------~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 313 (808)
.+++.+|+|.|+|.|.|..| .....+.|.|...+ .
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------~ 130 (457)
T 1hzh_H 84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS---------------------------------T 130 (457)
T ss_dssp CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC---------------------------------C
T ss_pred CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC---------------------------------C
Confidence 99999999999999999765 22244567775311 1
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCC-Cc-cEEEEEECCEeccCCCcEEEEeeCc----EEEEEEccCCCCCCeE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGD-SK-LKVTWLRNGVPIQASNRVSTMHDFG----YVALNFKYTYPEDSGT 387 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~-~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~d~G~ 387 (808)
.+|.+........+.+|+.+.|.|.+ .|. |. +.|.|+++|..+...........++ ...|.|.++..+| |.
T Consensus 131 ~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~ 207 (457)
T 1hzh_H 131 KGPSVFPLAPSSKSTSGGTAALGCLV--KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT 207 (457)
T ss_dssp BCCEEEEECCCSCCCTTCCEEEEEEE--ESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SC
T ss_pred CCCeEEecCccccccCCCcEEEEEEE--eEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ce
Confidence 24444333333446799999999999 455 64 8999999997653211111111222 2369999999999 99
Q ss_pred EEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCce
Q psy2145 388 YTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGT 467 (808)
Q Consensus 388 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 467 (808)
|+|.|.|..+.......+.+...+...
T Consensus 208 Y~C~a~n~~~~~~~~~~v~~~~~~~~~----------------------------------------------------- 234 (457)
T 1hzh_H 208 YICNVNHKPSNTKVDKKAEPKSCDKTH----------------------------------------------------- 234 (457)
T ss_dssp CEEEEEEGGGTEEEEEECCCCCSCSSC-----------------------------------------------------
T ss_pred EEEEEEeCCCCcceeEEecccCCCccc-----------------------------------------------------
Confidence 999999988776544444332211000
Q ss_pred eEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCee-eecCCCcccccCCCceEEEEEEeeCCCCCc----EEEEEE
Q psy2145 468 IITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVF-TKPLQNIDAVEEGKNAHFSCRLIPVGDPTL----KVEWFR 542 (808)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~----~v~W~k 542 (808)
.+..........+|.+ +.++.....+.+|+.+.|.|.+ .|.|++ .|+|+|
T Consensus 235 -----------------------~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~--~g~~p~p~~~~i~W~k 289 (457)
T 1hzh_H 235 -----------------------TCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV--VDVSHEDPEVKFNWYV 289 (457)
T ss_dssp -----------------------SCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE--ECCCTTCCCCEEEEEE
T ss_pred -----------------------ccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE--EcccCCCCceEEEEEe
Confidence 0000000001123333 4333322236789999999999 576543 999999
Q ss_pred CCEecCCCCCe-EEEeeCcEEE-EEECCCCCCC---CEEEEEEEEeCCeeEEEEEEEEEEecccccccccCccccccccc
Q psy2145 543 NEKPLEDSSRI-TTKHDFGYVA-MDLSHVRAED---EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQE 617 (808)
Q Consensus 543 ~g~~l~~~~~~-~~~~~~~~~~-L~I~~v~~~D---~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~ 617 (808)
+|..+...... .....++... .....+...| +|.|+|.|.|..+....+..+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~------------------- 350 (457)
T 1hzh_H 290 DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK------------------- 350 (457)
T ss_dssp TTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCC-------------------
T ss_pred CCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEccc-------------------
Confidence 99988643221 1122223211 1111234455 9999999999866554443332210
Q ss_pred ccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCC--eEEEEEECCEEccCCCcEEEE--EeCCE
Q psy2145 618 LEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT--MRFEWFVNGVELKMGSRFHVQ--HDFGY 693 (808)
Q Consensus 618 l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~--p~i~W~~~g~~l~~~~~~~~~--~~~~~ 693 (808)
....+|.+.........+..|+ +.|.|.+ .|.|+ +.|.|+|||.+|.......+. .++.+
T Consensus 351 -------------~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~ 414 (457)
T 1hzh_H 351 -------------GQPREPQVYTLPPSRDELTKNQ-VSLTCLV--KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF 414 (457)
T ss_dssp -------------CCCBCCEEEEECCCGGGGGSSE-EEEEEEE--EEEBSSCCEEEEEETTEECCCEEECCCEECTTSCE
T ss_pred -------------CCCCCCeEEEECCCccccCCCc-EEEEEEE--EeEECCCCEEEEEECCEECcceeecCceeCCCCCE
Confidence 0113466665554444466666 9999999 67544 499999999998643222221 12222
Q ss_pred ---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 694 ---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 694 ---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.|.|.....+|+|.|+|.|.|..-.
T Consensus 415 ~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 415 FLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp EEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 35666666667899999999998643
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=297.85 Aligned_cols=275 Identities=19% Similarity=0.333 Sum_probs=215.1
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEee-CCEEccC-CCceEEEe-cCceEEEEEccCCCCCcEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH-NNVPIKS-GSRFTETN-NFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
||.|...|.+..+.+|++++|.|.+ .+.| .+.|.|+| ||..+.. ..++.... +.+..+|.|.+++.+|+|.|+|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~--~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEE--SSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEe--CCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence 6788999999999999999999999 4655 68999999 8888764 34454432 3456689999999999999999
Q ss_pred EEEeCcee-EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEE
Q psy2145 259 RAVNALGQ-AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEA 337 (808)
Q Consensus 259 ~a~n~~g~-~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 337 (808)
.|.|..|. ....+.|.|.. +|.+...+....+.+|+.+.|.|
T Consensus 80 ~~~n~~g~~~~~~~~l~v~~-------------------------------------~~~~~~~~~~~~~~~g~~v~l~C 122 (291)
T 1qz1_A 80 VVTAEDGTQSEATVNVKIFQ-------------------------------------KLMFKNAPTPQEFKEGEDAVIVC 122 (291)
T ss_dssp EEECTTSCEEEEEEEEEEEC-------------------------------------CSEEEECCSSEEEETTSCEEECC
T ss_pred EEEcCCCCeeEEEEEEEeec-------------------------------------cccccCCCCcccccCCCeEEEEE
Confidence 99998864 34566666653 56666667778899999999999
Q ss_pred EEeecCCCccEEEEEECCEeccCC--CcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE--EEEEEEEEecccc
Q psy2145 338 RLIPVGDSKLKVTWLRNGVPIQAS--NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV--TSSTLFVESKASL 413 (808)
Q Consensus 338 ~~~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~ 413 (808)
.+ .|.|.+.+.|+++|..+... .++....+ + .|.|.++..+|+|.|+|.|.|..+... ..+.|.|..+|.+
T Consensus 123 ~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~ 197 (291)
T 1qz1_A 123 DV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV 197 (291)
T ss_dssp EE--ECSSCCEEEEEETTSCSSTTCCTTEEECTT-S--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEE
T ss_pred Ee--ccCCCCEEEEEECCEEcccCCCceEEEccC-C--cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcc
Confidence 99 78899999999999887643 34443333 3 699999999999999999999775443 3455666544322
Q ss_pred cccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCC
Q psy2145 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRP 493 (808)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (808)
.
T Consensus 198 ~------------------------------------------------------------------------------- 198 (291)
T 1qz1_A 198 Q------------------------------------------------------------------------------- 198 (291)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CcCCCCccCCCeeeecCC-CcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC----CeEEEeeCcEEEEEECC
Q psy2145 494 EVDDNATKQRPVFTKPLQ-NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTKHDFGYVAMDLSH 568 (808)
Q Consensus 494 ~~~~~~~~~~P~f~~~~~-~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~----~~~~~~~~~~~~L~I~~ 568 (808)
.... ....+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+..+. ++....++ ..|.|.+
T Consensus 199 --------------~~~~~~~~~~~~g~~v~l~C~~--~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~--~~L~i~~ 260 (291)
T 1qz1_A 199 --------------ARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS--SELTIRN 260 (291)
T ss_dssp --------------ESCSEEEEETTSCCCEEEEEEE--EEESCCEEEEEETTEECCCC--CCSSEEECTTS--CEEEECS
T ss_pred --------------ccccccccccccCceEEEEEEE--EEeCCCcEEEEECCEECcCCCCCCcceEEcCCC--cEEEEEe
Confidence 1000 01147889999999999 789999999999999998764 44443333 3799999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 261 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 261 VDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 999999999999999999999999999874
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=326.27 Aligned_cols=381 Identities=13% Similarity=0.192 Sum_probs=234.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeC--CE---Eee--------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKN--GR---PVT--------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~--g~---~l~--------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++++|.|.+.+ .+ .+.|.|||+ |. .+. ...|+.+..+ .+..+
T Consensus 4 ~~~~~~~-~v~~G~~v~L~C~~~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 80 (457)
T 1hzh_H 4 LVQSGAE-VKKPGASVKVSCQASG--YRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAY 80 (457)
T ss_dssp EEECCCE-EECTTCCEEECEEEES--SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEE
T ss_pred EecCCce-EEcCCCCEEEEEEecC--ccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEE
Confidence 3456667 8999999999999984 44 678999984 32 121 1357777654 46679
Q ss_pred EEEcccCcCCCeeEEEEEEecCc------------ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccc
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVG------------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (808)
|.|.+++.+|+|.|+|.|.|..| .....+.|.|....
T Consensus 81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------- 129 (457)
T 1hzh_H 81 MELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS------------------------------- 129 (457)
T ss_dssp EEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC-------------------------------
T ss_pred EEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC-------------------------------
Confidence 99999999999999999999865 12344567665311
Q ss_pred cccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCc----eEEEEEccCCCCC
Q psy2145 178 ETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFG----FVALDIMQCLPED 252 (808)
Q Consensus 178 ~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D 252 (808)
..+|.+...+....+.+|+.++|.|.+.+ ..|. +.|.|+|+|..+...........++ ...|.|.++..+|
T Consensus 130 ---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 205 (457)
T 1hzh_H 130 ---TKGPSVFPLAPSSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT 205 (457)
T ss_dssp ---CBCCEEEEECCCSCCCTTCCEEEEEEEES-BBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT
T ss_pred ---CCCCeEEecCccccccCCCcEEEEEEEeE-EeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC
Confidence 23566655555556789999999999952 2354 8999999997653211111112222 1369999999999
Q ss_pred cEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee-ccCCCceE-eecC
Q psy2145 253 SGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIH-VAEN 330 (808)
Q Consensus 253 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~-~~~~~~~~-v~~G 330 (808)
|.|+|.|.|..+.......+.+...+..+. ...........+|.+ ..++.... +.+|
T Consensus 206 -G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~~~~~p~v~~~~p~~~~~~~~G 264 (457)
T 1hzh_H 206 -QTYICNVNHKPSNTKVDKKAEPKSCDKTHT--------------------CPPCPAPELLGGPSVFLFPPKPKDTLMIS 264 (457)
T ss_dssp -SCCEEEEEEGGGTEEEEEECCCCCSCSSCS--------------------CCSCCCCCCSSSCEEEEECCCHHHHHCTT
T ss_pred -ceEEEEEEeCCCCcceeEEecccCCCcccc--------------------cCCCCCccccCCceEEeECcCchhhcccC
Confidence 999999999877665554444332110000 000000001123443 44443332 6789
Q ss_pred CeEEEEEEEeecCCCc----cEEEEEECCEeccCCCcE-EEEeeCcEEE-EEEccCCCCC---CeEEEEEEEcCCcceEE
Q psy2145 331 QAAHFEARLIPVGDSK----LKVTWLRNGVPIQASNRV-STMHDFGYVA-LNFKYTYPED---SGTYTCRAVNELGEAVT 401 (808)
Q Consensus 331 ~~~~l~C~~~~~g~p~----~~v~W~~~g~~l~~~~~~-~~~~~~~~~~-L~I~~v~~~d---~G~Y~C~a~n~~g~~~~ 401 (808)
+.+.|.|.+ .|.|+ +.|+|+|+|.++...... .....++... .....+...| +|.|+|.|.|..+....
T Consensus 265 ~~v~L~C~~--~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~ 342 (457)
T 1hzh_H 265 RTPEVTCVV--VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI 342 (457)
T ss_dssp SCCCEEEEE--ECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCE
T ss_pred CceEEEEEE--EcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcc
Confidence 999999999 57654 399999999988654321 1222223211 1112234455 99999999987665433
Q ss_pred EEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhh
Q psy2145 402 SSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKI 481 (808)
Q Consensus 402 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (808)
...+.+..
T Consensus 343 ~~~v~~~~------------------------------------------------------------------------ 350 (457)
T 1hzh_H 343 EKTISKAK------------------------------------------------------------------------ 350 (457)
T ss_dssp EEEECCCC------------------------------------------------------------------------
T ss_pred eEEEEccc------------------------------------------------------------------------
Confidence 32222100
Q ss_pred cccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC--cEEEEEECCEecCCCCC--eEEEe
Q psy2145 482 RKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT--LKVEWFRNEKPLEDSSR--ITTKH 557 (808)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~--~~v~W~k~g~~l~~~~~--~~~~~ 557 (808)
....+|.+.........+..|+ +.|.|.+ .|.|+ +.|+|+|||..|..... +....
T Consensus 351 -----------------~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~ 410 (457)
T 1hzh_H 351 -----------------GQPREPQVYTLPPSRDELTKNQ-VSLTCLV--KGFYPSDIAVEWESNGQPENNYKTTPPVLDS 410 (457)
T ss_dssp -----------------CCCBCCEEEEECCCGGGGGSSE-EEEEEEE--EEEBSSCCEEEEEETTEECCCEEECCCEECT
T ss_pred -----------------CCCCCCeEEEECCCccccCCCc-EEEEEEE--EeEECCCCEEEEEECCEECcceeecCceeCC
Confidence 0011333333222222355666 9999999 56533 48999999999864321 11112
Q ss_pred eCcE---EEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 558 DFGY---VAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 558 ~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
++.+ ..|.|.....+|+|.|+|.|.|...
T Consensus 411 ~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 442 (457)
T 1hzh_H 411 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 442 (457)
T ss_dssp TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CCCEEEEEEEEEChHHccCCCeEEEEEEECCC
Confidence 2221 2466776666889999999999754
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=302.38 Aligned_cols=299 Identities=16% Similarity=0.227 Sum_probs=218.0
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEE
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEV 136 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 136 (808)
..+ .+.+|+.+.|.|... .+.|.+.|.|+|+|..+..+.|+.+..+++..+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 9 ~~~-~v~eg~~v~l~~~~~-~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~- 85 (312)
T 2y23_A 9 VVV-NVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS- 85 (312)
T ss_dssp CEE-EECTTCCEEEEEECS-SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-
T ss_pred eeE-EEecCCeEEEEEEEe-CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-
Confidence 344 789999999999998 37899999999999999989999998888888999999999999999999999888554
Q ss_pred EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecC-ceeecCCCeEEEEEEEeecCCCCe
Q psy2145 137 QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK-NCEIKEGQRAHFECRLIPVSDNTM 215 (808)
Q Consensus 137 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~~v~~G~~v~L~C~~~~~~~p~~ 215 (808)
+..|.|.....+.. +. ....+|.+...+. ...+.+|+.+.|.|.+. .+.|.+
T Consensus 86 s~~l~v~~~~~~~~-------------------------~~-~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~~~p~~ 138 (312)
T 2y23_A 86 SYLIDEEELKRLLA-------------------------LS-HEHKFPTVPVKSELAVEILEKGQVRFWMQAE-KLSGNA 138 (312)
T ss_dssp EEEECHHHHHHHHH-------------------------HH-HHHHSCBCCEEEEEEEEECSSSCEEEEEEES-CCCSSC
T ss_pred EEEEEEeeeeeeec-------------------------cc-ccCCCCccccccCCceEEeeCCCEEEEEEEE-eCCCCC
Confidence 55555431000000 00 0011444444433 78899999999999993 278899
Q ss_pred EEEEeeCCEEccCCCceEEEec--CceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhh
Q psy2145 216 KVEWFHNNVPIKSGSRFTETNN--FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSR 293 (808)
Q Consensus 216 ~v~W~~~g~~l~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~ 293 (808)
.+.|+++|..+..+.++.+..+ .+..+|.|.+++.+|+|.|+|.|.|..+.... .+.+.......
T Consensus 139 ~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~~~~~~~~----------- 205 (312)
T 2y23_A 139 KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS--TVVLVGDVFKK----------- 205 (312)
T ss_dssp EEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEE--EEEECTHHHHH-----------
T ss_pred EEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEE--EEEEcchhhhh-----------
Confidence 9999999999988887776643 56778999999999999999999875444333 33332110000
Q ss_pred hhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCcc-EEEEEECCEeccCCCcEEEEeeCcE
Q psy2145 294 LQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGY 372 (808)
Q Consensus 294 ~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~ 372 (808)
.+......+. ......+|.|..++. ..+.+|+.+.|.|.+ .|.|.+ .|.|+++|..+..+.++.+. ++.
T Consensus 206 --~~~~~~~~~~---~~~~~~~p~~~~~~~-~~v~~G~~~~l~C~~--~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~ 275 (312)
T 2y23_A 206 --LQKEAEFQRQ---EWIRKQGPHFVEYLS-WEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFK--DGI 275 (312)
T ss_dssp --HHHHHHHHHH---HHHHHHSSEEEEEEE-EEEETTTEEEEEEEE--ESCCSSCEEEEEETTEEEEEECCC------CE
T ss_pred --hccccccccc---chhhccCCceeecce-EEEeCCCEEEEEEEE--cCCCCCCEEEEeeCCEECCCCCcEEEE--CCE
Confidence 0000000000 000112466654443 678899999999999 788887 99999999999866666554 345
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 373 ~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
..|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 276 ~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 276 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 689999999999999999999999999988888764
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=312.18 Aligned_cols=383 Identities=12% Similarity=0.119 Sum_probs=236.2
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---ee--------------ccCcEEEEee--CCeEEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VT--------------IGHRFRPIHD--FGYVAL 110 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~--------------~~~r~~~~~~--~~~~~L 110 (808)
.+..|..+ .+.+|++++|.|.+.+...+...|.|||+ |.. +. ...|+.+..+ .+.++|
T Consensus 4 ~~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (475)
T 1iga_A 4 LLEQSGAE-VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM 82 (475)
T ss_pred eeccCCcE-EEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEE
Confidence 45567777 89999999999999852223578999995 321 11 1356766554 356789
Q ss_pred EEcccCcCCCeeEEEEEEecCcc------eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCC
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGF------AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 184 (808)
.|.+++.+|+|.|.|.+.|..|. ....+.|.|.... ..+|
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P 128 (475)
T 1iga_A 83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS----------------------------------PTSP 128 (475)
T ss_pred EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC----------------------------------CcCC
Confidence 99999999999999999997652 2234566665211 2345
Q ss_pred eEEeecCceeecCCCeEEEEEEEeecCCCC--eEEEEeeCCEEccCCCceEEE-ecCce----EEEEEccCCCCCcEEEE
Q psy2145 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNNVPIKSGSRFTET-NNFGF----VALDIMQCLPEDSGVYT 257 (808)
Q Consensus 185 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~~~g~~l~~~~~~~~~-~~~~~----~~L~I~~~~~~D~G~Y~ 257 (808)
.+..... ..+.+|+.++|.|.+.+ ..|. +.|.|++++..+......... ..++. ..|.|..+..+|+|.|+
T Consensus 129 ~i~~~~~-~~~~~g~~v~L~C~~~g-~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~ 206 (475)
T 1iga_A 129 KVFPLSL-CSTQPDGNVVIACLVQG-FFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVT 206 (475)
T ss_pred eEEecCc-cccCCCCeEEEEEEEee-ecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEE
Confidence 4443322 22368999999999953 2354 499999988643211000011 11121 25889999999999999
Q ss_pred EEEEeCceeEEEEEEEE--EeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee-ccCCCceEeecCCeEE
Q psy2145 258 CRAVNALGQAVTSGNLL--VHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAH 334 (808)
Q Consensus 258 C~a~n~~g~~~~~~~l~--V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~G~~~~ 334 (808)
|.|.|..|. .....+. |...+.+. + ........... .+|.+ ..++....+.+|+.+.
T Consensus 207 C~a~n~~~~-~~~~~v~l~V~~~~~~~-~-----------------~~~~~~~~~~~-~~p~v~~~~p~~~~~~~G~~v~ 266 (475)
T 1iga_A 207 CHVKHYTNP-SQDVTVPCPVPSTPPTP-S-----------------PSTPPTPSPSC-CHPRLSLHRPALEDLLLGSEAN 266 (475)
T ss_pred EEEEECCCC-ceeeeEecccccCcccc-c-----------------ccccccCCCCC-CCcEEEEcCCChHHhccCCceE
Confidence 999998763 2233333 31110000 0 00000000000 23433 4444444468999999
Q ss_pred EEEEEeecCCCc---cEEEEEECCEeccCCCcE-EEEe-eC---cEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy2145 335 FEARLIPVGDSK---LKVTWLRNGVPIQASNRV-STMH-DF---GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLF 406 (808)
Q Consensus 335 l~C~~~~~g~p~---~~v~W~~~g~~l~~~~~~-~~~~-~~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 406 (808)
|.|.+ .|.++ +.|.| ++..+...... .... ++ ...+|.|.++..+|+|.|+|.|.|..|.......|.
T Consensus 267 L~C~~--~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~ 342 (475)
T 1iga_A 267 LTCTL--TGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLS 342 (475)
T ss_pred EEEEE--EcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEee
Confidence 99999 56543 69999 55444322111 1111 11 234799999999999999999999988764444443
Q ss_pred EEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhccccc
Q psy2145 407 VESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLED 486 (808)
Q Consensus 407 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (808)
+..
T Consensus 343 ~~~----------------------------------------------------------------------------- 345 (475)
T 1iga_A 343 KSG----------------------------------------------------------------------------- 345 (475)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCC-C-CcEEEEEECCEecCCCCCeE---EEe---e
Q psy2145 487 TEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD-P-TLKVEWFRNEKPLEDSSRIT---TKH---D 558 (808)
Q Consensus 487 ~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~-P-~~~v~W~k~g~~l~~~~~~~---~~~---~ 558 (808)
...+|.+.........+.+|+.+.|.|.+ .|. | .+.|+|+|||+.|..+.... ... .
T Consensus 346 -------------~~~~P~v~~~~~~~~~v~~g~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 410 (475)
T 1iga_A 346 -------------NTFRPEVHLLPPPSEELALNELVTLTCLA--RGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQG 410 (475)
T ss_pred -------------CCCCCeEEEECCChHHhccCCceEEEEEE--eeeECCCCEEEEEECCEECCCCceeecccccccCCC
Confidence 00123332222222236789999999999 665 3 35999999999987653111 111 1
Q ss_pred Cc----EEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 559 FG----YVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 559 ~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
+| ...|.|.....+|.|.|+|.|.|....
T Consensus 411 ~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 411 TTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred CCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 22 135888888889999999999998654
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=312.09 Aligned_cols=380 Identities=15% Similarity=0.140 Sum_probs=235.7
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc-----------------CCCceEEEec--CceEEEEEc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK-----------------SGSRFTETNN--FGFVALDIM 246 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~ 246 (808)
..+..+.+.+|++|+|.|.+.+...+...+.|||+ |..+. ...|+.+..+ .+..+|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (475)
T 1iga_A 6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS 85 (475)
T ss_pred ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence 35667889999999999999422123678999995 32110 1245555443 355689999
Q ss_pred cCCCCCcEEEEEEEEeCcee------EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeecc
Q psy2145 247 QCLPEDSGVYTCRAVNALGQ------AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ 320 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~g~------~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~ 320 (808)
+++.+|+|.|.|.+.|..|. ....+.|.|.... ..+|.+..
T Consensus 86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------~~~P~i~~ 132 (475)
T 1iga_A 86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS---------------------------------PTSPKVFP 132 (475)
T ss_pred CCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC---------------------------------CcCCeEEe
Confidence 99999999999999997652 2234577775311 12343332
Q ss_pred CCCceEeecCCeEEEEEEEeecCC-Cc-c-EEEEEECCEeccCCCcEEEE--eeCc---EEEEEEccCCCCCCeEEEEEE
Q psy2145 321 PMRDIHVAENQAAHFEARLIPVGD-SK-L-KVTWLRNGVPIQASNRVSTM--HDFG---YVALNFKYTYPEDSGTYTCRA 392 (808)
Q Consensus 321 ~~~~~~v~~G~~~~l~C~~~~~g~-p~-~-~v~W~~~g~~l~~~~~~~~~--~~~~---~~~L~I~~v~~~d~G~Y~C~a 392 (808)
.. ...+.+|+.+.|.|.+ .|. |. + .|.|+++|............ .++. ...|.|..+..+|+|.|+|.|
T Consensus 133 ~~-~~~~~~g~~v~L~C~~--~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a 209 (475)
T 1iga_A 133 LS-LCSTQPDGNVVIACLV--QGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHV 209 (475)
T ss_pred cC-ccccCCCCeEEEEEEE--eeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEE
Confidence 21 1223689999999999 565 55 4 99999998543211000011 1111 135889999889999999999
Q ss_pred EcCCcceEEEEEEE--EEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEe
Q psy2145 393 VNELGEAVTSSTLF--VESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIIT 470 (808)
Q Consensus 393 ~n~~g~~~~~~~l~--V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 470 (808)
.|..|.. .+..+. |...+... +.
T Consensus 210 ~n~~~~~-~~~~v~l~V~~~~~~~---------------~~--------------------------------------- 234 (475)
T 1iga_A 210 KHYTNPS-QDVTVPCPVPSTPPTP---------------SP--------------------------------------- 234 (475)
T ss_pred EECCCCc-eeeeEecccccCcccc---------------cc---------------------------------------
Confidence 9988742 222333 21110000 00
Q ss_pred cccCCchhhhhcccccCCCCCCCCcCCCCccCCCee-eecCCCcccccCCCceEEEEEEeeCCCCC---cEEEEEECCEe
Q psy2145 471 DTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVF-TKPLQNIDAVEEGKNAHFSCRLIPVGDPT---LKVEWFRNEKP 546 (808)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g~P~---~~v~W~k~g~~ 546 (808)
.+........ .+|.+ ..++... .+.+|+.+.|.|.+ .|.++ +.|+| ++..
T Consensus 235 --------------------~~~~~~~~~~-~~p~v~~~~p~~~-~~~~G~~v~L~C~~--~g~~p~~~~~i~W--~~~~ 288 (475)
T 1iga_A 235 --------------------STPPTPSPSC-CHPRLSLHRPALE-DLLLGSEANLTCTL--TGLRDASGVTFTW--TPSS 288 (475)
T ss_pred --------------------cccccCCCCC-CCcEEEEcCCChH-HhccCCceEEEEEE--EcccCCCceEEEE--CCCC
Confidence 0000000000 12332 3332222 36899999999999 56544 68999 5444
Q ss_pred cCCCCC-eEEEe-eC---cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCC
Q psy2145 547 LEDSSR-ITTKH-DF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQP 621 (808)
Q Consensus 547 l~~~~~-~~~~~-~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~ 621 (808)
+..... ..... ++ ....|.|.++..+|+|.|+|.|.|..|.......|.+..
T Consensus 289 ~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~----------------------- 345 (475)
T 1iga_A 289 GKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG----------------------- 345 (475)
T ss_pred cCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCC-----------------------
Confidence 432211 11111 11 223699999999999999999999999865555553311
Q ss_pred CCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-C-CeEEEEEECCEEccCCCcE----EEE---EeCC
Q psy2145 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-P-TMRFEWFVNGVELKMGSRF----HVQ---HDFG 692 (808)
Q Consensus 622 ~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P-~p~i~W~~~g~~l~~~~~~----~~~---~~~~ 692 (808)
...+|.+.........+.+|+.+.|.|.+ .|. | .+.|.|+|||..|..+... ... .++.
T Consensus 346 ----------~~~~P~v~~~~~~~~~v~~g~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt 413 (475)
T 1iga_A 346 ----------NTFRPEVHLLPPPSEELALNELVTLTCLA--RGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTT 413 (475)
T ss_pred ----------CCCCCeEEEECCChHHhccCCceEEEEEE--eeeECCCCEEEEEECCEECCCCceeecccccccCCCCCc
Confidence 01246655554443457889999999999 675 3 3599999999999765411 111 1111
Q ss_pred ---EEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 693 ---YVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 693 ---~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+.|.|.....+|.|.|+|.|.|....
T Consensus 414 ~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 414 FAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred EEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 246888888888999999999999754
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=314.77 Aligned_cols=298 Identities=22% Similarity=0.368 Sum_probs=149.3
Q ss_pred CCceEeecCCeEEEEEEEeecCC-CccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGD-SKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
+....+.+|+.+.|.|.+ .+. |.+.|.|+|+|..+..+.++.+. ..+|.|.++..+|+|.|+|.|.|. |...
T Consensus 15 ~~~~~v~~G~~v~l~C~~--~~~~p~~~v~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~ 87 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPP--PGGGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLT-QRVL 87 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeC--CCCCCCcceEEEECCeeCCCcccEEec----cceEEEeecccccCEEEEEEEEeC-CeEE
Confidence 667889999999999998 555 67899999999998877666542 237999999999999999999999 7777
Q ss_pred EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhh
Q psy2145 401 TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480 (808)
Q Consensus 401 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (808)
..+.|.|...+...........
T Consensus 88 ~~~~l~V~~~~~~~~~~~~~~~---------------------------------------------------------- 109 (334)
T 1ry7_B 88 CHFSVRVTDAPSSGDDEDGEDE---------------------------------------------------------- 109 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEeccCccccccccccc----------------------------------------------------------
Confidence 7788888765422100000000
Q ss_pred hcccccCCCCCCCCcCCCCccCCCeeeecCC---CcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE-EE
Q psy2145 481 IRKLEDTEPHKRPEVDDNATKQRPVFTKPLQ---NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TK 556 (808)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~---~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~-~~ 556 (808)
.........+|.|..+.. ....+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+....++. ..
T Consensus 110 -------------~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~ 174 (334)
T 1ry7_B 110 -------------AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA--AGNPTPSISWLKNGREFRGEHRIGGIK 174 (334)
T ss_dssp ----------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC--CCSSCCEEECCBTTBCCCTTSSTTCCC
T ss_pred -------------cccccccCCCCEEeccccccceeEEecCCCcEEEEEEc--cCCCCCeEEEEECCEECccccccccee
Confidence 000000112444444321 11257899999999998 799999999999999887654431 11
Q ss_pred eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC
Q psy2145 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636 (808)
Q Consensus 557 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P 636 (808)
...+...|.|.+++.+|+|.|+|.|.|..|....++.|.|...+. .+|
T Consensus 175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~--------------------------------~~p 222 (334)
T 1ry7_B 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP--------------------------------HRP 222 (334)
T ss_dssp CCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC--------------------------------SSC
T ss_pred cccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC--------------------------------CCC
Confidence 222333799999999999999999999999999999999986432 123
Q ss_pred eEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEE----CCEEccCCCcE--EEEEe-------CCEEEEEEccCCC
Q psy2145 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV----NGVELKMGSRF--HVQHD-------FGYVTLDITKCVP 703 (808)
Q Consensus 637 ~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~----~g~~l~~~~~~--~~~~~-------~~~~~L~I~~v~~ 703 (808)
.+.........+.+|+.+.|.|.+ .|.|.|.|.|+| ||..+..+.+. .+... ...+.|.|.++..
T Consensus 223 ~~~~~~~~~~~~~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 300 (334)
T 1ry7_B 223 ILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTF 300 (334)
T ss_dssp BCCTTCSCCEEEESSCCEEECCCC--BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCT
T ss_pred ceEecCCCceEEeCCCCEEEEEEE--ecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCH
Confidence 333333334568899999999999 799999999999 88888755431 22111 1234799999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEeCCC
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~ 733 (808)
+|+|.|+|.|.|.+|....++.|.|...|.
T Consensus 301 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 301 EDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp TSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred HHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 999999999999999999999999998764
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=335.09 Aligned_cols=379 Identities=12% Similarity=0.159 Sum_probs=236.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe---e--------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV---T--------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l---~--------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.|.|||+ |..+ . ...|+.+..+ ++..+|.
T Consensus 3 l~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 81 (434)
T 1igy_B 3 LQESGAE-LARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIH 81 (434)
T ss_dssp EECCCCC-EECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEE
T ss_pred eECCCCe-EecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEE
Confidence 4556777 89999999999999852124678999996 3321 1 1347766544 3456899
Q ss_pred EcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecC
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK 191 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 191 (808)
|.+++.+|+|.|+|.|.|..+.....+.|.|.... ..+|.+.....
T Consensus 82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~i~~~~~ 127 (434)
T 1igy_B 82 LSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK----------------------------------TTPPSVYPLAP 127 (434)
T ss_dssp ECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSC----------------------------------CBCCCEEEECC
T ss_pred ECCCChHHCEEEEEEEEccccccCCceEEEEccCC----------------------------------CCCCeEEEcCC
Confidence 99999999999999999865544455677775311 23455544333
Q ss_pred ceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEeCceeE
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVNALGQA 267 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 267 (808)
...+.+|+.++|.|.+.+ ..|.+ .|.|+|+|..+...........+. ...|.|.++..+| |.|+|.|.|..|..
T Consensus 128 ~~~~~~G~~v~L~C~~~g-~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~ 205 (434)
T 1igy_B 128 GSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST 205 (434)
T ss_dssp CCCCCCTTEEEEEEEEEE-EBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred ccccCCCCcEEEEEEEee-ecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence 445689999999999953 23655 999999987632100000011111 1369999999999 99999999998875
Q ss_pred EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceE-eecCCeEEEEEEEeecCCC-
Q psy2145 268 VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIH-VAENQAAHFEARLIPVGDS- 345 (808)
Q Consensus 268 ~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~G~~~~l~C~~~~~g~p- 345 (808)
.....+.+.... ..+ .. .. ....+..+..++.... +.+|+.+.|.|.+ .|.+
T Consensus 206 ~~~~~~~~~~~~-~~v--------------------~~--~~-~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~--~g~~p 259 (434)
T 1igy_B 206 KVDKKIVPRDCG-CKP--------------------CI--CT-VPEVSSVFIFPPKPKDTLLITVTPKVTCVV--VDISK 259 (434)
T ss_dssp CEEEECCCCCCC-CCC--------------------CC--CC-CSSSCCEEEECCCHHHHHSTTSCCEEEEEE--CCCCS
T ss_pred cceeeccCCCCC-Ccc--------------------cc--CC-CCcCcEEEEeCCChHHhcccCCCcEEEEEE--ecccc
Confidence 544444332100 000 00 00 0001233344433332 7899999999999 5663
Q ss_pred ---ccEEEEEECCEeccCCCcEEE--EeeC---cEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccc
Q psy2145 346 ---KLKVTWLRNGVPIQASNRVST--MHDF---GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDT 417 (808)
Q Consensus 346 ---~~~v~W~~~g~~l~~~~~~~~--~~~~---~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~ 417 (808)
.+.|.|+|+|..+........ ..++ ...+|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 260 ~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~--------- 330 (434)
T 1igy_B 260 DDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKT--------- 330 (434)
T ss_dssp SCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCC---------
T ss_pred CCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEecc---------
Confidence 468999999987754321111 1111 12369999999999999999999988864221111110
Q ss_pred cchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCC
Q psy2145 418 QNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDD 497 (808)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (808)
T Consensus 331 -------------------------------------------------------------------------------- 330 (434)
T 1igy_B 331 -------------------------------------------------------------------------------- 330 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCCCeeeecCCCcccccCCCceEEEEEEeeCC-CC-CcEEEEEECCEecCCCCCeEE--EeeCcE---EEEEECCCC
Q psy2145 498 NATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG-DP-TLKVEWFRNEKPLEDSSRITT--KHDFGY---VAMDLSHVR 570 (808)
Q Consensus 498 ~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g-~P-~~~v~W~k~g~~l~~~~~~~~--~~~~~~---~~L~I~~v~ 570 (808)
.....+|.+....... ...+|+.+.|.|.+ .| .| .+.|+|+|||+.+........ ..++.+ ..|.|....
T Consensus 331 ~~~~~~P~v~~~~~~~-~~~~~~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~ 407 (434)
T 1igy_B 331 KGKPRAPQVYTIPPPK-EQMAKDKVSLTCMI--TDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSN 407 (434)
T ss_dssp CSCCBCCCCEEECCCS-SSSSSSEEEEEEEE--EEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHH
T ss_pred CCCCcCCEEEEECCCH-HHhcCCcEEEEEEE--EeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchh
Confidence 0011234333322222 13457789999999 56 34 358999999998854321111 112211 357888887
Q ss_pred CCCCEEEEEEEEeCCe
Q psy2145 571 AEDEGIYICKATNALG 586 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G 586 (808)
.+|+|.|+|.|.|...
T Consensus 408 ~~~~g~YtC~a~n~~l 423 (434)
T 1igy_B 408 WEAGNTFTCSVLHEGL 423 (434)
T ss_dssp HHTTCCEEEEEEETTS
T ss_pred ccCCCEEEEEEEcCCC
Confidence 7899999999999854
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=293.86 Aligned_cols=268 Identities=19% Similarity=0.203 Sum_probs=203.6
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
.+|.|...+....+.+|+.+.|.|.+ .+ .|.|+++|..+ .. ...++ .+|.|.++..+|+|.|+|.|.
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~--~~----~i~W~~~~~~~----~~-~~~~~--~~L~i~~~~~~d~G~Y~C~~~ 77 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCID--PD----FVRWTFKTYFN----EM-VENKK--NEWIQEKAEATRTGTYTCSNS 77 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEEC--TT----EEEEEEECSSS----CE-EEECS--SEEEETTCCGGGCEEEEEEES
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECC--CC----cEEEecCCcce----ee-ecCCC--ceEEEeccCHHhCeEEEEEee
Confidence 47888877888899999999999998 55 89999999877 11 12222 489999999999999999999
Q ss_pred cCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEeccc
Q psy2145 394 NELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473 (808)
Q Consensus 394 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (808)
| |. ..++.|.|..++.+.
T Consensus 78 n--g~-~~~~~l~V~~~~~~~----------------------------------------------------------- 95 (290)
T 2o26_X 78 N--GL-TSSIYVFVRDPAKLF----------------------------------------------------------- 95 (290)
T ss_dssp S--SC-EEEEEEEEECSSCCB-----------------------------------------------------------
T ss_pred C--Cc-cEEEEEEEeCCCccc-----------------------------------------------------------
Confidence 9 54 666788887543211
Q ss_pred CCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC-cEEEE-EECCEecCCCC
Q psy2145 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEW-FRNEKPLEDSS 551 (808)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~-~~v~W-~k~g~~l~~~~ 551 (808)
....+. .+.+|+.+.|.|.+ .+ |. +.++| ++||..+..+.
T Consensus 96 ----------------------------------~~~~~~-~~~~g~~v~l~C~~--~~-p~~~~v~W~~~~g~~l~~~~ 137 (290)
T 2o26_X 96 ----------------------------------LVGLPL-FGKEDSDALVRCPL--TD-PQVSQYSLIECDGKSLPTDL 137 (290)
T ss_dssp ----------------------------------CCCCCE-EEETTSCEEECCCB--SC-CSCEEEEEEETTSCCCCTTC
T ss_pred ----------------------------------ccccce-EEecCCeEEEeCcC--CC-CCCceEEEEeCCCcCCCCCC
Confidence 111111 47789999999998 55 77 99999 57999988776
Q ss_pred CeEEEeeCcEEEEEECCCCCCCCE-EEEEEEEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCC
Q psy2145 552 RITTKHDFGYVAMDLSHVRAEDEG-IYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEP 629 (808)
Q Consensus 552 ~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~ 629 (808)
++...... .|.|.++..+|+| .|+|.|.|..|...+ .+.|.|...+.
T Consensus 138 ~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~---------------------------- 186 (290)
T 2o26_X 138 TFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK---------------------------- 186 (290)
T ss_dssp EEEEETTT---EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCC----------------------------
T ss_pred ceeeCCCC---CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCC----------------------------
Confidence 66555443 6999999999999 999999999666443 47777763211
Q ss_pred ccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEc----cCCCcEEEE---EeCCEEEEEEccC
Q psy2145 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVEL----KMGSRFHVQ---HDFGYVTLDITKC 701 (808)
Q Consensus 630 ~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l----~~~~~~~~~---~~~~~~~L~I~~v 701 (808)
.+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|. |.|+|+|..+ .......+. .......|.|.++
T Consensus 187 ----~~P~i~~~~~~-~~v~~G~~v~l~C~~--~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 259 (290)
T 2o26_X 187 ----AIPVVSVPETS-HLLKKGDTFTVVCTI--KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA 259 (290)
T ss_dssp ----SCCEEECSCSB-CCCCTTCCEEEEEEE--EESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSC
T ss_pred ----CCCccccCCCc-ceEecCCcEEEEEEE--ecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCC
Confidence 24666555443 478999999999999 6999996 9999999873 333333332 1233568999999
Q ss_pred CCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 702 VPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
..+|+|.|+|.|.|.+|..+.++.|.|..+|
T Consensus 260 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 260 RVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp CSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred CcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 9999999999999999999999999998765
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=330.24 Aligned_cols=376 Identities=13% Similarity=0.179 Sum_probs=234.7
Q ss_pred ecCceeecCCCeEEEEEEEeecCC--CCeEEEEeeC--CEEcc-----------------CCCceEEEec--CceEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSD--NTMKVEWFHN--NVPIK-----------------SGSRFTETNN--FGFVALDI 245 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I 245 (808)
.+..+.+.+|++|+|.|.+. +. +.+.|.|||+ |..+. ...|+.+..+ ++..+|.|
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (434)
T 1igy_B 5 ESGAELARPGASVKMSCKAS--GYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL 82 (434)
T ss_dssp CCCCCEECTBCCEEECCEEC--SSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred CCCCeEecCCCCEEEEEEcc--CCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence 44567899999999999994 44 3678999996 33210 1235554432 34558999
Q ss_pred ccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCce
Q psy2145 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDI 325 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~ 325 (808)
.+++.+|+|.|+|.|.|..+.....+.|.|.... ..+|.+.......
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~---------------------------------~~~P~i~~~~~~~ 129 (434)
T 1igy_B 83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAK---------------------------------TTPPSVYPLAPGS 129 (434)
T ss_dssp CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSC---------------------------------CBCCCEEEECCCC
T ss_pred CCCChHHCEEEEEEEEccccccCCceEEEEccCC---------------------------------CCCCeEEEcCCcc
Confidence 9999999999999999865444455677775311 1234333222223
Q ss_pred EeecCCeEEEEEEEeecCC-Ccc-EEEEEECCEeccCCCcEEEEeeCc---EEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 326 HVAENQAAHFEARLIPVGD-SKL-KVTWLRNGVPIQASNRVSTMHDFG---YVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 326 ~v~~G~~~~l~C~~~~~g~-p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
.+.+|+.+.|.|.+ .|. |.+ .|.|+++|..+...........+. ...|.|..+..+| |.|+|.|.|..|...
T Consensus 130 ~~~~G~~v~L~C~~--~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~ 206 (434)
T 1igy_B 130 AAQTNSMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK 206 (434)
T ss_dssp CCCCTTEEEEEEEE--EEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC
T ss_pred ccCCCCcEEEEEEE--eeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc
Confidence 35789999999999 454 665 999999997532100000001111 1369999999889 999999999998764
Q ss_pred EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhh
Q psy2145 401 TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEK 480 (808)
Q Consensus 401 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (808)
....+.+.... .. + ..
T Consensus 207 ~~~~~~~~~~~-~~--------------------v----------~~--------------------------------- 222 (434)
T 1igy_B 207 VDKKIVPRDCG-CK--------------------P----------CI--------------------------------- 222 (434)
T ss_dssp EEEECCCCCCC-CC--------------------C----------CC---------------------------------
T ss_pred ceeeccCCCCC-Cc--------------------c----------cc---------------------------------
Confidence 44333322100 00 0 00
Q ss_pred hcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCC----CcEEEEEECCEecCCCCCeEE-
Q psy2145 481 IRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP----TLKVEWFRNEKPLEDSSRITT- 555 (808)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P----~~~v~W~k~g~~l~~~~~~~~- 555 (808)
. .....|+.++.++.....+.+|+.+.|.|.+ .|.| .+.|+|+|+|..+........
T Consensus 223 -----------~-----~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~--~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~ 284 (434)
T 1igy_B 223 -----------C-----TVPEVSSVFIFPPKPKDTLLITVTPKVTCVV--VDISKDDPEVQFSWFVDNVEVHTAQTQPRE 284 (434)
T ss_dssp -----------C-----CCSSSCCEEEECCCHHHHHSTTSCCEEEEEE--CCCCSSCCCCCBCBBSSSCCBCCCSCCCCC
T ss_pred -----------C-----CCCcCcEEEEeCCChHHhcccCCCcEEEEEE--eccccCCCCeEEEEEeCCcccCCcccCcce
Confidence 0 0000022333333222127899999999999 6763 468999999988754321111
Q ss_pred EeeC----cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCcc
Q psy2145 556 KHDF----GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631 (808)
Q Consensus 556 ~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~ 631 (808)
...+ ....|.|.++..+|+|.|+|.|.|..|.......+.+.. .
T Consensus 285 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~--------------------------------~ 332 (434)
T 1igy_B 285 EQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTK--------------------------------G 332 (434)
T ss_dssp CCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCC--------------------------------S
T ss_pred eCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccC--------------------------------C
Confidence 0111 123699999999999999999999988653222221100 1
Q ss_pred ccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-C-CeEEEEEECCEEccCCCcEEE--EEeCC---EEEEEEccCCCC
Q psy2145 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-P-TMRFEWFVNGVELKMGSRFHV--QHDFG---YVTLDITKCVPA 704 (808)
Q Consensus 632 ~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P-~p~i~W~~~g~~l~~~~~~~~--~~~~~---~~~L~I~~v~~~ 704 (808)
...+|.+....... ...+|+.++|.|.+ .|. | .+.|.|+|||.+|........ ..++. .+.|.|.....+
T Consensus 333 ~~~~P~v~~~~~~~-~~~~~~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~ 409 (434)
T 1igy_B 333 KPRAPQVYTIPPPK-EQMAKDKVSLTCMI--TDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWE 409 (434)
T ss_dssp CCBCCCCEEECCCS-SSSSSSEEEEEEEE--EEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHH
T ss_pred CCcCCEEEEECCCH-HHhcCCcEEEEEEE--EeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhcc
Confidence 11346655544432 24467789999999 574 4 359999999998854221111 11222 246788887778
Q ss_pred CcEEEEEEEEeCCcc
Q psy2145 705 DSGVYMCKAINRAGE 719 (808)
Q Consensus 705 D~G~Y~C~A~N~~G~ 719 (808)
|+|.|+|.|.|....
T Consensus 410 ~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 410 AGNTFTCSVLHEGLH 424 (434)
T ss_dssp TTCCEEEEEEETTSG
T ss_pred CCCEEEEEEEcCCCC
Confidence 899999999998653
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=284.39 Aligned_cols=268 Identities=16% Similarity=0.200 Sum_probs=203.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.+..+.+|++++|.|.+ .+ .|.|+|+|..+ ......+ .+|.|.+++.+|+|.|+|.|
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~--~~----~i~W~~~~~~~-----~~~~~~~--~~L~i~~~~~~d~G~Y~C~~ 76 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCID--PD----FVRWTFKTYFN-----EMVENKK--NEWIQEKAEATRTGTYTCSN 76 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEEC--TT----EEEEEEECSSS-----CEEEECS--SEEEETTCCGGGCEEEEEEE
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECC--CC----cEEEecCCcce-----eeecCCC--ceEEEeccCHHhCeEEEEEe
Confidence 457899888888999999999999998 44 89999999877 1122222 38999999999999999999
Q ss_pred EeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEe
Q psy2145 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI 340 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~ 340 (808)
.| |. ..++.|.|..++ .+...+....+.+|+.+.|.|.+
T Consensus 77 ~n--g~-~~~~~l~V~~~~-------------------------------------~~~~~~~~~~~~~g~~v~l~C~~- 115 (290)
T 2o26_X 77 SN--GL-TSSIYVFVRDPA-------------------------------------KLFLVGLPLFGKEDSDALVRCPL- 115 (290)
T ss_dssp SS--SC-EEEEEEEEECSS-------------------------------------CCBCCCCCEEEETTSCEEECCCB-
T ss_pred eC--Cc-cEEEEEEEeCCC-------------------------------------cccccccceEEecCCeEEEeCcC-
Confidence 99 54 667788886532 22244556778899999999998
Q ss_pred ecCCCc-cEEEE-EECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCe-EEEEEEEcCCcceEE-EEEEEEEeccccccc
Q psy2145 341 PVGDSK-LKVTW-LRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSG-TYTCRAVNELGEAVT-SSTLFVESKASLQLD 416 (808)
Q Consensus 341 ~~g~p~-~~v~W-~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~ 416 (808)
.+ |. +.++| ++||..+..+.++....++ .|.|.++..+|+| .|+|.|.|..|...+ .+.|.|...+
T Consensus 116 -~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~----- 185 (290)
T 2o26_X 116 -TD-PQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI----- 185 (290)
T ss_dssp -SC-CSCEEEEEEETTSCCCCTTCEEEEETTT---EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC-----
T ss_pred -CC-CCCceEEEEeCCCcCCCCCCceeeCCCC---CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC-----
Confidence 54 77 99999 5689988877666554443 6999999999999 999999998655433 3667765311
Q ss_pred ccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcC
Q psy2145 417 TQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVD 496 (808)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (808)
T Consensus 186 -------------------------------------------------------------------------------- 185 (290)
T 2o26_X 186 -------------------------------------------------------------------------------- 185 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEe----cCCCCCeEEE---eeCcEEEEEECC
Q psy2145 497 DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKP----LEDSSRITTK---HDFGYVAMDLSH 568 (808)
Q Consensus 497 ~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~----l~~~~~~~~~---~~~~~~~L~I~~ 568 (808)
..+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+. |+|+|+|.. +......... .......|.|.+
T Consensus 186 ----~~~P~i~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 258 (290)
T 2o26_X 186 ----KAIPVVSVPETSH-LLKKGDTFTVVCTI--KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258 (290)
T ss_dssp ----CSCCEEECSCSBC-CCCTTCCEEEEEEE--EESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESS
T ss_pred ----CCCCccccCCCcc-eEecCCcEEEEEEE--ecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcC
Confidence 1245555544444 68899999999999 6889986 999999987 3433332222 112344899999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~ 599 (808)
+..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 259 v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 289 (290)
T 2o26_X 259 ARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289 (290)
T ss_dssp CCSSSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CCcccCeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence 9999999999999999999999999988764
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=304.76 Aligned_cols=304 Identities=19% Similarity=0.298 Sum_probs=147.9
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
+.+.+..|.++ .+.+|+.++|.|.+.+ ..|.+.|.|+|+|..|..+.|+.+. ..+|.|.+++.+|+|.|+|.|.
T Consensus 8 p~p~~~~~~~~-~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~ 81 (334)
T 1ry7_B 8 PGPEPGQQEQL-VFGSGDAVELSCPPPG-GGPMGPTVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQR 81 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCcCcE-EEecCCcEEEEeeCCC-CCCCcceEEEECCeeCCCcccEEec----cceEEEeecccccCEEEEEEEE
Confidence 34455568888 8999999999999985 3467899999999999877776642 2379999999999999999999
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeec----CceeecCCCeEEEE
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL----KNCEIKEGQRAHFE 204 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~----~~~~v~~G~~v~L~ 204 (808)
|. |.....+.|.|...+........... .++ ......+|.|..+. ....+.+|+.++|.
T Consensus 82 n~-~~~~~~~~l~V~~~~~~~~~~~~~~~------~~~----------~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~ 144 (334)
T 1ry7_B 82 LT-QRVLCHFSVRVTDAPSSGDDEDGEDE------AED----------TGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144 (334)
T ss_dssp ------------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEE
T ss_pred eC-CeEEEEEEEEEeccCccccccccccc------ccc----------ccccCCCCEEeccccccceeEEecCCCcEEEE
Confidence 98 87777888887654321100000000 000 00012345554322 23678899999999
Q ss_pred EEEeecCCCCeEEEEeeCCEEccCCCceE-EEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccc
Q psy2145 205 CRLIPVSDNTMKVEWFHNNVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283 (808)
Q Consensus 205 C~~~~~~~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~ 283 (808)
|.+ .+.|.+.|.|+|+|..+....++. .....+..+|.|.+++.+|+|.|+|.|.|..|....++.|.|...+
T Consensus 145 C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~---- 218 (334)
T 1ry7_B 145 CPA--AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS---- 218 (334)
T ss_dssp CCC--CCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred EEc--cCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC----
Confidence 998 578889999999999987655431 1122233489999999999999999999999998888899887532
Q ss_pred cccccchhhhhhhhhccccccccccccccCCCCeecc-CCCceEeecCCeEEEEEEEeecCCCccEEEEEE----CCEec
Q psy2145 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQ-PMRDIHVAENQAAHFEARLIPVGDSKLKVTWLR----NGVPI 358 (808)
Q Consensus 284 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~----~g~~l 358 (808)
..+|.+.. .+....+.+|+.+.|.|.+ .|.|.+.|.|++ ||..+
T Consensus 219 -----------------------------~~~p~~~~~~~~~~~~~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~g~~~ 267 (334)
T 1ry7_B 219 -----------------------------PHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKV 267 (334)
T ss_dssp -----------------------------CSSCBCCTTCSCCEEEESSCCEEECCCC--BCSSCEEEEEEECCCGGGCSB
T ss_pred -----------------------------CCCCceEecCCCceEEeCCCCEEEEEEE--ecCCCCeEEEEECCcCCCccc
Confidence 12344433 3456788999999999998 799999999999 78777
Q ss_pred cCCCc--EEEEee-------CcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEeccc
Q psy2145 359 QASNR--VSTMHD-------FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKAS 412 (808)
Q Consensus 359 ~~~~~--~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 412 (808)
..+.+ +.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|...+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 268 GPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp CTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred cCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 65432 111111 1223699999999999999999999999999999999987653
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=300.37 Aligned_cols=280 Identities=20% Similarity=0.253 Sum_probs=175.4
Q ss_pred CCCceEeecCCeEEEEEEEeecCCCc-----------cEEEEEECCE------ecc---CCCcEEEEeeCcEEEEEEccC
Q psy2145 321 PMRDIHVAENQAAHFEARLIPVGDSK-----------LKVTWLRNGV------PIQ---ASNRVSTMHDFGYVALNFKYT 380 (808)
Q Consensus 321 ~~~~~~v~~G~~~~l~C~~~~~g~p~-----------~~v~W~~~g~------~l~---~~~~~~~~~~~~~~~L~I~~v 380 (808)
....+.+.+|+.+.|.|.+ .+.|. +.|.|+|+|. .+. ...++ ...++ +|.|.++
T Consensus 13 ~~~~v~v~~G~~v~L~C~~--~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~~~~~--~L~i~~~ 86 (349)
T 4dep_C 13 TMRQIQVFEDEPARIKCPL--FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI--SKEKD--VLWFRPT 86 (349)
T ss_dssp CCCCCEEETTSCEEEECTC--CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCE--EEETT--EEEESSC
T ss_pred eeeeEEEecCCeEEEEccc--cccccccccccccCCCceEEEEECCCCCcccccccccccCceE--eecCC--EEEEccC
Confidence 3566789999999999998 66554 9999999884 222 12232 22334 7999999
Q ss_pred CCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCce
Q psy2145 381 YPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTE 460 (808)
Q Consensus 381 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 460 (808)
..+|+|.|+|.|.|..|....++.|.|..++.+..
T Consensus 87 ~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~--------------------------------------------- 121 (349)
T 4dep_C 87 LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN--------------------------------------------- 121 (349)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSC---------------------------------------------
T ss_pred ChhhCEEEEEEEecCCceEEEEEEEEEecCCcccC---------------------------------------------
Confidence 99999999999999999988889999886542210
Q ss_pred eecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEe---eCCCCCcE
Q psy2145 461 LVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI---PVGDPTLK 537 (808)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~---~~g~P~~~ 537 (808)
+.+. .+.. ..+.+|+.+.|.|.+. ..|.|.+.
T Consensus 122 -------------------------------------------~~~~-~~~~-~~~~~g~~~~l~C~~~~~~~~g~p~~~ 156 (349)
T 4dep_C 122 -------------------------------------------SPMK-LPVH-KLYIEYGIQRITCPNVDGYFPSSVKPT 156 (349)
T ss_dssp -------------------------------------------CSCC-CCEE-EEETTCSEEEEECCSCTTSSCTTSCCE
T ss_pred -------------------------------------------cccc-cCcc-eeeecCccEEEEcCCCcccccCCCCce
Confidence 0000 0001 1467899999999731 04689999
Q ss_pred EEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC-eeE---EEEEEEEEEecccccccccCccccc
Q psy2145 538 VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL-GEA---VTTASMKIKTKAGLQLETQHPEGLK 613 (808)
Q Consensus 538 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~-G~~---~~s~~l~V~~~~~i~~~~~~p~~~~ 613 (808)
|+|+|||..+....++. .++. .|.|.+++.+|+|.|+|.|.|.. |.. +..+.|.|...+..
T Consensus 157 v~W~k~~~~l~~~~~~~--~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~----------- 221 (349)
T 4dep_C 157 ITWYMGCYKIQNFNNVI--PEGM--NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN----------- 221 (349)
T ss_dssp EEEEETTEECCSCSSEE--EETT--EEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG-----------
T ss_pred EEEeeCCEECCCcccee--ecCC--EEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC-----------
Confidence 99999999997654443 3333 79999999999999999999987 554 55566666543211
Q ss_pred ccccccCCCCCCCCCCccccCCCeEEeecCCCc-cccCCceEEEEEEEeeC--CCCCeEEEEEECCEEccC-CCcEEEEE
Q psy2145 614 KIQELEQPASPMPQEPERQYEKPIFTQLLTGTS-EIMEGQSAHYDCRVVPV--GDPTMRFEWFVNGVELKM-GSRFHVQH 689 (808)
Q Consensus 614 ~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~-~v~~G~~v~l~C~v~~~--g~P~p~i~W~~~g~~l~~-~~~~~~~~ 689 (808)
..+|.+........ .+.+|+.++|.|.+... |.|.|.|.|++||..+.. +.++.+..
T Consensus 222 -------------------~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~ 282 (349)
T 4dep_C 222 -------------------AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE 282 (349)
T ss_dssp -------------------CCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCE
T ss_pred -------------------CCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCcccccc
Confidence 01355554443322 68899999999999422 789999999999999876 33433311
Q ss_pred -------e--CCEEEEEEccCCCCCc-EEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 690 -------D--FGYVTLDITKCVPADS-GVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 690 -------~--~~~~~L~I~~v~~~D~-G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+ ...++|.|.++..+|+ |.|+|.|.|.+|..+.++.|.|..
T Consensus 283 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp EEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred ceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 1 1134699999999999 999999999999999999999976
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=288.50 Aligned_cols=273 Identities=16% Similarity=0.165 Sum_probs=195.7
Q ss_pred ccCCCceEeecCCeEEEEEEEeecCCCcc-----EEEEEECCEec-------------cCCCcEEEEee-----CcEEEE
Q psy2145 319 TQPMRDIHVAENQAAHFEARLIPVGDSKL-----KVTWLRNGVPI-------------QASNRVSTMHD-----FGYVAL 375 (808)
Q Consensus 319 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-----~v~W~~~g~~l-------------~~~~~~~~~~~-----~~~~~L 375 (808)
...|..+.+..|+.++|.|.+ .+.+.+ .|+|+|+|... ....++..... .+..+|
T Consensus 4 v~~P~~v~~~~G~~v~L~C~v--~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL 81 (313)
T 4fqp_A 4 VQAPTQVPGFLGDSVTLPCYL--QVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL 81 (313)
T ss_dssp EECCSEECCBTTSCEEECCEE--ECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCE
T ss_pred EcCCCEEEEecCCCEEEEEEE--ECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEE
Confidence 344556677899999999999 555543 59999987532 22334433221 122469
Q ss_pred EEccCCCCCCeEEEEEEEc-CCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEe
Q psy2145 376 NFKYTYPEDSGTYTCRAVN-ELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQ 454 (808)
Q Consensus 376 ~I~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 454 (808)
.|.++..+|+|.|+|.|.+ ..|.....+.|.|...|
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P------------------------------------------- 118 (313)
T 4fqp_A 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP------------------------------------------- 118 (313)
T ss_dssp EECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCC-------------------------------------------
T ss_pred EECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCC-------------------------------------------
Confidence 9999999999999999864 44555555666554332
Q ss_pred cCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCC
Q psy2145 455 LNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP 534 (808)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P 534 (808)
.+....... .+..|+.+.|.|.+. .+.|
T Consensus 119 --------------------------------------------------~~~~~~~~~-~~~~~~~~~~~C~~~-~~~P 146 (313)
T 4fqp_A 119 --------------------------------------------------QNTAEVQKV-QLTGEPVPMARCVST-GGRP 146 (313)
T ss_dssp --------------------------------------------------EEEEEECCB-CCCSSCEEEEEEEEE-EEBS
T ss_pred --------------------------------------------------cceecccce-EeecCceEEEEEEcc-CccC
Confidence 122222222 366788899999874 5889
Q ss_pred CcEEEEEECCEecCCCCCeEEEeeCc---EEEEEECCCCCCCCEEEEEEEEeCCeeEEEE--EEEEEEecccccccccCc
Q psy2145 535 TLKVEWFRNEKPLEDSSRITTKHDFG---YVAMDLSHVRAEDEGIYICKATNALGEAVTT--ASMKIKTKAGLQLETQHP 609 (808)
Q Consensus 535 ~~~v~W~k~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s--~~l~V~~~~~i~~~~~~p 609 (808)
.+.+.|++++..+..........++. ...|.|.++..+|+|.|+|.|.|..|....+ +.|.|..
T Consensus 147 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~----------- 215 (313)
T 4fqp_A 147 PAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY----------- 215 (313)
T ss_dssp CCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-----------
T ss_pred CcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-----------
Confidence 99999999998775433222111111 1259999999999999999999987765444 4444443
Q ss_pred ccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEE
Q psy2145 610 EGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQ 688 (808)
Q Consensus 610 ~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~ 688 (808)
+|.+.........+.+|+.++|.|.+ .|+|.| .|.|+|||.+|..+. .
T Consensus 216 -------------------------~P~v~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~~v~W~~~~~~l~~~~----~ 264 (313)
T 4fqp_A 216 -------------------------PPEVSISGYDNNWYLGQNEATLTCDA--RSNPEPTGYNWSTTMGPLPPFA----V 264 (313)
T ss_dssp -------------------------EEEEEEECCCSCEETTCCCEEEEEEE--EEESCCCEEEEEETTBSCCTTE----E
T ss_pred -------------------------CCccccccccceeecCCCeEEEEEEe--cCCCCCcEEEEEECCEECCCce----E
Confidence 25555444444567789999999999 799998 799999999887542 1
Q ss_pred EeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 689 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
..++ +|.|.++..+|+|.|+|.|+|.+|..+.++.|.|..+|
T Consensus 265 ~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 265 AQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp EETT--EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred EeCC--EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 2233 79999999999999999999999999999999998765
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=303.35 Aligned_cols=286 Identities=19% Similarity=0.251 Sum_probs=217.3
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeec-------CCCccEEEEEECCEec--cCCCcEEEEeeCcEEEEEEccCCCCC
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPV-------GDSKLKVTWLRNGVPI--QASNRVSTMHDFGYVALNFKYTYPED 384 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~-------g~p~~~v~W~~~g~~l--~~~~~~~~~~~~~~~~L~I~~v~~~d 384 (808)
..|.|...+....+.+|+.+.|.|.+ . +.|.+.|.|+++|..+ .......+...++ +|.|.++..+|
T Consensus 17 ~~p~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D 92 (339)
T 3o4o_C 17 SCRFRGRHYKREFRLEGEPVALRCPQ--VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQED 92 (339)
T ss_dssp -CEEEEECSCCEEEETTBCCEEECTT--SCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTC
T ss_pred hhHhhCcCceEEEEECCccEEEEecc--ccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCccc
Confidence 47888888889999999999999998 5 8899999999999874 3331222223344 79999999999
Q ss_pred CeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecC
Q psy2145 385 SGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEG 464 (808)
Q Consensus 385 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 464 (808)
+|.|+|.|.|..|....++.|.|...+.....
T Consensus 93 ~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~------------------------------------------------ 124 (339)
T 3o4o_C 93 SGTYVCTTRNASYCDKMSIELRVFENTDAFLP------------------------------------------------ 124 (339)
T ss_dssp CEEEECCEEETTEEEEEEEEEEEECSCGGGHH------------------------------------------------
T ss_pred CEEEEEEEECCcceEEEEEEEEEEcCCCcccc------------------------------------------------
Confidence 99999999999998888888988865432100
Q ss_pred CceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEE-----EeeCCCCCcEEE
Q psy2145 465 EGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCR-----LIPVGDPTLKVE 539 (808)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~-----v~~~g~P~~~v~ 539 (808)
.+.. ...+.+|+.+.|.|. + .|.|.+.|.
T Consensus 125 ----------------------------------------~~~~----~~~~~~g~~v~l~C~~~~~~~--~g~p~~~v~ 158 (339)
T 3o4o_C 125 ----------------------------------------FISY----PQILTLSTSGVLVCPDLSEFT--RDKTDVKIQ 158 (339)
T ss_dssp ----------------------------------------HHCE----EEEEETTSCEEEECCSCTTTC--CSSSCCCBC
T ss_pred ----------------------------------------cccc----ceEEECCCCEEEEecCCcccc--cCCCCceEE
Confidence 0000 014678999999999 6 789999999
Q ss_pred EEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe----eEEEEEEEEEEecccccccccCcccccc
Q psy2145 540 WFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALG----EAVTTASMKIKTKAGLQLETQHPEGLKK 614 (808)
Q Consensus 540 W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G----~~~~s~~l~V~~~~~i~~~~~~p~~~~~ 614 (808)
|+|+|..+... .++......+ .|.|.+++.+|+|.|+|.|.|..| ....++.|.|...+..
T Consensus 159 W~k~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~------------ 224 (339)
T 3o4o_C 159 WYKDSLLLDKDNEKFLSVRGTT--HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE------------ 224 (339)
T ss_dssp CEESSCBCCTTCSSEEECTTSS--EEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCC------------
T ss_pred EecCCeeCCCCCceeEEcCCcc--eEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCC------------
Confidence 99999999766 4554443333 799999999999999999999988 5677788888764321
Q ss_pred cccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEee-CCCC-CeEEEEEECCEEccC---------CC
Q psy2145 615 IQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP-VGDP-TMRFEWFVNGVELKM---------GS 683 (808)
Q Consensus 615 i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~-~g~P-~p~i~W~~~g~~l~~---------~~ 683 (808)
.+|.|... .....+.+|+.+.|.|.+.. .|.| .+.+.|++||..+.. +.
T Consensus 225 -------------------~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~ 284 (339)
T 3o4o_C 225 -------------------TIPVIISP-LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGP 284 (339)
T ss_dssp -------------------CCCEECCC-SCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECC
T ss_pred -------------------CCCEEecC-CceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecc
Confidence 13565555 34457899999999999821 3888 899999999987643 33
Q ss_pred cEEEEEeCC---EEEEEEccCCCCCc-EEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 684 RFHVQHDFG---YVTLDITKCVPADS-GVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 684 ~~~~~~~~~---~~~L~I~~v~~~D~-G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
++.+..++. .++|.|.++..+|+ |.|+|.|.|.+|.++..+.|.+..+
T Consensus 285 ~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~~~ 336 (339)
T 3o4o_C 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEHHH 336 (339)
T ss_dssp CEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC---
T ss_pred eEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHhcc
Confidence 333333332 23799999999998 9999999999999999888876543
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=281.25 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=203.3
Q ss_pred CCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEc
Q psy2145 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVN 394 (808)
Q Consensus 315 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 394 (808)
+|.+...+....+.+|+.+.|.|.+ .+ .|.|++++.... ......+..+|.|.++..+|+|.|+|.|.|
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~--~~----~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 72 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVS--NG----SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELE 72 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEEC--SS----CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC
T ss_pred CcEecCCCceEEECCCCCEEEEEEe--CC----cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEec
Confidence 6677777778889999999999998 45 499998774321 111222334899999999999999999999
Q ss_pred CCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccC
Q psy2145 395 ELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQH 474 (808)
Q Consensus 395 ~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (808)
..|.....+.|.|..++..
T Consensus 73 ~~~~~~~~~~l~V~~~~~~------------------------------------------------------------- 91 (289)
T 3ejj_X 73 DPMAGSTTIHLYVKDPAHS------------------------------------------------------------- 91 (289)
T ss_dssp -----CEEEEEEECCSSCS-------------------------------------------------------------
T ss_pred cCCcceeEEEEEEeCCCcc-------------------------------------------------------------
Confidence 9888777788888754321
Q ss_pred CchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEE-CCEecCCCCC
Q psy2145 475 PKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFR-NEKPLEDSSR 552 (808)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k-~g~~l~~~~~ 552 (808)
|...+... .+.+|+.+.|.|.+ .+.|.+. +.|++ +|..+..+.+
T Consensus 92 -------------------------------~~~~~~~~-~v~~g~~v~L~C~~--~~~~~~~~v~W~~~~~~~~~~~~~ 137 (289)
T 3ejj_X 92 -------------------------------WNLLAQEV-TVVEGQEAVLPCLI--TDPALKDSVSLMREGGRQVLRKTV 137 (289)
T ss_dssp -------------------------------EEESCSEE-EEETTSCEEECEEE--SCGGGGGSEEEEEGGGEECCTTCC
T ss_pred -------------------------------eecccceE-EEecCCceEeEEEc--cCCCcceEEEEEecCCeecCCCcc
Confidence 11222222 57899999999999 6777665 99986 7888887777
Q ss_pred eEEEeeCcEEEEEECCCCCCCCEEEEEEEE-eCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCcc
Q psy2145 553 ITTKHDFGYVAMDLSHVRAEDEGIYICKAT-NALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPER 631 (808)
Q Consensus 553 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~ 631 (808)
+....++ .|.|.+++.+|+|.|+|.|. |..|..+..+.|.|.....
T Consensus 138 ~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~------------------------------ 184 (289)
T 3ejj_X 138 YFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP------------------------------ 184 (289)
T ss_dssp EEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCC------------------------------
T ss_pred EEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCC------------------------------
Confidence 7665443 69999999999999999999 5666667778888874211
Q ss_pred ccCCCeEEeecCCCccccCCceEEEEEEEeeCC-CCCeEEEEEECCEEccCCCcEEEEE--eCCEEEEEEccCCCCCcEE
Q psy2145 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQH--DFGYVTLDITKCVPADSGV 708 (808)
Q Consensus 632 ~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~ 708 (808)
.+|.+...+.. ..+.+|+.+.|.|.+ .| .|.+.|.|+++|..+.......... .....+|.|.++..+|+|.
T Consensus 185 --~~p~i~~~~~~-~~~~~g~~~~l~C~~--~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 259 (289)
T 3ejj_X 185 --EPPQIKLEPSK-LVRIRGEAAQIVCSA--TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGI 259 (289)
T ss_dssp --CCCEEEEESSS-EECCSSSCEEEEEEE--EESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEE
T ss_pred --CCCeEEecCCc-eEEEeCCcEEEEEEe--CCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEE
Confidence 23666655443 457899999999999 56 8999999999999987643322110 0114589999999999999
Q ss_pred EEEEEEeCCcceEEEEEEEEEeCCC
Q psy2145 709 YMCKAINRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 709 Y~C~A~N~~G~~~~s~~l~V~~~p~ 733 (808)
|+|.|.|.+|.+++++.|.+...+.
T Consensus 260 Y~C~a~N~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 260 YSCVASNDVGTRTATMNFQVVESHH 284 (289)
T ss_dssp EEEEEECSSCEEEEEEEEECC----
T ss_pred EEEEEEcCCCCccccEEEEEEeccc
Confidence 9999999999999999999987754
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=284.21 Aligned_cols=275 Identities=16% Similarity=0.171 Sum_probs=198.5
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCe-----EEEEeeCCEEc-------------cCCCceEEEec-----CceEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTM-----KVEWFHNNVPI-------------KSGSRFTETNN-----FGFVA 242 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-----~v~W~~~g~~l-------------~~~~~~~~~~~-----~~~~~ 242 (808)
++..|.++.+..|++|+|.|.+. +.+.+ .|.|+|+|... ....++..... .+..+
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~--~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s 80 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQ--VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNAS 80 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEE--CCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCC
T ss_pred EEcCCCEEEEecCCCEEEEEEEE--CCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceE
Confidence 45567788899999999999995 33332 59999987532 22333333211 13347
Q ss_pred EEEccCCCCCcEEEEEEEEe-CceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccC
Q psy2145 243 LDIMQCLPEDSGVYTCRAVN-ALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQP 321 (808)
Q Consensus 243 L~I~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~ 321 (808)
|.|.+++.+|+|.|+|.|.+ ..|.....+.|.|.. +|.+...
T Consensus 81 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~-------------------------------------~P~~~~~ 123 (313)
T 4fqp_A 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA-------------------------------------KPQNTAE 123 (313)
T ss_dssp EEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBB-------------------------------------CCEEEEE
T ss_pred EEECcCChhhCEEEEEEEeeccCcceeeeeeeeecc-------------------------------------CCcceec
Confidence 99999999999999999864 556666666666544 4444444
Q ss_pred CCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCc---EEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2145 322 MRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG---YVALNFKYTYPEDSGTYTCRAVNELGE 398 (808)
Q Consensus 322 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 398 (808)
+....+..|+.+.|.|.+. .+.|.+.+.|++++..+..........++. ...|.|..+..+|+|.|+|.|.|..+.
T Consensus 124 ~~~~~~~~~~~~~~~C~~~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 202 (313)
T 4fqp_A 124 VQKVQLTGEPVPMARCVST-GGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFE 202 (313)
T ss_dssp ECCBCCCSSCEEEEEEEEE-EEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSS
T ss_pred ccceEeecCceEEEEEEcc-CccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcC
Confidence 4455667888999999873 588999999999998776543333222322 235899999999999999999998776
Q ss_pred eEEE--EEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCc
Q psy2145 399 AVTS--STLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPK 476 (808)
Q Consensus 399 ~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (808)
.... +.|.|..+|
T Consensus 203 ~~~~~~~~l~V~~~P----------------------------------------------------------------- 217 (313)
T 4fqp_A 203 KPQLLTVNLTVYYPP----------------------------------------------------------------- 217 (313)
T ss_dssp SCEEEEEECCBCEEE-----------------------------------------------------------------
T ss_pred ccceeeeecccccCC-----------------------------------------------------------------
Confidence 5443 444444332
Q ss_pred hhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCCCCeEE
Q psy2145 477 GLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDSSRITT 555 (808)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~~~~~~ 555 (808)
.|.....+...+.+|+.++|.|.+ .|.|.| .|+|+|+|.+|....
T Consensus 218 ----------------------------~v~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~~v~W~~~~~~l~~~~---- 263 (313)
T 4fqp_A 218 ----------------------------EVSISGYDNNWYLGQNEATLTCDA--RSNPEPTGYNWSTTMGPLPPFA---- 263 (313)
T ss_dssp ----------------------------EEEEECCCSCEETTCCCEEEEEEE--EEESCCCEEEEEETTBSCCTTE----
T ss_pred ----------------------------ccccccccceeecCCCeEEEEEEe--cCCCCCcEEEEEECCEECCCce----
Confidence 222212222246789999999999 789988 699999999986542
Q ss_pred EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 556 KHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 556 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
...++ +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...|.
T Consensus 264 ~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 264 VAQGA--QLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EEETT--EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred EEeCC--EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 12233 799999999999999999999999999999999987653
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=286.54 Aligned_cols=265 Identities=15% Similarity=0.187 Sum_probs=196.2
Q ss_pred CceEeecCCeEEEEEEEeecC---------CCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCe-EEEEEE
Q psy2145 323 RDIHVAENQAAHFEARLIPVG---------DSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSG-TYTCRA 392 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~~~g---------~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G-~Y~C~a 392 (808)
....+.+|+.+.|.|.+ .+ .|.+.|+|+|+|..+....+. . .++ +|.|.++..+|+| .|+|.|
T Consensus 37 ~~v~v~eG~~v~L~C~~--~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~-~~~--~L~i~~v~~~D~Gs~Y~C~a 109 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--V-KNG--DLWIANYTSNDSHRRYLCTV 109 (329)
T ss_dssp EEEEECTTSCEEECCHH--HHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--E-ETT--EEEESSCCGGGGGCCEEEEE
T ss_pred ceEEEECCCeEEEEccC--CCCccccccccCCCCeeEEEECCCCccccCce--e-ecc--eEEEcCCChHhCCCcEEEEE
Confidence 45678999999999998 44 366899999999877654443 2 233 7999999999999 999999
Q ss_pred EcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecc
Q psy2145 393 VNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDT 472 (808)
Q Consensus 393 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 472 (808)
.|..|.......+.|...+
T Consensus 110 ~n~~g~~~~~~~~~v~~~~------------------------------------------------------------- 128 (329)
T 3oq3_B 110 TTKNGDCVQGIVRSHIRKP------------------------------------------------------------- 128 (329)
T ss_dssp ECTTSCEEEEEEEEEECCC-------------------------------------------------------------
T ss_pred EeCCCceeeEEEEEEEcCC-------------------------------------------------------------
Confidence 9999876554433333221
Q ss_pred cCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEECCEecCC-C
Q psy2145 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLED-S 550 (808)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g~~l~~-~ 550 (808)
|.+..+.... .+.+|+.+.|.|.+ .|.| .+.|+|+|+|..+.. .
T Consensus 129 -------------------------------p~~~~~~~~~-~~~~G~~v~L~C~~--~g~p~~~~i~W~k~~~~l~~~~ 174 (329)
T 3oq3_B 129 -------------------------------PSCIPETYEL-GTHDKYGIDLYCGI--LYAKHYNNITWYKNNQELIIDG 174 (329)
T ss_dssp -------------------------------CSCEEEEEET-TSSTTTCEEEECCC--CSCCCCCEEEEEETTEECCCSS
T ss_pred -------------------------------CcEeccccce-EEeCCCcEEEEecc--CCCCCCceEEEEECCccCCCCC
Confidence 1111111111 46789999999998 8999 999999999999863 3
Q ss_pred CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC--CeeEEEE----EEEEEEecccccccccCcccccccccccCCCCC
Q psy2145 551 SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA--LGEAVTT----ASMKIKTKAGLQLETQHPEGLKKIQELEQPASP 624 (808)
Q Consensus 551 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~G~~~~s----~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~ 624 (808)
.++... ++ .|.|.+++.+|+|.|+|.|.|. .|..... +.|.|...+...
T Consensus 175 ~~~~~~--~~--~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~--------------------- 229 (329)
T 3oq3_B 175 TKYSQS--GQ--NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR--------------------- 229 (329)
T ss_dssp SSEEEE--TT--EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCC---------------------
T ss_pred ceEecC--CC--EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCC---------------------
Confidence 444433 33 7999999999999999999997 6544333 667776543210
Q ss_pred CCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC---Ce-EEEEEECCEEc-cCCCcEEEE--EeC--CEEE
Q psy2145 625 MPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP---TM-RFEWFVNGVEL-KMGSRFHVQ--HDF--GYVT 695 (808)
Q Consensus 625 ~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P---~p-~i~W~~~g~~l-~~~~~~~~~--~~~--~~~~ 695 (808)
.|.+ ......+.+|+.+.|.|.+ .|.| .+ .|.|+|||..+ ..+.+.... ..+ ...+
T Consensus 230 ----------~~~~---~~~~~~v~~G~~~~l~C~~--~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 294 (329)
T 3oq3_B 230 ----------FKLI---LDPKINVTIGEPANITCTA--VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEAT 294 (329)
T ss_dssp ----------EEEE---CCSEEEECTTSCEEEEEEE--EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEE
T ss_pred ----------Ccee---cCCeeEEecCCCEEEEEEE--EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeE
Confidence 0111 2223568899999999999 6887 77 99999999985 444443322 222 3568
Q ss_pred EEEccCCCCCcE-EEEEEEEeCCcceEEEEEEEEE
Q psy2145 696 LDITKCVPADSG-VYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 696 L~I~~v~~~D~G-~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|.|.++..+|+| .|+|.|.|.+|..+.++.|.|+
T Consensus 295 L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 295 LYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329 (329)
T ss_dssp EEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEeccHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence 999999999999 9999999999999999999873
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=293.06 Aligned_cols=274 Identities=17% Similarity=0.190 Sum_probs=201.5
Q ss_pred CceEeecCCeEEEEEEEeecCCC-ccEEEEEECCEecc----CCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 323 RDIHVAENQAAHFEARLIPVGDS-KLKVTWLRNGVPIQ----ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~----~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
..+.+.+|+.+.|.|.+ .+.| .+.|.|+|+|..+. ...++... ++ +|.|.++..+|+|.|+|.|.|..|
T Consensus 13 ~~~~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~n~~g 86 (315)
T 1itb_B 13 IILVSSANEIDVRPCPL--NPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KE--KLWFVPAKVEDSGHYYCVVRNSSY 86 (315)
T ss_dssp CCCEEETTSCCCCBCCC--CSCCCSSCCCEECTTSCSCSCCCTTSSSEEC--SS--BEECTTCCGGGCSCCEECCCSSSC
T ss_pred eEEEEcCCCcEEEEeec--cCcCCCceEEEEeCCCcCccccccCCcEecc--CC--eEEECCCChhhCEEEEEEEeCCce
Confidence 35678999999999998 6766 78999999986542 23343332 23 799999999999999999999988
Q ss_pred ceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCch
Q psy2145 398 EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKG 477 (808)
Q Consensus 398 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (808)
.......+.|...+.
T Consensus 87 ~~~~~~~v~v~~~~p----------------------------------------------------------------- 101 (315)
T 1itb_B 87 CLRIKISAKFVENEP----------------------------------------------------------------- 101 (315)
T ss_dssp CCCEECCCEEECCCT-----------------------------------------------------------------
T ss_pred EEEEEEEEEEeCCCC-----------------------------------------------------------------
Confidence 776555555432211
Q ss_pred hhhhcccccCCCCCCCCcCCCCccCCCeeeecCC--CcccccCCCceEEEEEEe----eCCCCCcEEEEEECCEecCCCC
Q psy2145 478 LEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQ--NIDAVEEGKNAHFSCRLI----PVGDPTLKVEWFRNEKPLEDSS 551 (808)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~--~~~~v~~G~~v~l~C~v~----~~g~P~~~v~W~k~g~~l~~~~ 551 (808)
.+..... ....+.+|+.+.|.|.+. +.|.|.+.++|+|+|..+..+.
T Consensus 102 ---------------------------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~ 154 (315)
T 1itb_B 102 ---------------------------NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN 154 (315)
T ss_dssp ---------------------------TSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS
T ss_pred ---------------------------CcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc
Confidence 1100000 001477899999999851 1588999999999999997543
Q ss_pred CeEEEeeCcEEEEEECCCCCCCCEEEEEEEE-eCCeeEE---EEEEEEEEecccccccccCcccccccccccCCCCCCCC
Q psy2145 552 RITTKHDFGYVAMDLSHVRAEDEGIYICKAT-NALGEAV---TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQ 627 (808)
Q Consensus 552 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~G~~~---~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~ 627 (808)
.. ....++ .|.|.+++.+|+|.|+|.|. |..|... ..+.+.+....
T Consensus 155 ~~-~~~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~--------------------------- 204 (315)
T 1itb_B 155 IH-FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN--------------------------- 204 (315)
T ss_dssp SS-EEEETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC---------------------------
T ss_pred ce-EeecCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC---------------------------
Confidence 32 233334 79999999999999999999 7888773 33444343211
Q ss_pred CCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE----e--------CCEEE
Q psy2145 628 EPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH----D--------FGYVT 695 (808)
Q Consensus 628 ~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~----~--------~~~~~ 695 (808)
...+|.|...+.....+.+|+.+.|.|.+ .|.|.|.|.|++||..+..+.+..... . ...+.
T Consensus 205 ----~~~~P~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (315)
T 1itb_B 205 ----KPTRPVIVSPANETMEVDLGSQIQLICNV--TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278 (315)
T ss_dssp ----CCCCCEECSCCSEEEECCSSSCEEEEEEE--EECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEE
T ss_pred ----CCCCCEEecCCCCcEEEeCCCcEEEEEEE--ecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEE
Confidence 01246665554433568899999999999 799999999999999998765432211 1 12458
Q ss_pred EEEccCCCCC-cEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 696 LDITKCVPAD-SGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 696 L~I~~v~~~D-~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|.|.++..+| +|.|+|.|.|.+|.++.++.|.|..
T Consensus 279 L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314 (315)
T ss_dssp EEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred EEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence 9999999999 9999999999999999999998854
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=292.29 Aligned_cols=273 Identities=15% Similarity=0.196 Sum_probs=194.5
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccC-----------------CCcEEEEe-eCcEEEEEEccCCCCCC
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA-----------------SNRVSTMH-DFGYVALNFKYTYPEDS 385 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~-----------------~~~~~~~~-~~~~~~L~I~~v~~~d~ 385 (808)
.+.+.+|+.++|.|.+. .+.+.+.|+|+|++..... ..|+.+.. ..+..+|.|.++..+|+
T Consensus 8 ~vtv~~G~~v~L~C~v~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIE-VNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp SCEEETTSCEEECCBCC-CSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred EeEEEcCCcEEEEEEec-CCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 46788999999999973 3556678999996532211 12332221 11234799999999999
Q ss_pred eEEEEEEEcC-CcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecC
Q psy2145 386 GTYTCRAVNE-LGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEG 464 (808)
Q Consensus 386 G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 464 (808)
|.|+|.|.|. .|.....+.+.+...+.+.
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~-------------------------------------------------- 116 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVS-------------------------------------------------- 116 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEEE--------------------------------------------------
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccccc--------------------------------------------------
Confidence 9999999886 5666666777776543211
Q ss_pred CceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC
Q psy2145 465 EGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE 544 (808)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g 544 (808)
+....... ....|+.+.|.|.+. .|.|.+.|+|+|+|
T Consensus 117 -----------------------------------------~~~~~~~~-~~~~~~~~~l~C~~~-~g~P~~~i~W~~~~ 153 (308)
T 4fom_A 117 -----------------------------------------LIKGPDSL-IDGGNETVAAICIAA-TGKPVAHIDWEGDL 153 (308)
T ss_dssp -----------------------------------------EEECSSCC-CTTCSCEEEEEEEEE-EEBSCCEEEECCCS
T ss_pred -----------------------------------------ccccccee-EEcCCceEEEEEEec-CCcCCceEEEEECC
Confidence 11111111 356789999999864 68999999999999
Q ss_pred EecCCCCCeEEE-eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE--EEEEEEecccccccccCcccccccccccCC
Q psy2145 545 KPLEDSSRITTK-HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT--ASMKIKTKAGLQLETQHPEGLKKIQELEQP 621 (808)
Q Consensus 545 ~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s--~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~ 621 (808)
..+......... .......|.|.++..+|+|.|+|.|.|..|....+ +.|.|...
T Consensus 154 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~---------------------- 211 (308)
T 4fom_A 154 GEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYA---------------------- 211 (308)
T ss_dssp SBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEE----------------------
T ss_pred cccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecC----------------------
Confidence 887643211000 00112369999999999999999999988765544 44444443
Q ss_pred CCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEcc
Q psy2145 622 ASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITK 700 (808)
Q Consensus 622 ~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~ 700 (808)
|.+.........+.+|+.++|.|.+ .|.|.| .|.|+|+|..+..+... .+...|.|.+
T Consensus 212 --------------P~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~~v~W~k~~~~~~~~~~~-----~~~~~l~i~~ 270 (308)
T 4fom_A 212 --------------PEVSVTGYDGNWFVGRKGVNLKCNA--DANPPPFKSVWSRLDGQWPDGLLA-----SDNTLHFVHP 270 (308)
T ss_dssp --------------EEECCBCCCSCEETTCCSCEEECCE--EEESCEEEEECCBSSSCCCSSCBC-----STTEEECCSC
T ss_pred --------------CeeEEcccceeeeeccccEEEEEEE--ecCCCCcEEEEEECCeECCCcEEE-----cCCeEEEECC
Confidence 4444333444567789999999999 799988 79999999888754321 2334688999
Q ss_pred CCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCC
Q psy2145 701 CVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 701 v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~ 733 (808)
+..+|+|.|+|.|+|.+|.++.++.|.|..+|-
T Consensus 271 v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 271 LTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp CCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred CChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 999999999999999999999999999998874
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-33 Score=296.04 Aligned_cols=287 Identities=19% Similarity=0.275 Sum_probs=215.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeec-----CCCCeEEEEeeCCEE--ccCCCceEEEecCceEEEEEccCCCCCc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPV-----SDNTMKVEWFHNNVP--IKSGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~-----~~p~~~v~W~~~g~~--l~~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
...|.|...+.++.+.+|+++.|.|.+.+. +.|.+.|.|+|+|.. +....+..+...++ +|.|.+++.+|+
T Consensus 16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~ 93 (339)
T 3o4o_C 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDS 93 (339)
T ss_dssp --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCC
T ss_pred hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccC
Confidence 457899999999999999999999998311 788899999999988 43332233333334 799999999999
Q ss_pred EEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeE
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAA 333 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~ 333 (808)
|.|+|.|.|..|....++.|.|...+... .........+.+|+.+
T Consensus 94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~-----------------------------------~~~~~~~~~~~~g~~v 138 (339)
T 3o4o_C 94 GTYVCTTRNASYCDKMSIELRVFENTDAF-----------------------------------LPFISYPQILTLSTSG 138 (339)
T ss_dssp EEEECCEEETTEEEEEEEEEEEECSCGGG-----------------------------------HHHHCEEEEEETTSCE
T ss_pred EEEEEEEECCcceEEEEEEEEEEcCCCcc-----------------------------------ccccccceEEECCCCE
Confidence 99999999999988888999987643210 0011123467899999
Q ss_pred EEEEE-----EeecCCCccEEEEEECCEeccCC-CcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcc----eEEEE
Q psy2145 334 HFEAR-----LIPVGDSKLKVTWLRNGVPIQAS-NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE----AVTSS 403 (808)
Q Consensus 334 ~l~C~-----~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~----~~~~~ 403 (808)
.|.|. + .|.|.+.|.|+++|..+... .++....+.+ .|.|.++..+|+|.|+|.|.|..|. ....+
T Consensus 139 ~l~C~~~~~~~--~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~ 214 (339)
T 3o4o_C 139 VLVCPDLSEFT--RDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT--HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214 (339)
T ss_dssp EEECCSCTTTC--CSSSCCCBCCEESSCBCCTTCSSEEECTTSS--EEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEE
T ss_pred EEEecCCcccc--cCCCCceEEEecCCeeCCCCCceeEEcCCcc--eEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEE
Confidence 99999 5 78899999999999998776 4555444333 7999999999999999999999874 45567
Q ss_pred EEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcc
Q psy2145 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRK 483 (808)
Q Consensus 404 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (808)
.|.|...+.
T Consensus 215 ~l~V~~~~~----------------------------------------------------------------------- 223 (339)
T 3o4o_C 215 ELRIKKKKE----------------------------------------------------------------------- 223 (339)
T ss_dssp EEEEECCCC-----------------------------------------------------------------------
T ss_pred EEEEEcCCC-----------------------------------------------------------------------
Confidence 777764321
Q ss_pred cccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEe-eCCCC-CcEEEEEECCEecCC---------CCC
Q psy2145 484 LEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI-PVGDP-TLKVEWFRNEKPLED---------SSR 552 (808)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~-~~g~P-~~~v~W~k~g~~l~~---------~~~ 552 (808)
..+|.|..++... .+.+|+.+.|.|.+. ..|.| .+.+.|++||..+.. +.+
T Consensus 224 -----------------~~~P~i~~~~~~~-~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~ 285 (339)
T 3o4o_C 224 -----------------ETIPVIISPLKTI-SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285 (339)
T ss_dssp -----------------CCCCEECCCSCCC-CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCC
T ss_pred -----------------CCCCEEecCCcee-EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecce
Confidence 1145666654444 688999999999982 13777 889999999987653 223
Q ss_pred eEEEeeCc---EEEEEECCCCCCCC-EEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 553 ITTKHDFG---YVAMDLSHVRAEDE-GIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 553 ~~~~~~~~---~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
+....++. ...|.|.++..+|+ |.|+|.|.|..|+.+..+.+.+.
T Consensus 286 ~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp EECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred EEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 33332332 12699999999997 99999999999999887766554
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=282.00 Aligned_cols=266 Identities=19% Similarity=0.191 Sum_probs=199.3
Q ss_pred CCccccCCCCcEEEEEEEeeCC-------CCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCe-eEEEEEE
Q psy2145 57 KSIENLRERGHAHFECKLEPVT-------DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSG-TYTCRAV 128 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~-------~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~ 128 (808)
..+ .+.+|+++.|.|.+.+.. +|.+.|.|||+|..+....+. . ..+ +|.|.+++.+|+| .|+|.|.
T Consensus 37 ~~v-~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~-~~~--~L~i~~v~~~D~Gs~Y~C~a~ 110 (329)
T 3oq3_B 37 MND-MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--V-KNG--DLWIANYTSNDSHRRYLCTVT 110 (329)
T ss_dssp EEE-EECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--E-ETT--EEEESSCCGGGGGCCEEEEEE
T ss_pred ceE-EEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--e-ecc--eEEEcCCChHhCCCcEEEEEE
Confidence 444 789999999999998632 267899999999887765554 2 223 7999999999999 9999999
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
|..|.......+.|. ..+|.+........+.+|+.+.|.|.+
T Consensus 111 n~~g~~~~~~~~~v~-------------------------------------~~~p~~~~~~~~~~~~~G~~v~L~C~~- 152 (329)
T 3oq3_B 111 TKNGDCVQGIVRSHI-------------------------------------RKPPSCIPETYELGTHDKYGIDLYCGI- 152 (329)
T ss_dssp CTTSCEEEEEEEEEE-------------------------------------CCCCSCEEEEEETTSSTTTCEEEECCC-
T ss_pred eCCCceeeEEEEEEE-------------------------------------cCCCcEeccccceEEeCCCcEEEEecc-
Confidence 998875555444443 223444444444557789999999998
Q ss_pred ecCCC-CeEEEEeeCCEEccC-CCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC--ceeEEE----EEEEEEeeCCc
Q psy2145 209 PVSDN-TMKVEWFHNNVPIKS-GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA--LGQAVT----SGNLLVHSKKS 280 (808)
Q Consensus 209 ~~~~p-~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~--~g~~~~----~~~l~V~~~~~ 280 (808)
.+.| .+.|.|+|+|..+.. +.++... ++ .|.|.+++.+|+|.|+|.|.|. .|.... .+.|.|..++.
T Consensus 153 -~g~p~~~~i~W~k~~~~l~~~~~~~~~~--~~--~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~ 227 (329)
T 3oq3_B 153 -LYAKHYNNITWYKNNQELIIDGTKYSQS--GQ--NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQD 227 (329)
T ss_dssp -CSCCCCCEEEEEETTEECCCSSSSEEEE--TT--EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCC
T ss_pred -CCCCCCceEEEEECCccCCCCCceEecC--CC--EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCC
Confidence 6788 899999999999863 4455444 23 8999999999999999999997 654333 36677765321
Q ss_pred ccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCC---cc-EEEEEECCE
Q psy2145 281 IQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS---KL-KVTWLRNGV 356 (808)
Q Consensus 281 i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p---~~-~v~W~~~g~ 356 (808)
. ..|.+ .+....+.+|+.+.|.|.+ .|.| .+ .+.|+++|.
T Consensus 228 ~--------------------------------~~~~~--~~~~~~v~~G~~~~l~C~~--~g~p~~~~~i~v~W~~~g~ 271 (329)
T 3oq3_B 228 H--------------------------------RFKLI--LDPKINVTIGEPANITCTA--VSTSLLVDDVLIDWENPSG 271 (329)
T ss_dssp C--------------------------------CEEEE--CCSEEEECTTSCEEEEEEE--EETTCCTTCCEEEEECTTS
T ss_pred C--------------------------------CCcee--cCCeeEEecCCCEEEEEEE--EECCCCCCCcEEEEEECCe
Confidence 0 01233 4455788999999999999 6776 67 899999998
Q ss_pred ec-cCCCcEEEE--eeC--cEEEEEEccCCCCCCe-EEEEEEEcCCcceEEEEEEEE
Q psy2145 357 PI-QASNRVSTM--HDF--GYVALNFKYTYPEDSG-TYTCRAVNELGEAVTSSTLFV 407 (808)
Q Consensus 357 ~l-~~~~~~~~~--~~~--~~~~L~I~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~V 407 (808)
.+ ..+.+.... .++ ....|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus 272 ~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 272 WIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp CBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred eeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 84 444433222 122 3458999999999999 999999999999998888876
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.2e-30 Score=286.63 Aligned_cols=422 Identities=14% Similarity=0.123 Sum_probs=235.1
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC--eEEEEeeC--CEEc---c-------------CCCceEEEec--CceEEEEEc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHN--NVPI---K-------------SGSRFTETNN--FGFVALDIM 246 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~~~--g~~l---~-------------~~~~~~~~~~--~~~~~L~I~ 246 (808)
.+..+.+.+|++|+|.|.+.+..... ..+.|||+ |..+ . ...|+.+..+ .+.++|.|.
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 45678899999999999994211122 78999995 3221 0 1245655533 346799999
Q ss_pred cCCCCCcEEEEEEEEeCce-----------e--EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccC
Q psy2145 247 QCLPEDSGVYTCRAVNALG-----------Q--AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVS 313 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 313 (808)
+++.+|+|.|.|.+.+..| . ....+.|.|...+ .
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~---------------------------------~ 132 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP---------------------------------T 132 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC---------------------------------C
Confidence 9999999999999998642 1 1133567775311 1
Q ss_pred CCCeec-cCCCceEeecCCeEEEEEEEeecCC-Ccc-EEEEEECCEeccC-CCcEEEEeeCc---EEEEEEccCCCCCCe
Q psy2145 314 QAPVFT-QPMRDIHVAENQAAHFEARLIPVGD-SKL-KVTWLRNGVPIQA-SNRVSTMHDFG---YVALNFKYTYPEDSG 386 (808)
Q Consensus 314 ~~p~~~-~~~~~~~v~~G~~~~l~C~~~~~g~-p~~-~v~W~~~g~~l~~-~~~~~~~~~~~---~~~L~I~~v~~~d~G 386 (808)
.+|.+. ..+.......|+.+.|.|.+ .|. |.+ .|+|++++..... ........++. .+.|.|.....+ .|
T Consensus 133 ~~P~i~~~~~~~~~~~~~~~v~L~C~~--~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g 209 (512)
T 1zvo_C 133 KAPDVFPIISGCRHPKDNSPVVLACLI--TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QG 209 (512)
T ss_pred cCCeEEeccCCcccccCCCeEEEEEEE--EeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-Cc
Confidence 234333 11111112357899999999 454 654 9999997643210 00001111111 235888888777 99
Q ss_pred EEEEEEEcCCcceEEEE-----------EEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEec
Q psy2145 387 TYTCRAVNELGEAVTSS-----------TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQL 455 (808)
Q Consensus 387 ~Y~C~a~n~~g~~~~~~-----------~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 455 (808)
.|+|.|.|..|.....+ .+.|..+|.+.. .+.. +...|.- ..
T Consensus 210 ~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~------~~~~-------------------~~~~~~~--~~ 262 (512)
T 1zvo_C 210 EYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEG------SLAK-------------------ATTAPAT--TR 262 (512)
T ss_pred eEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhc------cccc-------------------cccCchh--hc
Confidence 99999999988765544 223322221000 0000 0000000 00
Q ss_pred CCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCee-eecCCCcccccCCCceEEEEEEeeCCC-
Q psy2145 456 NGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVF-TKPLQNIDAVEEGKNAHFSCRLIPVGD- 533 (808)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g~- 533 (808)
++ .+ ... ... .+..+. ...+.+..... -.....+|.+ +.++... .+.+|+.++|+|.+ .|.
T Consensus 263 ~g--~~-~~~--~~~--~~~~~~----~h~~~~~~~~~---~~~~~~~p~v~~~~p~~~-~~~~g~~~~L~C~v--~g~~ 325 (512)
T 1zvo_C 263 NT--GR-GGE--EKK--KEKEKE----EQEERETKTPE---CPSHTQPLGVYLLTPAVQ-DLWLRDKATFTCFV--VGSD 325 (512)
T ss_pred cC--cc-ccc--cee--ccCCcc----cccccCccccc---CCCCCCCCEEEEECCChH-HhccCCceEEEEEE--eceE
Confidence 00 00 000 000 000000 00000000000 0011234444 4443333 46789999999999 564
Q ss_pred C-CcEEEEEECCEecCCCCC--eEEEeeCc----EEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccc
Q psy2145 534 P-TLKVEWFRNEKPLEDSSR--ITTKHDFG----YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLET 606 (808)
Q Consensus 534 P-~~~v~W~k~g~~l~~~~~--~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~ 606 (808)
| ...|+|+|||+.+..... ......++ ...|.|..+..+|.|.|+|.|.|..+... ...+.......
T Consensus 326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~----- 399 (512)
T 1zvo_C 326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ----- 399 (512)
T ss_pred CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC-----
Confidence 4 358999999998762211 11111222 23699999999999999999999987654 33332211000
Q ss_pred cCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEE-EEEEEeeCCCCC--eEEEEEECCEEccCCC
Q psy2145 607 QHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH-YDCRVVPVGDPT--MRFEWFVNGVELKMGS 683 (808)
Q Consensus 607 ~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~-l~C~v~~~g~P~--p~i~W~~~g~~l~~~~ 683 (808)
...+|.+....... +|+.+. |.|.+ .|.++ ..|.|+|||.++..+.
T Consensus 400 -------------------------~~~~p~v~~~~~~~----~~~~~~~L~C~~--~g~~P~~i~v~W~k~g~~~~~~~ 448 (512)
T 1zvo_C 400 -------------------------APVKLSLNLLASSD----PPEAASWLLCEV--SGFSPPNILLMWLEDQREVNTSG 448 (512)
T ss_pred -------------------------CCCCCEEEEEccCc----CCCCceEEEEEE--eeeCCCCcEEEEEECCeECcCcc
Confidence 01235544433221 799999 99999 67543 4789999999997643
Q ss_pred cEE--E-EEeCC--E---EEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 684 RFH--V-QHDFG--Y---VTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 684 ~~~--~-~~~~~--~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
... + ...++ + +.|.|.....+|.|.|+|.|.|............
T Consensus 449 ~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~ 500 (512)
T 1zvo_C 449 FAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRS 500 (512)
T ss_pred ccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEE
Confidence 211 1 12223 2 4677777777789999999999976544443333
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-31 Score=273.58 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=205.4
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
.+...|..+ .+.+|+.++|.|.+.+ .|.|++++... .......+..+|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~i~~~~~~~-~v~~G~~v~L~C~~~~------~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 73 (289)
T 3ejj_X 6 VIEPSGPEL-VVEPGETVTLRCVSNG------SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELED 73 (289)
T ss_dssp EEESCSSEE-EECTTCCEEEEEECSS------CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred EecCCCceE-EECCCCCEEEEEEeCC------cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence 334555666 8999999999999873 49999877432 12223334458999999999999999999998
Q ss_pred CcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeec
Q psy2145 131 VGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPV 210 (808)
Q Consensus 131 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~ 210 (808)
.|.....+.|.|... +..+...+....+.+|+++.|.|.+ .
T Consensus 74 ~~~~~~~~~l~V~~~-------------------------------------~~~~~~~~~~~~v~~g~~v~L~C~~--~ 114 (289)
T 3ejj_X 74 PMAGSTTIHLYVKDP-------------------------------------AHSWNLLAQEVTVVEGQEAVLPCLI--T 114 (289)
T ss_dssp ----CEEEEEEECCS-------------------------------------SCSEEESCSEEEEETTSCEEECEEE--S
T ss_pred CCcceeEEEEEEeCC-------------------------------------CcceecccceEEEecCCceEeEEEc--c
Confidence 888888888888532 1125566677889999999999999 4
Q ss_pred CCCCeE-EEEee-CCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE-eCceeEEEEEEEEEeeCCcccccccc
Q psy2145 211 SDNTMK-VEWFH-NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV-NALGQAVTSGNLLVHSKKSIQTETQH 287 (808)
Q Consensus 211 ~~p~~~-v~W~~-~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-n~~g~~~~~~~l~V~~~~~i~~~~~~ 287 (808)
+.+.+. +.|++ +|..+..+.++....++ .|.|.++..+|+|.|+|.|. |..+.....+.|.|...
T Consensus 115 ~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~--------- 182 (289)
T 3ejj_X 115 DPALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV--------- 182 (289)
T ss_dssp CGGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS---------
T ss_pred CCCcceEEEEEecCCeecCCCccEEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC---------
Confidence 555554 99986 78888777777665544 69999999999999999999 55566667788888642
Q ss_pred cchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC-CCccEEEEEECCEeccCCCcEEE
Q psy2145 288 GESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVST 366 (808)
Q Consensus 288 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~~ 366 (808)
...+|.+...+....+.+|+.+.|.|.+ .+ .|.+.+.|+++|..+........
T Consensus 183 ------------------------~~~~p~i~~~~~~~~~~~g~~~~l~C~~--~~~~p~~~i~W~~~~~~~~~~~~~~~ 236 (289)
T 3ejj_X 183 ------------------------HPEPPQIKLEPSKLVRIRGEAAQIVCSA--TNAEVGFNVILKRGDTKLEIPLNSDF 236 (289)
T ss_dssp ------------------------CCCCCEEEEESSSEECCSSSCEEEEEEE--EESSSCCEEEEEETTEECCCCEEEEE
T ss_pred ------------------------CCCCCeEEecCCceEEEeCCcEEEEEEe--CCCCCceEEEEEECCEEeeccCCccc
Confidence 1236777777777777899999999999 55 78999999999998876433221
Q ss_pred Eee--CcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy2145 367 MHD--FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411 (808)
Q Consensus 367 ~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 411 (808)
... ....+|.|.++..+|+|.|+|.|.|..|...+++.|.+...+
T Consensus 237 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 237 QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 111 123489999999999999999999999999999999887653
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=285.80 Aligned_cols=407 Identities=12% Similarity=0.140 Sum_probs=236.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCC--ceEEEEeC--CEE---ee-------------ccCcEEEEee--CCeEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSN--LKVEWFKN--GRP---VT-------------IGHRFRPIHD--FGYVAL 110 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~--~~v~W~~~--g~~---l~-------------~~~r~~~~~~--~~~~~L 110 (808)
+..|..+ .+.+|++++|.|.+.+..... ..+.|||+ |.. |. ...|+.+..+ .+.++|
T Consensus 4 l~qp~~v-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 82 (512)
T 1zvo_C 4 LQESGPG-LVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSL 82 (512)
T ss_pred EECCCCE-EEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEE
Confidence 4567777 899999999999998421122 68999985 321 11 1357776654 346799
Q ss_pred EEcccCcCCCeeEEEEEEecCc-----------c--eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccc
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVG-----------F--AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIE 177 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (808)
.|.+++.+|+|.|.|.+.+..+ . ....+.|.|....
T Consensus 83 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~------------------------------- 131 (512)
T 1zvo_C 83 NLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP------------------------------- 131 (512)
T ss_pred EECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC-------------------------------
Confidence 9999999999999999988642 0 1234566665321
Q ss_pred cccCCCCeEEe-ecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCc----eEEEEEccCCCC
Q psy2145 178 ETTTQAPIFTT-SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFG----FVALDIMQCLPE 251 (808)
Q Consensus 178 ~~~~~~P~~~~-~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~ 251 (808)
..+|.+.. .+.......|+.++|.|.+.+ ..|. +.|.|++++..............+| ...|.|.....+
T Consensus 132 ---~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~ 207 (512)
T 1zvo_C 132 ---TKAPDVFPIISGCRHPKDNSPVVLACLITG-YHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR 207 (512)
T ss_pred ---CcCCeEEeccCCcccccCCCeEEEEEEEEe-eecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC
Confidence 23455442 222121235789999999963 3365 4999999765321000000111112 125889888777
Q ss_pred CcEEEEEEEEeCceeEEEEE-----------EEEEeeCCcccccc--cccchhhhhhhhhcc--------------ccc-
Q psy2145 252 DSGVYTCRAVNALGQAVTSG-----------NLLVHSKKSIQTET--QHGESLSRLQQLEQG--------------RYQ- 303 (808)
Q Consensus 252 D~G~Y~C~a~n~~g~~~~~~-----------~l~V~~~~~i~~~~--~~~~~~~~~~~~e~~--------------~~~- 303 (808)
.|.|+|.|.|..|.....+ .+.|..+|.+.-.- -.+ .... +.++ .+.
T Consensus 208 -~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~-~~~~---~~~g~~~~~~~~~~~~~~~h~~ 282 (512)
T 1zvo_C 208 -QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATT-APAT---TRNTGRGGEEKKKEKEKEEQEE 282 (512)
T ss_pred -CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhcccccccc-Cchh---hccCcccccceeccCCcccccc
Confidence 9999999999888655443 23333222100000 000 0000 0000 000
Q ss_pred cccccc--cccCCCCe-eccCCCceEeecCCeEEEEEEEeecCC-C-ccEEEEEECCEeccCCC--cEEEEeeCc----E
Q psy2145 304 RTSIIE--DTVSQAPV-FTQPMRDIHVAENQAAHFEARLIPVGD-S-KLKVTWLRNGVPIQASN--RVSTMHDFG----Y 372 (808)
Q Consensus 304 ~~~~~~--~~~~~~p~-~~~~~~~~~v~~G~~~~l~C~~~~~g~-p-~~~v~W~~~g~~l~~~~--~~~~~~~~~----~ 372 (808)
...... .....+|. +..++....+.+|+.+.|.|.+ .|. | ...|+|+++|..+.... .......++ .
T Consensus 283 ~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v--~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~ 360 (512)
T 1zvo_C 283 RETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFV--VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQH 360 (512)
T ss_pred cCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEE--eceECCCeEEEEEECCEeccCceeccceecCCCCeEEEE
Confidence 000000 00112344 3444444567789999999999 454 4 35999999999876221 111111222 2
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeE
Q psy2145 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFT 452 (808)
Q Consensus 373 ~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 452 (808)
+.|.|..+..+|.|.|+|.|.|..+... ...+.......
T Consensus 361 s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~---------------------------------------- 399 (512)
T 1zvo_C 361 SRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQ---------------------------------------- 399 (512)
T ss_pred EEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCC----------------------------------------
Confidence 4699999999999999999999877543 22222110000
Q ss_pred EecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceE-EEEEEeeC
Q psy2145 453 VQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAH-FSCRLIPV 531 (808)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~-l~C~v~~~ 531 (808)
...+|.+...... . +|+.+. |.|.+ .
T Consensus 400 -----------------------------------------------~~~~p~v~~~~~~---~-~~~~~~~L~C~~--~ 426 (512)
T 1zvo_C 400 -----------------------------------------------APVKLSLNLLASS---D-PPEAASWLLCEV--S 426 (512)
T ss_pred -----------------------------------------------CCCCCEEEEEccC---c-CCCCceEEEEEE--e
Confidence 0012222211111 1 688999 99999 6
Q ss_pred CC-CC-cEEEEEECCEecCCCCCe----EEEeeCc-E---EEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 532 GD-PT-LKVEWFRNEKPLEDSSRI----TTKHDFG-Y---VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 532 g~-P~-~~v~W~k~g~~l~~~~~~----~~~~~~~-~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
|. |. ..|+|+|||+++...... ....++. + ..|.|.....+|.|.|+|.|.|............+
T Consensus 427 g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~ 501 (512)
T 1zvo_C 427 GFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSL 501 (512)
T ss_pred eeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEE
Confidence 64 43 468999999999764311 1122222 2 35888888888899999999998765444444333
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=267.75 Aligned_cols=251 Identities=18% Similarity=0.267 Sum_probs=192.6
Q ss_pred CeeccCCCceEeecCCeEEEEEEEeecCCCcc-EEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEc
Q psy2145 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVN 394 (808)
Q Consensus 316 p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 394 (808)
|.|...+....+.+|+.+.|.|.+ .+.|.+ .++|+++|..+.... . .|.|.++..+|+|.|+|.|.|
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~--~~~~~~~~~~W~~~g~~~~~~~--------~--~l~i~~~~~~d~G~Y~C~~~~ 69 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEV--LHLPGSSSTQWFLNGTATQTST--------P--SYRITSASVNDSGEYRCQRGL 69 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEEC--SSCCCTTCEEEEETTEECSCCS--------S--EEEESSCCGGGCEEEEEEESS
T ss_pred CeEecCCCcEEeeCCCeEEEEEEC--CCCCCCceEEEEECCEEeeccC--------C--eEEEecCCcccCeEEEEEEec
Confidence 567777777889999999999998 677777 999999999986542 2 699999999999999999998
Q ss_pred CCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccC
Q psy2145 395 ELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQH 474 (808)
Q Consensus 395 ~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (808)
..++. .+.|.|...+
T Consensus 70 ~~~s~--~~~l~v~~~~--------------------------------------------------------------- 84 (262)
T 3rjd_A 70 SGRSD--PIQLEIHRGW--------------------------------------------------------------- 84 (262)
T ss_dssp SCCCC--CEEEEEECSS---------------------------------------------------------------
T ss_pred CCccc--cEEEEEeccc---------------------------------------------------------------
Confidence 76654 4556665321
Q ss_pred CchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE
Q psy2145 475 PKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT 554 (808)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~ 554 (808)
....+ ... .+.+|+.+.|.|.+. .+.|.+.+.|+|+|..+...
T Consensus 85 ------------------------------~~~~~-~~~-~~~~g~~v~l~C~~~-~~~p~~~v~W~~~g~~~~~~---- 127 (262)
T 3rjd_A 85 ------------------------------LLLQV-SSR-VFTEGEPLALRCHAW-KDKLVYNVLYYRNGKAFKFF---- 127 (262)
T ss_dssp ------------------------------EEEEE-SCS-EEETTSCEEEEEEEG-GGCCCEEEEEEETTEEEEEE----
T ss_pred ------------------------------eEecC-CCe-EEecCCeEEEEEEcc-CCCCCceEEEEECCcccccc----
Confidence 01111 111 467899999999984 57888999999999987421
Q ss_pred EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccC
Q psy2145 555 TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634 (808)
Q Consensus 555 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~ 634 (808)
...+ .|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.....
T Consensus 128 --~~~~--~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~--------------------------------- 170 (262)
T 3rjd_A 128 --HWNS--NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP--------------------------------- 170 (262)
T ss_dssp --EECC--CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSC---------------------------------
T ss_pred --CCCC--eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCC---------------------------------
Confidence 1122 699999999999999999999999888888998886321
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCC-e----EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-M----RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~-p----~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
+|.+.... ...+.+|+.+.|.|.+ .|.|. | .+.|+++|..+... .....|.|.++..+|+|.|
T Consensus 171 ~p~~~~~~--~~~~~~g~~~~l~C~~--~~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y 238 (262)
T 3rjd_A 171 APVLNASV--TSPLLEGNLVTLSCET--KLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLY 238 (262)
T ss_dssp CCEEEESS--CSSEETTCCEEEEEEC--CCCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEE
T ss_pred CCeEeecC--ceeecCCCeEEEEeEc--ccCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEE
Confidence 24444433 3468899999999999 78875 5 37899999987632 2334899999999999999
Q ss_pred EEEEEeCCcceEE---EEEEEEE
Q psy2145 710 MCKAINRAGEAVS---STSLKVK 729 (808)
Q Consensus 710 ~C~A~N~~G~~~~---s~~l~V~ 729 (808)
+|.|.|..|.... .+.|.|+
T Consensus 239 ~C~a~n~~G~~~~~s~~~~l~V~ 261 (262)
T 3rjd_A 239 WCEAATEDGNVLKRSPELELQVL 261 (262)
T ss_dssp EEEEEETTSSCEEECCCEEECEE
T ss_pred EEEEEcccCceEEecCCeEEEEe
Confidence 9999999997532 3445443
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-29 Score=274.77 Aligned_cols=368 Identities=17% Similarity=0.159 Sum_probs=254.0
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEccC-----CCceEEEecCceEEEEEccCCCCCcEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIKS-----GSRFTETNNFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~ 255 (808)
+|.|.. +.+..+.+|+++.|.|.+ .+.|.+.|.|+|+ |..+.. ..++.+..+.+..+|.|.+++.+|+|.
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~--~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 77 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDA--EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEE--ECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEe--ecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEE
Confidence 466765 667788899999999999 5889999999999 998865 456777666667799999999999999
Q ss_pred EEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEE
Q psy2145 256 YTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335 (808)
Q Consensus 256 Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l 335 (808)
|+|.|.|..|....++.|.|.. +|.+...+....+.+|+.+.|
T Consensus 78 Y~C~a~n~~g~~~~~~~l~V~~-------------------------------------~P~~~~~~~~~~~~~g~~~~l 120 (389)
T 2jll_A 78 YDCEAASRIGGHQKSMYLDIEY-------------------------------------APKFISNQTIYYSWEGNPINI 120 (389)
T ss_dssp EEEEEECSSCEEEEEEEEEEEE-------------------------------------EEEECCSCCEEEECTTCCEEE
T ss_pred EEEEEEeCCCCcceEEEEEEEe-------------------------------------CCEEecCcceEEeccCCEEEE
Confidence 9999999999998899999875 455555555557889999999
Q ss_pred EEEEeecCCCccEEEEEECCEeccCCC--cEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEEecccc
Q psy2145 336 EARLIPVGDSKLKVTWLRNGVPIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASL 413 (808)
Q Consensus 336 ~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 413 (808)
.|.+ .|.|.+.|.|+++|..+.... ++.+..++....|.|.++..+|+|.|+|.|.|..|....++.+.|...|..
T Consensus 121 ~C~~--~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~ 198 (389)
T 2jll_A 121 SCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS 198 (389)
T ss_dssp EECE--EEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCC
T ss_pred EEEE--EecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCC
Confidence 9999 788999999999999998754 677776666778999999999999999999999999888777777543311
Q ss_pred cccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCC
Q psy2145 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRP 493 (808)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (808)
|.
T Consensus 199 -----------------------------------P~------------------------------------------- 200 (389)
T 2jll_A 199 -----------------------------------PY------------------------------------------- 200 (389)
T ss_dssp -----------------------------------CE-------------------------------------------
T ss_pred -----------------------------------Cc-------------------------------------------
Confidence 10
Q ss_pred CcCCCCccCCCeeeecCCCcccccCCCceEEEEEEe--eCCCCCc--EEEEEECCEecCCCCCeEEEeeCcEEEEEECCC
Q psy2145 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLI--PVGDPTL--KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHV 569 (808)
Q Consensus 494 ~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~--~~g~P~~--~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v 569 (808)
.... ....+..+.|.|..- ..|.|.. .+.|++++... ............|.|.++
T Consensus 201 ------------~~~~-----~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~----~~~~~~~~~~~~~~i~~l 259 (389)
T 2jll_A 201 ------------GVKI-----IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI----WKIVRSHGVQTMVVLNNL 259 (389)
T ss_dssp ------------EEEE-----EEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC----CEEEECSTTCSEEEECSC
T ss_pred ------------ceEE-----eeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc----cEEeeccCCcceEEECCc
Confidence 0000 112356788888641 0233433 57888876522 112222222337999999
Q ss_pred CCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 570 RAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
...|.|.|+|.|.|..|....+..+.+...+.. ...+|.+... ..
T Consensus 260 ~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~-----------------------------~p~~p~~~~~------~~ 304 (389)
T 2jll_A 260 EPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR-----------------------------EPSPPSIHGQ------PS 304 (389)
T ss_dssp CTTCEEEEEEEEEESSCBCCCCCCEEEECCCCC-----------------------------CCCCCCEEEE------EE
T ss_pred cCCCEEEEEEEEEcCCccCCCCcceEEEecCCC-----------------------------CCCCCccccc------cC
Confidence 999999999999999997765555544432110 0012433221 12
Q ss_pred CCceEEEEEEEeeC-CCCCeEE--EEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 650 EGQSAHYDCRVVPV-GDPTMRF--EWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 650 ~G~~v~l~C~v~~~-g~P~p~i--~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.+..+.|.+..-.. |.|...+ .|...+..-. ............+.|.++.+.-...|++.|.|..|....+. +
T Consensus 305 ~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~-~ 380 (389)
T 2jll_A 305 SGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQ---WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTV-Y 380 (389)
T ss_dssp TTTEEEEEECCCCCCSSCCCEEEEEEEC-----C---CBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEE-E
T ss_pred cCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcc---eeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCcee-e
Confidence 46678888864111 1222233 3332121100 00111123334688999999999999999999999765553 3
Q ss_pred EEEe
Q psy2145 727 KVKS 730 (808)
Q Consensus 727 ~V~~ 730 (808)
.+..
T Consensus 381 ~~~T 384 (389)
T 2jll_A 381 EFSM 384 (389)
T ss_dssp EEEC
T ss_pred EecC
Confidence 4443
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=288.28 Aligned_cols=279 Identities=18% Similarity=0.239 Sum_probs=175.8
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCC-----------CceEEEEeCCE------Eee---ccCcEEEEeeCCeEEEEEcc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDS-----------NLKVEWFKNGR------PVT---IGHRFRPIHDFGYVALDIID 114 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p-----------~~~v~W~~~g~------~l~---~~~r~~~~~~~~~~~L~I~~ 114 (808)
.+.++ .+.+|+.+.|.|.+.+ .| .+.|.|+|+|. .+. .+.++ ...++ +|.|.+
T Consensus 13 ~~~~v-~v~~G~~v~L~C~~~~--~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~~~~~--~L~i~~ 85 (349)
T 4dep_C 13 TMRQI-QVFEDEPARIKCPLFE--HFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI--SKEKD--VLWFRP 85 (349)
T ss_dssp CCCCC-EEETTSCEEEECTCCC--CCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCE--EEETT--EEEESS
T ss_pred eeeeE-EEecCCeEEEEccccc--cccccccccccCCCceEEEEECCCCCcccccccccccCceE--eecCC--EEEEcc
Confidence 34556 8999999999999984 44 48999999884 222 22333 23333 799999
Q ss_pred cCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCcee
Q psy2145 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 194 (808)
++.+|+|.|+|.|.|..|....++.|.|...+... ++ ....+....
T Consensus 86 ~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~---------------------------------~~-~~~~~~~~~ 131 (349)
T 4dep_C 86 TLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCF---------------------------------NS-PMKLPVHKL 131 (349)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTS---------------------------------CC-SCCCCEEEE
T ss_pred CChhhCEEEEEEEecCCceEEEEEEEEEecCCccc---------------------------------Cc-ccccCccee
Confidence 99999999999999999988888999997543211 11 112234557
Q ss_pred ecCCCeEEEEEEEee---cCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc-eeE---
Q psy2145 195 IKEGQRAHFECRLIP---VSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL-GQA--- 267 (808)
Q Consensus 195 v~~G~~v~L~C~~~~---~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~--- 267 (808)
+.+|+.+.|.|.+.. .+.|.+.|.|+|||.++....++.... . .|.|.+++.+|+|.|+|.|.|.. |..
T Consensus 132 ~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~--~--~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~ 207 (349)
T 4dep_C 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG--M--NLSFLIALISNNGNYTCVVTYPENGRTFHL 207 (349)
T ss_dssp ETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEET--T--EEEEESCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred eecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecC--C--EEEEeeeeecCCcEEEEEEEEeeCCEEEEE
Confidence 889999999997410 368899999999999997655444332 2 79999999999999999999976 544
Q ss_pred EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCce--EeecCCeEEEEEEEeec--C
Q psy2145 268 VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDI--HVAENQAAHFEARLIPV--G 343 (808)
Q Consensus 268 ~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~--~v~~G~~~~l~C~~~~~--g 343 (808)
...+.|.|..++. ...+|.+..+.... .+.+|+.+.|.|.+... |
T Consensus 208 ~~~~~l~v~~~~~-------------------------------~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g 256 (349)
T 4dep_C 208 TRTLTVKVVGSPK-------------------------------NAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256 (349)
T ss_dssp EEEEEEEEECCGG-------------------------------GCCSCEEC----------------CCCEEEEECCCT
T ss_pred EEEEEEEEEccCC-------------------------------CCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCC
Confidence 4556666654221 11256666655443 78899999999999322 6
Q ss_pred CCccEEEEEECCEeccC-CCcEEEEe-------e--CcEEEEEEccCCCCCC-eEEEEEEEcCCcceEEEEEEEEEe
Q psy2145 344 DSKLKVTWLRNGVPIQA-SNRVSTMH-------D--FGYVALNFKYTYPEDS-GTYTCRAVNELGEAVTSSTLFVES 409 (808)
Q Consensus 344 ~p~~~v~W~~~g~~l~~-~~~~~~~~-------~--~~~~~L~I~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~V~~ 409 (808)
.|.+.|.|+++|..+.. ..++.+.. + ....+|.|.++..+|+ |.|+|.|.|..|....++.|.|..
T Consensus 257 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 257 DSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp TCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred CCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 78999999999998876 22222210 1 1234599999999999 999999999999999998888865
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=280.38 Aligned_cols=275 Identities=16% Similarity=0.217 Sum_probs=198.4
Q ss_pred CCeeccCCCceEeecCCeEEEEEEEeecCC----CccEEEEEECC--Ee-------------c--cCCCcEEEEe-eCcE
Q psy2145 315 APVFTQPMRDIHVAENQAAHFEARLIPVGD----SKLKVTWLRNG--VP-------------I--QASNRVSTMH-DFGY 372 (808)
Q Consensus 315 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~----p~~~v~W~~~g--~~-------------l--~~~~~~~~~~-~~~~ 372 (808)
++.+...+..+.+.+|+.+.|.|.+ .+. +.+.|.|++++ .. + ....|+.+.. ..+.
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 91 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSF--ANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91 (331)
T ss_dssp -------CEEEEEETTCCEEECCBC--SSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSB
T ss_pred CcceEEcCCcEEEEecCCEEEeeec--CCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCC
Confidence 3445566667889999999999998 555 56789999954 11 1 1234555431 1223
Q ss_pred EEEEEccCCCCCCeEEEEE-EEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCee
Q psy2145 373 VALNFKYTYPEDSGTYTCR-AVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSF 451 (808)
Q Consensus 373 ~~L~I~~v~~~d~G~Y~C~-a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 451 (808)
.+|.|.++..+|+|.|+|. +.|..|.....+.|.|..+|.+..
T Consensus 92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~------------------------------------ 135 (331)
T 3u83_A 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWI------------------------------------ 135 (331)
T ss_dssp CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE------------------------------------
T ss_pred ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCccee------------------------------------
Confidence 4799999999999999998 666678777788888876543210
Q ss_pred EEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCC---CceEEEEE-
Q psy2145 452 TVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEG---KNAHFSCR- 527 (808)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G---~~v~l~C~- 527 (808)
...... ..+.+| +.+.|.|.
T Consensus 136 -------------------------------------------------------~~~~~~-~~~~~g~~~~~~~l~C~~ 159 (331)
T 3u83_A 136 -------------------------------------------------------EGTQAV-LRAKKGQDDKVLVATCTS 159 (331)
T ss_dssp -------------------------------------------------------EECSSC-EEECTTCCCCEEEEEEEE
T ss_pred -------------------------------------------------------ecCCCc-eeecCCCccceEEEEEEe
Confidence 001111 146677 78999998
Q ss_pred EeeCCCCCcEEEEEECCEecC-------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 528 LIPVGDPTLKVEWFRNEKPLE-------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 528 v~~~g~P~~~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
+ .+.|.+.++|+|++.... ....+.+. ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 160 ~--~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P 232 (331)
T 3u83_A 160 A--NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI-----SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEP 232 (331)
T ss_dssp E--EEBSCCEEEEEESSCCEEEEEEEECTTSCEEEE-----EEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEE
T ss_pred c--CCcCCceEEEEcCCCCccccceeECCCCcEEEE-----EEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCC
Confidence 5 789999999999632211 11222211 269999999999999999999999999999999987653
Q ss_pred cccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEc
Q psy2145 601 GLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVEL 679 (808)
Q Consensus 601 ~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l 679 (808)
.+.........+.+|+.+.|.|.+ .|.|.|. |.|+++|..+
T Consensus 233 ------------------------------------~~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~~i~W~~~~~~~ 274 (331)
T 3u83_A 233 ------------------------------------EVTIEGFDGNWYLQRMDVKLTCKA--DANPPATEYHWTTLNGSL 274 (331)
T ss_dssp ------------------------------------EEEEECCCSCCBTTCCCEEEEEEE--EEESCCCEEEEEETTBSC
T ss_pred ------------------------------------eEEEecCCCceEeCCCeEEEEEeC--cCCCCCCEEEEEECCCcc
Confidence 333333334568899999999999 7999998 9999999988
Q ss_pred cCCCcEEEEEeCCEEEEEEc-cCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCc
Q psy2145 680 KMGSRFHVQHDFGYVTLDIT-KCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 680 ~~~~~~~~~~~~~~~~L~I~-~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
..+.. + .++ +|.|. ++..+|+|.|+|.|.|.+|..+.++.|.|..++.-
T Consensus 275 ~~~~~--~--~~~--~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 324 (331)
T 3u83_A 275 PKGVE--A--QNR--TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL 324 (331)
T ss_dssp CTTEE--E--ETT--EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred cccce--e--cCc--EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence 65422 2 233 79999 99999999999999999999999999999887653
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=287.92 Aligned_cols=272 Identities=17% Similarity=0.250 Sum_probs=202.7
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee----ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~----~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
..+ .+.+|+.+.|.|.+.+ ..+.+.|.|+|+|..+. .+.|+... ++ +|.|.+++.+|+|.|+|.|.|..|
T Consensus 13 ~~~-~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~n~~g 86 (315)
T 1itb_B 13 IIL-VSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH--KE--KLWFVPAKVEDSGHYYCVVRNSSY 86 (315)
T ss_dssp CCC-EEETTSCCCCBCCCCS-CCCSSCCCEECTTSCSCSCCCTTSSSEEC--SS--BEECTTCCGGGCSCCEECCCSSSC
T ss_pred eEE-EEcCCCcEEEEeeccC-cCCCceEEEEeCCCcCccccccCCcEecc--CC--eEEECCCChhhCEEEEEEEeCCce
Confidence 344 8999999999999985 23377999999986532 23444432 22 699999999999999999999988
Q ss_pred ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeec---CceeecCCCeEEEEEEEe-
Q psy2145 133 FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL---KNCEIKEGQRAHFECRLI- 208 (808)
Q Consensus 133 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~~v~~G~~v~L~C~~~- 208 (808)
.....+.+.|... +|.+...+ ....+.+|+++.|.|.+.
T Consensus 87 ~~~~~~~v~v~~~-------------------------------------~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~ 129 (315)
T 1itb_B 87 CLRIKISAKFVEN-------------------------------------EPNLCYNAQAIFKQKLPVAGDGGLVCPYME 129 (315)
T ss_dssp CCCEECCCEEECC-------------------------------------CTTSSSCGGGEEEEEEETTSCEEEECSSCT
T ss_pred EEEEEEEEEEeCC-------------------------------------CCCcccccccccceEEecCCCeEEEEeccc
Confidence 8777666665432 22222121 235688999999999871
Q ss_pred ---ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE-eCceeEE---EEEEEEEeeCCcc
Q psy2145 209 ---PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV-NALGQAV---TSGNLLVHSKKSI 281 (808)
Q Consensus 209 ---~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-n~~g~~~---~~~~l~V~~~~~i 281 (808)
..+.|.+.+.|+|+|.++..+....... ++ .|.|.+++.+|+|.|+|.|. |..|... ....+.+....
T Consensus 130 ~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~-~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~-- 204 (315)
T 1itb_B 130 FFKNENNELPKLQWYKDCKPLLLDNIHFSGV-KD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-- 204 (315)
T ss_dssp TTCTTTTCCCCCEEEETTEECCCCSSSEEEE-TT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC--
T ss_pred ccccCCCCCCEEEEEECCEECCCccceEeec-Cc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC--
Confidence 1378889999999999996543322222 23 89999999999999999999 7878763 33344333211
Q ss_pred cccccccchhhhhhhhhccccccccccccccCCCCeeccCCCc-eEeecCCeEEEEEEEeecCCCccEEEEEECCEeccC
Q psy2145 282 QTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRD-IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQA 360 (808)
Q Consensus 282 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~ 360 (808)
...+|.+..++.. ..+.+|+.+.|.|.+ .|.|.+.|.|++||..+..
T Consensus 205 ------------------------------~~~~P~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~i~W~~~g~~i~~ 252 (315)
T 1itb_B 205 ------------------------------KPTRPVIVSPANETMEVDLGSQIQLICNV--TGQLSDIAYWKWNGSVIDE 252 (315)
T ss_dssp ------------------------------CCCCCEECSCCSEEEECCSSSCEEEEEEE--EECTTSEEEEEETTEECCT
T ss_pred ------------------------------CCCCCEEecCCCCcEEEeCCCcEEEEEEE--ecCCCCeeEEEECCEECCc
Confidence 1247777766654 578999999999999 7899999999999999987
Q ss_pred CCcEEE-----Eee-------CcEEEEEEccCCCCC-CeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 361 SNRVST-----MHD-------FGYVALNFKYTYPED-SGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 361 ~~~~~~-----~~~-------~~~~~L~I~~v~~~d-~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
+.+... ... .....|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp TCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 653211 111 123489999999999 999999999999999998888875
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=285.93 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=193.2
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-----------------CCceEEEe-cCceEEEEEccCCCCCc
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-----------------GSRFTETN-NFGFVALDIMQCLPEDS 253 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-----------------~~~~~~~~-~~~~~~L~I~~~~~~D~ 253 (808)
++.+.+|++++|.|.+. .+.+.+.|+|+|++..... ..++.... ..+..+|.|.+++.+|+
T Consensus 8 ~vtv~~G~~v~L~C~v~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIE-VNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp SCEEETTSCEEECCBCC-CSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred EeEEEcCCcEEEEEEec-CCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 56788999999999985 2556678999996532210 11222211 12334799999999999
Q ss_pred EEEEEEEEeC-ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCe
Q psy2145 254 GVYTCRAVNA-LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQA 332 (808)
Q Consensus 254 G~Y~C~a~n~-~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~ 332 (808)
|.|+|.|.|. .|.....+.+.+...+. +.+...+.......|+.
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~-----------------------------------~~~~~~~~~~~~~~~~~ 131 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPT-----------------------------------VSLIKGPDSLIDGGNET 131 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCE-----------------------------------EEEEECSSCCCTTCSCE
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccc-----------------------------------cccccccceeEEcCCce
Confidence 9999999985 66777777777765331 12222333444567899
Q ss_pred EEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEe-eCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE--EEEEEEe
Q psy2145 333 AHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS--STLFVES 409 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~ 409 (808)
+.|.|.+. .|.|.+.|+|+++|.++.......... ......|.|..+..+|+|.|+|.|.|..|....+ +.|.|..
T Consensus 132 ~~l~C~~~-~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~ 210 (308)
T 4fom_A 132 VAAICIAA-TGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY 210 (308)
T ss_dssp EEEEEEEE-EEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE
T ss_pred EEEEEEec-CCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec
Confidence 99999863 689999999999998875432111000 1122469999999999999999999988765444 4444443
Q ss_pred cccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCC
Q psy2145 410 KASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEP 489 (808)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (808)
+|
T Consensus 211 ~P------------------------------------------------------------------------------ 212 (308)
T 4fom_A 211 AP------------------------------------------------------------------------------ 212 (308)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 32
Q ss_pred CCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCCCCeEEEeeCcEEEEEECC
Q psy2145 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568 (808)
Q Consensus 490 ~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~ 568 (808)
.+.....+...+.+|+.+.|.|.+ .|.|.| .+.|+|+|..+..+... . +...|.|.+
T Consensus 213 ---------------~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~~v~W~k~~~~~~~~~~~----~-~~~~l~i~~ 270 (308)
T 4fom_A 213 ---------------EVSVTGYDGNWFVGRKGVNLKCNA--DANPPPFKSVWSRLDGQWPDGLLA----S-DNTLHFVHP 270 (308)
T ss_dssp ---------------EECCBCCCSCEETTCCSCEEECCE--EEESCEEEEECCBSSSCCCSSCBC----S-TTEEECCSC
T ss_pred ---------------eeEEcccceeeeeccccEEEEEEE--ecCCCCcEEEEEECCeECCCcEEE----c-CCeEEEECC
Confidence 222222222246789999999999 789988 69999999988754321 1 223678999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
++.+|+|.|+|.|.|..|..++++.|.|..+|
T Consensus 271 v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 271 LTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp CCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred CChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 99999999999999999999999999998765
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-31 Score=279.17 Aligned_cols=275 Identities=19% Similarity=0.278 Sum_probs=183.1
Q ss_pred CeeccCCCceEeecCCeEEEEEEEeecCC-CccEEEEEECCEecc---------CCCcEEEEee-----CcEEEEEEccC
Q psy2145 316 PVFTQPMRDIHVAENQAAHFEARLIPVGD-SKLKVTWLRNGVPIQ---------ASNRVSTMHD-----FGYVALNFKYT 380 (808)
Q Consensus 316 p~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~~l~---------~~~~~~~~~~-----~~~~~L~I~~v 380 (808)
..|+.++..+.+.+|+.+.|.|.+ .+. |.+.|+|+|+|.++. ...++....+ .+..+|.|.++
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~--~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v 81 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTV--TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI 81 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEE--SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred eEEEcCCCceEEecCCcEEEEEEc--cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence 356677788899999999999999 676 888999999986432 1124443322 33447999999
Q ss_pred CCCCCeEEEEEEEcCCcceE-----EEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEec
Q psy2145 381 YPEDSGTYTCRAVNELGEAV-----TSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQL 455 (808)
Q Consensus 381 ~~~d~G~Y~C~a~n~~g~~~-----~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 455 (808)
..+|+|.|+|.|.|..|... ..+.|.|...+.
T Consensus 82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~------------------------------------------- 118 (327)
T 2wng_A 82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPS------------------------------------------- 118 (327)
T ss_dssp CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCC-------------------------------------------
T ss_pred ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCC-------------------------------------------
Confidence 99999999999999876421 235666664321
Q ss_pred CCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC
Q psy2145 456 NGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT 535 (808)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~ 535 (808)
+|.+..+ . ..+.+|+.+.|.|.+ .|.|+
T Consensus 119 -----------------------------------------------~p~i~~~--~-~~~~~g~~~~l~C~~--~g~p~ 146 (327)
T 2wng_A 119 -----------------------------------------------APVVSGP--A-ARATPQHTVSFTCES--HGFSP 146 (327)
T ss_dssp -----------------------------------------------CCEEECC--S-SCBCTTCEEEEEEEE--EEEBS
T ss_pred -----------------------------------------------Cceeecc--c-cccCCCCEEEEEEEE--eCccC
Confidence 1222211 1 257889999999999 56665
Q ss_pred c--EEEEEECCEecCCCCCeEEEe-eCc----EEEEEECCCCCCCCEEEEEEEEeCCeeE---EEEEEEEEEeccccccc
Q psy2145 536 L--KVEWFRNEKPLEDSSRITTKH-DFG----YVAMDLSHVRAEDEGIYICKATNALGEA---VTTASMKIKTKAGLQLE 605 (808)
Q Consensus 536 ~--~v~W~k~g~~l~~~~~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~---~~s~~l~V~~~~~i~~~ 605 (808)
+ .|+|+|||+.+..+....... .++ ...|.|.....+|.|.|+|.|.|..|.. ..++.+.+..
T Consensus 147 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v------- 219 (327)
T 2wng_A 147 RDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI------- 219 (327)
T ss_dssp SCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB-------
T ss_pred CCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc-------
Confidence 5 899999999987543211111 111 1258888888788999999999998763 2333332111
Q ss_pred ccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCC
Q psy2145 606 TQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGS 683 (808)
Q Consensus 606 ~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~ 683 (808)
..+|.+...... +.+|+.+.|.|.+ .|. |++ .|.|+|||+++..+.
T Consensus 220 ---------------------------~~~P~i~~~~~~---~~~G~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~ 267 (327)
T 2wng_A 220 ---------------------------RVPPTLEVTQQP---VRAENQVNVTCQV--RKFYPQRLQLTWLENGNVSRTET 267 (327)
T ss_dssp ---------------------------CBCCEEEEEEEC---CSSTTCCEEEEEE--EEEBSSCEEEEEEETTEEEEEEE
T ss_pred ---------------------------CCCCEEEEecCC---cCCCCcEEEEEEE--ccccCCCcEEEEEECCeEccCcc
Confidence 134666655432 7899999999999 674 443 899999999987532
Q ss_pred cEEEEEe-CC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 684 RFHVQHD-FG----YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 684 ~~~~~~~-~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
...+... ++ .+.|.|..+..+|+|.|+|.|.|..|...+...+
T Consensus 268 ~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~ 315 (327)
T 2wng_A 268 ASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHD 315 (327)
T ss_dssp CCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEE
T ss_pred cCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheE
Confidence 2222221 22 1579999999999999999999999976554433
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=278.11 Aligned_cols=274 Identities=18% Similarity=0.243 Sum_probs=201.5
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
.+|.|...+....+.+|+.+.|.|.+ .+. |.|++++.. +.....++...+|.|.++..+|+|.|+|.|.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~--~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 71 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVG--NGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEEC--SSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCC
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcC--CCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEc
Confidence 47888888888899999999999998 553 999976542 2333444556689999999999999999999
Q ss_pred cCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEeccc
Q psy2145 394 NELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473 (808)
Q Consensus 394 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (808)
|..|.....+.|.|..++..
T Consensus 72 n~~~~~~~~~~l~V~~~~~~------------------------------------------------------------ 91 (292)
T 4dkd_C 72 GDPLGGSAAIHLYVKDPARP------------------------------------------------------------ 91 (292)
T ss_dssp C----CCEEECCEECCSSCC------------------------------------------------------------
T ss_pred cCCCCcceEEEEEEcCcccc------------------------------------------------------------
Confidence 98888877777877654321
Q ss_pred CCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC--cEEEEEEC-CEecCCC
Q psy2145 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT--LKVEWFRN-EKPLEDS 550 (808)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~--~~v~W~k~-g~~l~~~ 550 (808)
|.....+. .+.+|+.+.|.|.+ .+ |. +.+.|+++ +..+...
T Consensus 92 --------------------------------~~~~~~~~-~v~~g~~v~l~C~~--~~-~~~~~~v~W~~~~~~~~~~~ 135 (292)
T 4dkd_C 92 --------------------------------WNVLAQEV-VVFEDQDALLPCLL--TD-PVLEAGVSLVRVRGRPLMRH 135 (292)
T ss_dssp --------------------------------EEESCSEE-EEETTSCEECCEEE--SS-GGGGSSEEEEEGGGCCCCSS
T ss_pred --------------------------------ccccCCeE-EEcCCCcEEEeeeC--CC-CCcceeEEEEecCCCccccC
Confidence 11111122 57899999999999 55 54 77999997 6777666
Q ss_pred CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCC
Q psy2145 551 SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEP 629 (808)
Q Consensus 551 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~ 629 (808)
.++.....+ .|.|.++..+|+|.|+|.|.|..|.... .+.|.|.....
T Consensus 136 ~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~---------------------------- 184 (292)
T 4dkd_C 136 TNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP---------------------------- 184 (292)
T ss_dssp CCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC----------------------------
T ss_pred CcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC----------------------------
Confidence 666554443 3999999999999999999999886644 67888875211
Q ss_pred ccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEE--eCCEEEEEEccCCCCCc
Q psy2145 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHVQH--DFGYVTLDITKCVPADS 706 (808)
Q Consensus 630 ~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~--~~~~~~L~I~~v~~~D~ 706 (808)
.+|.+...+.. ..+.+|+.+.|.|.+ .|.| .+.+.|+++|..+.......+.. .....+|.|.++..+|+
T Consensus 185 ----~~p~i~~~~~~-~~~~~g~~v~l~C~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 257 (292)
T 4dkd_C 185 ----GPPALTLVPAE-LVRIRGEAAQIVCSA--SSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHA 257 (292)
T ss_dssp ----SSCEEEEESSC-BCCCSSSCEEEEEEE--EESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSC
T ss_pred ----CCCeEEccCCc-eeEecCCCEEEEEEe--cCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcC
Confidence 13666655543 456799999999999 4655 47899999998776544322211 11235899999999999
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
|.|+|.|.|..|..+.++.|.|.++.
T Consensus 258 G~Y~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 258 GNYSCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp EEEEEEEECSSCEEEEEEEECC----
T ss_pred eEEEEEEecCCCCceeEEEEEEeeCC
Confidence 99999999999999999999998774
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=261.73 Aligned_cols=242 Identities=16% Similarity=0.205 Sum_probs=188.9
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCCc-eEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
|.+...|..+ .+.+|+.+.|.|.+.+ .|.+ .|.|+|+|..+.... .+|.|.+++.+|+|.|+|.|.
T Consensus 2 P~i~~~p~~~-~v~~G~~v~l~C~~~~--~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~ 68 (262)
T 3rjd_A 2 AVITLQPPWV-SVFQEETVTLHCEVLH--LPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRG 68 (262)
T ss_dssp CEEEESSCCS-EEETTCCEEEEEECSS--CCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEES
T ss_pred CeEecCCCcE-EeeCCCeEEEEEECCC--CCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEe
Confidence 3456678887 8999999999999984 5655 999999999886431 269999999999999999998
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
|..+.. .+.|.|.. +| +...+....+.+|+.+.|.|.+.
T Consensus 69 ~~~~s~--~~~l~v~~--------------------------------------~~-~~~~~~~~~~~~g~~v~l~C~~~ 107 (262)
T 3rjd_A 69 LSGRSD--PIQLEIHR--------------------------------------GW-LLLQVSSRVFTEGEPLALRCHAW 107 (262)
T ss_dssp SSCCCC--CEEEEEEC--------------------------------------SS-EEEEESCSEEETTSCEEEEEEEG
T ss_pred cCCccc--cEEEEEec--------------------------------------cc-eEecCCCeEEecCCeEEEEEEcc
Confidence 866543 45555542 22 33445566788999999999995
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCccccccccc
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHG 288 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~ 288 (808)
.+.|.+.+.|+++|..+.... .. ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|....
T Consensus 108 -~~~p~~~v~W~~~g~~~~~~~------~~--~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~--------- 169 (262)
T 3rjd_A 108 -KDKLVYNVLYYRNGKAFKFFH------WN--SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF--------- 169 (262)
T ss_dssp -GGCCCEEEEEEETTEEEEEEE------EC--CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS---------
T ss_pred -CCCCCceEEEEECCccccccC------CC--CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC---------
Confidence 367889999999999875321 11 279999999999999999999999888888888887521
Q ss_pred chhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc-c----EEEEEECCEeccCCCc
Q psy2145 289 ESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-L----KVTWLRNGVPIQASNR 363 (808)
Q Consensus 289 ~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~----~v~W~~~g~~l~~~~~ 363 (808)
.+|.+...+ ...+.+|+.+.|.|.+ .+.|. + .+.|+++|..+...
T Consensus 170 -------------------------~~p~~~~~~-~~~~~~g~~~~l~C~~--~~~p~~p~~~~~~~w~~~~~~~~~~-- 219 (262)
T 3rjd_A 170 -------------------------PAPVLNASV-TSPLLEGNLVTLSCET--KLLLQRPGLQLYFSFYMGSKTLRGR-- 219 (262)
T ss_dssp -------------------------CCCEEEESS-CSSEETTCCEEEEEEC--CCCCC-----EEEEEEETTEEEEEE--
T ss_pred -------------------------CCCeEeecC-ceeecCCCeEEEEeEc--ccCCCCCCccEEEEEEeCCcEeccc--
Confidence 245555444 5568899999999998 67664 3 47899999877531
Q ss_pred EEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2145 364 VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA 399 (808)
Q Consensus 364 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 399 (808)
.....|.|.++..+|+|.|+|.|.|..|..
T Consensus 220 ------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 220 ------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp ------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred ------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 122379999999999999999999999975
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=265.46 Aligned_cols=265 Identities=20% Similarity=0.293 Sum_probs=204.3
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCC-CcEEEEe-eCcEEEEEEccCCCCCCeEEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS-NRVSTMH-DFGYVALNFKYTYPEDSGTYTCR 391 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~ 391 (808)
.+|.|...+....+.+|+.+.|.|.+ .|.|.+.|.|+++|..+... .++.+.. +++..+|.|.++..+|+|.|+|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 80 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEE--ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEE--eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence 47899888889999999999999999 78999999999999998764 3555443 45677899999999999999999
Q ss_pred EEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEec
Q psy2145 392 AVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITD 471 (808)
Q Consensus 392 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 471 (808)
|.|..|....++.|.|..++.+..
T Consensus 81 a~n~~g~~~~~~~l~V~~~p~~~~-------------------------------------------------------- 104 (305)
T 2nzi_A 81 ATNQGGSVSGTASLEVEVPAKIHL-------------------------------------------------------- 104 (305)
T ss_dssp EEETTEEEEEEEEEEECEEEEECC--------------------------------------------------------
T ss_pred EEcCCCCccceEEEEEecCCccCC--------------------------------------------------------
Confidence 999999988888998876543221
Q ss_pred ccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC
Q psy2145 472 TQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS 551 (808)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~ 551 (808)
|.+...+... .+.+|+.+.|.|.+ .|.|.+.+.|+++|..+..+.
T Consensus 105 --------------------------------~~~~~~~~~~-~~~~g~~~~l~C~~--~g~p~p~i~W~~~~~~~~~~~ 149 (305)
T 2nzi_A 105 --------------------------------PKTLEGMGAV-HALRGEVVSIKIPF--SGKPDPVITWQKGQDLIDNNG 149 (305)
T ss_dssp --------------------------------CHHHHSSCCE-EEETTCCEEEEEEE--EEESCCEEEEEESSSBCCSSS
T ss_pred --------------------------------CccccccccE-EecCCCEEEEEEEE--CCCCCCEEEEEECCEECCCCC
Confidence 1111111122 47789999999999 799999999999999998888
Q ss_pred CeEEEeeCcEEEEEECC-CCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCc
Q psy2145 552 RITTKHDFGYVAMDLSH-VRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPE 630 (808)
Q Consensus 552 ~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~ 630 (808)
++.+........|.|.+ +..+|+|.|+|.|.|..|....++.|.|...|..
T Consensus 150 ~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~---------------------------- 201 (305)
T 2nzi_A 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP---------------------------- 201 (305)
T ss_dssp SCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCC----------------------------
T ss_pred cEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCC----------------------------
Confidence 88877766677899999 9999999999999999999999999999876531
Q ss_pred cccCCCeEEeecCCCccccCCceEEEE--------------EEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEE
Q psy2145 631 RQYEKPIFTQLLTGTSEIMEGQSAHYD--------------CRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTL 696 (808)
Q Consensus 631 ~~~~~P~~~~~~~~~~~v~~G~~v~l~--------------C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L 696 (808)
|..... ....+..+.|. |.+ .+.|.+...|++.+... ...|
T Consensus 202 -----p~~~~~-----~~~~~~~v~l~w~~p~~~g~~~i~~y~v--~~~~~~~~~w~~~~~~~-------------~~~~ 256 (305)
T 2nzi_A 202 -----PRGVKV-----SDVSRDSVNLTWTEPASDGGSKITNYIV--EKCATTAERWLRVGQAR-------------ETRY 256 (305)
T ss_dssp -----CEEEEE-----ESCCSSCEEEEEECCSCCSBSCEEEEEE--EEEETTSCCEEEEEEES-------------SSEE
T ss_pred -----CCCcee-----eeccCCEEEEEEcCCccCCCCceeEEEE--EEecCCCCccEECcccc-------------CceE
Confidence 222111 11123444444 444 33444444555543322 2379
Q ss_pred EEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 697 DITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 697 ~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
.|.++...|.|.|+|.|.|.+|....+.
T Consensus 257 ~i~~l~~~~~y~~~~~A~N~~G~~~~S~ 284 (305)
T 2nzi_A 257 TVINLFGKTSYQFRVIAENKFGLSKPSE 284 (305)
T ss_dssp EECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred EecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence 9999999999999999999999876554
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=268.43 Aligned_cols=270 Identities=19% Similarity=0.215 Sum_probs=205.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEeec-----cCcEEEEeeCCeEEEEEcccCcCCCeeEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVTI-----GHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~~-----~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C 125 (808)
+..|.+. .+.+|+.++|.|.+. +.|.+.|.|+|+ |..|.. +.|+.+..+.+..+|.|.+++.+|+|.|+|
T Consensus 4 i~~~~~~-~~~~G~~v~l~C~~~--g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 80 (389)
T 2jll_A 4 IIQLKNE-TTYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 80 (389)
T ss_dssp EEECCCE-EEETTSEEEEEEEEE--CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEE
T ss_pred EEecCce-EEeCCCeEEEEEEee--cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEE
Confidence 3346666 788899999999999 578899999999 998875 567887777777899999999999999999
Q ss_pred EEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEE
Q psy2145 126 RAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205 (808)
Q Consensus 126 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C 205 (808)
.|.|..|....++.|.|.. +|.|...+....+.+|+.+.|.|
T Consensus 81 ~a~n~~g~~~~~~~l~V~~--------------------------------------~P~~~~~~~~~~~~~g~~~~l~C 122 (389)
T 2jll_A 81 EAASRIGGHQKSMYLDIEY--------------------------------------APKFISNQTIYYSWEGNPINISC 122 (389)
T ss_dssp EEECSSCEEEEEEEEEEEE--------------------------------------EEEECCSCCEEEECTTCCEEEEE
T ss_pred EEEeCCCCcceEEEEEEEe--------------------------------------CCEEecCcceEEeccCCEEEEEE
Confidence 9999999998888998853 45555555556788999999999
Q ss_pred EEeecCCCCeEEEEeeCCEEccCCC--ceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccc
Q psy2145 206 RLIPVSDNTMKVEWFHNNVPIKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283 (808)
Q Consensus 206 ~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~ 283 (808)
.+ .+.|.+.|.|+|+|..+.... ++.+..+++..+|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 123 ~~--~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P---- 196 (389)
T 2jll_A 123 DV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP---- 196 (389)
T ss_dssp CE--EEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC----
T ss_pred EE--EecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC----
Confidence 99 577889999999999997654 6666666666789999999999999999999999998888888775432
Q ss_pred cccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEe--ecCCCc--cEEEEEECCEecc
Q psy2145 284 ETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI--PVGDSK--LKVTWLRNGVPIQ 359 (808)
Q Consensus 284 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~--~~g~p~--~~v~W~~~g~~l~ 359 (808)
.+|... ......+..+.|.|... ..|.|. ..+.|.+++...
T Consensus 197 ------------------------------~~P~~~----~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~- 241 (389)
T 2jll_A 197 ------------------------------SSPYGV----KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI- 241 (389)
T ss_dssp ------------------------------CCCEEE----EEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSC-
T ss_pred ------------------------------CCCcce----EEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcc-
Confidence 123111 01123457788988741 122342 367888876421
Q ss_pred CCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2145 360 ASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407 (808)
Q Consensus 360 ~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 407 (808)
............|.|.++.+.|.|.|+|.|.|..|....+..+.+
T Consensus 242 ---~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~ 286 (389)
T 2jll_A 242 ---WKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF 286 (389)
T ss_dssp ---CEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred ---cEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEE
Confidence 112222223347999999999999999999999997654433333
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=275.05 Aligned_cols=278 Identities=15% Similarity=0.188 Sum_probs=196.6
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCC----CCeEEEEeeCC--EE-------------c--cCCCceEEE-ecCce
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSD----NTMKVEWFHNN--VP-------------I--KSGSRFTET-NNFGF 240 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~----p~~~v~W~~~g--~~-------------l--~~~~~~~~~-~~~~~ 240 (808)
++.+...+.++.+.+|++++|.|.+. +. +.+.|.|+|++ .. + ....++.+. ...+.
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 91 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFA--NPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCS--SCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSB
T ss_pred CcceEEcCCcEEEEecCCEEEeeecC--CCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCC
Confidence 44556667778999999999999984 44 56689999954 11 1 123444443 12233
Q ss_pred EEEEEccCCCCCcEEEEEE-EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec
Q psy2145 241 VALDIMQCLPEDSGVYTCR-AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT 319 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~-a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~ 319 (808)
.+|.|.+++.+|+|.|+|. +.|..|.....+.|.|..+|.+ .+.
T Consensus 92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~-----------------------------------~~~ 136 (331)
T 3u83_A 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN-----------------------------------WIE 136 (331)
T ss_dssp CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-----------------------------------EEE
T ss_pred ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc-----------------------------------eee
Confidence 4799999999999999998 5667788888889988764321 112
Q ss_pred cCCCceEeecC---CeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCc----EEEEEEccCCCCCCeEEEEEE
Q psy2145 320 QPMRDIHVAEN---QAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG----YVALNFKYTYPEDSGTYTCRA 392 (808)
Q Consensus 320 ~~~~~~~v~~G---~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~d~G~Y~C~a 392 (808)
.......+.+| +.+.|.|.+. .+.|.+.+.|++++...... .......+ ...|.|..+..+|+|.|+|.|
T Consensus 137 ~~~~~~~~~~g~~~~~~~l~C~~~-~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 213 (331)
T 3u83_A 137 GTQAVLRAKKGQDDKVLVATCTSA-NGKPPSVVSWETRLKGEAEY--QEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213 (331)
T ss_dssp ECSSCEEECTTCCCCEEEEEEEEE-EEBSCCEEEEEESSCCEEEE--EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEE
T ss_pred cCCCceeecCCCccceEEEEEEec-CCcCCceEEEEcCCCCcccc--ceeECCCCcEEEEEEEEEEeccccCCCEEEEEE
Confidence 23445677788 8899999832 78899999999953221110 00111111 136899999999999999999
Q ss_pred EcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecc
Q psy2145 393 VNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDT 472 (808)
Q Consensus 393 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 472 (808)
.|..|....++.|.|..+|.+.
T Consensus 214 ~n~~~~~~~~~~l~V~~~P~~~---------------------------------------------------------- 235 (331)
T 3u83_A 214 NYHMDRFKESLTLNVQYEPEVT---------------------------------------------------------- 235 (331)
T ss_dssp EETTEEEEEEEECCEEEEEEEE----------------------------------------------------------
T ss_pred ecCCCcceeeEEEEEecCCeEE----------------------------------------------------------
Confidence 9999988888888887654221
Q ss_pred cCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCC
Q psy2145 473 QHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSS 551 (808)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~ 551 (808)
..+... ..+.+|+.+.|.|.+ .|.|.+. |.|+|+|..+....
T Consensus 236 ----------------------------------~~~~~~-~~~~~g~~~~l~C~~--~g~p~p~~i~W~~~~~~~~~~~ 278 (331)
T 3u83_A 236 ----------------------------------IEGFDG-NWYLQRMDVKLTCKA--DANPPATEYHWTTLNGSLPKGV 278 (331)
T ss_dssp ----------------------------------EECCCS-CCBTTCCCEEEEEEE--EEESCCCEEEEEETTBSCCTTE
T ss_pred ----------------------------------EecCCC-ceEeCCCeEEEEEeC--cCCCCCCEEEEEECCCcccccc
Confidence 011111 147889999999999 7899998 99999999886542
Q ss_pred CeEEEeeCcEEEEEEC-CCCCCCCEEEEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 552 RITTKHDFGYVAMDLS-HVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 552 ~~~~~~~~~~~~L~I~-~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
.. .++ +|.|. ++..+|+|.|+|.|.|..|..+.++.|.|...+.
T Consensus 279 --~~--~~~--~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 279 --EA--QNR--TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp --EE--ETT--EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC---
T ss_pred --ee--cCc--EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccch
Confidence 22 233 79999 9999999999999999999999999999987543
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=270.50 Aligned_cols=269 Identities=17% Similarity=0.216 Sum_probs=180.1
Q ss_pred eeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCc-EEEEEEccCCCCCCeEEEEEEEcC
Q psy2145 317 VFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG-YVALNFKYTYPEDSGTYTCRAVNE 395 (808)
Q Consensus 317 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~~~L~I~~v~~~d~G~Y~C~a~n~ 395 (808)
.|........+.+|+.+.|.|.+ .+. |+|+++|..+. .+.....++. ..+|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~i~~~~~~~~v~~G~~v~L~C~~--~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 73 (289)
T 3mjg_X 2 VVTPPGPELVLNVSSTFVLTCSG--SAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73 (289)
T ss_dssp CBCSSCSEEECCTTCCEEEEEEE--SSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-
T ss_pred eecCCCCeEEEeCCCcEEEEEec--cce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEccc
Confidence 34444456778999999999998 554 99999998873 2333333332 368999999999999999999998
Q ss_pred CcceE-EEEEEEEEec-ccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEeccc
Q psy2145 396 LGEAV-TSSTLFVESK-ASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473 (808)
Q Consensus 396 ~g~~~-~~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (808)
.|... .+..+.|... +...
T Consensus 74 ~g~~~~~~~~~~v~v~~p~~~----------------------------------------------------------- 94 (289)
T 3mjg_X 74 RGLETDERKRLYIFVPDPTVG----------------------------------------------------------- 94 (289)
T ss_dssp -----CCCEEEEEECCCTTCC-----------------------------------------------------------
T ss_pred CCCCcCcEEeEEEEEECCCcC-----------------------------------------------------------
Confidence 87622 2233444322 1000
Q ss_pred CCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCC--cccccCCCceEEEEEEeeCCCCCcEEEEEECC--EecCC
Q psy2145 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQN--IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPLED 549 (808)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~--~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l~~ 549 (808)
|...... ...+.+|+.+.|.|.+ . .|.+.++|++++ ..+.
T Consensus 95 --------------------------------~~~~~~~~~~~~v~~G~~v~l~C~~--~-~p~~~v~w~~~~~~~~~~- 138 (289)
T 3mjg_X 95 --------------------------------FLPNDAEELFIFLTEITEITIPCRV--T-DPQLVVTLHEKKGDVALP- 138 (289)
T ss_dssp --------------------------------BCCCCHHHHEEEESSCCCEEECCCB--S-CTTSCEEEEESSCCSCCC-
T ss_pred --------------------------------cccCCCCcceEEeecCCeEEEEeEc--C-CCCceEEEEeCCCCCccc-
Confidence 0000000 0147899999999998 5 677889998865 3332
Q ss_pred CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCC
Q psy2145 550 SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQE 628 (808)
Q Consensus 550 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~ 628 (808)
..+ ....+ +. ..+|+|.|+|.|.|..|...+. ..|.|...
T Consensus 139 -~~~--~~~~~---~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~----------------------------- 179 (289)
T 3mjg_X 139 -VPY--DHQRG---FS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV----------------------------- 179 (289)
T ss_dssp -CCE--ETTTE---EE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-----------------------------
T ss_pred -eee--cCCcC---ee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-----------------------------
Confidence 111 11111 11 3579999999999987765543 45555431
Q ss_pred CccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-----eCCEEEEEEccCCC
Q psy2145 629 PERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-----DFGYVTLDITKCVP 703 (808)
Q Consensus 629 ~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-----~~~~~~L~I~~v~~ 703 (808)
.+|.+...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+++|+.+.......... .....+|.|.++..
T Consensus 180 -----~~p~i~~~~~~-~~v~~G~~v~L~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 251 (289)
T 3mjg_X 180 -----SSINVSVNAVQ-TVVRQGENITLMCIV--IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL 251 (289)
T ss_dssp -----CCCCCEEEESC-SEEETTSCEEEEEEE--ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCS
T ss_pred -----CCCCcEEeCCc-ceeEcCCCEEEEEEE--CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccCh
Confidence 12555544443 568899999999999 799999999999887654322211111 12346899999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEeCCCcc
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~ 735 (808)
+|+|.|+|.|.|.+|....++.|.|.+++.+-
T Consensus 252 ~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 252 EDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp SCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred hhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 99999999999999999999999999887654
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=263.17 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=184.3
Q ss_pred CCeeccCCCceEeecCCeEEEEEEEeecC-CCcc--EEEEEECCEeccCCCcEEEEeeCcEEEEEEcc---CCCCCCeE-
Q psy2145 315 APVFTQPMRDIHVAENQAAHFEARLIPVG-DSKL--KVTWLRNGVPIQASNRVSTMHDFGYVALNFKY---TYPEDSGT- 387 (808)
Q Consensus 315 ~p~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~---v~~~d~G~- 387 (808)
+|.+..+ ..+.+|+.+.|.|.+ .| .|.+ .|+|+|+|..+.. .+..+++ .|.+.. +..+|+|.
T Consensus 6 ~p~~~~~---~~v~~G~~v~l~C~~--~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g 74 (265)
T 2oz4_A 6 PPQLVSP---RVLEVDTQGTVVCSL--DGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQ 74 (265)
T ss_dssp CCEEECC---SEEETTEEEEEEEEE--ESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEE
T ss_pred CCccccC---ceEecCCCEEEEEEc--cCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcc
Confidence 5555443 367899999999999 56 7766 9999999998865 2333333 344443 37788885
Q ss_pred -EEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCc
Q psy2145 388 -YTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEG 466 (808)
Q Consensus 388 -Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 466 (808)
|+|.|.|..|....++.|.|...+.
T Consensus 75 ~Y~C~a~n~~~~~~~~~~l~V~~~p~------------------------------------------------------ 100 (265)
T 2oz4_A 75 RLTCAVILGNQSQETLQTVTIYSFPA------------------------------------------------------ 100 (265)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCCC------------------------------------------------------
T ss_pred eEEEEEecCCCCcEEEEEEEEeCCCC------------------------------------------------------
Confidence 9999999999988888888875321
Q ss_pred eeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEe
Q psy2145 467 TIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP 546 (808)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~ 546 (808)
|.+.. .+. .+.+|+.+.|.|.+ . |.+.|+| ||..
T Consensus 101 -------------------------------------p~~~~--~~~-~v~~G~~v~l~C~~--~--p~~~i~W--~g~~ 134 (265)
T 2oz4_A 101 -------------------------------------PNVIL--TKP-EVSEGTEVTVKCEA--H--PRAKVTL--NGVP 134 (265)
T ss_dssp -------------------------------------CEEEE--SCS-EEETTCEEEEEEEC--C--TTSEEEE--SSCS
T ss_pred -------------------------------------ceeec--CCc-eecCCCcEEEEEEc--c--CCCEEEE--CCEE
Confidence 11221 111 47789999999998 4 8999999 8888
Q ss_pred cCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC-eeEE---EEEEEEEEecccccccccCcccccccccccCCC
Q psy2145 547 LEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL-GEAV---TTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622 (808)
Q Consensus 547 l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~-G~~~---~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~ 622 (808)
+.... ....|.|..+..+|+|.|+|.|.|.. |... .++.|.|...|.+....
T Consensus 135 ~~~~~--------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~---------------- 190 (265)
T 2oz4_A 135 AQPLG--------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD---------------- 190 (265)
T ss_dssp SSCCS--------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGG----------------
T ss_pred ccCCC--------CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcccccc----------------
Confidence 84322 23368899999999999999998644 7665 67888888765432110
Q ss_pred CCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCC
Q psy2145 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCV 702 (808)
Q Consensus 623 ~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~ 702 (808)
......+.+|+.+.|.|.+ .|+|.|.|.|+|+|..+..... | ..+.
T Consensus 191 -------------------~p~~~~v~~g~~~~l~C~~--~g~P~p~i~W~~~~~~~~~~g~-----------~--~~v~ 236 (265)
T 2oz4_A 191 -------------------CPGNWTWPENSQQTPMCQA--WGNPLPELKCLKDGTFPLPIGE-----------S--VTVT 236 (265)
T ss_dssp -------------------SCSEEEEETTCEECCCCCC--EEESCCEEEEEETTTEECCTTS-----------C--EECC
T ss_pred -------------------CCCccEEcCCCeEEEEeEC--ccCCCCeEEEEECCcccCCCCc-----------E--EEee
Confidence 0112357889999999998 7999999999999984332221 2 2378
Q ss_pred CCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 703 PADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 703 ~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
.+|+|.|+|.|.|.+|.++.++.|.|..+
T Consensus 237 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p 265 (265)
T 2oz4_A 237 RDLEGTYLCRARSTQGEVTREVTVNVLSP 265 (265)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred hhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence 89999999999999999999999999853
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=270.15 Aligned_cols=274 Identities=19% Similarity=0.242 Sum_probs=201.4
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+..+.+.+|++++|.|.+ .+. |.|++++.. +.....+....+|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~--~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (292)
T 4dkd_C 2 GSIPVIEPSVPELVVKPGATVTLRCVG--NGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTE 70 (292)
T ss_dssp --CCEEESCCSSCEECTTCCEEEEEEC--SSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred CCCceecCCCCeEEEcCCCcEEEEEcC--CCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEE
Confidence 358999999999999999999999998 342 999976542 334444455568999999999999999999
Q ss_pred EeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEe
Q psy2145 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI 340 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~ 340 (808)
.|..|....++.|.|..++ ..+...+....+.+|+.+.|.|.+
T Consensus 71 ~n~~~~~~~~~~l~V~~~~------------------------------------~~~~~~~~~~~v~~g~~v~l~C~~- 113 (292)
T 4dkd_C 71 PGDPLGGSAAIHLYVKDPA------------------------------------RPWNVLAQEVVVFEDQDALLPCLL- 113 (292)
T ss_dssp CC----CCEEECCEECCSS------------------------------------CCEEESCSEEEEETTSCEECCEEE-
T ss_pred ccCCCCcceEEEEEEcCcc------------------------------------ccccccCCeEEEcCCCcEEEeeeC-
Confidence 9988888888888886532 123444556788999999999998
Q ss_pred ecCCCc--cEEEEEEC-CEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEEeccccccc
Q psy2145 341 PVGDSK--LKVTWLRN-GVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVESKASLQLD 416 (808)
Q Consensus 341 ~~g~p~--~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~ 416 (808)
.+ |. +.|.|+++ |..+....++....+++ |.|.++..+|+|.|+|.|.|..|...+ .+.|.|.....
T Consensus 114 -~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~---- 184 (292)
T 4dkd_C 114 -TD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP---- 184 (292)
T ss_dssp -SS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSC---CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCC----
T ss_pred -CC-CCcceeEEEEecCCCccccCCcccccCCce---EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCC----
Confidence 55 44 78999997 67776666665544443 999999999999999999998776644 57777764210
Q ss_pred ccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcC
Q psy2145 417 TQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVD 496 (808)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (808)
T Consensus 185 -------------------------------------------------------------------------------- 184 (292)
T 4dkd_C 185 -------------------------------------------------------------------------------- 184 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEECCEecCCCCCeEEEee--CcEEEEEECCCCCCC
Q psy2145 497 DNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLEDSSRITTKHD--FGYVAMDLSHVRAED 573 (808)
Q Consensus 497 ~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g~~l~~~~~~~~~~~--~~~~~L~I~~v~~~D 573 (808)
.+|.|...+... .+.+|+.+.|.|.+ .+.| .+.+.|++++..+........... .....|.|.+++.+|
T Consensus 185 -----~~p~i~~~~~~~-~~~~g~~v~l~C~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 256 (292)
T 4dkd_C 185 -----GPPALTLVPAEL-VRIRGEAAQIVCSA--SSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQH 256 (292)
T ss_dssp -----SSCEEEEESSCB-CCCSSSCEEEEEEE--EESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTS
T ss_pred -----CCCeEEccCCce-eEecCCCEEEEEEe--cCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhc
Confidence 134444444433 46799999999999 4544 567999999987764433222111 122479999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEec
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~ 599 (808)
+|.|+|.|.|..|..+.++.|.|...
T Consensus 257 ~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 257 AGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp CEEEEEEEECSSCEEEEEEEECC---
T ss_pred CeEEEEEEecCCCCceeEEEEEEeeC
Confidence 99999999999999999999999875
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=274.08 Aligned_cols=274 Identities=17% Similarity=0.252 Sum_probs=180.2
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCC-CCeEEEEeeCCEEcc---------CCCceEEEec-----CceEEEEEccC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSD-NTMKVEWFHNNVPIK---------SGSRFTETNN-----FGFVALDIMQC 248 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~~~g~~l~---------~~~~~~~~~~-----~~~~~L~I~~~ 248 (808)
..|...+.++.+.+|++++|.|.+ .+. |.+.|.|+|+|.++. ...++....+ .+..+|.|.++
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~--~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v 81 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTV--TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI 81 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEE--SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred eEEEcCCCceEEecCCcEEEEEEc--cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence 456777888999999999999999 455 778999999886432 1124433221 33447999999
Q ss_pred CCCCcEEEEEEEEeCceeE-----EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC
Q psy2145 249 LPEDSGVYTCRAVNALGQA-----VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR 323 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~ 323 (808)
+.+|+|.|+|.|.|..|.. ...+.|.|...+ .+|.+..+
T Consensus 82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p----------------------------------~~p~i~~~-- 125 (327)
T 2wng_A 82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP----------------------------------SAPVVSGP-- 125 (327)
T ss_dssp CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC----------------------------------CCCEEECC--
T ss_pred ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecC----------------------------------CCceeecc--
Confidence 9999999999999976531 234677776533 24444422
Q ss_pred ceEeecCCeEEEEEEEeecCCCcc--EEEEEECCEeccCCCcEEEEe-eCc----EEEEEEccCCCCCCeEEEEEEEcCC
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKL--KVTWLRNGVPIQASNRVSTMH-DFG----YVALNFKYTYPEDSGTYTCRAVNEL 396 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~I~~v~~~d~G~Y~C~a~n~~ 396 (808)
...+.+|+.+.|.|.+ .|.|.+ .|+|++||.++.......... +++ ...|.|.....+|.|.|+|.|.|..
T Consensus 126 ~~~~~~g~~~~l~C~~--~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~ 203 (327)
T 2wng_A 126 AARATPQHTVSFTCES--HGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVT 203 (327)
T ss_dssp SSCBCTTCEEEEEEEE--EEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTT
T ss_pred ccccCCCCEEEEEEEE--eCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccc
Confidence 3567899999999999 565554 999999999987654222211 111 1257888777778899999999988
Q ss_pred cce---EEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEeccc
Q psy2145 397 GEA---VTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQ 473 (808)
Q Consensus 397 g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 473 (808)
|.. ..++.+.+.
T Consensus 204 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 218 (327)
T 2wng_A 204 LQGDPLRGTANLSET----------------------------------------------------------------- 218 (327)
T ss_dssp SCSCCEEEEEEGGGT-----------------------------------------------------------------
T ss_pred cCCCcccceEEeccc-----------------------------------------------------------------
Confidence 763 222222110
Q ss_pred CCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCC-CCc-EEEEEECCEecCCCC
Q psy2145 474 HPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD-PTL-KVEWFRNEKPLEDSS 551 (808)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~~-~v~W~k~g~~l~~~~ 551 (808)
...+|.+...... +.+|+.+.|.|.+ .|. |++ .|.|+|||+.+....
T Consensus 219 --------------------------v~~~P~i~~~~~~---~~~G~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~ 267 (327)
T 2wng_A 219 --------------------------IRVPPTLEVTQQP---VRAENQVNVTCQV--RKFYPQRLQLTWLENGNVSRTET 267 (327)
T ss_dssp --------------------------BCBCCEEEEEEEC---CSSTTCCEEEEEE--EEEBSSCEEEEEEETTEEEEEEE
T ss_pred --------------------------cCCCCEEEEecCC---cCCCCcEEEEEEE--ccccCCCcEEEEEECCeEccCcc
Confidence 0113444333222 6789999999999 564 444 899999999886432
Q ss_pred --CeEEEeeCcE---EEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 552 --RITTKHDFGY---VAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 552 --~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
++....++.+ ..|.|.++..+|+|.|+|.|.|..|...+...
T Consensus 268 ~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~ 314 (327)
T 2wng_A 268 ASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSH 314 (327)
T ss_dssp CCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEE
T ss_pred cCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhhe
Confidence 1222222211 36999999999999999999999987654433
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=259.62 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=212.0
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC-CceEEE-ecCceEEEEEccCCCCCcEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-SRFTET-NNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~-~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
.+|.|...+.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+... .++... ..++..+|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 80 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEE--ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEE--eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence 58999999999999999999999999 58888999999999998754 355543 356677999999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
|.|..|....++.|.|..++.+ ..|.+...+....+.+|+.+.|.|.+
T Consensus 81 a~n~~g~~~~~~~l~V~~~p~~--------------------------------~~~~~~~~~~~~~~~~g~~~~l~C~~ 128 (305)
T 2nzi_A 81 ATNQGGSVSGTASLEVEVPAKI--------------------------------HLPKTLEGMGAVHALRGEVVSIKIPF 128 (305)
T ss_dssp EEETTEEEEEEEEEEECEEEEE--------------------------------CCCHHHHSSCCEEEETTCCEEEEEEE
T ss_pred EEcCCCCccceEEEEEecCCcc--------------------------------CCCccccccccEEecCCCEEEEEEEE
Confidence 9999999888899998764322 12333333456778899999999999
Q ss_pred eecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEcc-CCCCCCeEEEEEEEcCCcceEEEEEEEEEeccccccccc
Q psy2145 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKY-TYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQ 418 (808)
Q Consensus 340 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~ 418 (808)
.|.|.+.+.|+++|..+..+.++.+.......+|.|.+ +..+|+|.|+|.|.|..|....++.|.|...|..+....
T Consensus 129 --~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~ 206 (305)
T 2nzi_A 129 --SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK 206 (305)
T ss_dssp --EEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEE
T ss_pred --CCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCce
Confidence 78899999999999999888888777666777899999 999999999999999999999999999987653221000
Q ss_pred chHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCC
Q psy2145 419 NEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDN 498 (808)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (808)
+.......+.+.+..
T Consensus 207 ------------------------~~~~~~~~v~l~w~~----------------------------------------- 221 (305)
T 2nzi_A 207 ------------------------VSDVSRDSVNLTWTE----------------------------------------- 221 (305)
T ss_dssp ------------------------EESCCSSCEEEEEEC-----------------------------------------
T ss_pred ------------------------eeeccCCEEEEEEcC-----------------------------------------
Confidence 000000000000000
Q ss_pred CccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 499 ~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
....|....+.|.+ ...|.+...|++.+... .. .|.|.++...|.|.|+
T Consensus 222 ----------------p~~~g~~~i~~y~v--~~~~~~~~~w~~~~~~~-----------~~--~~~i~~l~~~~~y~~~ 270 (305)
T 2nzi_A 222 ----------------PASDGGSKITNYIV--EKCATTAERWLRVGQAR-----------ET--RYTVINLFGKTSYQFR 270 (305)
T ss_dssp ----------------CSCCSBSCEEEEEE--EEEETTSCCEEEEEEES-----------SS--EEEECSCCSSCEEEEE
T ss_pred ----------------CccCCCCceeEEEE--EEecCCCCccEECcccc-----------Cc--eEEecCCCCCCeEEEE
Confidence 01235556677777 55666677887765543 11 6999999999999999
Q ss_pred EEEEeCCeeEEEE
Q psy2145 579 CKATNALGEAVTT 591 (808)
Q Consensus 579 C~a~N~~G~~~~s 591 (808)
|.|.|..|....+
T Consensus 271 ~~A~N~~G~~~~S 283 (305)
T 2nzi_A 271 VIAENKFGLSKPS 283 (305)
T ss_dssp EEEEETTEECCCC
T ss_pred EEEEeCCcccCCc
Confidence 9999999976544
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=273.31 Aligned_cols=276 Identities=11% Similarity=0.100 Sum_probs=181.6
Q ss_pred CCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 314 ~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
.+|.|...+. ..+.+|+.++|.|.+ .+. .+.+.|+|+|..+..... .....+ .|.|.++..+|+|.|+|.|.
T Consensus 23 ~~P~i~~~p~-~~v~~G~~v~L~C~~--~~~-~~~~~W~k~g~~~~~~~~--~~~~~~--~L~I~~v~~~D~G~Y~C~a~ 94 (316)
T 3vh8_G 23 DKPFLSAWPS-AVVPRGGHVTLRCHY--RHR-FNNFMLYKEDRIHIPIFH--GRIFQE--SFNMSPVTTAHAGNYTCRGS 94 (316)
T ss_dssp -CCEEEEESC-SEEETTSCEEEEEEB--TTB-CCSEEEEESSCSSSCHHH--HCCBSS--CEEECSCCGGGCEEEEEEEB
T ss_pred CCCEeeccCC-CccCCCCCEEEEEEc--cCC-CceEEEEeCCCccceeec--CCcceE--EEEECCCCcccCeEEEEEEE
Confidence 4777776665 568899999999998 565 688999999987643210 011122 69999999999999999998
Q ss_pred cCCc-----ceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCcee
Q psy2145 394 NELG-----EAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTI 468 (808)
Q Consensus 394 n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 468 (808)
|..+ .....+.|.|...+
T Consensus 95 ~~~~~~~~~~~s~~~~l~V~~~~--------------------------------------------------------- 117 (316)
T 3vh8_G 95 HPHSPTGWSAPSNPVVIMVTGNH--------------------------------------------------------- 117 (316)
T ss_dssp CSSSSSSBCCCCCCEEEEEECSS---------------------------------------------------------
T ss_pred cCCCCcceecCCCcEEEEEecCC---------------------------------------------------------
Confidence 7432 22334556665321
Q ss_pred EecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecC
Q psy2145 469 ITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE 548 (808)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~ 548 (808)
.+|.+...... .+.+|++++|.|.+ . .+.+.+.|+|+|..+.
T Consensus 118 ---------------------------------~~p~~~~~~~~--~v~~G~~v~L~C~~--~-~~~~~~~w~k~g~~~~ 159 (316)
T 3vh8_G 118 ---------------------------------RKPSLLAHPGP--LVKSGERVILQCWS--D-IMFEHFFLHKEGISKD 159 (316)
T ss_dssp ---------------------------------CCCEEEEESCS--EEETTCCEEEEEEE--S-SCCSEEEEEETTCCSC
T ss_pred ---------------------------------CCCeEEecCCC--ccCCCCeEEEEEcC--C-CCCcEEEEEECCCccc
Confidence 12333332222 37899999999998 3 4567899999998775
Q ss_pred CCCCeEE-EeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE-----EEEEEEEEEecccccccccCcccccccccccCCC
Q psy2145 549 DSSRITT-KHDFGYVAMDLSHVRAEDEGIYICKATNALGEA-----VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPA 622 (808)
Q Consensus 549 ~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-----~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~ 622 (808)
....... ........|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...+
T Consensus 160 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~---------------------- 217 (316)
T 3vh8_G 160 PSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY---------------------- 217 (316)
T ss_dssp CEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS----------------------
T ss_pred cceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC----------------------
Confidence 4321111 111123479999999999999999999998742 444666665421
Q ss_pred CCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-CEEEEEEccC
Q psy2145 623 SPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-GYVTLDITKC 701 (808)
Q Consensus 623 ~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~~L~I~~v 701 (808)
.+|.+..... ..+.+|+.++|.|.+ . .|.+.+.|+|+|..+...........+ ....|.|.++
T Consensus 218 -----------~~p~i~~~~~--~~v~~G~~v~L~C~~--~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v 281 (316)
T 3vh8_G 218 -----------EKPSLSAQPG--PKVQAGESVTLSCSS--R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA 281 (316)
T ss_dssp -----------CCCEEEEESC--SCCCTTSCCEEEEEE--S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC--
T ss_pred -----------CCCeEEeCCC--CeecCCCcEEEEEEC--C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCc
Confidence 2466655533 267899999999999 4 588999999999877642221111111 2368999999
Q ss_pred CCCCcEEEEEEEEeCCcc-----eEEEEEEEEEeCC
Q psy2145 702 VPADSGVYMCKAINRAGE-----AVSSTSLKVKSKS 732 (808)
Q Consensus 702 ~~~D~G~Y~C~A~N~~G~-----~~~s~~l~V~~~p 732 (808)
. |+|.|+|.|.|..|. .+..+.|.|.++|
T Consensus 282 ~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 282 T--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp -----CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred C--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 9 999999999998774 4556778887765
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=261.93 Aligned_cols=266 Identities=15% Similarity=0.211 Sum_probs=179.0
Q ss_pred eEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCc-eEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG-FVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 185 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
.|.....++.+.+|++++|.|.+ .+. |.|+|+|..+. .+.....++. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~i~~~~~~~~v~~G~~v~L~C~~--~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~ 73 (289)
T 3mjg_X 2 VVTPPGPELVLNVSSTFVLTCSG--SAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDS 73 (289)
T ss_dssp CBCSSCSEEECCTTCCEEEEEEE--SSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-
T ss_pred eecCCCCeEEEeCCCcEEEEEec--cce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEccc
Confidence 34445556789999999999999 343 99999999874 2233323322 358999999999999999999998
Q ss_pred cee---EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC--ceEeecCCeEEEEEE
Q psy2145 264 LGQ---AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR--DIHVAENQAAHFEAR 338 (808)
Q Consensus 264 ~g~---~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~G~~~~l~C~ 338 (808)
.|. ...++.|.|..+. .|.+...+. ...+.+|+.+.|.|.
T Consensus 74 ~g~~~~~~~~~~v~v~~p~-----------------------------------~~~~~~~~~~~~~~v~~G~~v~l~C~ 118 (289)
T 3mjg_X 74 RGLETDERKRLYIFVPDPT-----------------------------------VGFLPNDAEELFIFLTEITEITIPCR 118 (289)
T ss_dssp -----CCCEEEEEECCCTT-----------------------------------CCBCCCCHHHHEEEESSCCCEEECCC
T ss_pred CCCCcCcEEeEEEEEECCC-----------------------------------cCcccCCCCcceEEeecCCeEEEEeE
Confidence 876 2234444443211 111111111 156889999999999
Q ss_pred EeecCCCccEEEEEECC--EeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecccccc
Q psy2145 339 LIPVGDSKLKVTWLRNG--VPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVESKASLQL 415 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g--~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~ 415 (808)
+ . .|.+.++|++++ .++.. .+ ....+. + ...|+|.|+|.|.|..+...+. ..|.|...
T Consensus 119 ~--~-~p~~~v~w~~~~~~~~~~~--~~--~~~~~~--~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~----- 179 (289)
T 3mjg_X 119 V--T-DPQLVVTLHEKKGDVALPV--PY--DHQRGF--S-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV----- 179 (289)
T ss_dssp B--S-CTTSCEEEEESSCCSCCCC--CE--ETTTEE--E-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-----
T ss_pred c--C-CCCceEEEEeCCCCCccce--ee--cCCcCe--e-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-----
Confidence 8 4 677889998865 33321 11 111121 1 3579999999999887665443 44555421
Q ss_pred cccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCc
Q psy2145 416 DTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEV 495 (808)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (808)
T Consensus 180 -------------------------------------------------------------------------------- 179 (289)
T 3mjg_X 180 -------------------------------------------------------------------------------- 179 (289)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-----eCcEEEEEECCCC
Q psy2145 496 DDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-----DFGYVAMDLSHVR 570 (808)
Q Consensus 496 ~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~v~ 570 (808)
.+|.+...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+++++.+.......... .....+|.|.++.
T Consensus 180 ------~~p~i~~~~~~~-~v~~G~~v~L~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 250 (289)
T 3mjg_X 180 ------SSINVSVNAVQT-VVRQGENITLMCIV--IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250 (289)
T ss_dssp ------CCCCCEEEESCS-EEETTSCEEEEEEE--ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCC
T ss_pred ------CCCCcEEeCCcc-eeEcCCCEEEEEEE--CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccC
Confidence 123333333332 58899999999999 789999999999887654432222111 1234589999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 571 AEDEGIYICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
.+|+|.|+|.|.|..|....++.|.|...+.
T Consensus 251 ~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 251 LEDSGTYTCNVTESVNDHQDEKAINITVVES 281 (289)
T ss_dssp SSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred hhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence 9999999999999999999999999998654
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=255.22 Aligned_cols=249 Identities=19% Similarity=0.245 Sum_probs=185.1
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecC-CCCe--EEEEeeCCEEccCCCceEEEecCceEEEEEccC---CCCCcE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTM--KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC---LPEDSG 254 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~-~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~---~~~D~G 254 (808)
..+|.+..+ ..+.+|++++|.|.+. + .|.+ .|.|+|+|..+.. .....++ .|.|..+ +.+|+|
T Consensus 4 ~~~p~~~~~---~~v~~G~~v~l~C~~~--g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g 72 (265)
T 2oz4_A 4 ATPPQLVSP---RVLEVDTQGTVVCSLD--GLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEG 72 (265)
T ss_dssp SSCCEEECC---SEEETTEEEEEEEEEE--SCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCE
T ss_pred CCCCccccC---ceEecCCCEEEEEEcc--CCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCC
Confidence 445666543 3688999999999995 5 6665 9999999999865 2223333 4444444 778888
Q ss_pred E--EEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCe
Q psy2145 255 V--YTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQA 332 (808)
Q Consensus 255 ~--Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~ 332 (808)
. |+|.|.|..|....++.|.|...+ +|.+. +....+.+|+.
T Consensus 73 ~g~Y~C~a~n~~~~~~~~~~l~V~~~p-----------------------------------~p~~~--~~~~~v~~G~~ 115 (265)
T 2oz4_A 73 TQRLTCAVILGNQSQETLQTVTIYSFP-----------------------------------APNVI--LTKPEVSEGTE 115 (265)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEECCC-----------------------------------CCEEE--ESCSEEETTCE
T ss_pred cceEEEEEecCCCCcEEEEEEEEeCCC-----------------------------------Cceee--cCCceecCCCc
Confidence 4 999999999998888999987532 34444 23556889999
Q ss_pred EEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCC-cceE---EEEEEEEE
Q psy2145 333 AHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNEL-GEAV---TSSTLFVE 408 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~-g~~~---~~~~l~V~ 408 (808)
+.|.|.+ . |.+.|+| +|.++... +....|.|..+..+|+|.|+|.|.|.. |... ..+.|.|.
T Consensus 116 v~l~C~~--~--p~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~ 181 (265)
T 2oz4_A 116 VTVKCEA--H--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181 (265)
T ss_dssp EEEEEEC--C--TTSEEEE--SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred EEEEEEc--c--CCCEEEE--CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEE
Confidence 9999997 3 8899999 88887432 233468899999999999999998544 7665 56778887
Q ss_pred ecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCC
Q psy2145 409 SKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTE 488 (808)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (808)
.+|.+...
T Consensus 182 ~~p~~~~~------------------------------------------------------------------------ 189 (265)
T 2oz4_A 182 YGPRLDER------------------------------------------------------------------------ 189 (265)
T ss_dssp EEEECCGG------------------------------------------------------------------------
T ss_pred eCCccccc------------------------------------------------------------------------
Confidence 66543210
Q ss_pred CCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECC
Q psy2145 489 PHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH 568 (808)
Q Consensus 489 ~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~ 568 (808)
..+.+ ..+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+.... .|. .
T Consensus 190 -------------------~~p~~-~~v~~g~~~~l~C~~--~g~P~p~i~W~~~~~~~~~~g-----------~~~--~ 234 (265)
T 2oz4_A 190 -------------------DCPGN-WTWPENSQQTPMCQA--WGNPLPELKCLKDGTFPLPIG-----------ESV--T 234 (265)
T ss_dssp -------------------GSCSE-EEEETTCEECCCCCC--EEESCCEEEEEETTTEECCTT-----------SCE--E
T ss_pred -------------------cCCCc-cEEcCCCeEEEEeEC--ccCCCCeEEEEECCcccCCCC-----------cEE--E
Confidence 00001 147889999999998 899999999999998332221 122 3
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 235 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 235 VTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 778999999999999999999999999974
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=266.39 Aligned_cols=276 Identities=12% Similarity=0.130 Sum_probs=181.7
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...|. ..+.+|++++|.|.+ .+. .+.+.|+|+|..+...... .... ..|.|.+++.+|+|.|+|.|
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~--~~~-~~~~~W~k~g~~~~~~~~~--~~~~--~~L~I~~v~~~D~G~Y~C~a 93 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHY--RHR-FNNFMLYKEDRIHIPIFHG--RIFQ--ESFNMSPVTTAHAGNYTCRG 93 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEB--TTB-CCSEEEEESSCSSSCHHHH--CCBS--SCEEECSCCGGGCEEEEEEE
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEc--cCC-CceEEEEeCCCccceeecC--Ccce--EEEEECCCCcccCeEEEEEE
Confidence 56888988887 568899999999999 344 6789999999876432111 1111 27999999999999999999
Q ss_pred EeCc-----eeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEE
Q psy2145 261 VNAL-----GQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335 (808)
Q Consensus 261 ~n~~-----g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l 335 (808)
.|.. +..+..+.|.|.... .+|.+...+... +.+|+.++|
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~----------------------------------~~p~~~~~~~~~-v~~G~~v~L 138 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNH----------------------------------RKPSLLAHPGPL-VKSGERVIL 138 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSS----------------------------------CCCEEEEESCSE-EETTCCEEE
T ss_pred EcCCCCcceecCCCcEEEEEecCC----------------------------------CCCeEEecCCCc-cCCCCeEEE
Confidence 8632 233445677775421 245555444433 889999999
Q ss_pred EEEEeecCCCccEEEEEECCEeccCCCcEEEEe-eCcEEEEEEccCCCCCCeEEEEEEEcCCcce-----EEEEEEEEEe
Q psy2145 336 EARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEA-----VTSSTLFVES 409 (808)
Q Consensus 336 ~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~ 409 (808)
.|.+ . .+.+.+.|+++|..+.......... ......|.|.++..+|+|.|+|.|.|..|.. .....|.|..
T Consensus 139 ~C~~--~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~ 215 (316)
T 3vh8_G 139 QCWS--D-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG 215 (316)
T ss_dssp EEEE--S-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred EEcC--C-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence 9998 3 4567899999998775432211111 1233479999999999999999999988742 2335566653
Q ss_pred cccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCC
Q psy2145 410 KASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEP 489 (808)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (808)
.+
T Consensus 216 ~~------------------------------------------------------------------------------ 217 (316)
T 3vh8_G 216 PY------------------------------------------------------------------------------ 217 (316)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC-cEEEEEECC
Q psy2145 490 HKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-GYVAMDLSH 568 (808)
Q Consensus 490 ~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~ 568 (808)
.+|.+...... .+.+|+.++|.|.+ . .|.+.+.|+|+|..+...........+ ....|.|.+
T Consensus 218 ------------~~p~i~~~~~~--~v~~G~~v~L~C~~--~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~ 280 (316)
T 3vh8_G 218 ------------EKPSLSAQPGP--KVQAGESVTLSCSS--R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGP 280 (316)
T ss_dssp ------------CCCEEEEESCS--CCCTTSCCEEEEEE--S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-
T ss_pred ------------CCCeEEeCCCC--eecCCCcEEEEEEC--C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCC
Confidence 12333333222 47899999999998 4 578899999999877532211111111 224799999
Q ss_pred CCCCCCEEEEEEEEeCCee-----EEEEEEEEEEec
Q psy2145 569 VRAEDEGIYICKATNALGE-----AVTTASMKIKTK 599 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~-----~~~s~~l~V~~~ 599 (808)
++ |+|.|+|.|.|..+. .+..+.|.|...
T Consensus 281 v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 314 (316)
T 3vh8_G 281 AT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314 (316)
T ss_dssp ------CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred cC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence 99 999999999998763 344466666553
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=234.20 Aligned_cols=190 Identities=31% Similarity=0.532 Sum_probs=166.0
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC--CeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
..+|.|..++.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+.... ++.....++...|.|.+++.+|+|.|+
T Consensus 3 ~~~P~~~~~~~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 79 (194)
T 2a38_A 3 TQAPTFTQPLQSV-VVLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79 (194)
T ss_dssp CEEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCCCeEEccCCce-EEECCCEEEEEEEE--EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEE
Confidence 3578899888876 68999999999999 788999999999999987764 666767777789999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
|.|.|..|....++.|.|..... +|.+...+. ...+.+|+.+.|.|
T Consensus 80 C~~~n~~~~~~~~~~l~v~~~~~---------------------------------~p~~~~~~~-~~~~~~g~~~~l~C 125 (194)
T 2a38_A 80 LKATNGSGQATSTAELLVKAETA---------------------------------PPNFVQRLQ-SMTVRQGSQVRLQV 125 (194)
T ss_dssp EEEEETTEEEEEEEEEEEECCCE---------------------------------EEEEEECCC-CEEECTTEEEEEEE
T ss_pred EEEEcCCceEeEEEEEEEccCCC---------------------------------CCEEEeCCc-cEEEcCCCEEEEEE
Confidence 99999999999888888875211 244444433 35688999999999
Q ss_pred EEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 659 RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 659 ~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.+ .|.|.|.|.|++||..+..+.++.+..++...+|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 126 ~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 126 RV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EE--EEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EE--EEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 99 7999999999999999999999999888888899999999999999999999999999999999884
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=239.51 Aligned_cols=201 Identities=20% Similarity=0.296 Sum_probs=150.7
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC--cEEEEEECCCCCCCCEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF--GYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
+|.|..++.. .+.+|+.+.|.|.+. .+.|.|.|+|+|||++|..+.++.+..+. +.++|.|.+++.+|+|.|+|.
T Consensus 3 ~p~~~~~~~~--~v~eg~~v~l~c~~~-~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~ 79 (207)
T 3rbs_A 3 DPFTKSELAV--EILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 79 (207)
T ss_dssp ---CCEEEEE--EECGGGCEEEEEECS-CCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred CCeeecCCce--EEEeCCeEEEEEEEe-cCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence 6788887753 589999999999983 45899999999999999988888777665 777899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v 660 (808)
|.| |.+...+.+.+.......+.. ..+ ...... ....+|.|...+. ..+.+|+.++|.|.+
T Consensus 80 a~N--g~a~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-------------~~~~~P~~~~~~~--~~v~~g~~v~l~C~v 140 (207)
T 3rbs_A 80 LQD--GKATNHSTVVLVGDVFKKLQK-EAE-FQRQEW-------------IRKQGPHFVEYLS--WEVTGECNVLLKCKV 140 (207)
T ss_dssp EEE--TTEEEEEEEEECTHHHHHHHH-HHH-HHHHHH-------------HHHTSSEEEEEEE--EEEETTTEEEEEEEE
T ss_pred EEC--CCeEEEEEEEEEccchhhhcc-ccc-cccccc-------------ccCCCCceEecCC--cEEcCCCcEEEEEEE
Confidence 999 555555554432110000000 000 000000 0012588887763 578999999999999
Q ss_pred eeCCC-CCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 661 VPVGD-PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 661 ~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.|. |.|.|+|+|||.+|..+.++.. ..+..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.++
T Consensus 141 --~g~~P~p~i~W~k~g~~l~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 141 --ANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp --ESCCTTCEEEEEETTEEECCCCCCCC--SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred --eCCCCCCEEEEEECCEECCCCCceEc--CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 798 9999999999999988776532 3455689999999999999999999999999999998764
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=230.29 Aligned_cols=192 Identities=23% Similarity=0.405 Sum_probs=163.3
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEE-eeCcEEEEEECCCCCCCCEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTK-HDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
.+|.|...+.+. .+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+... .++.+. ..++...|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~~~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (197)
T 2j8h_A 3 MAPHFKEELRNL-NVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79 (197)
T ss_dssp CCCEEEECCCCE-EEETTSCEEEEEEE--ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEE
T ss_pred CCCEEEEcCCcc-EEcCCCEEEEEEEE--eecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEE
Confidence 478999888776 68999999999999 79999999999999998764 455554 34666789999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|.|..|....++.|.|...+.+.. |.+...+ ....+.+|+.+.|.|.
T Consensus 80 ~~~n~~g~~~~~~~l~V~~~p~~~~-------------------------------~~~~~~~-~~~~~~~g~~~~l~C~ 127 (197)
T 2j8h_A 80 RATNQGGSVSGTASLEVEVPAKIHL-------------------------------PKTLEGM-GAVHALRGEVVSIKIP 127 (197)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEECC-------------------------------SSCBTTB-EEEEEETTCCCEEEEE
T ss_pred EEEECCCceeEEEEEEEcCCCcCCC-------------------------------Ccccccc-CeEEEeCCCEEEEEEE
Confidence 9999999999999999987655321 2211111 1235778999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEcc-CCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITK-CVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+ .|.|.|.|.|+++|..+..+.++.+.......+|.|.+ +..+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 128 ~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d 197 (197)
T 2j8h_A 128 F--SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197 (197)
T ss_dssp E--EEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred E--EecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence 9 79999999999999999988999988877888999999 999999999999999999999999999863
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=231.47 Aligned_cols=193 Identities=21% Similarity=0.385 Sum_probs=168.6
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
+..+|.|...+.+. .+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+..+.++.+..+++..+|.|.+++.+|+|.|+|
T Consensus 4 ~~~~P~~~~~~~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (197)
T 3lcy_A 4 SGEAPGIRKEMKDV-TTKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80 (197)
T ss_dssp CCEEEEEEECCCCE-EEETTSEEEEEEEE--EEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEE
T ss_pred cCCCCcccccCCce-EEeCCCcEEEEEEE--ecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEE
Confidence 34688998888877 68999999999999 6899999999999999998889888888888899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|.|..|....++.|.|...|.+.... .......+.+|+.+.|.|.
T Consensus 81 ~~~n~~~~~~~~~~l~v~~~p~~~~~~----------------------------------~~~~~~~~~~g~~~~l~C~ 126 (197)
T 3lcy_A 81 IATNEVGEVETSSKLLLQATPQFHPGY----------------------------------PLKEKYYGAVGSTLRLHVM 126 (197)
T ss_dssp EEECSSCEEEEEEEEEEEEEEEECTTS----------------------------------CCCSEEEEETTSCEEEEEE
T ss_pred EEECCCCceeEEEEEEEEcCCCCCCCc----------------------------------cCCcceeecCCCeEEEEEE
Confidence 999999999999999998765432100 0111234678999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCC-CCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP-ADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
+ .|.|.|.|.|++||..+..+.++.+...+....|.|.++.. +|+|.|+|.|.|.+|..+.++.|.|.++
T Consensus 127 ~--~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k 197 (197)
T 3lcy_A 127 Y--IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197 (197)
T ss_dssp E--EEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred E--eeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence 9 79999999999999999999999998888888999999995 8999999999999999999999999764
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=253.55 Aligned_cols=290 Identities=13% Similarity=0.168 Sum_probs=182.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee-----------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT-----------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.|.|||+ |..+. ...|+.+..+ .+..+|.
T Consensus 4 l~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (344)
T 1za6_B 4 LVQSGAE-VVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVE 82 (344)
T ss_dssp EEECCCE-EECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred eeCCCCe-EEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEE
Confidence 4456677 89999999999999853224678999996 43321 2457777655 4667999
Q ss_pred EcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecC
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK 191 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 191 (808)
|.+++.+|+|.|+|.|.|..+.....+.|.|.... ..+|.+...+.
T Consensus 83 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~----------------------------------~~~P~i~~~~~ 128 (344)
T 1za6_B 83 LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS----------------------------------TKGPSVFPLAP 128 (344)
T ss_dssp ECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSC----------------------------------CBCCEEEEECC
T ss_pred ECCCCcccCEEEEEEEecCcceecCcEEEEEecCC----------------------------------CCCCeEEEccc
Confidence 99999999999999999865544455677775311 24566665554
Q ss_pred ceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCc----eEEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFG----FVALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
...+.+|+.++|.|.+.+ ..|. +.|.|+|+|..+...........++ ...|.|.++..+| |.|+|.|.|..|.
T Consensus 129 ~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~ 206 (344)
T 1za6_B 129 SSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 206 (344)
T ss_dssp SCTTTSSSEEEEEEEEEE-EBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred cccccCCCcEEEEEEEee-EECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 556789999999999953 2354 7999999998642110000111111 1269999998878 9999999998886
Q ss_pred EEEEEEEEEeeCCccccccc----ccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeec
Q psy2145 267 AVTSGNLLVHSKKSIQTETQ----HGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPV 342 (808)
Q Consensus 267 ~~~~~~l~V~~~~~i~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~ 342 (808)
......+.+... +....- .+..+. .......+|.+..........+|+.+.|.|.+ .
T Consensus 207 ~~~~~~~~~~v~--~~~~~~~~~~~~~~l~---------------~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~--~ 267 (344)
T 1za6_B 207 TKVDKKVEPKSC--DKTHTCPPCGGGSSGG---------------GSGGQPREPQVYTLPPSRDELTKNQVSLTCLV--K 267 (344)
T ss_dssp EEEEEEECCCCC-------------------------------------CCBCCEEEEECCCGGGGGSSSEEEEEEE--E
T ss_pred ccceEeeccccc--ccccccCCCCCCcccc---------------ccCCCCcCCEEEEeCCChHhccCCcEEEEEEE--e
Confidence 544333321100 000000 000000 00001235554433222223356679999999 5
Q ss_pred C-CC-ccEEEEEECCEeccCCCcEE--EEeeCcE---EEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2145 343 G-DS-KLKVTWLRNGVPIQASNRVS--TMHDFGY---VALNFKYTYPEDSGTYTCRAVNELGE 398 (808)
Q Consensus 343 g-~p-~~~v~W~~~g~~l~~~~~~~--~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~n~~g~ 398 (808)
| .| .+.|+|+|||..+....... ...++.+ ..|.|.....+|+|.|+|.|.|....
T Consensus 268 g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 268 GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp EEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred eEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 5 34 47999999999886432211 1222222 34667666667899999999997643
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=228.07 Aligned_cols=195 Identities=21% Similarity=0.326 Sum_probs=149.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeC--CeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--GYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
.+.++ .+.+|+.+.|.|.+.. +.|.+.|.|||||++|..+.++.+..+. +..+|.|.+++.+|+|.|+|.|.| |
T Consensus 8 ~~~~~-~v~eg~~v~l~c~~~~-~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g 83 (207)
T 3rbs_A 8 SELAV-EILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--G 83 (207)
T ss_dssp EEEEE-EECGGGCEEEEEECSC-CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--T
T ss_pred cCCce-EEEeCCeEEEEEEEec-CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--C
Confidence 34456 8999999999999975 5799999999999999998888877665 777899999999999999999999 6
Q ss_pred ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCC
Q psy2145 133 FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSD 212 (808)
Q Consensus 133 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~ 212 (808)
.+.....+.+........ .......... .....+|.|...+ +..+.+|+.++|.|.+ .+.
T Consensus 84 ~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~---~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v--~g~ 143 (207)
T 3rbs_A 84 KATNHSTVVLVGDVFKKL--------------QKEAEFQRQE---WIRKQGPHFVEYL-SWEVTGECNVLLKCKV--ANI 143 (207)
T ss_dssp TEEEEEEEEECTHHHHHH--------------HHHHHHHHHH---HHHHTSSEEEEEE-EEEEETTTEEEEEEEE--ESC
T ss_pred CeEEEEEEEEEccchhhh--------------cccccccccc---cccCCCCceEecC-CcEEcCCCcEEEEEEE--eCC
Confidence 666665554321100000 0000000000 0012478888877 5789999999999999 577
Q ss_pred -CCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 213 -NTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 213 -p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
|.+.|+|+|||.+|..+.++ ....+..+|.|.++..+|+|.|+|.|.|..|.+.+++.|.+
T Consensus 144 ~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 144 KKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp CTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 89999999999999876654 23445668999999999999999999999999999998875
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-26 Score=224.35 Aligned_cols=196 Identities=22% Similarity=0.372 Sum_probs=157.9
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee-CcEEEEEECCC-CCCCCEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FGYVAMDLSHV-RAEDEGIYIC 579 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v-~~~D~G~Y~C 579 (808)
.+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+..+........ +....|.|.++ +.+|+|.|+|
T Consensus 5 ~~P~~~~~p~~~-~v~~G~~v~L~C~~--~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 81 (212)
T 2yd6_A 5 TPPRFTRTPVDQ-TGVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC 81 (212)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred CCCeEEeCccee-EEecCCeEEEEEEE--eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence 488999888886 68999999999999 6899999999999999976544333322 34568999999 5999999999
Q ss_pred EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|.|..|....++.|.|...+.+. ...|.+...+. ...+.+|+.+.|.|.
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~~-----------------------------~~~p~~~~~~~-~~~~~~g~~v~l~C~ 131 (212)
T 2yd6_A 82 VASNNVGEISVSTRLTVLREDQIP-----------------------------RGFPTIDMGPQ-LKVVERTRTATMLCA 131 (212)
T ss_dssp EEEETTEEEEEEEEEEEECGGGCC-----------------------------TTCCEEEECCC-CEEEETTSCEEEEEE
T ss_pred EEEcCCCcEEEEEEEEEeccCccC-----------------------------CCcceeecCCc-ceeEecCCCEEEEEE
Confidence 999999999999999998754321 02355655443 346888999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCC---CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEEEeCC
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMG---SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKS 732 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~p 732 (808)
+ .|.|.|.|.|++||..+..+ .++.+........|.|.++..+|+|.|+|.|+|.+|...+ .+.|.|...+
T Consensus 132 ~--~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 132 A--SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206 (212)
T ss_dssp E--ECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred e--cCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence 9 79999999999999999864 5677777777889999999999999999999999998865 4788887664
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=222.55 Aligned_cols=190 Identities=30% Similarity=0.477 Sum_probs=166.7
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC--ceEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
..+|.|...+.+..+.+|++++|.|.+ .+.|.+.+.|+|+|..+.... ++.....++..+|.|.+++.+|+|.|+|
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 3 TQAPTFTQPLQSVVVLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEE--EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCeEEccCCceEEECCCEEEEEEEE--EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence 458899999999999999999999999 467788999999999987654 5666666677799999999999999999
Q ss_pred EEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 259 RAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
.|.|..|....++.|.|.... .+|.+...+....+.+|+.+.|.|.
T Consensus 81 ~~~n~~~~~~~~~~l~v~~~~----------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~ 126 (194)
T 2a38_A 81 KATNGSGQATSTAELLVKAET----------------------------------APPNFVQRLQSMTVRQGSQVRLQVR 126 (194)
T ss_dssp EEEETTEEEEEEEEEEEECCC----------------------------------EEEEEEECCCCEEECTTEEEEEEEE
T ss_pred EEEcCCceEeEEEEEEEccCC----------------------------------CCCEEEeCCccEEEcCCCEEEEEEE
Confidence 999999988888888886421 3566776677788999999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
+ .|.|.+.+.|+++|..+..+.++.+..++...+|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 127 ~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 127 V--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp E--EEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred E--EEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 9 7889999999999999998888888888888899999999999999999999999999888888874
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=222.80 Aligned_cols=193 Identities=30% Similarity=0.462 Sum_probs=158.2
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecC-CCCCeEEEe-eCcEEEEEECCCCC-CCCEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE-DSSRITTKH-DFGYVAMDLSHVRA-EDEGIYI 578 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~-~~~~~~~~~-~~~~~~L~I~~v~~-~D~G~Y~ 578 (808)
.||.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+. ...++.+.. .++...|.|.++.. +|+|.|+
T Consensus 5 ~pP~~~~~p~~~-~v~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 5 HPPEIIRKPQNQ-GVRVGGVASFYCAA--RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp CCCEEEECCCCE-EEETTSCEEEEEEE--ECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred CCCEEEcCCCce-EEecCCEEEEEEEE--ccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence 589999988887 68999999999999 789999999999999997 456666553 35567899999999 9999999
Q ss_pred EEEEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 579 CKATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 579 C~a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
|.|.|..|. ...++.|.|...+... ...|.|...+. ...+.+|+.+.|.
T Consensus 82 C~~~n~~g~~~~~~~~l~V~~~~~~~-----------------------------~~~p~~~~~~~-~~~~~~g~~v~l~ 131 (212)
T 2yd1_A 82 CVAENGVGDAVSADATLTIYEGDKTP-----------------------------AGFPVITQGPG-TRVIEVGHTVLMT 131 (212)
T ss_dssp EEEECSSSCEEEEEEEEEEECTTCSC-----------------------------TTCCEEEECCC-CEEEETTCCEEEC
T ss_pred EEEEeCCCCeEEeeEEEEEecccCCC-----------------------------CCCCeeEeCCC-ceEeecCCeEEEE
Confidence 999999998 7888899998653210 01366665543 3568899999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE-EEEEEEeCCC
Q psy2145 658 CRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS-TSLKVKSKSD 733 (808)
Q Consensus 658 C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s-~~l~V~~~p~ 733 (808)
|.+ .|.|.|.|.|++||..+..+ .++.+. ++ .|.|.++..+|+|.|+|.|.|.+|...+. +.|.|+....
T Consensus 132 C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~ 203 (212)
T 2yd1_A 132 CKA--IGNPTPNIYWIKNQTKVDMSNPRYSLK--DG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203 (212)
T ss_dssp CEE--ECSSCCEEEEEETTEECCTTSTTEEEE--TT--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred EEe--ccCCCCeEEEEECCeEcccCCCeEEcc--CC--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence 999 79999999999999999864 455432 33 89999999999999999999999999875 8999997754
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=249.51 Aligned_cols=259 Identities=16% Similarity=0.266 Sum_probs=166.7
Q ss_pred CeEEEEEEEeecCC-C-ccEEEEEECCEeccCCCcE-EEEeeCcE----EEEEEccCCCCCCeEEEEEEEcCCcceEEEE
Q psy2145 331 QAAHFEARLIPVGD-S-KLKVTWLRNGVPIQASNRV-STMHDFGY----VALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403 (808)
Q Consensus 331 ~~~~l~C~~~~~g~-p-~~~v~W~~~g~~l~~~~~~-~~~~~~~~----~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~ 403 (808)
+.+.|.|.+ .|. | .+.|+|+|||.++..+... ....+++. ..|.|..+..+|+|.|+|.|.|..|.....+
T Consensus 25 ~~v~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 102 (323)
T 2wqr_A 25 PTIQLLCLV--SGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST 102 (323)
T ss_dssp SEEEEEEEE--EEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEE--eCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence 699999999 453 4 5899999999998755322 11122332 3578888888899999999999876543222
Q ss_pred EEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcc
Q psy2145 404 TLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRK 483 (808)
Q Consensus 404 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (808)
.+.+..
T Consensus 103 ~~~~~~-------------------------------------------------------------------------- 108 (323)
T 2wqr_A 103 KKCADS-------------------------------------------------------------------------- 108 (323)
T ss_dssp CCCCCS--------------------------------------------------------------------------
T ss_pred ecCCCC--------------------------------------------------------------------------
Confidence 110000
Q ss_pred cccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCC-CCCc---EEEEEECC-EecCCCCCeEEEee
Q psy2145 484 LEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVG-DPTL---KVEWFRNE-KPLEDSSRITTKHD 558 (808)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~~---~v~W~k~g-~~l~~~~~~~~~~~ 558 (808)
....++.|+.++... .+.+|+.+.|.|.+ .| .|.+ .|+|+|++ ..+...........
T Consensus 109 ---------------~~~~p~v~~~~p~~~-~v~~G~~v~L~C~~--~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~ 170 (323)
T 2wqr_A 109 ---------------NPRGVSAYLSRPSPF-DLFIRKSPTITCLV--VDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQR 170 (323)
T ss_dssp ---------------SGGGCEEEECCCCHH-HHHTSSCCEEEEEE--EEECCCSSCCEEEEEETTCCCCCCCCCEEEECT
T ss_pred ---------------CCCCCEEEEcCCCHH-HhccCCeEEEEEEE--eccCCCCCceEEEEEECCCcccccccCCCccCC
Confidence 000122233333322 47899999999998 45 4555 89999974 55543322221111
Q ss_pred C----cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccC
Q psy2145 559 F----GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYE 634 (808)
Q Consensus 559 ~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~ 634 (808)
. ....|.|.++..+|+|.|+|.|.|..+.... .+.|..... ...
T Consensus 171 ~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~------------------------------~~~ 218 (323)
T 2wqr_A 171 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSG------------------------------PRA 218 (323)
T ss_dssp TSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCS------------------------------CCB
T ss_pred CCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCC------------------------------CCC
Confidence 1 1237999999999999999999998754332 333321100 012
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCC-CCC-eEEEEEECCEEccCCCcEEE----EEeCC----EEEEEEccCCCC
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVG-DPT-MRFEWFVNGVELKMGSRFHV----QHDFG----YVTLDITKCVPA 704 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~-p~i~W~~~g~~l~~~~~~~~----~~~~~----~~~L~I~~v~~~ 704 (808)
+|.+.........+ +|+.++|.|.+ .| .|. +.|.|+|||.+|..+. +.. ...++ .+.|.|..+..+
T Consensus 219 ~P~v~~~~~~~~~~-~g~~~~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~ 294 (323)
T 2wqr_A 219 APEVYAFATPEWPG-SRDKRTLACLI--QNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWE 294 (323)
T ss_dssp CCEEEEEECCCCTT-CTTEEEEEEEE--EEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHH
T ss_pred CCEEEEeCCChHHh-cCCcEEEEEEe--eeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHcc
Confidence 46555443332233 49999999999 56 444 3899999999987542 211 11111 357999999999
Q ss_pred CcEEEEEEEEeCCcc
Q psy2145 705 DSGVYMCKAINRAGE 719 (808)
Q Consensus 705 D~G~Y~C~A~N~~G~ 719 (808)
|+|.|+|.|.|..+.
T Consensus 295 d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 295 QKDEFICRAVHEAAS 309 (323)
T ss_dssp HCCCEEEEEECTTST
T ss_pred CCCEEEEEEEeCCCC
Confidence 999999999999887
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=216.62 Aligned_cols=179 Identities=26% Similarity=0.420 Sum_probs=150.2
Q ss_pred CCCeeeecCCCcccccC-CCceEEEEEEeeCCCCC--cEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEE-GKNAHFSCRLIPVGDPT--LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~-G~~v~l~C~v~~~g~P~--~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
.||.+..+... .+.+ |+.+.|.|.+ .+.|. +.+.|+|+|..+..+.... ....|.|.+++.+|+|.|+
T Consensus 2 ~~P~i~~~~~~--~v~~~G~~v~l~C~~--~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~ 72 (190)
T 2wv3_A 2 NEPRIVTSEEV--IIRDSLLPVTLQCNL--TSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYH 72 (190)
T ss_dssp -CCEEEECCCE--ECCCSSSCEEEEEEE--EECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEE
T ss_pred CCCcccccceE--EEccCCceEEEEEEe--ccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEE
Confidence 36777775443 3556 9999999999 56776 8899999999998765432 3348999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
|.|.|. |....++.|.|... |.+..... ...+.+|+.+.|.|
T Consensus 73 C~~~n~-~~~~~~~~l~V~~~------------------------------------p~~~~~~~-~~~~~~g~~v~l~C 114 (190)
T 2wv3_A 73 CVYHFV-SAPKANATIEVKAA------------------------------------PDITGHKR-SENKNEGQDAMMYC 114 (190)
T ss_dssp EEEEET-TEEEEEEEEEEECC------------------------------------CEEEEECS-EEEEETTSCEEEEE
T ss_pred EEEEeC-CcccccEEEEEecC------------------------------------CcccccCC-cceeeCCCcEEEEE
Confidence 999999 99999999999864 44444332 34688999999999
Q ss_pred EEeeCCCCCeEEEEEE--CCEEcc---CCCcEEEEEeCCEEEEEEccCC-CCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 659 RVVPVGDPTMRFEWFV--NGVELK---MGSRFHVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 659 ~v~~~g~P~p~i~W~~--~g~~l~---~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.+ .|.|.|.|.|++ +|..+. .+.++.+..+++..+|.|.++. .+|+|.|+|.|.|.+|..+.++.|.|+
T Consensus 115 ~~--~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 115 KS--VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EE--ECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred Ee--CccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 99 799999999999 898876 5778888888888899999999 799999999999999999999999986
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=221.11 Aligned_cols=195 Identities=19% Similarity=0.245 Sum_probs=156.3
Q ss_pred cCCCceEEEEEEeeCC-CCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEE
Q psy2145 517 EEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMK 595 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g-~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 595 (808)
-.|+.+.|.|.+ .+ .|.+.|+|+|+|..+..+.++.+..+++...|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 15 c~~~~~~l~C~~--~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~ 92 (212)
T 2r15_A 15 STAEGIQLYSFV--TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92 (212)
T ss_dssp ECSSEEEEEEEB--SSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred EcCceEEEEEEE--eccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence 368888999998 56 568999999999999999999888888888899999999999999999999999888777776
Q ss_pred EEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEEC
Q psy2145 596 IKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVN 675 (808)
Q Consensus 596 V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~ 675 (808)
|...+..... .+.+... ......+|.+.........+.+|+.+.|.|.+ .|.|.|.|.|+||
T Consensus 93 v~~~~~~~~~---------~~~~~~~-------~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~--~g~p~p~v~W~~~ 154 (212)
T 2r15_A 93 GQAYDEAYAE---------FQRLKQA-------AIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKN 154 (212)
T ss_dssp HHHHHHHHHH---------HHHHHHH-------HHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE--ECSSCCEEEEEET
T ss_pred Eeeccchhhh---------ccccCcc-------cccccCCCcccccCCCcEEEccCCeEEEEEEE--cCCCCceEEEEEC
Confidence 5431110000 0000000 00001136666665555678999999999999 7999999999999
Q ss_pred CEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 676 GVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 676 g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
|.++..+.++.+... ++.+.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 155 EKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp TEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 999999999988776 67889999999999999999999999999999999999754
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=245.87 Aligned_cols=263 Identities=13% Similarity=0.191 Sum_probs=169.3
Q ss_pred CcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE-EEEeeCCe----EEEEEcccCcCCCeeEEEEEEecCcceEEEEEE
Q psy2145 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF-RPIHDFGY----VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~-~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 140 (808)
+.++|.|.+.+...+.+.|.|+|||..|..+... ....+++. ..|.|.++..+|+|.|+|+|.|..+.....+.+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 104 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK 104 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence 6999999998632235799999999998765432 11222332 258888888899999999999987654333221
Q ss_pred EEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCe---EE
Q psy2145 141 QCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM---KV 217 (808)
Q Consensus 141 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~---~v 217 (808)
.+.. ....++.+...+....+.+|++++|.|.+.+ ..|.+ .|
T Consensus 105 ~~~~----------------------------------~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g-~~P~p~~~~i 149 (323)
T 2wqr_A 105 CADS----------------------------------NPRGVSAYLSRPSPFDLFIRKSPTITCLVVD-LAPSKGTVQL 149 (323)
T ss_dssp CCCS----------------------------------SGGGCEEEECCCCHHHHHTSSCCEEEEEEEE-ECCCSSCCEE
T ss_pred CCCC----------------------------------CCCCCEEEEcCCCHHHhccCCeEEEEEEEec-cCCCCCceEE
Confidence 0000 0022334455566667889999999999953 23444 99
Q ss_pred EEeeCC-EEccCCCceEEEecC----ceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhh
Q psy2145 218 EWFHNN-VPIKSGSRFTETNNF----GFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLS 292 (808)
Q Consensus 218 ~W~~~g-~~l~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~ 292 (808)
.|+|++ ..+............ ....|.|.++..+|+|.|+|.|.|..+... +.+.|....
T Consensus 150 ~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~~------------- 214 (323)
T 2wqr_A 150 TWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKTS------------- 214 (323)
T ss_dssp EEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCCC-------------
T ss_pred EEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCC--eeeEEEccC-------------
Confidence 999964 554433222211111 123799999999999999999999764332 234442100
Q ss_pred hhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC-CCc-cEEEEEECCEeccCCCcEE----E
Q psy2145 293 RLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG-DSK-LKVTWLRNGVPIQASNRVS----T 366 (808)
Q Consensus 293 ~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p~-~~v~W~~~g~~l~~~~~~~----~ 366 (808)
....+|.+...+.......|+.+.|.|.+ .| .|. +.|.|+|||.+|..+.... .
T Consensus 215 ------------------~~~~~P~v~~~~~~~~~~~g~~~~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~ 274 (323)
T 2wqr_A 215 ------------------GPRAAPEVYAFATPEWPGSRDKRTLACLI--QNFMPEDISVQWLHNEVQLPDARHSTTQPRK 274 (323)
T ss_dssp ------------------SCCBCCEEEEEECCCCTTCTTEEEEEEEE--EEEBSSCCEEEEEETTEECCGGGEEECCCEE
T ss_pred ------------------CCCCCCEEEEeCCChHHhcCCcEEEEEEe--eeeeCCCcEEEEEECCEECCCCceeecCccc
Confidence 01124544322222122239999999999 45 443 4899999999986542111 1
Q ss_pred EeeCc---EEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2145 367 MHDFG---YVALNFKYTYPEDSGTYTCRAVNELGE 398 (808)
Q Consensus 367 ~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 398 (808)
..++. ...|.|..+..+|+|.|+|.|.|..+.
T Consensus 275 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 275 TKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp CSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 11221 246999999999999999999998876
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=245.30 Aligned_cols=282 Identities=15% Similarity=0.206 Sum_probs=176.4
Q ss_pred CceEeecCCeEEEEEEEeecCC--CccEEEEEEC--CEecc-----------------CCCcEEEEee--CcEEEEEEcc
Q psy2145 323 RDIHVAENQAAHFEARLIPVGD--SKLKVTWLRN--GVPIQ-----------------ASNRVSTMHD--FGYVALNFKY 379 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~ 379 (808)
....+.+|+.+.|.|.+ .+. +.+.|.|+|+ |..+. ...|+.+..+ ++..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 8 GAEVVKPGASVKISCKA--SGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp CCEEECTTCCEEEEEEE--ESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCeEEeCCCcEEEEEEc--CCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 45678999999999999 554 4688999996 43321 1357776654 4567899999
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEEEEEecccccccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCc
Q psy2145 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPT 459 (808)
Q Consensus 380 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 459 (808)
+..+|+|.|+|.|.|..+.....+.|.|...+.
T Consensus 86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~----------------------------------------------- 118 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAST----------------------------------------------- 118 (344)
T ss_dssp CCGGGCEEEEEEETTTTCEECCCEEEEECSSCC-----------------------------------------------
T ss_pred CCcccCEEEEEEEecCcceecCcEEEEEecCCC-----------------------------------------------
Confidence 999999999999999655444456677753110
Q ss_pred eeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCC-CC-cE
Q psy2145 460 ELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD-PT-LK 537 (808)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~-~~ 537 (808)
.+|.+....... .+.+|+.++|.|.+ .|. |. +.
T Consensus 119 ------------------------------------------~~P~i~~~~~~~-~~~~g~~v~L~C~~--~g~~P~~~~ 153 (344)
T 1za6_B 119 ------------------------------------------KGPSVFPLAPSS-KSTSGGTAALGCLV--KDYFPEPVT 153 (344)
T ss_dssp ------------------------------------------BCCEEEEECCSC-TTTSSSEEEEEEEE--EEEBSSCCC
T ss_pred ------------------------------------------CCCeEEEccccc-cccCCCcEEEEEEE--eeEECCCeE
Confidence 122222211121 36789999999999 565 65 79
Q ss_pred EEEEECCEecCC---------CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccC
Q psy2145 538 VEWFRNEKPLED---------SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQH 608 (808)
Q Consensus 538 v~W~k~g~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~ 608 (808)
|+|+|+|..+.. +.++.. ...|.|.++..+| |.|+|.|.|..|.......+.+... +......
T Consensus 154 v~W~k~g~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~--~~~~~~~ 225 (344)
T 1za6_B 154 VSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSC--DKTHTCP 225 (344)
T ss_dssp EEETTTTBCTTEEECCCEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC---------
T ss_pred EEEecCCccCceeECCCeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeeccccc--ccccccC
Confidence 999999986421 122221 1269999999888 9999999999987654444332110 0000000
Q ss_pred cccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-C-CeEEEEEECCEEccCCCcEE
Q psy2145 609 PEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-P-TMRFEWFVNGVELKMGSRFH 686 (808)
Q Consensus 609 p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P-~p~i~W~~~g~~l~~~~~~~ 686 (808)
+ ......-........+|.+........ ..+|..++|.|.+ .|. | .+.|.|+|||..+.......
T Consensus 226 ~----------~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~--~g~~P~~~~v~W~k~g~~~~~~~~~~ 292 (344)
T 1za6_B 226 P----------CGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLV--KGFYPSDIAVEWESNGQPENNYKTTP 292 (344)
T ss_dssp -----------------------CCBCCEEEEECCCGG-GGGSSSEEEEEEE--EEEBSSCCEEEEESSSSCCCSEEECC
T ss_pred C----------CCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEE--eeEECCCeEEEEEECCeECCCcEecc
Confidence 0 000000000001123566655543322 3346679999999 674 4 47999999999886543222
Q ss_pred EE--EeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 687 VQ--HDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 687 ~~--~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+. .++.+ +.|.|.....+|+|.|+|.|.|....
T Consensus 293 ~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 293 PVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp CEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred eEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 21 12222 35667666667899999999998654
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=217.24 Aligned_cols=191 Identities=21% Similarity=0.336 Sum_probs=162.7
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCC-CceEEE-ecCceEEEEEccCCCCCcEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSG-SRFTET-NNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~-~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
.+|.|...+.+..+.+|++++|.|.+ .+.|.+.+.|+|+|..+... .++... ..++..+|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEE--ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEE--eecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence 58999999999999999999999999 57888999999999998754 455544 356677999999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
|.|..|....++.|.|..++.+ ..|.+...+....+.+|+.+.|.|.+
T Consensus 81 ~~n~~g~~~~~~~l~V~~~p~~--------------------------------~~~~~~~~~~~~~~~~g~~~~l~C~~ 128 (197)
T 2j8h_A 81 ATNQGGSVSGTASLEVEVPAKI--------------------------------HLPKTLEGMGAVHALRGEVVSIKIPF 128 (197)
T ss_dssp EEETTEEEEEEEEEEEEEEEEE--------------------------------CCSSCBTTBEEEEEETTCCCEEEEEE
T ss_pred EEECCCceeEEEEEEEcCCCcC--------------------------------CCCccccccCeEEEeCCCEEEEEEEE
Confidence 9999999888899998764422 12333333455678899999999999
Q ss_pred eecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEcc-CCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKY-TYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 340 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
.|.|.+.+.|+++|..+..+.++.+.......+|.|.+ +..+|+|.|+|.|.|..|....++.|.|.
T Consensus 129 --~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 129 --SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp --EEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --EecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 68899999999999999888888877776777999999 99999999999999999999888888885
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=225.79 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=132.4
Q ss_pred cccCCCceEEEEEEee-CCCCCcEEEEEECCEecCC-----------------CCCeEEEeeCcEEEEEECCCCCCCCEE
Q psy2145 515 AVEEGKNAHFSCRLIP-VGDPTLKVEWFRNEKPLED-----------------SSRITTKHDFGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~-~g~P~~~v~W~k~g~~l~~-----------------~~~~~~~~~~~~~~L~I~~v~~~D~G~ 576 (808)
++..|+.++|+|.+.. .+.|.+.|+|+|+|..+.. ..++.+..+.+...|.|.+++.+|+|.
T Consensus 4 ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 83 (203)
T 4fa8_A 4 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 83 (203)
T ss_dssp EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeE
Confidence 5789999999995310 6789999999998754321 234555566777899999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEE
Q psy2145 577 YICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656 (808)
Q Consensus 577 Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l 656 (808)
|+|.|.|..|..+..+.|.|..+ |.+...+ ....+.+|+.++|
T Consensus 84 Y~C~a~n~~g~~~~~~~l~V~~p------------------------------------~~~~~~~-~~~~v~~g~~~~l 126 (203)
T 4fa8_A 84 YLCRMKLGETEVTKQEHLSVVKP------------------------------------LTLSVHS-ERSQFPDFSVLTV 126 (203)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEE------------------------------------EEEEEEE-EECCSSCSCCEEE
T ss_pred EEEEEEcCCCcEEEEEEEEecCC------------------------------------ceeeecc-eeEEEcCCCEEEE
Confidence 99999999999999999999864 3333332 2356889999999
Q ss_pred EEEEeeCCCCCeEEEEEECCEEcc----CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 657 DCRVVPVGDPTMRFEWFVNGVELK----MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 657 ~C~v~~~g~P~p~i~W~~~g~~l~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
.|.+ .|.|.|.|+|++++..+. .+.++.+..++....|.|.++..+|+|.|+|.|+|.+|++...
T Consensus 127 ~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 127 TCTV--NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp EEEE--EEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred EEEc--CCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 9999 799999999998765442 3556777666667788889999999999999999999998753
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=214.79 Aligned_cols=196 Identities=22% Similarity=0.338 Sum_probs=159.5
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-cCceEEEEEccC-CCCCcEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-NFGFVALDIMQC-LPEDSGVYTC 258 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~~-~~~D~G~Y~C 258 (808)
..+|.|...+.+..+.+|+++.|.|.+ .+.|.+.|.|+|+|..+..+....... +.....|.|.++ ..+|+|.|+|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~--~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 81 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC 81 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEE--EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEE--eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence 468999999999999999999999999 467888999999999997654433332 234557999999 5999999999
Q ss_pred EEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 259 RAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
.|.|..|....++.|.|...+.+ ....|.+...+....+.+|+.+.|.|.
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~------------------------------~~~~p~~~~~~~~~~~~~g~~v~l~C~ 131 (212)
T 2yd6_A 82 VASNNVGEISVSTRLTVLREDQI------------------------------PRGFPTIDMGPQLKVVERTRTATMLCA 131 (212)
T ss_dssp EEEETTEEEEEEEEEEEECGGGC------------------------------CTTCCEEEECCCCEEEETTSCEEEEEE
T ss_pred EEEcCCCcEEEEEEEEEeccCcc------------------------------CCCcceeecCCcceeEecCCCEEEEEE
Confidence 99999999888889998753211 113467777777778899999999999
Q ss_pred EeecCCCccEEEEEECCEeccCC---CcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEEEec
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQAS---NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVESK 410 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~---~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~ 410 (808)
+ .|.|.+.|.|+++|..+... .++....+.....|.|.++..+|+|.|+|.|.|..|...++ +.|.|...
T Consensus 132 ~--~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~ 205 (212)
T 2yd6_A 132 A--SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205 (212)
T ss_dssp E--ECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred e--cCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence 9 79999999999999998764 46666666667799999999999999999999999988765 88888754
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=213.56 Aligned_cols=191 Identities=20% Similarity=0.347 Sum_probs=165.1
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.++.+.+|+++.|.|.+ .+.|.+.+.|+|+|..+....++....+++..+|.|.++..+|+|.|+|.|
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEE--EEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEE--ecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence 568999999999999999999999999 467888999999999999888888888888889999999999999999999
Q ss_pred EeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEe
Q psy2145 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLI 340 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~ 340 (808)
.|..|.....+.|.|...+.+. +. ........+.+|+.+.|.|.+
T Consensus 83 ~n~~~~~~~~~~l~v~~~p~~~---------------------------------~~-~~~~~~~~~~~g~~~~l~C~~- 127 (197)
T 3lcy_A 83 TNEVGEVETSSKLLLQATPQFH---------------------------------PG-YPLKEKYYGAVGSTLRLHVMY- 127 (197)
T ss_dssp ECSSCEEEEEEEEEEEEEEEEC---------------------------------TT-SCCCSEEEEETTSCEEEEEEE-
T ss_pred ECCCCceeEEEEEEEEcCCCCC---------------------------------CC-ccCCcceeecCCCeEEEEEEE-
Confidence 9999998888888887643211 00 011234567899999999999
Q ss_pred ecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCC-CCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy2145 341 PVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYP-EDSGTYTCRAVNELGEAVTSSTLFVES 409 (808)
Q Consensus 341 ~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 409 (808)
.|.|.+.+.|+++|..+..+.++.+...+....|.|.++.. +|+|.|+|.|.|..|....++.|.|.+
T Consensus 128 -~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 128 -IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp -EEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred -eeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 78999999999999999988888888777777999999995 899999999999999999889998875
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-26 Score=219.34 Aligned_cols=185 Identities=26% Similarity=0.468 Sum_probs=152.0
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
..+|.|..++.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+.. ..++.+..++. .|.|.+++.+|+|.|+|
T Consensus 5 ~~~P~i~~~~~~~-~~~~G~~v~l~C~~--~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C 79 (192)
T 2iep_A 5 PKAPVITTPLETV-DALVEEVATFMCAV--ESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCC 79 (192)
T ss_dssp CEEEEESSCCCEE-EEETTSCEEEECCE--EEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEE
T ss_pred CCCceeecCccce-eeeCCCcEEEEeeC--CCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEE
Confidence 3468888877765 68999999999999 6889999999999999875 45666665544 79999999999999999
Q ss_pred EEEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 580 KATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 580 ~a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
.+.|..|. ....+.|.|...|. +..... ...+.+|+.+.|.|
T Consensus 80 ~~~~~~~~~~~~~~~l~v~~~p~------------------------------------~~~~~~-~~~~~~g~~~~l~C 122 (192)
T 2iep_A 80 TANNGVGGAVESCGALQVKMKPK------------------------------------ITRPPI-NVKIIEGLKAVLPC 122 (192)
T ss_dssp EEECSSSCCEEEEEEEEEEEEEE------------------------------------EEECCC-CEEEETTSCEEECC
T ss_pred EEEcCCCceeEeEEEEEEEeCCc------------------------------------cccCCc-ceEEeCCCcEEEEE
Confidence 99999887 55667888876533 333222 34678999999999
Q ss_pred EEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE-EEEEEEEEeCC
Q psy2145 659 RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV-SSTSLKVKSKS 732 (808)
Q Consensus 659 ~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~s~~l~V~~~p 732 (808)
.+ .|.|.+.|.|+++|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|... .++.|.|..+|
T Consensus 123 ~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 123 TT--MGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EE--EEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EE--eccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 99 79999999999999999988887665433 699999999999999999999999884 46899998764
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=212.60 Aligned_cols=190 Identities=26% Similarity=0.429 Sum_probs=158.2
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee-ccCcEEEEee-CCeEEEEEcccCc-CCCeeEEE
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT-IGHRFRPIHD-FGYVALDIIDTIP-EDSGTYTC 125 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~-~~~r~~~~~~-~~~~~L~I~~~~~-~D~G~Y~C 125 (808)
.+.++..|.++ .+.+|++++|.|.+. +.|.+.|.|+|+|..+. ...++.+... ++..+|.|.++.. +|+|.|+|
T Consensus 6 pP~~~~~p~~~-~v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 82 (212)
T 2yd1_A 6 PPEIIRKPQNQ-GVRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC 82 (212)
T ss_dssp CCEEEECCCCE-EEETTSCEEEEEEEE--CSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred CCEEEcCCCce-EEecCCEEEEEEEEc--cCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence 46667788888 899999999999998 57888999999999997 5667776543 5567999999999 99999999
Q ss_pred EEEecCcc-eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEE
Q psy2145 126 RAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFE 204 (808)
Q Consensus 126 ~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~ 204 (808)
.|.|..|. ....+.|.|...... ...+|.|...+....+.+|+.+.|.
T Consensus 83 ~~~n~~g~~~~~~~~l~V~~~~~~-------------------------------~~~~p~~~~~~~~~~~~~g~~v~l~ 131 (212)
T 2yd1_A 83 VAENGVGDAVSADATLTIYEGDKT-------------------------------PAGFPVITQGPGTRVIEVGHTVLMT 131 (212)
T ss_dssp EEECSSSCEEEEEEEEEEECTTCS-------------------------------CTTCCEEEECCCCEEEETTCCEEEC
T ss_pred EEEeCCCCeEEeeEEEEEecccCC-------------------------------CCCCCeeEeCCCceEeecCCeEEEE
Confidence 99999998 778888888754221 1335888888888899999999999
Q ss_pred EEEeecCCCCeEEEEeeCCEEccCC-CceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEE-EEEEEeeC
Q psy2145 205 CRLIPVSDNTMKVEWFHNNVPIKSG-SRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS-GNLLVHSK 278 (808)
Q Consensus 205 C~~~~~~~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~ 278 (808)
|.+ .+.|.+.|.|+++|..+... .++... + + +|.|.++..+|+|.|+|.|.|..|...+. +.|.|...
T Consensus 132 C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~-~-~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~ 201 (212)
T 2yd1_A 132 CKA--IGNPTPNIYWIKNQTKVDMSNPRYSLK-D-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR 201 (212)
T ss_dssp CEE--ECSSCCEEEEEETTEECCTTSTTEEEE-T-T--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred EEe--ccCCCCeEEEEECCeEcccCCCeEEcc-C-C--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence 999 58888999999999999763 444333 2 3 89999999999999999999999998765 89999864
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=214.05 Aligned_cols=178 Identities=17% Similarity=0.310 Sum_probs=145.6
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeC-CCCCcEEEEEECCEecCCCC--CeEEEeeCc-------EEEEEECCCCC
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSS--RITTKHDFG-------YVAMDLSHVRA 571 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~-g~P~~~v~W~k~g~~l~~~~--~~~~~~~~~-------~~~L~I~~v~~ 571 (808)
++|.|+..+.+. .+.+|+.+.|.|.+ . |.|.+.|.|+|||..+.... ++.+..... ...|.|.+++.
T Consensus 1 e~~~~~~~p~~~-~v~~G~~v~l~C~~--~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 77 (195)
T 2c5d_C 1 EESPFVGNPGNI-TGARGLTGTLRCQL--QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQL 77 (195)
T ss_dssp -CCSEEECCCCE-EECTTCCEEEEEEE--EEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCS
T ss_pred CCCeeccChhhe-EEecCCcEEEeccc--ccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccc
Confidence 378899888887 68999999999999 6 89999999999999998763 344433221 45899999999
Q ss_pred CCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 572 EDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
+|+|.|+|.|.|..|..... +.|.|... |.|...+. ...+.+
T Consensus 78 ~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~------------------------------------p~~~~~~~-~~~~~~ 120 (195)
T 2c5d_C 78 SDTGQYQCLVFLGHQTFVSQPGYVGLEGL------------------------------------PYFLEEPE-DRTVAA 120 (195)
T ss_dssp TTCEEEEEEEEETTEEEECCCEEEEECCS------------------------------------CEEEECCC-CEEECT
T ss_pred cCCcEEEEEEEeCCCceecccEEEEEecC------------------------------------CeEEcCCC-cEEEcC
Confidence 99999999999998876544 77777653 54544333 256889
Q ss_pred CceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE-EEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV-SSTSLKV 728 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~s~~l~V 728 (808)
|+.+.|.|.+ .|.|.| .|.|++||..+...... ....+|.|.++. |+|.|+|.|.|.+|... .++.|.|
T Consensus 121 g~~~~l~C~~--~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 121 NTPFNLSCQA--QGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp TCCEEEEEEE--ECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEeEC--CCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 9999999999 799999 99999999999876543 334589999988 89999999999999996 6999998
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=207.48 Aligned_cols=177 Identities=27% Similarity=0.397 Sum_probs=148.5
Q ss_pred ecCCCCccccCC-CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 53 VTKPKSIENLRE-RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 53 ~~~p~~~~~v~~-G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
+..+..+ .+.+ |+.++|.|.+.+.+.|.+.|.|+|+|..+..+.+.. ....|.|.+++.+|+|.|+|.|.|.
T Consensus 6 i~~~~~~-~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~- 78 (190)
T 2wv3_A 6 IVTSEEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYHFV- 78 (190)
T ss_dssp EEECCCE-ECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred ccccceE-EEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEEeC-
Confidence 3345555 5667 999999999995322338999999999988664432 3458999999999999999999999
Q ss_pred cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecC
Q psy2145 132 GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVS 211 (808)
Q Consensus 132 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~ 211 (808)
|....++.|.|. .+|.+...+....+.+|+.+.|.|.+ .+
T Consensus 79 ~~~~~~~~l~V~--------------------------------------~~p~~~~~~~~~~~~~g~~v~l~C~~--~g 118 (190)
T 2wv3_A 79 SAPKANATIEVK--------------------------------------AAPDITGHKRSENKNEGQDAMMYCKS--VG 118 (190)
T ss_dssp TEEEEEEEEEEE--------------------------------------CCCEEEEECSEEEEETTSCEEEEEEE--EC
T ss_pred CcccccEEEEEe--------------------------------------cCCcccccCCcceeeCCCcEEEEEEe--Cc
Confidence 888888888884 46778888888889999999999999 58
Q ss_pred CCCeEEEEee--CCEEcc---CCCceEEEecCceEEEEEccCC-CCCcEEEEEEEEeCceeEEEEEEEEEe
Q psy2145 212 DNTMKVEWFH--NNVPIK---SGSRFTETNNFGFVALDIMQCL-PEDSGVYTCRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 212 ~p~~~v~W~~--~g~~l~---~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 276 (808)
.|.+.+.|++ +|..+. ...++.+..+++..+|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 119 ~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp SSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 8899999999 888775 5667777777777789999999 799999999999999999999988885
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=220.35 Aligned_cols=198 Identities=23% Similarity=0.444 Sum_probs=151.6
Q ss_pred cCCCeeeecCC---CcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe---EEEeeCcEEEEEECCCCCCCC
Q psy2145 501 KQRPVFTKPLQ---NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI---TTKHDFGYVAMDLSHVRAEDE 574 (808)
Q Consensus 501 ~~~P~f~~~~~---~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~L~I~~v~~~D~ 574 (808)
..+|.|+.+.. ....+.+|+++.|.|.+ .|.|.+.|.|+|+|..+....++ .... +..+|.|.+++.+|+
T Consensus 9 ~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~ 84 (241)
T 3grw_A 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPA--AGNPTPSISWLKNGREFRGEHRIGGIKLRH--QQWSLVMESVVPSDR 84 (241)
T ss_dssp --CCEESSGGGGSCCEEEEETTSEEEEECCE--ECSSCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGGC
T ss_pred CCCceeEcCCCCCCcceEEcCCCeEEEEEEe--cCCCCceeEEEECCcccCCCCcccceeeec--cceEEEEEeCCcccC
Confidence 34788876652 23368899999999999 78999999999999998765432 3332 233799999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
|.|+|.|.|..|....++.|.|...+. .+|.+.........+.+|+.+
T Consensus 85 G~Y~C~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~~~~~~~~~~~~~~g~~v 132 (241)
T 3grw_A 85 GNYTCVVENKFGSIRQTYTLDVLERSP--------------------------------HRPILQAGLPANQTAVLGSDV 132 (241)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECCCC--------------------------------CCCEEEECTTCSEECCTTCCE
T ss_pred EEEEEEEeecCCceEEEEEEEEeccCC--------------------------------CCceeecCCCccceecCCCEE
Confidence 999999999999999999999876432 135555555555678899999
Q ss_pred EEEEEEeeCCCCCeEEEEEE----CCEEccCCCcEEEEE--------eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 655 HYDCRVVPVGDPTMRFEWFV----NGVELKMGSRFHVQH--------DFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~----~g~~l~~~~~~~~~~--------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
.|.|.+ .|.|.+.|.|++ ||..+..+....... .....+|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 133 ~L~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~ 210 (241)
T 3grw_A 133 EFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210 (241)
T ss_dssp EEEEEE--ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred EEEEEE--ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEE
Confidence 999999 799999999999 999887654432211 013468999999999999999999999999999
Q ss_pred EEEEEEEeCCCccc
Q psy2145 723 STSLKVKSKSDIVS 736 (808)
Q Consensus 723 s~~l~V~~~p~~~~ 736 (808)
++.|.|..+|.+..
T Consensus 211 ~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 211 AFWLSVHGPRAAEE 224 (241)
T ss_dssp EEEEEC--------
T ss_pred EEEEEecCCCCCCc
Confidence 99999998876544
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=212.60 Aligned_cols=182 Identities=20% Similarity=0.454 Sum_probs=142.4
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC--CCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED--SSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
+|.|...+.+. .+.+|+.+.|.|.+ .+.|.+.+.|+|++..+.. ..++....++ .|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~~~~~~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~ 75 (189)
T 2v5t_A 2 MLTFREVVSPQ-EFKQGEDAEVVCRV--SSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCE 75 (189)
T ss_dssp CCEEEECCSSE-EEETTSCEEECCEE--ECSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEE
T ss_pred CceeeccCCCE-EEeCCCcEEEEEEE--cCCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEE
Confidence 57888888877 68999999999999 7889999999999988764 3455444332 699999999999999999
Q ss_pred EEeCCeeEE--EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCC-CccccCCceEEEE
Q psy2145 581 ATNALGEAV--TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTG-TSEIMEGQSAHYD 657 (808)
Q Consensus 581 a~N~~G~~~--~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~-~~~v~~G~~v~l~ 657 (808)
|.|..+... ..+.|.|...|.+ ...... ...+.+|+.+.|.
T Consensus 76 ~~~~~~~~~~~~~~~l~v~~~p~~------------------------------------~~~~~~~~~~~~~g~~v~l~ 119 (189)
T 2v5t_A 76 GRVEARGEIDFRDIIVIVNVPPAI------------------------------------SMPQKSFNATAERGEEMTFS 119 (189)
T ss_dssp EEETTTTEEEEEEEEEEEEEEEEE------------------------------------ECSCCEEEEETTSCCCEEEE
T ss_pred EEEcCCCceEEEEEEEEecCCCCc------------------------------------ccccccccccccCCCcEEEE
Confidence 999875443 4455666554332 111110 2357789999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 658 CRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 658 C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|.+ .|.|.|.|.|++||..+..+.++.+..++ .+|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 120 C~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 120 CRA--SGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp CEE--EEESCCEEEEEETTEECCCSSSEEEETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEE--ccCCCCeEEEEECCEECcCCCcEEEecCC--CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 999 78999999999999999988887765443 3899999999999999999999999999999999864
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=217.22 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=135.3
Q ss_pred CccccCCCCcEEEEEEEee-CCCCCceEEEEeCCEEee-----------------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 58 SIENLRERGHAHFECKLEP-VTDSNLKVEWFKNGRPVT-----------------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 58 ~~~~v~~G~~v~l~C~~~~-~~~p~~~v~W~~~g~~l~-----------------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
++ ++..|+.++|.|.+.. .+.|.+.|.|||+|..+. ...++.+..+.+..+|.|.+++.+|
T Consensus 2 ~V-ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 80 (203)
T 4fa8_A 2 AV-TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 80 (203)
T ss_dssp CC-EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred Ce-EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence 44 7889999999997542 256889999999874321 1235566667788899999999999
Q ss_pred CeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 120 SGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 120 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
+|.|+|+|.|..|.....+.|.|. .||.+...+....+.+|+
T Consensus 81 ~G~Y~C~a~n~~g~~~~~~~l~V~--------------------------------------~p~~~~~~~~~~~v~~g~ 122 (203)
T 4fa8_A 81 DGNYLCRMKLGETEVTKQEHLSVV--------------------------------------KPLTLSVHSERSQFPDFS 122 (203)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEE--------------------------------------EEEEEEEEEEECCSSCSC
T ss_pred CeEEEEEEEcCCCcEEEEEEEEec--------------------------------------CCceeeecceeEEEcCCC
Confidence 999999999999999999999884 367777788888899999
Q ss_pred eEEEEEEEeecCCCCeEEEEeeCCEEcc----CCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE
Q psy2145 200 RAHFECRLIPVSDNTMKVEWFHNNVPIK----SGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT 269 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~~~v~W~~~g~~l~----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 269 (808)
+++|.|.+ .|.|.|.|+|++++..+. .+.++.+..++....|.|.++..+|+|.|+|.|+|..|.+..
T Consensus 123 ~~~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 123 VLTVTCTV--NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CEEEEEEE--EEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred EEEEEEEc--CCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 99999999 578999999998765442 345666666665566788899999999999999999998764
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=219.28 Aligned_cols=199 Identities=24% Similarity=0.424 Sum_probs=153.7
Q ss_pred ccCCCeeeecCC---CcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe---EEEeeCcEEEEEECCCCCCC
Q psy2145 500 TKQRPVFTKPLQ---NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI---TTKHDFGYVAMDLSHVRAED 573 (808)
Q Consensus 500 ~~~~P~f~~~~~---~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~L~I~~v~~~D 573 (808)
...+|.|..++. ....+.+|+++.|.|.+ .|.|.+.|.|+|+|..+....++ .... +...|.|.+++.+|
T Consensus 12 ~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d 87 (231)
T 3ojm_B 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRN--QHWSLIMESVVPSD 87 (231)
T ss_dssp -CEEEEESCGGGGCCSCEEEETTSCEEEECCE--EEESCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGG
T ss_pred CccCCccccccccCceeEEEccCCCEEEEEec--ccCCCCeEEEEECCccccccccccceeeec--CcceEEEecCCccc
Confidence 445788877662 23368999999999999 78899999999999998765443 2322 23379999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 653 (808)
+|.|+|.|.|..|....++.|.|...+.. +|.+.........+.+|+.
T Consensus 88 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~--------------------------------~p~~~~~~~~~~~~~~g~~ 135 (231)
T 3ojm_B 88 KGNYTCVVENEYGSINHTYHLDVVERSRH--------------------------------RPILQAGLPANASTVVGGD 135 (231)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEECCCCC--------------------------------CCEECTTCSCCEEEETTCC
T ss_pred CEEEEEEEecccCcccccEEEEEEcCCCC--------------------------------CCceeeccCCceEEEeCCc
Confidence 99999999999999999999999864321 2444333334456889999
Q ss_pred EEEEEEEeeCCCCCeEEEEEE----CCEEccCCCcEE--EEEeC-----CEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFV----NGVELKMGSRFH--VQHDF-----GYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~----~g~~l~~~~~~~--~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
+.|.|.+ .|.|.|.|.|++ ||..+..+.... ..... ...+|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 136 ~~l~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 213 (231)
T 3ojm_B 136 VEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213 (231)
T ss_dssp EEEECCE--ECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEEEE--ecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEee
Confidence 9999999 799999999999 898886554322 12111 1247999999999999999999999999999
Q ss_pred EEEEEEEeCCCccc
Q psy2145 723 STSLKVKSKSDIVS 736 (808)
Q Consensus 723 s~~l~V~~~p~~~~ 736 (808)
++.|.|..+|..+.
T Consensus 214 ~~~l~V~~~p~~p~ 227 (231)
T 3ojm_B 214 SAWLTVLPKQQAPG 227 (231)
T ss_dssp EEEEEEECCC----
T ss_pred EEEEEEecCCCCCc
Confidence 99999998876543
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=208.41 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=151.2
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEE
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 141 (808)
..+|+.+.|.|.+.+ ..|.+.|.|+|+|..|..+.++.+..+++..+|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 14 ~c~~~~~~l~C~~~~-~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~ 92 (212)
T 2r15_A 14 QSTAEGIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92 (212)
T ss_dssp EECSSEEEEEEEBSS-CCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred EEcCceEEEEEEEec-cCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence 457788888888875 2568899999999999999999988888888999999999999999999999888777666665
Q ss_pred EecCCCccccccccccceeeeeecccccccccccc-ccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEe
Q psy2145 142 CRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI-EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF 220 (808)
Q Consensus 142 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~ 220 (808)
|......... ....... ......|+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+
T Consensus 93 v~~~~~~~~~------------------~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~--~g~p~p~v~W~ 152 (212)
T 2r15_A 93 GQAYDEAYAE------------------FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWL 152 (212)
T ss_dssp HHHHHHHHHH------------------HHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE--ECSSCCEEEEE
T ss_pred Eeeccchhhh------------------ccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE--cCCCCceEEEE
Confidence 5321000000 0000000 0000134444445666889999999999999 58899999999
Q ss_pred eCCEEccCCCceEEEec-CceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 221 HNNVPIKSGSRFTETNN-FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 221 ~~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
|+|..+..+.++.+... ++..+|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 153 KNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp ETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 99999998888777665 5677999999999999999999999999999999998864
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=204.49 Aligned_cols=182 Identities=24% Similarity=0.389 Sum_probs=144.2
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEE-CCEecC-CCCCeEEEe-eCcEEEEEECCCCCCCCEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFR-NEKPLE-DSSRITTKH-DFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k-~g~~l~-~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
|+.|...+.+. .+.+|+.+.|.|.+ .+.| .+.+.|+| ||..+. ...++.... +.+...|.|.+++.+|+|.|+
T Consensus 2 p~~v~~~p~~~-~v~~G~~v~l~C~~--~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (191)
T 1epf_A 2 VLQVDIVPSQG-EISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78 (191)
T ss_dssp -CCEEEESSSE-EEETTCCEEEEEEE--CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred ceEEEecCCCc-EEcCCCCEEEEEEC--CCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEE
Confidence 45666666666 68999999999999 6766 89999999 998887 445665543 355668999999999999999
Q ss_pred EEEEeCC-eeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 579 CKATNAL-GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 579 C~a~N~~-G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
|.|.|.. +.....+.|.|... |.+...+. ...+.+|+.+.|.
T Consensus 79 C~~~~~~~~~~~~~~~l~v~~~------------------------------------p~~~~~~~-~~~~~~g~~~~l~ 121 (191)
T 1epf_A 79 CVVTAEDGTQSEATVNVKIFQK------------------------------------LMFKNAPT-PQEFKEGEDAVIV 121 (191)
T ss_dssp EEEEETTTEEEEEEEEEEEECC------------------------------------SEEEECCS-SEECCTTSCEEEC
T ss_pred EEEEcCCCcceEEEEEEEeecC------------------------------------ceEecCCC-cEeecCCCeEEEE
Confidence 9999998 66667777777653 44443332 3568899999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccC--CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 658 CRVVPVGDPTMRFEWFVNGVELKM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 658 C~v~~~g~P~p~i~W~~~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|.+ .|.|.|.|.|+++|..+.. +.++.+..+ + .|.|.++..+|+|.|+|.|.|.+|.......+.|.
T Consensus 122 C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 122 CDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp CEE--ECSSCCEEEEEETTEEGGGGCCTTEEECTT-S--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred EEE--CCCCCCEEEEEECCEEeeccCCceEEEecC-C--eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 999 6999999999999999874 335544332 2 69999999999999999999999877777777664
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=206.49 Aligned_cols=176 Identities=16% Similarity=0.318 Sum_probs=139.7
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCc--EEEEEECCCCCCCCEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG--YVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~ 580 (808)
+|.|...+.+. .+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+....+.....+.. ...|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~~~~p~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 78 (182)
T 1rhf_A 2 GLKLMGAPVKL-TVSQGQPVKLNCSV--EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ 78 (182)
T ss_dssp -----CCCEEE-EEETTCCEEEEEEE--ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CCEEEeCCcce-EEeCCCcEEEEEEE--eCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEE
Confidence 46677777665 68999999999999 689999999999999998876665554432 35899999999999999999
Q ss_pred EEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 581 ATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 581 a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
|.|..|. .+..+.|.|... |.+...+. ...+.+|+.+.|.|.
T Consensus 79 ~~~~~~~~~~~~~~l~V~~~------------------------------------p~~~~~~~-~~~~~~g~~~~l~C~ 121 (182)
T 1rhf_A 79 VEDGGETEISQPVWLTVEGV------------------------------------PFFTVEPK-DLAVPPNAPFQLSCE 121 (182)
T ss_dssp ESSCTTCEECCCEEEEEECS------------------------------------CEEEECCC-CEEECTTCCEEEEEE
T ss_pred EEcCCCcEEEEEEEEEEecC------------------------------------CeEEecCc-ceEecCCCEEEEEeE
Confidence 9999775 445688888754 44444433 256889999999999
Q ss_pred EeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEEE
Q psy2145 660 VVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVK 729 (808)
Q Consensus 660 v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~ 729 (808)
+ .|.|.| .|.|+++|..+..... ....|.|.++ +|+|.|+|.|.|.+|...+ ++.|.|+
T Consensus 122 ~--~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 122 A--VGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp E--ECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred e--cCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 9 799999 9999999999865422 3458999998 5999999999999999864 8888774
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=203.33 Aligned_cols=178 Identities=19% Similarity=0.302 Sum_probs=146.6
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC--ceEEEecCc-------eEEEEEccCCCCCc
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTETNNFG-------FVALDIMQCLPEDS 253 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~~~-------~~~L~I~~~~~~D~ 253 (808)
+|.|...+.++.+.+|++++|.|.+. .+.|.+.|.|+|||..+.... ++.+..... ..+|.|.+++.+|+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~-~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQ-VQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEE-EESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCeeccChhheEEecCCcEEEecccc-cCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 68899999999999999999999994 167888999999999998763 344333221 45899999999999
Q ss_pred EEEEEEEEeCceeEEEE-EEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCe
Q psy2145 254 GVYTCRAVNALGQAVTS-GNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQA 332 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~-~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~ 332 (808)
|.|+|.|.|..|...+. +.|.|.. +|.+...+....+.+|+.
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~~-------------------------------------~p~~~~~~~~~~~~~g~~ 123 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLEG-------------------------------------LPYFLEEPEDRTVAANTP 123 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECC-------------------------------------SCEEEECCCCEEECTTCC
T ss_pred cEEEEEEEeCCCceecccEEEEEec-------------------------------------CCeEEcCCCcEEEcCCCE
Confidence 99999999988876544 7777754 566766667788899999
Q ss_pred EEEEEEEeecCCCcc-EEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEEE
Q psy2145 333 AHFEARLIPVGDSKL-KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV-TSSTLFV 407 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V 407 (808)
+.|.|.+ .|.|.+ .|.|+++|..+...... ....+|.|.++. |+|.|+|.|.|..|... ..+.|.|
T Consensus 124 ~~l~C~~--~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 124 FNLSCQA--QGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEEEEE--ECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEeEC--CCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 9999999 789999 99999999998766542 223479999987 89999999999999886 5788888
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=208.08 Aligned_cols=184 Identities=28% Similarity=0.481 Sum_probs=153.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-CCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+.++.+.+|++++|.|.+ .+.|.+.+.|+++|..+.. ..++.+..++. +|.|.+++.+|+|.|+|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~--~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~ 80 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAV--ESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCT 80 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCE--EEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEE
T ss_pred CCCceeecCccceeeeCCCcEEEEeeC--CCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEE
Confidence 557888888888999999999999999 4677889999999999865 45666555444 799999999999999999
Q ss_pred EEeCcee-EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 260 AVNALGQ-AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 260 a~n~~g~-~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
+.|..|. ......|.|.. +|.+...+....+.+|+.+.|.|.
T Consensus 81 ~~~~~~~~~~~~~~l~v~~-------------------------------------~p~~~~~~~~~~~~~g~~~~l~C~ 123 (192)
T 2iep_A 81 ANNGVGGAVESCGALQVKM-------------------------------------KPKITRPPINVKIIEGLKAVLPCT 123 (192)
T ss_dssp EECSSSCCEEEEEEEEEEE-------------------------------------EEEEEECCCCEEEETTSCEEECCE
T ss_pred EEcCCCceeEeEEEEEEEe-------------------------------------CCccccCCcceEEeCCCcEEEEEE
Confidence 9998887 45567777765 445555566778899999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEE-EEEEEEEec
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVT-SSTLFVESK 410 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~ 410 (808)
+ .|.|.+.+.|+++|..+..+.++....++ +|.|.++..+|+|.|+|.|.|..|...+ .+.|.|..+
T Consensus 124 ~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~p 191 (192)
T 2iep_A 124 T--MGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191 (192)
T ss_dssp E--EEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred E--eccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeC
Confidence 8 78899999999999999888777665543 6999999999999999999999998854 588888754
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=213.23 Aligned_cols=195 Identities=25% Similarity=0.403 Sum_probs=142.6
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC----eEEE-eeCcEE--EEEECCCCCCCC
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR----ITTK-HDFGYV--AMDLSHVRAEDE 574 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~----~~~~-~~~~~~--~L~I~~v~~~D~ 574 (808)
.||.|...+.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+..... .... ..+... .|.|.+++.+|+
T Consensus 8 ~pp~i~~~p~~~-~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 84 (212)
T 2v9r_A 8 FPPRIVEHPSDL-IVSKGEPATLNCKA--EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84 (212)
T ss_dssp EEEEEEECCCCE-EECTTCCEEECCEE--EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred CCcceecCCCce-EEeCCCcEEEEEEc--CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence 478898888776 68999999999999 7889999999999998875431 1222 222221 245577899999
Q ss_pred EEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce
Q psy2145 575 GIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653 (808)
Q Consensus 575 G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 653 (808)
|.|+|.|.|..|.. ...+.|.|...+. .+...+ ....+.+|+.
T Consensus 85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~-----------------------------------~~~~~~-~~~~~~~g~~ 128 (212)
T 2v9r_A 85 GVYVCVARNYLGEAVSHDASLEVAILRD-----------------------------------DFRQNP-SDVMVAVGEP 128 (212)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECEECS-----------------------------------SCSBCC-CCEEEETTSC
T ss_pred eEEEEEEECCCCceeecceEEEEEeccc-----------------------------------cceeCC-CceEecCCCc
Confidence 99999999999876 4467777765322 111111 1245788999
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE-EEEEEEeCC
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS-TSLKVKSKS 732 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s-~~l~V~~~p 732 (808)
+.|.|.+. .|.|.+.|.|++||..+..+.+..... ++ .|.|.++..+|+|.|+|.|.|.+|...+. +.|.|..+|
T Consensus 129 ~~l~C~~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P 204 (212)
T 2v9r_A 129 AVMECQPP-RGHPEPTISWKKDGSPLDDKDERITIR-GG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204 (212)
T ss_dssp EEEECBCC-CEESCCEEEEEETTEEECTTSTTEEEE-TT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEEecC-CCCCCCEEEEEECCccCCCCcceEEcc-CC--eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence 99999873 588999999999999998754433332 33 79999999999999999999999997764 899999999
Q ss_pred CccccCC
Q psy2145 733 DIVSESL 739 (808)
Q Consensus 733 ~~~~~~~ 739 (808)
.+...++
T Consensus 205 ~~~~~P~ 211 (212)
T 2v9r_A 205 SFVKAAA 211 (212)
T ss_dssp -------
T ss_pred hHhhhcc
Confidence 8775543
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=213.58 Aligned_cols=189 Identities=26% Similarity=0.446 Sum_probs=144.4
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC--CeEEEeeCcE--EEEEECCCCCCCCE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGY--VAMDLSHVRAEDEG 575 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~--~~~~~~~~~~--~~L~I~~v~~~D~G 575 (808)
...+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+.... .......++. ..|.|.+++.+|+|
T Consensus 6 ~~~~P~i~~~p~~~-~v~~G~~v~L~C~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G 82 (217)
T 2vr9_A 6 QYQSPRIIEHPTDL-VVKKNEPATLNCKV--EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGG 82 (217)
T ss_dssp CCCCCEEEECCCCE-EECTTSCEEECCEE--ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCE
T ss_pred ccCCCEEecCCCce-EEeCCCcEEEEEEc--CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCc
Confidence 35689999988876 68999999999999 789999999999999987642 2222222332 23478999999999
Q ss_pred EEEEEEEeCCeeEE-EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 576 IYICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 576 ~Y~C~a~N~~G~~~-~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
.|+|.|.|..|... ..+.|.|...+ |.+...+. ...+.+|+.+
T Consensus 83 ~Y~C~~~n~~g~~~~~~~~l~v~~~~-----------------------------------~~~~~~~~-~~~~~~g~~v 126 (217)
T 2vr9_A 83 EYWCVAKNRVGQAVSRHASLQIAVLR-----------------------------------DDFRVEPK-DTRVAKGETA 126 (217)
T ss_dssp EEEEEEEETTEEEECCCEEEEECEEC-----------------------------------CSCSBCCC-CEEECTTSCE
T ss_pred eEEEEEecCCCccccccceEEEEEeC-----------------------------------CCcEECCC-ccEEcCCCeE
Confidence 99999999999764 35677766532 22222211 2457889999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccC--------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 655 HYDCRVVPVGDPTMRFEWFVNGVELKM--------GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~~g~~l~~--------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.|.|.+. .|.|.|.|.|+++|..+.. ..++.+.. .+ +|.|.++..+|+|.|+|.|+|.+|....++.+
T Consensus 127 ~l~C~~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~ 202 (217)
T 2vr9_A 127 LLECGPP-KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD-GG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202 (217)
T ss_dssp EECCBCC-CEESCCEEEEEETTEEECCCCCC---CCCSEEEET-TT--EEEESSCCSTTCEEEEEEEEETTEEEECCCEE
T ss_pred EEEEECC-CCCCCCeEEEEECCcCCCcccccccccCCcEEecC-CC--cEEEeeCCHHHCeEEEEEEEcccceeccccEE
Confidence 9999873 5899999999999999984 34444332 22 79999999999999999999999999988777
Q ss_pred EEEeC
Q psy2145 727 KVKSK 731 (808)
Q Consensus 727 ~V~~~ 731 (808)
.|...
T Consensus 203 lv~~~ 207 (217)
T 2vr9_A 203 LIVQV 207 (217)
T ss_dssp EEEC-
T ss_pred EEEEe
Confidence 66544
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=198.24 Aligned_cols=173 Identities=16% Similarity=0.279 Sum_probs=141.4
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCC--eEEEEEcccCcCCCeeEEEEEE
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG--YVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
.++..|.++ .+.+|++++|.|.+. +.|.+.+.|+|+|..+....++.+..+.. ..+|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~~~p~~~-~v~~G~~v~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 4 KLMGAPVKL-TVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp ---CCCEEE-EEETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred EEEeCCcce-EEeCCCcEEEEEEEe--CCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 455667777 899999999999999 57888999999999998877766555442 4689999999999999999999
Q ss_pred ecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEE
Q psy2145 129 NLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL 207 (808)
Q Consensus 129 n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~ 207 (808)
|..|.. ...+.|.|. .+|.|...+....+.+|+.+.|.|.+
T Consensus 81 ~~~~~~~~~~~~l~V~--------------------------------------~~p~~~~~~~~~~~~~g~~~~l~C~~ 122 (182)
T 1rhf_A 81 DGGETEISQPVWLTVE--------------------------------------GVPFFTVEPKDLAVPPNAPFQLSCEA 122 (182)
T ss_dssp SCTTCEECCCEEEEEE--------------------------------------CSCEEEECCCCEEECTTCCEEEEEEE
T ss_pred cCCCcEEEEEEEEEEe--------------------------------------cCCeEEecCcceEecCCCEEEEEeEe
Confidence 986653 456777773 46788888888899999999999999
Q ss_pred eecCCCCe-EEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE-EEEEEE
Q psy2145 208 IPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLV 275 (808)
Q Consensus 208 ~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V 275 (808)
.+.|.+ .+.|+++|..+..... ....|.|.++ +|+|.|+|.|.|..|...+ ++.|.|
T Consensus 123 --~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 123 --VGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp --ECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred --cCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 578888 9999999999865422 2238999998 5999999999999998864 777776
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=200.09 Aligned_cols=180 Identities=20% Similarity=0.365 Sum_probs=139.3
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec--cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI--GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~--~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
+.++..|.+. .+.+|+.++|.|.+. +.|.+.+.|++++..+.. +.++....++ +|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~~~~~~~-~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~ 76 (189)
T 2v5t_A 3 LTFREVVSPQ-EFKQGEDAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEG 76 (189)
T ss_dssp CEEEECCSSE-EEETTSCEEECCEEE--CSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEEE
T ss_pred ceeeccCCCE-EEeCCCcEEEEEEEc--CCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEEE
Confidence 4456777777 899999999999998 468889999999988864 4555544333 6999999999999999999
Q ss_pred EecCcceEE--EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecC--ceeecCCCeEEE
Q psy2145 128 VNLVGFAEV--QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK--NCEIKEGQRAHF 203 (808)
Q Consensus 128 ~n~~g~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~--~~~v~~G~~v~L 203 (808)
.|..+.... ...|.|. .+|.+...+. ...+.+|+.+.|
T Consensus 77 ~~~~~~~~~~~~~~l~v~--------------------------------------~~p~~~~~~~~~~~~~~~g~~v~l 118 (189)
T 2v5t_A 77 RVEARGEIDFRDIIVIVN--------------------------------------VPPAISMPQKSFNATAERGEEMTF 118 (189)
T ss_dssp EETTTTEEEEEEEEEEEE--------------------------------------EEEEEECSCCEEEEETTSCCCEEE
T ss_pred EEcCCCceEEEEEEEEec--------------------------------------CCCCcccccccccccccCCCcEEE
Confidence 998765443 3444443 2344443333 456789999999
Q ss_pred EEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 204 ECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 204 ~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
.|.+ .+.|.+.+.|+++|..+....++......+ +|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 119 ~C~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 119 SCRA--SGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp ECEE--EEESCCEEEEEETTEECCCSSSEEEETTTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEE--ccCCCCeEEEEECCEECcCCCcEEEecCCC--EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 9999 467888999999999998888777665544 799999999999999999999999999998888853
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=196.22 Aligned_cols=182 Identities=18% Similarity=0.280 Sum_probs=146.7
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEee-CCEEcc-CCCceEEEe-cCceEEEEEccCCCCCcEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH-NNVPIK-SGSRFTETN-NFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~-~g~~l~-~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
++.|...+.+..+.+|++++|.|.+ .+.+ .+.+.|++ +|..+. ...++.... +.+..+|.|.+++.+|+|.|+|
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~--~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEE--CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEEC--CCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence 5778889999999999999999999 4555 78999999 998887 445555443 2455689999999999999999
Q ss_pred EEEeCc-eeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEE
Q psy2145 259 RAVNAL-GQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEA 337 (808)
Q Consensus 259 ~a~n~~-g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C 337 (808)
.|.|.. +.....+.|.|.. +|.+...+....+.+|+.+.|.|
T Consensus 80 ~~~~~~~~~~~~~~~l~v~~-------------------------------------~p~~~~~~~~~~~~~g~~~~l~C 122 (191)
T 1epf_A 80 VVTAEDGTQSEATVNVKIFQ-------------------------------------KLMFKNAPTPQEFKEGEDAVIVC 122 (191)
T ss_dssp EEEETTTEEEEEEEEEEEEC-------------------------------------CSEEEECCSSEECCTTSCEEECC
T ss_pred EEEcCCCcceEEEEEEEeec-------------------------------------CceEecCCCcEeecCCCeEEEEE
Confidence 999987 5556667777754 56666666777889999999999
Q ss_pred EEeecCCCccEEEEEECCEeccCC--CcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 338 RLIPVGDSKLKVTWLRNGVPIQAS--NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 338 ~~~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
.+ .|.|.+.+.|+++|..+... .++....+ + .|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 123 ~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 123 DV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp EE--ECSSCCEEEEEETTEEGGGGCCTTEEECTT-S--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred EE--CCCCCCEEEEEECCEEeeccCCceEEEecC-C--eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 99 79999999999999998643 35554443 3 69999999999999999999999776666656553
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=204.57 Aligned_cols=189 Identities=17% Similarity=0.355 Sum_probs=144.7
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
...+.|...+.+. .+.+|+.+.|.|.+ .+.|.+.|.|+|+|..+..+.. + .|.|.+++.+|+|.|+|.
T Consensus 16 ~~~~~i~~~p~~~-~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~-------~--~L~i~~v~~~d~G~Y~C~ 83 (218)
T 3k0w_A 16 PRGSKITVNPESK-AVLAGQFVKLCCRA--TGHPFVQYQWFKMNKEIPNGNT-------S--ELIFNAVHVKDAGFYVCR 83 (218)
T ss_dssp ---CCEEECCCCE-EEETTSBEEEECEE--TTTTSSEEEEEETTEECTTCCS-------S--EEEETTCCGGGCEEEEEE
T ss_pred CCCCEEEECCCCe-EEeCCCcEEEEeee--cCCCCCEEEEEECCEECCCCCC-------C--EEEEccCChhhCeEeEEE
Confidence 3467788887776 68999999999999 8999999999999999876532 2 799999999999999999
Q ss_pred EEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 581 ATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 581 a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
|.|..|.. +..+.|.|...+...... .......+|.+...+. ...+.+|+.+.|.|.
T Consensus 84 ~~n~~~~~~s~~~~l~V~~~~~~~~~~---------------------~~~~~~~~p~~~~~~~-~~~v~~G~~v~L~C~ 141 (218)
T 3k0w_A 84 VNNNFTFEFSQWSQLDVCDIPESFQRS---------------------VDGVSESKLQICVEPT-SQKLMPGSTLVLQCV 141 (218)
T ss_dssp EECTTCCEECCCEEEEEECCCGGGCTT---------------------CCSBCCSSCEEEECCC-CEEECTTCCEEEECE
T ss_pred EEcCCCCceeeEEEEEEEccCcccccc---------------------cccccCCCceEEECCC-ceeecCCCcEEEEEE
Confidence 99998865 455788887654321000 0000112355555443 357889999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc-eEEEEEEEEEeCCCc
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE-AVSSTSLKVKSKSDI 734 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~s~~l~V~~~p~~ 734 (808)
+ .|.|.+.|.|++||..+..+.+ .+|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+.+
T Consensus 142 ~--~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~ 206 (218)
T 3k0w_A 142 A--VGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 206 (218)
T ss_dssp E--EBSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred e--cccCCCeEEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence 9 7999999999999999986543 27999999999999999999999998 556788888765444
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=206.61 Aligned_cols=181 Identities=20% Similarity=0.358 Sum_probs=135.8
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEec------------CCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL------------EDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l------------~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
+.|..++.+. .+.+|+.+.|.|.+ .+.|.+.|.|+|++..+ ....++.... + .|.|.+++.
T Consensus 2 ~~v~~~~~~~-~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~--~L~i~~v~~ 74 (212)
T 1f97_A 2 GSVYTAQSDV-QVPENESIKLTCTY--SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--S--GITFSSVTR 74 (212)
T ss_dssp CEEECSCSEE-EEETTCCEEEECEE--ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET--T--EEEESCCCG
T ss_pred ceEEecCCCe-EEEcCCCEEEEeEe--CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec--e--eEEEcccCc
Confidence 3455555555 68999999999999 68899999999988652 2245555443 2 799999999
Q ss_pred CCCEEEEEEEEeCCe--eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 572 EDEGIYICKATNALG--EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G--~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
+|+|.|+|.|.|..| ....++.|.|...|.+ ..... ...+.
T Consensus 75 ~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~------------------------------------~~~~~-~~~~~ 117 (212)
T 1f97_A 75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK------------------------------------PTISV-PSSVT 117 (212)
T ss_dssp GGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCC------------------------------------CEEEC-CSEEE
T ss_pred ccCeEEEEEEEccCCCcccEEEEEEEEEcCCCC------------------------------------cccCC-ccccC
Confidence 999999999999977 6667788888765432 11111 24578
Q ss_pred CCceEEEEEE-EeeCCCCCeEEEEEECCE-EccCCCcE-------EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 650 EGQSAHYDCR-VVPVGDPTMRFEWFVNGV-ELKMGSRF-------HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 650 ~G~~v~l~C~-v~~~g~P~p~i~W~~~g~-~l~~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+|+.+.|.|. + .|.|.|.|.|+++|. .+..+.+. .+........|.|.++..+|+|.|+|.|.|.+|..
T Consensus 118 ~g~~~~l~C~~~--~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 195 (212)
T 1f97_A 118 IGNRAVLTCSEH--DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195 (212)
T ss_dssp TTSCEEEEEECS--CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred CCCeEEEEEEcc--cCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence 8999999999 5 799999999999999 88764431 12222334589999999999999999999999998
Q ss_pred EE--EEEEEEEe
Q psy2145 721 VS--STSLKVKS 730 (808)
Q Consensus 721 ~~--s~~l~V~~ 730 (808)
.. .+.|.|..
T Consensus 196 ~~s~~~~l~V~~ 207 (212)
T 1f97_A 196 MRSEAAHMDAVE 207 (212)
T ss_dssp EECCCEEEEEES
T ss_pred cccceEEEEEEE
Confidence 44 55566653
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=205.46 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=127.0
Q ss_pred cccCC--CceEEEEEEeeCCCCCcEEEEEE---CCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEE
Q psy2145 515 AVEEG--KNAHFSCRLIPVGDPTLKVEWFR---NEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAV 589 (808)
Q Consensus 515 ~v~~G--~~v~l~C~v~~~g~P~~~v~W~k---~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 589 (808)
.+.+| +.+.|.|.+ .+ |.+.++|++ ||..+..+.++...... .|.|.+++.+|+|.|+|.|.|..+...
T Consensus 18 ~v~eG~~~~v~L~C~~--~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 18 YITENKNKTVVIPCLG--SI-SNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp EECCSTTCEEEECCCB--SS-TTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred EEecCCCccEEEeecc--CC-CCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECCeeEE
Confidence 68899 999999998 55 779999988 47777766555443332 599999999999999999999644433
Q ss_pred EE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC--
Q psy2145 590 TT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-- 666 (808)
Q Consensus 590 ~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-- 666 (808)
+. +.|.|... .+|.+.........+.+|+.++|.|.+ .|.|
T Consensus 92 s~~~~l~v~~~----------------------------------~~p~~~~~~~~~~~v~~G~~v~L~C~~--~g~p~~ 135 (213)
T 2x1w_L 92 SIMYIVVVVGY----------------------------------RIYDVVLSPSHGIELSVGEKLVLNCTA--RTELNV 135 (213)
T ss_dssp CCCEEEEECBC----------------------------------CEEEEEEESCSCEEEETTCCEEEEEEE--EECTTB
T ss_pred EEEEEEEEeCC----------------------------------cccceEEcCCCCeEEcCCCCEEEEEEE--ECCCCC
Confidence 22 55555321 124444444444478999999999999 5654
Q ss_pred CeEEEEEECCEEccCCCc-EEEEE-------eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCc
Q psy2145 667 TMRFEWFVNGVELKMGSR-FHVQH-------DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 667 ~p~i~W~~~g~~l~~~~~-~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
.+.|.|+++|..+..... ..... ....++|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.|
T Consensus 136 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 136 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp CCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred ceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence 468999999987543211 10000 112458999999999999999999999999999999999988754
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=205.01 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=140.4
Q ss_pred CeeeecCCCcccccCCCceEEEEE-EeeCCCCC-cEEEEEECCEecCC--CCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCR-LIPVGDPT-LKVEWFRNEKPLED--SSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~-v~~~g~P~-~~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
|.|.........+.+|+.+.|.|. + .+.|. +.+.|+|++..+.. ..+......++ .|.|.+++.+|+|.|+|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~--~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C 83 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPP--YHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSC 83 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCC--SEESSCCEEEEEESSTTCBCCCSSSEEECTTTC--CEEESSCCGGGCEEEEE
T ss_pred CccCcCCCceEEEECCCCEEEecccc--ccCCCceEEEEEECCceeeeeeCCCeEEEcCCC--eEEECcCCcccCeEEEE
Confidence 344443333337899999999999 6 78898 99999999988752 33333333333 69999999999999999
Q ss_pred EEEeCCeeEEEE---EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEE
Q psy2145 580 KATNALGEAVTT---ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656 (808)
Q Consensus 580 ~a~N~~G~~~~s---~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l 656 (808)
.|.|..+..... ..+.+..... ....+|.+..... ...+.+|+.+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~p~~~~~~~-~~~~~~g~~~~l 133 (201)
T 3s97_C 84 FVSSPSITKSVFSKFIPLIPIPERT-----------------------------TKPYPADIVVQFK-DVYALMGQNVTL 133 (201)
T ss_dssp EEEEGGGTEEEECCCEEEEEECCSS-----------------------------CCCEEEEEEEECC-CEEEETTCCEEE
T ss_pred EEEecCCCcchhhcccceeeccccc-----------------------------cCCCCCceEecCC-ceEEecCCcEEE
Confidence 999987665542 3333332110 1112466666654 467889999999
Q ss_pred EEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 657 DCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 657 ~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
.|.+ .|.|.|.|.|+++|..+..+.++ ...+ .+|.|.++..+|+|.|+|.|.|..|..+.++.|.|++
T Consensus 134 ~C~~--~g~p~p~v~W~~~~~~~~~~~~~--~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~a 201 (201)
T 3s97_C 134 ECFA--LGNPVPDIRWRKVLEPMPSTAEI--STSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201 (201)
T ss_dssp EEEE--EEESCCEEEEEETTBCCCTTCEE--ETTT--TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEc--cCCCCCceEEEeCCCcCCCceee--cCCC--CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence 9999 79999999999999988755332 2223 3899999999999999999999999999999999973
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=194.70 Aligned_cols=165 Identities=22% Similarity=0.378 Sum_probs=131.6
Q ss_pred cccCCCceEEEEEEeeCCCCCc--EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 592 (808)
.+.+|+.+.|.|.+ .+.|.+ .+.|+|+|..+...... .....|.|. +.+|+|.|+|.|.|.. ...+
T Consensus 9 ~v~~G~~v~l~C~~--~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~ 76 (184)
T 3b5h_A 9 VEDLGSKILLTCSL--NDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTA 76 (184)
T ss_dssp EEEETTEEEEEEEE--ESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTT---SCEE
T ss_pred EEecCCCEEEEEEC--CCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCc---CcEE
Confidence 57899999999998 566666 89999999998766532 123367777 6899999999999832 3556
Q ss_pred EEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEE
Q psy2145 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFE 671 (808)
Q Consensus 593 ~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~ 671 (808)
.|.|... |.+.... ....+.+|+.+.|.|.+ .|.| .|.|.
T Consensus 77 ~l~V~~~------------------------------------P~~~~~~-~~~~~~~g~~~~l~C~~--~g~p~~~~i~ 117 (184)
T 3b5h_A 77 NIQLHGP------------------------------------PRVKAVK-SSEHINEGETAMLVCKS--ESVPPVTDWA 117 (184)
T ss_dssp EEEECCS------------------------------------CCCEESC-SEEEECTTSCEEEEEEC--CCSSCCCEEE
T ss_pred EEEEecC------------------------------------CceeecC-CCcEEcCCCcEEEEEEE--CCCCCCCeEE
Confidence 7777654 3333332 23457889999999999 7999 89999
Q ss_pred EEE---CCE-EccC--CCcEEEEEeCCEEEEEEccCC-CCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 672 WFV---NGV-ELKM--GSRFHVQHDFGYVTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 672 W~~---~g~-~l~~--~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
|++ +|. .+.. +.++.+..+++.+.|.|.++. .+|+|.|+|.|.|.+|....++.|.|.+
T Consensus 118 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp EEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 999 554 4433 368888888888999999999 9999999999999999999999999874
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-23 Score=199.45 Aligned_cols=170 Identities=17% Similarity=0.284 Sum_probs=129.6
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
+|.+...+.+. .+.+|+++.|.|.+ .+.|.+. |.|+|||..+.... ..|.|.+++.+|+|.|+|.|
T Consensus 7 ~p~i~~~p~~~-~v~~G~~v~L~C~~--~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a 73 (204)
T 3sgj_C 7 KAVVFLEPQWY-RVLEKDSVTLKCQG--AYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQT 73 (204)
T ss_dssp BCEEEEESCCS-EEETTCCEEEEEEC--CSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEEcCCCe-EEECCCCEEEEEcC--CCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEe
Confidence 56666666654 68999999999999 7888776 99999999887543 27999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEe
Q psy2145 582 TNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV 661 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~ 661 (808)
.|. ..+..+.|.|... |.+..... ..+.+|+.+.|.|.+.
T Consensus 74 ~n~--~~s~~~~l~V~~~------------------------------------p~~~~~~~--~~v~~G~~v~L~C~~~ 113 (204)
T 3sgj_C 74 QLS--TLSDPVQLEVHIG------------------------------------WLLLQAPR--WVFKEEDPIHLRCHSW 113 (204)
T ss_dssp TTS--BCCCCEEEEEECS------------------------------------SEEEECSC--SEEETTCCEEEEEEEG
T ss_pred CCC--cccccEEEEEecC------------------------------------ceEecCCc--eeEeCCCcEEEEEEec
Confidence 985 3444567777653 32222222 4678899999999993
Q ss_pred eCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe-CCcceEEEEEEEEEeCCCc
Q psy2145 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN-RAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 662 ~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G~~~~s~~l~V~~~p~~ 734 (808)
.+.|.+.|.|+|||..+... ... ..|.|.++..+|+|.|+|.|.| ..|..+..+.|.|.+++..
T Consensus 114 -~~~p~~~v~W~k~g~~~~~~------~~~--~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~ 178 (204)
T 3sgj_C 114 -KNTALHKVTYLQNGKGRKYF------HHN--SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178 (204)
T ss_dssp -GGCCCEEEEEEETTEEEEEE------EEC--CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred -CCCCCceEEEEECCcEeecc------cCC--ceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCC
Confidence 24467999999999987421 122 3799999999999999999999 5566677889999877644
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=210.31 Aligned_cols=206 Identities=18% Similarity=0.245 Sum_probs=128.4
Q ss_pred cCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCcee
Q psy2145 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 194 (808)
++.+|+|.|+|.|. |.......+.+ ..+|.+...+..+.
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~--------------------------------------~~~~~~~~~p~~~~ 49 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNW--------------------------------------LRELVMTQSPLTLS 49 (254)
T ss_dssp --------------------------------------------------------------------CCCEEEECSEEE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhhe--------------------------------------eeceeEEeCCceEE
Confidence 78899999999998 44333333333 22567777788899
Q ss_pred ecCCCeEEEEEEEeecCCC-----CeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCCCcEE
Q psy2145 195 IKEGQRAHFECRLIPVSDN-----TMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p-----~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 255 (808)
+.+|++++|.|.+ .+.| .+.|.|+|+ |..+ ....++.....++..+|.|.+++.+|+|.
T Consensus 50 v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 127 (254)
T 2c1o_A 50 VTIGQPASISCKS--SQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGI 127 (254)
T ss_dssp ECTTSCEEEEEEE--SSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred ecCCCcEEEEeec--cCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEE
Confidence 9999999999999 4666 489999984 3322 11356776666677799999999999999
Q ss_pred EEEEEEeCceeEE-EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEE
Q psy2145 256 YTCRAVNALGQAV-TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334 (808)
Q Consensus 256 Y~C~a~n~~g~~~-~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 334 (808)
|+|.|.|..+... ..+.|.|... ..+|.+..........+|+.++
T Consensus 128 Y~C~a~n~~~~~~~~~~~l~V~~~----------------------------------~~~P~v~~~~~~~~~~~g~~v~ 173 (254)
T 2c1o_A 128 YYCVQGSHFPPTFGAGTKLELKRA----------------------------------DAAPTVSIFPPSSEQLTSGGAS 173 (254)
T ss_dssp EEEEECSSSSCEEBCCEEEEECCC----------------------------------CBCCEEEEECCCHHHHHTTEEE
T ss_pred EEEEEEcCcceEecCCEEEEECCC----------------------------------CCCCeeEeecCChhhccCCcEE
Confidence 9999999765432 2346666431 1255555433333344688999
Q ss_pred EEEEEeecC-CCc-cEEEEEECCEeccCCC--cEEEEee-Cc----EEEEEEccCCCCCCeEEEEEEEcCCcce
Q psy2145 335 FEARLIPVG-DSK-LKVTWLRNGVPIQASN--RVSTMHD-FG----YVALNFKYTYPEDSGTYTCRAVNELGEA 399 (808)
Q Consensus 335 l~C~~~~~g-~p~-~~v~W~~~g~~l~~~~--~~~~~~~-~~----~~~L~I~~v~~~d~G~Y~C~a~n~~g~~ 399 (808)
|.|.+ .| .|. +.|+|+|||.++..+. ......+ ++ ...|.|.++..+|+|.|+|.|.|.....
T Consensus 174 l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 174 VVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp EEEEE--EEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred EEEEE--ecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 99999 45 444 6799999999887651 1111111 11 3579999999999999999999987654
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-23 Score=202.16 Aligned_cols=187 Identities=25% Similarity=0.410 Sum_probs=145.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC--ceEEEecCce--EEEEEccCCCCCcEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTETNNFGF--VALDIMQCLPEDSGVY 256 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~--~~L~I~~~~~~D~G~Y 256 (808)
..+|.|...+..+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.... .......++. ..|.|.+++.+|+|.|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKV--EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEE--ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEc--CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence 579999999999999999999999999 578889999999999987642 2222222232 2347899999999999
Q ss_pred EEEEEeCceeEE-EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEE
Q psy2145 257 TCRAVNALGQAV-TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHF 335 (808)
Q Consensus 257 ~C~a~n~~g~~~-~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l 335 (808)
+|.|.|..|... ..+.|.|.. .+|.+...+....+.+|+.+.|
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~------------------------------------~~~~~~~~~~~~~~~~g~~v~l 128 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAV------------------------------------LRDDFRVEPKDTRVAKGETALL 128 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECE------------------------------------ECCSCSBCCCCEEECTTSCEEE
T ss_pred EEEEecCCCccccccceEEEEE------------------------------------eCCCcEECCCccEEcCCCeEEE
Confidence 999999988764 356677653 1344555556778899999999
Q ss_pred EEEEeecCCCccEEEEEECCEeccC--------CCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy2145 336 EARLIPVGDSKLKVTWLRNGVPIQA--------SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407 (808)
Q Consensus 336 ~C~~~~~g~p~~~v~W~~~g~~l~~--------~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 407 (808)
.|.+. .|.|.+.+.|+++|..+.. ..++....+ + +|.|.++..+|+|.|+|.|.|..|...++..+.+
T Consensus 129 ~C~~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 129 ECGPP-KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-G--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp CCBCC-CEESCCEEEEEETTEEECCCCCC---CCCSEEEETT-T--EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred EEECC-CCCCCCeEEEEECCcCCCcccccccccCCcEEecCC-C--cEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 99862 5788999999999999873 334433322 3 6999999999999999999999999887755555
Q ss_pred Ee
Q psy2145 408 ES 409 (808)
Q Consensus 408 ~~ 409 (808)
..
T Consensus 205 ~~ 206 (217)
T 2vr9_A 205 VQ 206 (217)
T ss_dssp EC
T ss_pred EE
Confidence 43
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-23 Score=198.99 Aligned_cols=184 Identities=12% Similarity=0.154 Sum_probs=133.5
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.+|.|...+.. .+.+|++++|.|.+ .+ |.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.|
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 3p2t_A 4 PKPTLWAEPGS--VISWGNSVTIWCQG--TL-EAREYRLDKEESPAPWDRQN-PLEPKNKARFSIPSMTEDYAGRYRCYY 77 (196)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CT-TCCEEEEEETTSCSCSEEEC-CCSSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEccCCC--cCCCCCcEEEEeeC--CC-CCCEEEEEECCCCCcccccc-cccCCceEEEEeccCCcccCceEEEEE
Confidence 46777776655 58899999999998 56 77899999999887542111 011123458999999999999999999
Q ss_pred EeCCee--EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 582 TNALGE--AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 582 ~N~~G~--~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|..|. .+..+.|.|.... .+|.+..... ..+.+|+.++|.|.
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~---------------------------------~~p~~~~~~~--~~v~~G~~v~L~C~ 122 (196)
T 3p2t_A 78 RSPVGWSQPSDPLELVMTGAY---------------------------------SKPTLSALPS--PLVTSGKSVTLLCQ 122 (196)
T ss_dssp EETTEEBCCCCCEEEEEECSS---------------------------------CCCEEEEESC--SEECTTCCEEEEEE
T ss_pred eCCCcccCCCccEEEEecCCC---------------------------------CCCEEEeCCc--ceecCCCeEEEEEe
Confidence 999983 3445666665421 1355554433 26789999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcE-EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc-----ceEEEEEEEEE
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFGYVTLDITKCVPADSGVYMCKAINRAG-----EAVSSTSLKVK 729 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-----~~~~s~~l~V~ 729 (808)
+ .+ +.+.+.|+|+|..+...... ..........|.|.++..+|+|.|+|.|.|.++ ..+....|.|.
T Consensus 123 ~--~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 123 S--RS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS 195 (196)
T ss_dssp E--EE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred c--CC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence 8 45 56799999999887654322 222222345899999999999999999999987 23334566664
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=224.21 Aligned_cols=184 Identities=17% Similarity=0.231 Sum_probs=149.4
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCE-EEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG-IYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C 579 (808)
-.+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.+.|++++..+....... ......+|.|.+++.+|+| .|+|
T Consensus 156 c~~P~i~~~~~~~-~v~~G~~v~L~C~~--~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~~Y~C 230 (347)
T 2ifg_A 156 CGVPTLKVQVPNA-SVDVGDDVLLRCQV--EGRGLEQAGWILTELEQSATVMKS--GGLPSLGLTLANVTSDLNRKNVTC 230 (347)
T ss_dssp CCCCEEEEECCSS-CCBTTCCEEEEEEE--ECSSCCCCCEEESCCCSSEEECCC--CCSSEEEEEEESCCSTTTTCCEEE
T ss_pred CCCCceeccCCce-EEeCCCcEEEEEEE--ecCCCCEEEEEcCCceeecccccc--eecccceEEEeeCChHHCCCeEEE
Confidence 3578888877776 68999999999999 799999999999997654322111 1234458999999999999 9999
Q ss_pred EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|.|..|..+.++.|.|..+ |.+ . ...+.+|+.+.|.|.
T Consensus 231 ~a~n~~g~~~~~~~l~V~~~------------------------------------P~i--~---~~~~~~g~~v~l~C~ 269 (347)
T 2ifg_A 231 WAENDVGRAEVSVQVNVSFP------------------------------------ASV--Q---LHTAVEMHHWCIPFS 269 (347)
T ss_dssp CCEETTEECCEEECCCCBEE------------------------------------EEE--E---ECCCEESSSEEEEEE
T ss_pred EEEcCCCCEEEEEEEEEcCC------------------------------------Cee--e---eccCccCceEEEEEE
Confidence 99999999988888888654 332 0 123567999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-------CEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-------GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
+ .|.|.|.|.|+|+|..+..+......... ...+|.|.++..+|+|.|+|.|.|.+|.++.++.|.|..+|
T Consensus 270 ~--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 270 V--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp E--EEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred e--eecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 9 79999999999999999976665443221 25689999999999999999999999999999999998765
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=201.30 Aligned_cols=195 Identities=22% Similarity=0.351 Sum_probs=147.0
Q ss_pred CCCCeEEeec----CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce---EEEecCceEEEEEccCCCCCc
Q psy2145 181 TQAPIFTTSL----KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF---TETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~~----~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..+|.|..++ ..+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+....++ ..... ..+|.|.+++.+|+
T Consensus 9 ~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~ 84 (241)
T 3grw_A 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPA--AGNPTPSISWLKNGREFRGEHRIGGIKLRHQ--QWSLVMESVVPSDR 84 (241)
T ss_dssp --CCEESSGGGGSCCEEEEETTSEEEEECCE--ECSSCCEEEEEETTEECCGGGSTTCCEEEGG--GTEEEECSCCGGGC
T ss_pred CCCceeEcCCCCCCcceEEcCCCeEEEEEEe--cCCCCceeEEEECCcccCCCCcccceeeecc--ceEEEEEeCCcccC
Confidence 4577776553 35789999999999999 57788899999999998755432 22222 23899999999999
Q ss_pred EEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCe-eccCCCceEeecCCe
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV-FTQPMRDIHVAENQA 332 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~-~~~~~~~~~v~~G~~ 332 (808)
|.|+|.|.|..|....++.|.|...+ ..+|. +...+....+.+|+.
T Consensus 85 G~Y~C~~~~~~~~~~~~~~l~V~~~~---------------------------------~~~~~~~~~~~~~~~~~~g~~ 131 (241)
T 3grw_A 85 GNYTCVVENKFGSIRQTYTLDVLERS---------------------------------PHRPILQAGLPANQTAVLGSD 131 (241)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECCC---------------------------------CCCCEEEECTTCSEECCTTCC
T ss_pred EEEEEEEeecCCceEEEEEEEEeccC---------------------------------CCCceeecCCCccceecCCCE
Confidence 99999999999998888888887532 11233 333455677889999
Q ss_pred EEEEEEEeecCCCccEEEEEE----CCEeccCCCcEEEE--e------eCcEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 333 AHFEARLIPVGDSKLKVTWLR----NGVPIQASNRVSTM--H------DFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~~v~W~~----~g~~l~~~~~~~~~--~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
+.|.|.+ .|.|.+.+.|++ +|..+..+...... . .....+|.|.++..+|+|.|+|.|.|..|...
T Consensus 132 v~L~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~ 209 (241)
T 3grw_A 132 VEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209 (241)
T ss_dssp EEEEEEE--ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred EEEEEEE--ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEE
Confidence 9999999 789999999999 88888665432111 0 11345799999999999999999999999999
Q ss_pred EEEEEEEEeccccc
Q psy2145 401 TSSTLFVESKASLQ 414 (808)
Q Consensus 401 ~~~~l~V~~~~~~~ 414 (808)
.++.|.|..+|.+.
T Consensus 210 ~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 210 KAFWLSVHGPRAAE 223 (241)
T ss_dssp EEEEEEC-------
T ss_pred EEEEEEecCCCCCC
Confidence 99999998876543
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=200.52 Aligned_cols=192 Identities=23% Similarity=0.383 Sum_probs=145.8
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC-----ceEEEecCceE--EEEEccCCCCCc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS-----RFTETNNFGFV--ALDIMQCLPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~-----~~~~~~~~~~~--~L~I~~~~~~D~ 253 (808)
..||.|...+.++.+.+|++++|.|.+ .+.|.+.+.|+++|..+.... ......++... .|.|.+++.+|+
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 84 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKA--EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEE--EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEc--CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence 458999999999999999999999999 467888999999999986432 12222222221 345677899999
Q ss_pred EEEEEEEEeCceeE-EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCe
Q psy2145 254 GVYTCRAVNALGQA-VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQA 332 (808)
Q Consensus 254 G~Y~C~a~n~~g~~-~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~ 332 (808)
|.|+|.|.|..|.. ...+.|.|... ++.+...+....+.+|+.
T Consensus 85 G~Y~C~~~n~~g~~~~~~~~l~V~~~------------------------------------~~~~~~~~~~~~~~~g~~ 128 (212)
T 2v9r_A 85 GVYVCVARNYLGEAVSHDASLEVAIL------------------------------------RDDFRQNPSDVMVAVGEP 128 (212)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECEE------------------------------------CSSCSBCCCCEEEETTSC
T ss_pred eEEEEEEECCCCceeecceEEEEEec------------------------------------cccceeCCCceEecCCCc
Confidence 99999999998876 34677777542 334445556678899999
Q ss_pred EEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEEEEEecc
Q psy2145 333 AHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STLFVESKA 411 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~ 411 (808)
+.|.|.+. .+.|.+.+.|+++|..+..........+ + .|.|.++..+|+|.|+|.|.|..|...+. +.|.|..+|
T Consensus 129 ~~l~C~~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P 204 (212)
T 2v9r_A 129 AVMECQPP-RGHPEPTISWKKDGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204 (212)
T ss_dssp EEEECBCC-CEESCCEEEEEETTEEECTTSTTEEEET-T--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEEecC-CCCCCCEEEEEECCccCCCCcceEEccC-C--eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence 99999862 4788899999999999986543322222 3 79999999999999999999999987665 899999877
Q ss_pred ccc
Q psy2145 412 SLQ 414 (808)
Q Consensus 412 ~~~ 414 (808)
.+.
T Consensus 205 ~~~ 207 (212)
T 2v9r_A 205 SFV 207 (212)
T ss_dssp ---
T ss_pred hHh
Confidence 655
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=209.62 Aligned_cols=208 Identities=17% Similarity=0.162 Sum_probs=128.2
Q ss_pred ccccccccceeeeccCCCchhhhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCC-----CceEEEEeC--C
Q psy2145 18 SSKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDS-----NLKVEWFKN--G 90 (808)
Q Consensus 18 ~~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p-----~~~v~W~~~--g 90 (808)
.++.+|.|.|+|.|... ............+.+...|..+ .+.+|++++|.|.+.+ .| .+.|.|||+ |
T Consensus 10 ~v~~~dsg~Y~C~a~g~---~~~~~~~~~~~~~~~~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~~~v~W~k~~~g 83 (254)
T 2c1o_A 10 LVRPGTSVKLSCKASGY---SFTNYWMNWLRELVMTQSPLTL-SVTIGQPASISCKSSQ--SLLYSNGKTYLNWLLQRPG 83 (254)
T ss_dssp -------------------------------CCCEEEECSEE-EECTTSCEEEEEEESS--CCBCSSSCBCEEEEEECTT
T ss_pred eecCCccEEEEEcCchh---hhhhhhhheeeceeEEeCCceE-EecCCCcEEEEeeccC--cccccCCCCceEEEEeCCC
Confidence 37899999999999822 1111111111123344557777 8999999999999984 45 489999984 3
Q ss_pred EEee------------ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE-EEEEEEEecCCCcccccccccc
Q psy2145 91 RPVT------------IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETG 157 (808)
Q Consensus 91 ~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~ 157 (808)
..+. ...|+.+..+++..+|.|.+++.+|+|.|+|.|.|..+... ....|.|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~------------ 151 (254)
T 2c1o_A 84 QSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRA------------ 151 (254)
T ss_dssp SCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCC------------
T ss_pred CCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCC------------
Confidence 3221 13678877777888999999999999999999998765432 2335655321
Q ss_pred ceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC--ceEEE
Q psy2145 158 LEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTET 235 (808)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~~ 235 (808)
..+|.+...+....+.+|+.++|.|.+.+...+.+.|.|+|||.++..+. .....
T Consensus 152 -----------------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 208 (254)
T 2c1o_A 152 -----------------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ 208 (254)
T ss_dssp -----------------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCC
T ss_pred -----------------------CCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccc
Confidence 34677776655544557889999999964222236799999999987651 11111
Q ss_pred e-cCc----eEEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 236 N-NFG----FVALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 236 ~-~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
. .++ ...|.|.++..+|+|.|+|.|.|....
T Consensus 209 ~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 244 (254)
T 2c1o_A 209 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 244 (254)
T ss_dssp CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred cCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence 1 111 347999999999999999999997654
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=200.80 Aligned_cols=194 Identities=20% Similarity=0.352 Sum_probs=151.2
Q ss_pred CCCCeEEeec----CceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce---EEEecCceEEEEEccCCCCCc
Q psy2145 181 TQAPIFTTSL----KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF---TETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~~----~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..+|.|...+ ....+.+|++++|.|.+ .+.|.+.|.|+|+|..+....++ ..... ..+|.|.+++.+|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~ 88 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVPSDK 88 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCE--EEESCCEEEEEETTEECCGGGSTTCCEEEGG--GTEEEECSCCGGGC
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEec--ccCCCCeEEEEECCccccccccccceeeecC--cceEEEecCCcccC
Confidence 4578887766 67889999999999999 46788899999999998765443 22222 23799999999999
Q ss_pred EEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec-cCCCceEeecCCe
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT-QPMRDIHVAENQA 332 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~ 332 (808)
|.|+|.|.|..|.....+.|.|...+. .+|.+. ..+....+.+|+.
T Consensus 89 G~Y~C~~~n~~~~~~~~~~l~V~~~~~---------------------------------~~p~~~~~~~~~~~~~~g~~ 135 (231)
T 3ojm_B 89 GNYTCVVENEYGSINHTYHLDVVERSR---------------------------------HRPILQAGLPANASTVVGGD 135 (231)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECCCC---------------------------------CCCEECTTCSCCEEEETTCC
T ss_pred EEEEEEEecccCcccccEEEEEEcCCC---------------------------------CCCceeeccCCceEEEeCCc
Confidence 999999999999988888898875321 233333 3345678899999
Q ss_pred EEEEEEEeecCCCccEEEEEE----CCEeccCCCcE--EEEee-----CcEEEEEEccCCCCCCeEEEEEEEcCCcceEE
Q psy2145 333 AHFEARLIPVGDSKLKVTWLR----NGVPIQASNRV--STMHD-----FGYVALNFKYTYPEDSGTYTCRAVNELGEAVT 401 (808)
Q Consensus 333 ~~l~C~~~~~g~p~~~v~W~~----~g~~l~~~~~~--~~~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~ 401 (808)
+.|.|.+ .+.|.+.+.|++ +|..+..+... ..... ....+|.|.++..+|+|.|+|.|.|..|....
T Consensus 136 ~~l~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 213 (231)
T 3ojm_B 136 VEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213 (231)
T ss_dssp EEEECCE--ECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEEEE--ecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEee
Confidence 9999998 789999999999 88877654321 11111 11136999999999999999999999999999
Q ss_pred EEEEEEEecccc
Q psy2145 402 SSTLFVESKASL 413 (808)
Q Consensus 402 ~~~l~V~~~~~~ 413 (808)
++.|.|..+|..
T Consensus 214 ~~~l~V~~~p~~ 225 (231)
T 3ojm_B 214 SAWLTVLPKQQA 225 (231)
T ss_dssp EEEEEEECCC--
T ss_pred EEEEEEecCCCC
Confidence 999999877643
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=196.48 Aligned_cols=173 Identities=18% Similarity=0.293 Sum_probs=133.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC-------------------CCCeEEEeeCcEEEEEECCCCCCCCE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED-------------------SSRITTKHDFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~-------------------~~~~~~~~~~~~~~L~I~~v~~~D~G 575 (808)
.+.+|+++.|.|.+ .+.|.+.|.|+|++..... ..++.+..+ + +|.|.+++.+|+|
T Consensus 10 ~v~~G~~v~L~C~~--~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~--~L~i~~v~~~D~G 84 (208)
T 3r4d_A 10 QVAEDNNVLLLVHN--LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-G--SLLFQMITMKDMG 84 (208)
T ss_dssp EEETTCCEEEEEEC--CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT-S--CEEECSCCGGGCE
T ss_pred eeecCCcEEEEEeC--CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC-C--eEEEccccccCCe
Confidence 57899999999997 7889999999998643221 223333222 2 6999999999999
Q ss_pred EEEEEEEeCC-eeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 576 IYICKATNAL-GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 576 ~Y~C~a~N~~-G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
.|+|.+.|.. +.....+.|.|...+. +|.+..... . +.+|+.+
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~---------------------------------~p~i~~~~~--~-~~~g~~v 128 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPVT---------------------------------QPFLQVTNT--T-VKELDSV 128 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCCC---------------------------------CCEEEESCS--S-CCTTCCE
T ss_pred EEEEEEEcccCceeEEEEEEEeccCCC---------------------------------CCEEecCCc--e-EeeCCCE
Confidence 9999999985 6777778888875422 244443322 2 8899999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE-EEEEEEEeCCC
Q psy2145 655 HYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVKSKSD 733 (808)
Q Consensus 655 ~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-s~~l~V~~~p~ 733 (808)
.|.|.+ .|.| |.|.|++||..+..+.++.+..+++ +|.|.++..+|+|.|+|.|.|.+|...+ .++|.|..+|-
T Consensus 129 ~l~C~~--~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 129 TLTCLS--NDIG-ANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp EEEEEC--SCTT-CEEEEEETTEECCCCSSEEEETTTT--EEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred EEEEEC--CCCC-CceEEEECCEeCCCCCCeEEcCCCC--EEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 999999 7766 8999999999999888887765543 8999999999999999999999998766 47777766643
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=194.34 Aligned_cols=170 Identities=18% Similarity=0.294 Sum_probs=129.9
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.|...+... .+.+|+++.|.|.+ .+.|.+ .+.|+|+|..+.... + .|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~i~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~i~W~~~~~~~~~~~--------~--~L~i~~v~~~d~G~Y~C~ 69 (176)
T 1f2q_A 3 QKPKVSLNPPWN-RIFKGENVTLTCNG--NNFFEVSSTKWFHNGSLSEETN--------S--SLNIVNAKFEDSGEYKCQ 69 (176)
T ss_dssp -CCCCEEESSCS-EEETTCCEEEECCT--TCC----CCEEEETTEECSCCS--------S--EEEECSCCGGGCEEEEEE
T ss_pred CCCEEEcCCCCc-ceecCCcEEEEEeC--CCCCCcceEEEEECCeECCCCc--------e--EEEEeccceecCEEEEEE
Confidence 367777777765 58999999999998 777775 699999999887532 2 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v 660 (808)
|.|..++. .+.|.|... |.+... . ...+.+|+.+.|.|.+
T Consensus 70 ~~~~~~s~--~~~l~V~~~------------------------------------~~~~~~-~-~~~~~~g~~~~l~C~~ 109 (176)
T 1f2q_A 70 HQQVNESE--PVYLEVFSD------------------------------------WLLLQA-S-AEVVMEGQPLFLRCHG 109 (176)
T ss_dssp CTTSSCCC--CEEEEEECS------------------------------------SEEEEE-S-CSEEETTSCEEEEEEE
T ss_pred cCCccccc--cEEEEEeCc------------------------------------ceeecC-C-cceeeCCCCEEEEEEe
Confidence 99977644 455666531 222222 1 2467899999999998
Q ss_pred eeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc-ceEEEEEEEEEeCCC
Q psy2145 661 VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG-EAVSSTSLKVKSKSD 733 (808)
Q Consensus 661 ~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~s~~l~V~~~p~ 733 (808)
. .|.|.+.|.|+|||..+.... ....|.|.++..+|+|.|+|.|.|..| ..+.++.|.|..+|.
T Consensus 110 ~-~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 110 W-RNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp G-GGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred c-CCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 4 367888999999999985432 123899999999999999999999755 445568999998874
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=190.31 Aligned_cols=167 Identities=17% Similarity=0.314 Sum_probs=128.2
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcE-EEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK-VEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~-v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.+...+... .+.+|+.+.|.|.+ .+.|.+. +.|+|+|..+.... + .|.|.+++.+|+|.|+|.
T Consensus 6 ~~p~i~~~p~~~-~v~~G~~v~L~C~~--~~~p~~~~~~W~~~~~~~~~~~--------~--~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 6 PKAVVFLEPQWY-SVLEKDSVTLKCQG--AYSPEDNSTQWFHNESLISSQA--------S--SYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CCCEEEEESCCS-EEETTCCEEEEEEC--CCBTTBCCCEEEETTEEEESSC--------S--EEEESSCCGGGCEEEEEE
T ss_pred CCCEEEEcCCce-eeeCCCcEEEEeeC--CCCCCCcceEEEECCEEccCCc--------e--EEEEeCCCcccCEEEEEE
Confidence 467777766664 58999999999998 7888776 88999999876422 2 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v 660 (808)
|.|..+ +..+.|.|... |.+... . ...+.+|+.+.|.|.+
T Consensus 73 ~~n~~~--s~~~~l~V~~~------------------------------------~~~~~~-~-~~~~~~g~~~~l~C~~ 112 (175)
T 1fnl_A 73 TNLSTL--SDPVQLEVHIG------------------------------------WLLLQA-P-RWVFKEEDPIHLRCHS 112 (175)
T ss_dssp CSSSCC--CCCEEEEEECS------------------------------------SEEEEC-S-CSEEETTCCEEEEEEE
T ss_pred eeCCcc--cccEEEEEeCC------------------------------------CceeeC-C-CceecCCCCEEEEEEc
Confidence 999665 34566666632 222222 1 2457899999999999
Q ss_pred eeCCCCC-eEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc-eEEEEEEEEEeC
Q psy2145 661 VPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE-AVSSTSLKVKSK 731 (808)
Q Consensus 661 ~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~s~~l~V~~~ 731 (808)
.|.|+ +.|.|+|||..+... ... ..|.|.++..+|+|.|+|.|.|..|. .+.++.|.|.++
T Consensus 113 --~~~~~~~~~~W~k~g~~~~~~------~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (175)
T 1fnl_A 113 --WKNTALHKVTYLQNGKDRKYF------HHN--SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA 175 (175)
T ss_dssp --CTTCCCEEEEEEETTEEEEEE------EEC--CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred --CCCCCceEEEEEECCeEccCC------CCC--CEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence 67655 599999999988421 122 37999999999999999999997764 555778888753
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=198.91 Aligned_cols=189 Identities=18% Similarity=0.154 Sum_probs=130.4
Q ss_pred ccceeecCCCCccccCCC--CcEEEEEEEeeCCCCCceEEEEe---CCEEeeccCcEEEEeeCCeEEEEEcccCcCCCee
Q psy2145 48 FIYYTVTKPKSIENLRER--GHAHFECKLEPVTDSNLKVEWFK---NGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGT 122 (808)
Q Consensus 48 ~~~~~~~~p~~~~~v~~G--~~v~l~C~~~~~~~p~~~v~W~~---~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~ 122 (808)
|++.....|..+ .+.+| ++++|.|.+. + |.+.+.|++ +|..+..+.++..... + .|.|.+++.+|+|.
T Consensus 6 f~~~~~~~p~~v-~v~eG~~~~v~L~C~~~--~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~-~--~l~I~~v~~~D~G~ 78 (213)
T 2x1w_L 6 FIASVSDQHGVV-YITENKNKTVVIPCLGS--I-SNLNVSLCARYPEKRFVPDGNRISWDSK-K--GFTIPSYMISYAGM 78 (213)
T ss_dssp BCCC----CEEE-EECCSTTCEEEECCCBS--S-TTCCEEEEEETTTEEECCCSSSCEEETT-T--EEEEEGGGTTTCSE
T ss_pred ccccCcCCceEE-EEecCCCccEEEeeccC--C-CCcEEEEEhhcCCCccccCCCcccccCC-c--cEEEccCChhcCce
Confidence 333333456777 89999 9999999997 3 668999988 4777776655543322 2 59999999999999
Q ss_pred EEEEEEecCcceEEE-EEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecC-ceeecCCCe
Q psy2145 123 YTCRAVNLVGFAEVQ-ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK-NCEIKEGQR 200 (808)
Q Consensus 123 Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~~v~~G~~ 200 (808)
|+|.|.|..+...+. +.|.|.. ..+|.+...+. .+.+.+|++
T Consensus 79 Y~C~a~n~~~~~~s~~~~l~v~~------------------------------------~~~p~~~~~~~~~~~v~~G~~ 122 (213)
T 2x1w_L 79 VFCEAKINDESYQSIMYIVVVVG------------------------------------YRIYDVVLSPSHGIELSVGEK 122 (213)
T ss_dssp EEEEEC----CEECCCEEEEECB------------------------------------CCEEEEEEESCSCEEEETTCC
T ss_pred EEEEEEECCeeEEEEEEEEEEeC------------------------------------CcccceEEcCCCCeEEcCCCC
Confidence 999999854433222 4555531 12344544444 458999999
Q ss_pred EEEEEEEeecCCCCeEEEEeeCCEEccCCCc-eEEEe-------cCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEE
Q psy2145 201 AHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-FTETN-------NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGN 272 (808)
Q Consensus 201 v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~-~~~~~-------~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 272 (808)
++|.|.+.+...+.+.+.|+++|..+..... ..... .....+|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 123 v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 202 (213)
T 2x1w_L 123 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTF 202 (213)
T ss_dssp EEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEE
Confidence 9999999543344568999999887543211 10100 112347999999999999999999999999999999
Q ss_pred EEEeeCC
Q psy2145 273 LLVHSKK 279 (808)
Q Consensus 273 l~V~~~~ 279 (808)
|.|..+|
T Consensus 203 l~V~~~p 209 (213)
T 2x1w_L 203 VRVHEDP 209 (213)
T ss_dssp EEEEC--
T ss_pred EEEeccc
Confidence 9998755
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-23 Score=201.89 Aligned_cols=174 Identities=20% Similarity=0.342 Sum_probs=132.9
Q ss_pred cccCCCceEEEEEEeeCCCC----CcEEEEEE----------------CCEecCC-----CCCeEEEe---eCcEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP----TLKVEWFR----------------NEKPLED-----SSRITTKH---DFGYVAMDL 566 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P----~~~v~W~k----------------~g~~l~~-----~~~~~~~~---~~~~~~L~I 566 (808)
.+.+|+.+.|.|.+ .+.| .+.|.|+| +|..+.. ..++.+.. ..+..+|.|
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i 88 (214)
T 3jz7_A 11 EKAKGETAYLPCKF--TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV 88 (214)
T ss_dssp EEETTSCEEECCBC--CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred EEecCCCEEEEEEE--ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence 58899999999998 6666 46999998 5555432 34554432 123447999
Q ss_pred CCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 567 SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 567 ~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
.+++.+|+|.|+|.|.|..|.....+.|.|...|.+ |.... ..
T Consensus 89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~---------------------------------~~~~~----~~ 131 (214)
T 3jz7_A 89 TNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG---------------------------------TRCFV----DG 131 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBS---------------------------------CEEEE----ES
T ss_pred ccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCC---------------------------------ceeee----ec
Confidence 999999999999999999999999999999875442 11111 12
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEEC--CEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVN--GVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
.+.+|+.+.|.|.+. .|.|.|.|.|+++ +..+.....+. ..+ .+|.|.++..+|+|.|+|.|+|.+|..+.++
T Consensus 132 ~~~~g~~v~l~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~~--~~~--~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~ 206 (214)
T 3jz7_A 132 SEEIGNDFKLKCEPK-EGSLPLQFEWQKLSDSQTMPTPWLAE--MTS--PVISVKNASSEYSGTYSCTVQNRVGSDQCML 206 (214)
T ss_dssp CCBTTCCEEEEEECS-BCCSSCEEEEEECSTTCCCCGGGGGG--TTS--SEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred ceecCCcEEEEecCC-CCCCCCEEEEEECCCCCccCccceec--cCC--CEEEEecCCHHHCEEEEEEEEcCCCcEEEEE
Confidence 478899999999984 5999999999995 44443222111 112 2899999999999999999999999999999
Q ss_pred EEEEEeCC
Q psy2145 725 SLKVKSKS 732 (808)
Q Consensus 725 ~l~V~~~p 732 (808)
.|.|..+|
T Consensus 207 ~l~V~~P~ 214 (214)
T 3jz7_A 207 RLDVVPPS 214 (214)
T ss_dssp EECCBCCC
T ss_pred EEEEeCCC
Confidence 99998553
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-23 Score=200.18 Aligned_cols=174 Identities=10% Similarity=0.108 Sum_probs=117.7
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.+|.|...+.. .+.+|++++|.|.+ .+.|. .+.|+|+|..+....+. .........|.|.+++.+|+|.|+|.|
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 2d3v_A 4 SKATLWAEPGS--VISRGNSVTIRCQG--TLEAQ-EYRLVKEGSPEPWDTQN-PLEPKNKARFSIPSMTEHHAGRYRCYY 77 (196)
T ss_dssp CBCEEEEESCS--EEETTCCEEEEEEC--CTTCC-EEEEEETTCSSCSEEEC-CCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCC--cccCCCeEEEEEeC--CCCCc-EEEEEECCCCCCccccc-ccCCccccEEEeccCChhHCeEEEEEE
Confidence 46778776653 58899999999998 67766 99999999877532110 001233458999999999999999999
Q ss_pred EeCCeeEE--EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 582 TNALGEAV--TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 582 ~N~~G~~~--~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|..|... ..+.|.|.... .+|.+.... . ..+.+|+.++|.|.
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~---------------------------------~~p~i~~~~-~-~~v~~G~~v~L~C~ 122 (196)
T 2d3v_A 78 YSPAGWSEPSDPLELVVTGFY---------------------------------NKPTLSALP-S-PVVTSGENVTLQCG 122 (196)
T ss_dssp EETTEECBCCCCEEEEEECSS---------------------------------CCCEEEC-------------CEEEEE
T ss_pred eCCCCcCCcCccEEEEecCCC---------------------------------CCCeEEccC-C-ccccCCCcEEEEEE
Confidence 99988543 44667776421 135554332 2 36889999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcE-EEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRF-HVQH-DFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+ .|.| +.|.|+|||..+...... .... ......|.|.++..+|+|.|+|.|.|..+.
T Consensus 123 ~--~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 123 S--RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp E--SSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred c--CCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 9 7888 999999999987532211 1111 112368999999999999999999999874
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-23 Score=195.31 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=121.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecC----------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLE----------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
.+.+|+.+.|.|...+.+.|.+.|.|+|++..|. ...++.+.. ++ +|.|.+++.+|+|.|+|.|.|.
T Consensus 7 ~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~-~g--sL~I~~v~~~D~G~Y~C~~~n~ 83 (176)
T 1hng_A 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-NG--DLKIKNLTRDDSGTYNVTVYST 83 (176)
T ss_dssp EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT-TS--CEEESSCCGGGCEEEEEEEEET
T ss_pred EEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECC-CC--cEEEcccccccCEEEEEEEEeC
Confidence 5789999999995322336778999999997542 345666633 33 5999999999999999999999
Q ss_pred CeeE--EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEee
Q psy2145 585 LGEA--VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP 662 (808)
Q Consensus 585 ~G~~--~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~ 662 (808)
.|.. ...+.|.|...+ .+|.+.. .+..++|.|.+
T Consensus 84 ~g~~~~~~~~~l~V~~~~---------------------------------~~p~i~~---------~~~~v~L~C~~-- 119 (176)
T 1hng_A 84 NGTRILNKALDLRILEMV---------------------------------SKPMIYW---------ECSNATLTCEV-- 119 (176)
T ss_dssp TCCEEEEEEEEEEEECCC---------------------------------CCCEEEE---------ETTTTEEEEEC--
T ss_pred CCCEEEEEEEEEEEeCCC---------------------------------CCCEEEe---------cCCcEEEEEEe--
Confidence 9987 666777776532 1244432 24459999999
Q ss_pred CCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 663 VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 663 ~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
.|.|.|.|.|+|||.+|..+.+ +.|..+..+|+|.|+|.|.|.+|..++++.|.|
T Consensus 120 ~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 120 LEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SSCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred cCCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 8999999999999999876544 344467799999999999999999999888765
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=194.13 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=127.0
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe-EEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.|...+.. .+.+|++++|.|.+ .+.|. .+.|+|+|..+....+. ......+ .|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~ 76 (198)
T 1ugn_A 4 PKPTLWAEPGS--VITQGSPVTLRCQG--GQETQ-EYRLYREKKTAPWITRIPQELVKKG--QFPIPSITWEHTGRYRCY 76 (198)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CTTCC-CEEEEESSSCCHHHHTSCHHHHTTT--EEEESSCCGGGCEEEEEE
T ss_pred CCCeEeccCCC--cccCCCcEEEEEEe--cCCCc-EEEEEECCccccccccccccCCccc--EEEECCCCHHHCeEEEEE
Confidence 46788766553 58999999999998 67775 69999999877421110 0011122 799999999999999999
Q ss_pred EEeCC-e--eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 581 ATNAL-G--EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 581 a~N~~-G--~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
|.|.. | ..+..+.|.|...+ .+|.+.... . ..+.+|+.++|.
T Consensus 77 a~n~~~g~~~~s~~~~l~V~~~~---------------------------------~~p~i~~~~-~-~~v~~G~~v~L~ 121 (198)
T 1ugn_A 77 YGSDTAGRSESSDPLELVVTGAY---------------------------------IKPTLSAQP-S-PVVNSGGNVTLQ 121 (198)
T ss_dssp EEETTTEECCCCCCEEEEEECSS---------------------------------CCCEEEEES-C-SEEETTCCEEEE
T ss_pred EECCCCCcccCCccEEEEEcccc---------------------------------cCCccccCC-c-cccCCCCcEEEE
Confidence 99988 6 33455777776521 135554432 2 468899999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccCCCc-EEEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCCcce-----EEEEEEEEE
Q psy2145 658 CRVVPVGDPTMRFEWFVNGVELKMGSR-FHVQH-DFGYVTLDITKCVPADSGVYMCKAINRAGEA-----VSSTSLKVK 729 (808)
Q Consensus 658 C~v~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-----~~s~~l~V~ 729 (808)
|.+ .|. .+.|.|+|||..+..... +.+.. .+....|.|.++..+|+|.|+|.|.|..+.. +..+.|.|.
T Consensus 122 C~~--~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 122 CDS--QVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EEC--SSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred Eec--CCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999 677 789999999998754322 12222 2235699999999999999999999998732 445667665
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=194.92 Aligned_cols=183 Identities=15% Similarity=0.278 Sum_probs=145.9
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
.+.++..|.++ .+.+|+.+.|.|.+. +.|.+.|.|+|+|..+..+.+ .+|.|.+++.+|+|.|+|.|.
T Consensus 18 ~~~i~~~p~~~-~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~~~ 85 (218)
T 3k0w_A 18 GSKITVNPESK-AVLAGQFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCRVN 85 (218)
T ss_dssp -CCEEECCCCE-EEETTSBEEEECEET--TTTSSEEEEEETTEECTTCCS---------SEEEETTCCGGGCEEEEEEEE
T ss_pred CCEEEECCCCe-EEeCCCcEEEEeeec--CCCCCEEEEEECCEECCCCCC---------CEEEEccCChhhCeEeEEEEE
Confidence 45667788888 899999999999997 578889999999998875422 269999999999999999999
Q ss_pred ecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEE
Q psy2145 129 NLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL 207 (808)
Q Consensus 129 n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~ 207 (808)
|..|.. ...+.|.|...+..... ........+|.+...+....+.+|+.+.|.|.+
T Consensus 86 n~~~~~~s~~~~l~V~~~~~~~~~-----------------------~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~ 142 (218)
T 3k0w_A 86 NNFTFEFSQWSQLDVCDIPESFQR-----------------------SVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142 (218)
T ss_dssp CTTCCEECCCEEEEEECCCGGGCT-----------------------TCCSBCCSSCEEEECCCCEEECTTCCEEEECEE
T ss_pred cCCCCceeeEEEEEEEccCccccc-----------------------ccccccCCCceEEECCCceeecCCCcEEEEEEe
Confidence 987755 45577777654321100 001122456888888989999999999999999
Q ss_pred eecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCcee-EEEEEEEEEee
Q psy2145 208 IPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQ-AVTSGNLLVHS 277 (808)
Q Consensus 208 ~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~ 277 (808)
.+.|.+.|.|+++|..+..+... +|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus 143 --~g~p~~~v~W~~~~~~~~~~~~~---------~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 143 --VGSPIPHYQWFKNELPLTHETKK---------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp --EBSSCCEEEEEETTEECTTCCSS---------EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred --cccCCCeEEEEECCEECCCCCCC---------EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 57889999999999998765432 7999999999999999999998887 44567788765
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=197.80 Aligned_cols=181 Identities=20% Similarity=0.266 Sum_probs=139.0
Q ss_pred cCCCCccccCCCCcEEEEEE-EeeCCCCC-ceEEEEeCCEEeec--cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEe
Q psy2145 54 TKPKSIENLRERGHAHFECK-LEPVTDSN-LKVEWFKNGRPVTI--GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~-~~~~~~p~-~~v~W~~~g~~l~~--~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 129 (808)
..+..+ .+.+|+.+.|.|. +. +.|. +.+.|+|++..+.. ..+....... .+|.|.+++.+|+|.|+|.+.|
T Consensus 13 ~~~~~~-~v~~G~~v~L~C~~~~--~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~~~~ 87 (201)
T 3s97_C 13 EERPEV-RVKEGKGMVLLCDPPY--HFPDDLSYRWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSS 87 (201)
T ss_dssp SCCCCE-EEETTCCEEECCCCCS--EESSCCEEEEEESSTTCBCCCSSSEEECTTT--CCEEESSCCGGGCEEEEEEEEE
T ss_pred CCCceE-EEECCCCEEEeccccc--cCCCceEEEEEECCceeeeeeCCCeEEEcCC--CeEEECcCCcccCeEEEEEEEe
Confidence 344566 8999999999999 66 4577 89999999988752 3333333333 3699999999999999999999
Q ss_pred cCcceEE---EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEE
Q psy2145 130 LVGFAEV---QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECR 206 (808)
Q Consensus 130 ~~g~~~~---~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~ 206 (808)
..+.... ...+.+..... ....+|.+...+....+.+|+.+.|.|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~p~~~~~~~~~~~~~g~~~~l~C~ 136 (201)
T 3s97_C 88 PSITKSVFSKFIPLIPIPERT-------------------------------TKPYPADIVVQFKDVYALMGQNVTLECF 136 (201)
T ss_dssp GGGTEEEECCCEEEEEECCSS-------------------------------CCCEEEEEEEECCCEEEETTCCEEEEEE
T ss_pred cCCCcchhhcccceeeccccc-------------------------------cCCCCCceEecCCceEEecCCcEEEEEE
Confidence 7765543 23333322110 1134677887777888999999999999
Q ss_pred EeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEe
Q psy2145 207 LIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 207 ~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 276 (808)
+ .+.|.+.|.|++++..+....+ ....++ +|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 137 ~--~g~p~p~v~W~~~~~~~~~~~~--~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 137 A--LGNPVPDIRWRKVLEPMPSTAE--ISTSGA--VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp E--EEESCCEEEEEETTBCCCTTCE--EETTTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred c--cCCCCCceEEEeCCCcCCCcee--ecCCCC--EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 9 5778899999999998875533 233333 89999999999999999999999999999999885
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-22 Score=192.19 Aligned_cols=174 Identities=15% Similarity=0.232 Sum_probs=128.6
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC-EecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE-KPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g-~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+.+.|.|.+ .|.|.|.|.|+++. .++. .+ ....+....|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 12 ~~~~G~~v~L~C~~--~g~P~p~i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 85 (202)
T 1vca_A 12 LAQIGDSVSLTCST--TGCESPFFSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ 85 (202)
T ss_dssp EEETTSCEEEEEEE--ESCSSCEEEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEcCCCcEEEEEee--cCCCCCeEEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence 45599999999999 78999999999843 3221 11 122334457999999999999999999999999888899
Q ss_pred EEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-CC--eEE
Q psy2145 594 MKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-PT--MRF 670 (808)
Q Consensus 594 l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~--p~i 670 (808)
|.|...|.. |.+.. . ..+.+|+.++|.|.+ .|. |. +.|
T Consensus 86 l~V~~~p~~---------------------------------~~~~~--~--~~~~~G~~~~L~C~~--~~~~p~~~~~i 126 (202)
T 1vca_A 86 VEIYSFPKD---------------------------------PEIHL--S--GPLEAGKPITVKCSV--ADVYPFDRLEI 126 (202)
T ss_dssp EEEEBCCSC---------------------------------CEEEE--S--SCEETTSCEEEEEEE--EEEBSGGGEEE
T ss_pred EEEEeCCCC---------------------------------CEeCC--c--eEEcCCCCEEEEEEE--CCcCCCCCeEE
Confidence 999865431 22221 1 458899999999999 554 43 589
Q ss_pred EEEECCEEccCCCcEEE----EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc-------eEEEEEEEEEeCCC
Q psy2145 671 EWFVNGVELKMGSRFHV----QHDFGYVTLDITKCVPADSGVYMCKAINRAGE-------AVSSTSLKVKSKSD 733 (808)
Q Consensus 671 ~W~~~g~~l~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-------~~~s~~l~V~~~p~ 733 (808)
.|+|||..|........ ........|.|..+..+|.|.|+|.|.|.+|. .+.+..|.|..+|.
T Consensus 127 ~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred EEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 99999998854211000 00112346789988889999999999999986 45688899988874
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=185.38 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=132.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 140 (808)
.+.+|++++|.|.+.+.+.|...+.|+|+|..|..+... .....|.|. +.+|+|.|+|.|.|. ....+.|
T Consensus 9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l 78 (184)
T 3b5h_A 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANI 78 (184)
T ss_dssp EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEE
T ss_pred EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC---cCcEEEE
Confidence 578999999999998533344499999999998866432 223467777 689999999999983 2356667
Q ss_pred EEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEE
Q psy2145 141 QCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEW 219 (808)
Q Consensus 141 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W 219 (808)
.| ..+|.+...+....+.+|+.++|.|.+ .+.| .+.|.|
T Consensus 79 ~V--------------------------------------~~~P~~~~~~~~~~~~~g~~~~l~C~~--~g~p~~~~i~W 118 (184)
T 3b5h_A 79 QL--------------------------------------HGPPRVKAVKSSEHINEGETAMLVCKS--ESVPPVTDWAW 118 (184)
T ss_dssp EE--------------------------------------CCSCCCEESCSEEEECTTSCEEEEEEC--CCSSCCCEEEE
T ss_pred EE--------------------------------------ecCCceeecCCCcEEcCCCcEEEEEEE--CCCCCCCeEEE
Confidence 66 346677777777789999999999999 6788 799999
Q ss_pred ee---CCE-EccC--CCceEEEecCceEEEEEccCC-CCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 220 FH---NNV-PIKS--GSRFTETNNFGFVALDIMQCL-PEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 220 ~~---~g~-~l~~--~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
++ ++. .+.. ..++.+..+++...|.|.++. .+|+|.|+|.|.|..|....++.|.|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp EECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 99 444 4432 256777777777799999999 8999999999999999999998888853
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=204.69 Aligned_cols=175 Identities=17% Similarity=0.269 Sum_probs=127.9
Q ss_pred cccCCCceEEEEEEeeCC---CCCcEEEEEECCEecC------------------------------CCCCeEEEeeCcE
Q psy2145 515 AVEEGKNAHFSCRLIPVG---DPTLKVEWFRNEKPLE------------------------------DSSRITTKHDFGY 561 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g---~P~~~v~W~k~g~~l~------------------------------~~~~~~~~~~~~~ 561 (808)
.+.+|+.+.|.|.+ .+ .|.+.|.|+|++.... ...|+.+.. .+.
T Consensus 13 ~v~~G~~v~L~C~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~ 89 (250)
T 2fbo_J 13 EVHAGGTVELPCSY--QLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-LAA 89 (250)
T ss_dssp EECTTSCEEECCEE--EECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-TTS
T ss_pred EEecCCeEEEEEEe--EcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-CCc
Confidence 68999999999999 45 8889999999985431 112332222 123
Q ss_pred EEEEECCCCCCCCEEEEEEEEeCCeeE-----EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC
Q psy2145 562 VAMDLSHVRAEDEGIYICKATNALGEA-----VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636 (808)
Q Consensus 562 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-----~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P 636 (808)
.+|.|.+++.+|+|.|+|.|.|..+.. ..++.|.|...+. +|
T Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---------------------------------~~ 136 (250)
T 2fbo_J 90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP---------------------------------SN 136 (250)
T ss_dssp CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC---------------------------------CS
T ss_pred ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC---------------------------------CC
Confidence 479999999999999999999987743 5677787765321 13
Q ss_pred eEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE----------------------EEEeCCEE
Q psy2145 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH----------------------VQHDFGYV 694 (808)
Q Consensus 637 ~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~----------------------~~~~~~~~ 694 (808)
.+.........+.+|+.+.|.|.+ .|.|.|.|.|+|+|..+....... .... +..
T Consensus 137 ~~~~~~~~~~~v~~g~~v~L~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 213 (250)
T 2fbo_J 137 NVHVSTAEVVQVDEGNDITMTCPC--TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GAR 213 (250)
T ss_dssp CCEECCCSEEECCTTCCEEECCCE--ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTT
T ss_pred eEEEecCceEEecCCCcEEEEEEe--cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-Ccc
Confidence 333333334567889999999999 799999999999999886533111 1111 124
Q ss_pred EEEEccCCCCCcEEEEEEEEe---CCcceEEEEEEEE
Q psy2145 695 TLDITKCVPADSGVYMCKAIN---RAGEAVSSTSLKV 728 (808)
Q Consensus 695 ~L~I~~v~~~D~G~Y~C~A~N---~~G~~~~s~~l~V 728 (808)
+|.|.++..+|+|.|+|.|.| .+|....++.|.|
T Consensus 214 ~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp EEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred EEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence 899999999999999999999 5666777776654
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=194.99 Aligned_cols=178 Identities=20% Similarity=0.256 Sum_probs=134.9
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
+.|...+.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+ ....++.... .+|.|.+++.+
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~ 75 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTY--SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRK 75 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEE--ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGG
T ss_pred ceEEecCCCeEEEcCCCEEEEeEe--CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcc
Confidence 456677888999999999999999 47789999999987653 2234444443 28999999999
Q ss_pred CcEEEEEEEEeCce--eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeec
Q psy2145 252 DSGVYTCRAVNALG--QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAE 329 (808)
Q Consensus 252 D~G~Y~C~a~n~~g--~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 329 (808)
|+|.|+|.|.|..| .....+.|.|..++ .+...+....+.+
T Consensus 76 D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p-------------------------------------~~~~~~~~~~~~~ 118 (212)
T 1f97_A 76 DNGEYTCMVSEEGGQNYGEVSIHLTVLVPP-------------------------------------SKPTISVPSSVTI 118 (212)
T ss_dssp GCEEEEEEEEETTSSSEEEEEEEEEEEBCC-------------------------------------CCCEEECCSEEET
T ss_pred cCeEEEEEEEccCCCcccEEEEEEEEEcCC-------------------------------------CCcccCCccccCC
Confidence 99999999999877 55667777776533 2222223456889
Q ss_pred CCeEEEEEE-EeecCCCccEEEEEECCE-eccCCCc---------EEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2145 330 NQAAHFEAR-LIPVGDSKLKVTWLRNGV-PIQASNR---------VSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE 398 (808)
Q Consensus 330 G~~~~l~C~-~~~~g~p~~~v~W~~~g~-~l~~~~~---------~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 398 (808)
|+.+.|.|. + .+.|.+.+.|+++|. .+..... +..... ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 119 g~~~~l~C~~~--~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 194 (212)
T 1f97_A 119 GNRAVLTCSEH--DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPK--SGDLIFDPVTAFDSGEYYCQAQNGYGT 194 (212)
T ss_dssp TSCEEEEEECS--CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTT--TCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred CCeEEEEEEcc--cCcCCCEEEEEeCCcccccccccccccccCceeEecCC--CceEEEEecChhhCcEEEEEEccccCC
Confidence 999999999 5 789999999999999 8876433 222222 237999999999999999999999999
Q ss_pred eEEE--EEEEEE
Q psy2145 399 AVTS--STLFVE 408 (808)
Q Consensus 399 ~~~~--~~l~V~ 408 (808)
...+ +.|.|.
T Consensus 195 ~~~s~~~~l~V~ 206 (212)
T 1f97_A 195 AMRSEAAHMDAV 206 (212)
T ss_dssp CEECCCEEEEEE
T ss_pred ccccceEEEEEE
Confidence 8444 555555
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=194.63 Aligned_cols=160 Identities=14% Similarity=0.264 Sum_probs=125.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEe--cCC------------CCCeEEEe---eCcEEEEEECCCCCCCCEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP--LED------------SSRITTKH---DFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~--l~~------------~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y 577 (808)
.+.+|+++.|.|.+ .+.|.+.+.|+|++.. +.. ..++.... ..+..+|.|.+++.+|+|.|
T Consensus 6 ~~~~G~~v~L~C~~--~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 6 LGKKGDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEETTSCEEECCBC--SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEeCCCCEEEEEEE--cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 58899999999998 7899999999999863 211 12232221 23344799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
+|.|.|..| .+.|.|.... . .....+.+|+.++|.
T Consensus 84 ~C~~~~~~~----~~~l~V~~~~----------------------------------------~-~~~~~v~~g~~~~l~ 118 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFGLT----------------------------------------A-NSDTHLLQGQSLTLT 118 (184)
T ss_dssp EEEETTEEE----EEEEEEEEEE----------------------------------------E-SSCSEEETTCCEEEE
T ss_pred EEEEEcCCC----cEEEEEEEec----------------------------------------C-CCCceeecCCCEEEE
Confidence 999999765 4455555311 0 112357899999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCC
Q psy2145 658 CRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 658 C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~ 733 (808)
|.+ .|.|.|.|.|+++|..+. ... ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+.|.
T Consensus 119 C~~--~~~p~~~v~W~~~~~~~~--------~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 119 LES--PPGSSPSVQCRSPRGKNI--------QGG--KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp EEC--CTTCCCEEEEECTTSCEE--------EES--SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred EEc--CCCCCCEEEEEeCCCccc--------cCc--eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 999 789999999999986652 122 2899999999999999999999999999999999998764
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-22 Score=189.48 Aligned_cols=162 Identities=13% Similarity=0.143 Sum_probs=122.8
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..+|.|...+.. .+.+|++++|.|.+ .+ |.+.+.|+|+|... ....+ .|.|.+++.+|+|.|+|.
T Consensus 6 ~~~P~i~~~p~~--~v~~G~~v~L~C~~--~~-~~~~~~W~k~g~~~--------~~~~~--~L~i~~v~~~D~G~Y~C~ 70 (184)
T 2gi7_A 6 LPKPSLQALPSS--LVPLEKPVTLRCQG--PP-GVDLYRLEKLSSSR--------YQDQA--VLFIPAMKRSLAGRYRCS 70 (184)
T ss_dssp BCCCEEEEESCS--EEETTCCEEEEEEC--ST-TCSEEEEEETTTCC--------EESSS--EEEESSCCGGGCEEEEEE
T ss_pred CCCCeEEeCCCc--cccCCCcEEEEEeC--CC-CCCEEEEEECCccc--------cCccc--EEEECcCChhhCceEEEE
Confidence 346777766553 58999999999998 56 78899999998761 12223 799999999999999999
Q ss_pred EEeCCeeEE--EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 581 ATNALGEAV--TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 581 a~N~~G~~~--~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
|.|..|... ..+.|.|.... .+|.+.... ...+.+|+.++|.|
T Consensus 71 a~n~~g~~~~s~~~~l~V~~~~---------------------------------~~p~i~~~p--~~~v~~G~~v~l~C 115 (184)
T 2gi7_A 71 YQNGSLWSLPSDQLELVATGVF---------------------------------AKPSLSAQP--GPAVSSGGDVTLQC 115 (184)
T ss_dssp EEETTEEBCCCCCEEEEEESSS---------------------------------CCCEEEEEC--CCSSCCTTCEEEEE
T ss_pred EEcCCCccCCCCCEEEEecCcC---------------------------------CCCEEEeCC--CceecCCCcEEEEE
Confidence 999987433 34666664321 246665554 24688999999999
Q ss_pred EEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 659 RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 659 ~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+ .+.| +.+.|+|||..+....+.. .....|.|.++..+|+|.|+|.|.|..+.
T Consensus 116 ~~--~~~~-~~~~w~k~g~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 116 QT--RYGF-DQFALYKEGDPAPYKNPER----WYRASFPIITVTAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp EC--SSCC-CEEEEEECCCCTTSCCCCE----EEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred Ec--CCCC-cEEEEEECCCcCcceecCC----CceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence 97 5554 6999999999887533221 12347999999999999999999998753
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=193.81 Aligned_cols=174 Identities=17% Similarity=0.276 Sum_probs=130.3
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEEC--CEecC------------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPLE------------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|+++.|.|.+ .+.|.+.|.|+|. +..+. ...++......+..+|.|.+++.+|+|.|+|.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 11 SVALGQKATITCSG--DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEETTSCEEEEEEC--SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEeCCCCEEEEEEc--CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 68999999999999 7899999999982 22111 33577766677778999999999999999999
Q ss_pred EEeCCe---eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 581 ATNALG---EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 581 a~N~~G---~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
|.|..| .....+.|.|...+. .+|.+...... ..+.+|+.++|.
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~i~~~~~~-~~~~~g~~v~l~ 135 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQPN--------------------------------AAPSVTLFPPS-SEELKTNQATLV 135 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSCC--------------------------------BCCEEEEECCC-HHHHTTTEEEEE
T ss_pred eccCCcceeEEcCceEEEEeCCCC--------------------------------CCCeEEccCCC-cccccCCcEEEE
Confidence 999988 445557777774321 24666655543 345589999999
Q ss_pred EEEeeCCC-CC-eEEEEEECCEEccCCCcEE-EEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 658 CRVVPVGD-PT-MRFEWFVNGVELKMGSRFH-VQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 658 C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
|.+ .|. |+ +.|.|+|||..|..+.... .....+ .+.|.|.++..+|+|.|+|.|+|..|....++.
T Consensus 136 C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 136 CMI--NGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp EEE--EEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred EEe--eceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 999 564 44 5999999999997531110 000122 246999999999999999999999987776654
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-23 Score=201.35 Aligned_cols=180 Identities=19% Similarity=0.325 Sum_probs=133.4
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEec------------CCCCCeEEEeeCcEEEEEECCCC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL------------EDSSRITTKHDFGYVAMDLSHVR 570 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l------------~~~~~~~~~~~~~~~~L~I~~v~ 570 (808)
++.|..++..+ .+.+|+.+.|.|.+ .+.|.+.+.|+|++..+ ....++.... ..|.|.+++
T Consensus 4 ~~~i~~~~~~~-~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~ 76 (209)
T 1nbq_A 4 SVTVHSSEPEV-RIPENNPVKLSCAY--SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVT 76 (209)
T ss_dssp CCEEECSCSBC-CEETTCCCEEECEE--ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCC
T ss_pred eEEEEcCCCce-EEEcCCCEEEEEEE--eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCC
Confidence 34555555555 68999999999999 68899999999988652 2234554443 279999999
Q ss_pred CCCCEEEEEEEEeCCe--eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccc
Q psy2145 571 AEDEGIYICKATNALG--EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEI 648 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G--~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 648 (808)
.+|+|.|+|.|.|..| ..+..+.|.|...|.+. ... ....+
T Consensus 77 ~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~------------------------------------~~~-~~~~~ 119 (209)
T 1nbq_A 77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP------------------------------------TVN-IPSSA 119 (209)
T ss_dssp TTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCC------------------------------------CCC-CBSEE
T ss_pred HHHCcEEEEEEecCCCCccceEEEEEEEecCCcCC------------------------------------Ccc-cccce
Confidence 9999999999999866 44456677776654321 111 12357
Q ss_pred cCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-------EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-------HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
.+|+.+.|.|.+. .|.|.|.|.|+++|..+..+.+. .+........|.|.++..+|+|.|+|.|.|..|...
T Consensus 120 ~~g~~~~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 198 (209)
T 1nbq_A 120 TIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM 198 (209)
T ss_dssp ETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred ecCCEEEEEEeCC-CCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence 8899999999853 69999999999999988765431 111112335899999999999999999999999995
Q ss_pred EEEEEE
Q psy2145 722 SSTSLK 727 (808)
Q Consensus 722 ~s~~l~ 727 (808)
.+..+.
T Consensus 199 ~s~~v~ 204 (209)
T 1nbq_A 199 TSNAVR 204 (209)
T ss_dssp ECCCBC
T ss_pred ccccEE
Confidence 554433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=212.94 Aligned_cols=202 Identities=14% Similarity=0.083 Sum_probs=151.3
Q ss_pred cccceeeeccCCCchhhhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEE
Q psy2145 23 TSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI 102 (808)
Q Consensus 23 d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~ 102 (808)
+.|.|.|.+.+..... ....-..+.+...|..+ .+.+|++++|.|.+. +.|.+.+.|++++..+....+. .
T Consensus 136 ~~~~~~C~~~~~l~~l----~~~~c~~P~i~~~~~~~-~v~~G~~v~L~C~~~--g~p~p~i~W~~~~~~~~~~~~~--~ 206 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAHM----PNASCGVPTLKVQVPNA-SVDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMK--S 206 (347)
T ss_dssp GGGCCCCSSSSCSSCC----CCTTCCCCEEEEECCSS-CCBTTCCEEEEEEEE--CSSCCCCCEEESCCCSSEEECC--C
T ss_pred cccCCCCCCChHHhcC----CcccCCCCceeccCCce-EEeCCCcEEEEEEEe--cCCCCEEEEEcCCceeeccccc--c
Confidence 5789999987722111 11111245556667777 899999999999998 5788899999998765432211 1
Q ss_pred eeCCeEEEEEcccCcCCCe-eEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccC
Q psy2145 103 HDFGYVALDIIDTIPEDSG-TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181 (808)
Q Consensus 103 ~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (808)
......+|.|.+++.+|+| .|+|.|.|..|.....+.|.|.
T Consensus 207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~-------------------------------------- 248 (347)
T 2ifg_A 207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS-------------------------------------- 248 (347)
T ss_dssp CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB--------------------------------------
T ss_pred eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc--------------------------------------
Confidence 2345568999999999999 9999999999988777777663
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEec-------CceEEEEEccCCCCCcE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNN-------FGFVALDIMQCLPEDSG 254 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G 254 (808)
.+|.+ ....+.+|+.++|.|.+ .+.|.+.|.|+|+|..+..+........ ....+|.|.+++.+|+|
T Consensus 249 ~~P~i----~~~~~~~g~~v~l~C~~--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G 322 (347)
T 2ifg_A 249 FPASV----QLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322 (347)
T ss_dssp EEEEE----EECCCEESSSEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCE
T ss_pred CCCee----eeccCccCceEEEEEEe--eecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCc
Confidence 23443 11224579999999999 4678899999999999986655433211 12347999999999999
Q ss_pred EEEEEEEeCceeEEEEEEEEEee
Q psy2145 255 VYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 255 ~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
.|+|.|.|..|....++.|.|..
T Consensus 323 ~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 323 NYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEEEEEETTEEEEEEEEECSCC
T ss_pred eEEEEEecCCCceeeEEEEEecC
Confidence 99999999999999998888764
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=196.64 Aligned_cols=178 Identities=18% Similarity=0.259 Sum_probs=132.4
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCC--CceEEEEe----------------CCEEeec-----cCcEEEEe---eCCeEE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDS--NLKVEWFK----------------NGRPVTI-----GHRFRPIH---DFGYVA 109 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~----------------~g~~l~~-----~~r~~~~~---~~~~~~ 109 (808)
+..+ .+.+|++++|.|.+.+.... .+.|.|+| +|..+.. ..|+.+.. ..+..+
T Consensus 7 ~~~v-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 7 EQRI-EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp EEEE-EEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred CceE-EEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 4455 89999999999999852111 46999998 5554432 34555433 224558
Q ss_pred EEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
|.|.+++.+|+|.|+|.|.|..|.....+.|.|... |.+...
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~--------------------------------------p~~~~~ 127 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK--------------------------------------PSGTRC 127 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--------------------------------------CBSCEE
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC--------------------------------------CCCcee
Confidence 999999999999999999999998888888888643 222223
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--EEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 267 (808)
+....+.+|+.++|.|.+. .+.|.+.|.|++++ ..+...... ...++ +|.|.++..+|+|.|+|.|.|..|..
T Consensus 128 ~~~~~~~~g~~v~l~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~--~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~ 202 (214)
T 3jz7_A 128 FVDGSEEIGNDFKLKCEPK-EGSLPLQFEWQKLSDSQTMPTPWLA--EMTSP--VISVKNASSEYSGTYSCTVQNRVGSD 202 (214)
T ss_dssp EEESCCBTTCCEEEEEECS-BCCSSCEEEEEECSTTCCCCGGGGG--GTTSS--EEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred eeecceecCCcEEEEecCC-CCCCCCEEEEEECCCCCccCcccee--ccCCC--EEEEecCCHHHCEEEEEEEEcCCCcE
Confidence 3334478999999999984 38889999999954 444322211 11223 89999999999999999999999999
Q ss_pred EEEEEEEEee
Q psy2145 268 VTSGNLLVHS 277 (808)
Q Consensus 268 ~~~~~l~V~~ 277 (808)
..++.|.|..
T Consensus 203 ~~~~~l~V~~ 212 (214)
T 3jz7_A 203 QCMLRLDVVP 212 (214)
T ss_dssp EEEEEECCBC
T ss_pred EEEEEEEEeC
Confidence 9888888863
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=192.66 Aligned_cols=173 Identities=16% Similarity=0.230 Sum_probs=120.2
Q ss_pred cccCCCceEEEEEEeeCCCCCc---EEEEEECCEe-----------cCC------CCCeEEEe---eCcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTL---KVEWFRNEKP-----------LED------SSRITTKH---DFGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~---~v~W~k~g~~-----------l~~------~~~~~~~~---~~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.|.+ .|.|+|++.. +.. ..|+.... ..+..+|.|.+++.
T Consensus 15 ~v~~G~~v~L~C~v--~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 92 (226)
T 4f80_A 15 LAMVGEDADLPCHL--FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92 (226)
T ss_dssp EEETTSCEEEEEEE--ESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred EEEcCCcEEEEEEE--ECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence 57899999999999 454443 6999987632 211 12333322 23566899999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.|..|.....+.+.+...... +.. ...+.+|
T Consensus 93 ~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~---------------------------------~~~------~~~~~~g 133 (226)
T 4f80_A 93 SDSGKYLCYFQDGDFYEKALVELKVAALGSD---------------------------------LHV------DVKGYKD 133 (226)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEBCCCC---------------------------------CEE------EEEEEET
T ss_pred HHCeeEEEEEECCCcEEEEEEEEeeccceec---------------------------------ccc------eeeeccC
Confidence 9999999999999998877666655432211 111 1346789
Q ss_pred ceEEEEEEEeeCC-CCCeEEEEEECC-EEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 652 QSAHYDCRVVPVG-DPTMRFEWFVNG-VELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 652 ~~v~l~C~v~~~g-~P~p~i~W~~~g-~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
+.+.|.|.+ .| .|.|.|+|+|++ ..+........... +.+..+.+..+..+|+|.|+|.|+|.+|..+.++.|.|
T Consensus 134 ~~v~l~c~~--~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v 211 (226)
T 4f80_A 134 GGIHLECRS--TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211 (226)
T ss_dssp TEEEEEEEE--EEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECC
T ss_pred CceeeEEEe--ccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEE
Confidence 999999999 56 699999999965 44443333222222 33456667788899999999999999999999999988
Q ss_pred Ee
Q psy2145 729 KS 730 (808)
Q Consensus 729 ~~ 730 (808)
..
T Consensus 212 ~e 213 (226)
T 4f80_A 212 AD 213 (226)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-22 Score=195.71 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=131.0
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEE--EEEECCCCCCCCEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV--AMDLSHVRAEDEGIYI 578 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~ 578 (808)
..+|.|...+.. .+.+|++|+|.|.+ .+ |.+.|.|+|+|..+....+. ........ .|.|.+++.+|+|.|+
T Consensus 7 ~~~P~i~~~p~~--~v~~G~~vtL~C~~--~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~ 80 (218)
T 1uct_A 7 FPMPFISAKSSP--VIPLDGSVKIQCQA--IR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQ 80 (218)
T ss_dssp SCCCCEEESSCS--EEETTCCEEEEECC--CT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEE
T ss_pred CCCCEEEecCCC--ccCCCCCEEEEEEc--CC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEE
Confidence 346777766552 58999999999998 55 67899999999766432221 10111122 6999999999999999
Q ss_pred EEEEeCCeeEEE--EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEE
Q psy2145 579 CKATNALGEAVT--TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656 (808)
Q Consensus 579 C~a~N~~G~~~~--s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l 656 (808)
|.|.|..|.... .+.|.|.... .+|.+.... + ..+.+|+.++|
T Consensus 81 C~a~n~~~~~~~s~~~~l~V~~~~---------------------------------~~P~i~~~p-~-~~v~~G~~v~L 125 (218)
T 1uct_A 81 CQYRIGHYRFRYSDTLELVVTGLY---------------------------------GKPFLSADR-G-LVLMPGENISL 125 (218)
T ss_dssp EEEEETTTEEEECCCEEEEEECSS---------------------------------CCCEEEESS-C-SEECTTCCCEE
T ss_pred EEEEcCCCceeecCCEEEEEcCcc---------------------------------cCCEEEeCC-C-CccCCCCCEEE
Confidence 999998764443 3566665321 246665443 2 46889999999
Q ss_pred EEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc-----ceEEEEEEEEEeC
Q psy2145 657 DCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG-----EAVSSTSLKVKSK 731 (808)
Q Consensus 657 ~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-----~~~~s~~l~V~~~ 731 (808)
.|.+ .+.|.+.|.|+|||..+... . ........|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|.++
T Consensus 126 ~C~~--~~~~~~~~~W~k~g~~~~~~-~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 126 TCSS--AHIPFDRFSLAKEGELSLPQ-H---QSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp EEEC--SSSCCSEEEEEETTCSSCCS-E---EECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred EEeC--CCCCCCEEEEEECCCccccc-c---cCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 9976 68888999999999887642 1 1223346899999999999999999999742 3344577888765
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=188.53 Aligned_cols=171 Identities=19% Similarity=0.258 Sum_probs=129.7
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeE-EEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMK-VEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
...|.|...+....+.+|++++|.|.+ .+.|.+. |.|+|||..+.... .+|.|.+++.+|+|.|+|.
T Consensus 5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~--~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~ 72 (204)
T 3sgj_C 5 LPKAVVFLEPQWYRVLEKDSVTLKCQG--AYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQ 72 (204)
T ss_dssp -CBCEEEEESCCSEEETTCCEEEEEEC--CSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEE
T ss_pred CCCCeEEEcCCCeEEECCCCEEEEEcC--CCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEE
Confidence 356788888888899999999999999 5666654 99999999987653 2899999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
|.|. ..+..+.|.|.. +|.+...+ ...+.+|+.+.|.|.+
T Consensus 73 a~n~--~~s~~~~l~V~~-------------------------------------~p~~~~~~-~~~v~~G~~v~L~C~~ 112 (204)
T 3sgj_C 73 TQLS--TLSDPVQLEVHI-------------------------------------GWLLLQAP-RWVFKEEDPIHLRCHS 112 (204)
T ss_dssp ETTS--BCCCCEEEEEEC-------------------------------------SSEEEECS-CSEEETTCCEEEEEEE
T ss_pred eCCC--cccccEEEEEec-------------------------------------CceEecCC-ceeEeCCCcEEEEEEe
Confidence 9884 344566777764 23333322 2567899999999998
Q ss_pred eecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc-ceEEEEEEEEEeccc
Q psy2145 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG-EAVTSSTLFVESKAS 412 (808)
Q Consensus 340 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~ 412 (808)
. .+.|.+.|.|++||..+.. ....+ .|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|...+.
T Consensus 113 ~-~~~p~~~v~W~k~g~~~~~------~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 113 W-KNTALHKVTYLQNGKGRKY------FHHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp G-GGCCCEEEEEEETTEEEEE------EEECC--CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred c-CCCCCceEEEEECCcEeec------ccCCc--eEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 3 3446689999999988642 11222 699999999999999999999544 444468888886654
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=187.61 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=136.3
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-------------------CCceEEEecCceEEEEEcc
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-------------------GSRFTETNNFGFVALDIMQ 247 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-------------------~~~~~~~~~~~~~~L~I~~ 247 (808)
.+.+....+.+|++++|.|.. .+.+.+.|.|++++..... ..++.+..+ + +|.|.+
T Consensus 3 ~i~~~~~~v~~G~~v~L~C~~--~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~--~L~i~~ 77 (208)
T 3r4d_A 3 TIEAVPPQVAEDNNVLLLVHN--LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-G--SLLFQM 77 (208)
T ss_dssp EEEEESSEEETTCCEEEEEEC--CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT-S--CEEECS
T ss_pred cccCccceeecCCcEEEEEeC--CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC-C--eEEEcc
Confidence 345556778999999999997 5788889999997543221 123333222 2 699999
Q ss_pred CCCCCcEEEEEEEEeCc-eeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceE
Q psy2145 248 CLPEDSGVYTCRAVNAL-GQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIH 326 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 326 (808)
++.+|+|.|+|.+.|.. +.....+.|.|...+ ..|.+......
T Consensus 78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~p~i~~~~~~-- 121 (208)
T 3r4d_A 78 ITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV----------------------------------TQPFLQVTNTT-- 121 (208)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEEEEEECCC----------------------------------CCCEEEESCSS--
T ss_pred ccccCCeEEEEEEEcccCceeEEEEEEEeccCC----------------------------------CCCEEecCCce--
Confidence 99999999999999984 566677788886532 23455444333
Q ss_pred eecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE-EEE
Q psy2145 327 VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS-STL 405 (808)
Q Consensus 327 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l 405 (808)
+.+|+.+.|.|.+ .+.| +.|.|+++|..+..+.++.+..+++ +|.|.++..+|+|.|+|.|.|..|...+. +.|
T Consensus 122 ~~~g~~v~l~C~~--~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l 196 (208)
T 3r4d_A 122 VKELDSVTLTCLS--NDIG-ANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196 (208)
T ss_dssp CCTTCCEEEEEEC--SCTT-CEEEEEETTEECCCCSSEEEETTTT--EEEESSCCGGGCEEEEEEEECTTCCEECCCEEE
T ss_pred EeeCCCEEEEEEC--CCCC-CceEEEECCEeCCCCCCeEEcCCCC--EEEEeccCHHhCeEEEEEEecCCCcccCCceee
Confidence 8899999999998 6766 7999999999999888887766554 79999999999999999999999998764 777
Q ss_pred EEEec
Q psy2145 406 FVESK 410 (808)
Q Consensus 406 ~V~~~ 410 (808)
.|..+
T Consensus 197 ~v~~~ 201 (208)
T 3r4d_A 197 DIIFD 201 (208)
T ss_dssp CCC--
T ss_pred eEEeC
Confidence 76654
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=190.79 Aligned_cols=180 Identities=16% Similarity=0.256 Sum_probs=134.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEeeCCeEEEEEcccCcCCC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIHDFGYVALDIIDTIPEDS 120 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D~ 120 (808)
.|+.+ .+.+|++++|.|.+. +.|.+.|.||| ++..+. ...|+.+....+..+|.|.+++.+|+
T Consensus 6 ~~~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (213)
T 3mj8_L 6 QPPLV-SVALGQKATITCSGD--KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE 82 (213)
T ss_dssp CCSEE-EEETTSCEEEEEECS--STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred eCCcE-EEeCCCCEEEEEEcC--CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence 34466 899999999999998 57888999999 222111 23577777777888999999999999
Q ss_pred eeEEEEEEecCc---ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 121 GTYTCRAVNLVG---FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 121 G~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|.|+|.|.|..| .....+.|.|...+ ..+|.+...+....+.+
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~i~~~~~~~~~~~ 128 (213)
T 3mj8_L 83 ADYYCQSWDGTNSAWVFGSGTKVTVLGQP----------------------------------NAAPSVTLFPPSSEELK 128 (213)
T ss_dssp EEEEEEEEETTTTEEEEBCCEEEEEECSC----------------------------------CBCCEEEEECCCHHHHT
T ss_pred EEEEEEeccCCcceeEEcCceEEEEeCCC----------------------------------CCCCeEEccCCCccccc
Confidence 999999999887 34555677775321 35788888877777779
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCc---eEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFG---FVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
|+.++|.|.+.+...+++.|.|+|||..+..+... ....++. ...|.|.++..+|+|.|+|.|.|..+....++
T Consensus 129 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 129 TNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207 (213)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence 99999999996322333599999999998653111 0111111 12599999999999999999999987666554
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=183.80 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=124.2
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
+|.+...+... .+.+|+.+.|.|.+ .+.| .+.+.|+|+|..+..... .|.|.+++.+|+|.|+|.|
T Consensus 4 ~p~i~~~p~~~-~v~~G~~v~l~C~~--~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~ 70 (170)
T 3ry4_A 4 KAVLKLEPPWI-NVLQEDSVTLTCQG--ARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQT 70 (170)
T ss_dssp BCEEEEESCCS-EEETTCEEEEEEES--CCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEE
T ss_pred CCEEEeCCCCe-EEECCCcEEEEEEe--cCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEE
Confidence 35555555544 58899999999998 6776 678999999999976532 3667789999999999999
Q ss_pred EeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEe
Q psy2145 582 TNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVV 661 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~ 661 (808)
.|..++. .+.|.|... |.+... . ...+.+|+.+.|.|.+.
T Consensus 71 ~~~~~s~--~~~l~v~~~------------------------------------~~~~~~-~-~~~~~~g~~~~l~C~~~ 110 (170)
T 3ry4_A 71 GQTSLSD--PVHLTVLFE------------------------------------WLVLQT-P-HLEFQEGETIMLRCHSW 110 (170)
T ss_dssp TTSBCCC--CEEEEEECC------------------------------------SEEEEC-S-CSEECTTCCEEEEEEEG
T ss_pred eCCCceE--eEEEEEECC------------------------------------ceEecC-C-CceeecCCeEEEEEECC
Confidence 9865543 466666653 222221 1 24578899999999984
Q ss_pred eCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc-eEEEEEEEE
Q psy2145 662 PVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE-AVSSTSLKV 728 (808)
Q Consensus 662 ~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~s~~l~V 728 (808)
.|.|.+.|.|+|||..+... .....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 111 -~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 111 -KDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp -GGCCEEEEEEEETTEEEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred -CCCCCceEEEEECCeEcccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 46678999999999987532 12237999999999999999999999997 444566665
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=187.09 Aligned_cols=174 Identities=10% Similarity=0.068 Sum_probs=128.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.. .+.+|++|+|.|.+ .+ +.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.|
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 3p2t_A 3 LPKPTLWAEPGS-VISWGNSVTIWCQG--TL-EAREYRLDKEESPAPWDRQN-PLEPKNKARFSIPSMTEDYAGRYRCYY 77 (196)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEEC--CT-TCCEEEEEETTSCSCSEEEC-CCSSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCEEEccCCC-cCCCCCcEEEEeeC--CC-CCCEEEEEECCCCCcccccc-cccCCceEEEEeccCCcccCceEEEEE
Confidence 347888888877 88999999999998 45 67899999999887542211 111123448999999999999999999
Q ss_pred EeCcee--EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 261 VNALGQ--AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 261 ~n~~g~--~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
.|..|. .+..+.|.|.... .+|.+...+. ..+.+|+.++|.|.
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~----------------------------------~~p~~~~~~~-~~v~~G~~v~L~C~ 122 (196)
T 3p2t_A 78 RSPVGWSQPSDPLELVMTGAY----------------------------------SKPTLSALPS-PLVTSGKSVTLLCQ 122 (196)
T ss_dssp EETTEEBCCCCCEEEEEECSS----------------------------------CCCEEEEESC-SEECTTCCEEEEEE
T ss_pred eCCCcccCCCccEEEEecCCC----------------------------------CCCEEEeCCc-ceecCCCeEEEEEe
Confidence 999883 3445677775421 2455554443 36789999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcEEE-EeeCcEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRVST-MHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
+ .+ +.+.+.|+|+|..+........ ........|.|.++..+|+|.|+|.|.|..+
T Consensus 123 ~--~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 123 S--RS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp E--EE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred c--CC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 8 45 4568999999987765432211 1122334799999999999999999999887
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=181.08 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=128.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeE-EEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMK-VEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+....+.+|++++|.|.+ .+.|.+. +.|+|+|..+.... + +|.|.+++.+|+|.|+|.
T Consensus 5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~--~~~p~~~~~~W~~~~~~~~~~~--------~--~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 5 LPKAVVFLEPQWYSVLEKDSVTLKCQG--AYSPEDNSTQWFHNESLISSQA--------S--SYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CCCCEEEEESCCSEEETTCCEEEEEEC--CCBTTBCCCEEEETTEEEESSC--------S--EEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEEcCCceeeeCCCcEEEEeeC--CCCCCCcceEEEECCEEccCCc--------e--EEEEeCCCcccCEEEEEE
Confidence 457889999988899999999999999 4666555 89999999886421 2 799999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 260 AVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
+.|..+ +..+.|.|.. ++.+... ....+.+|+.+.|.|.+
T Consensus 73 ~~n~~~--s~~~~l~V~~-------------------------------------~~~~~~~-~~~~~~~g~~~~l~C~~ 112 (175)
T 1fnl_A 73 TNLSTL--SDPVQLEVHI-------------------------------------GWLLLQA-PRWVFKEEDPIHLRCHS 112 (175)
T ss_dssp CSSSCC--CCCEEEEEEC-------------------------------------SSEEEEC-SCSEEETTCCEEEEEEE
T ss_pred eeCCcc--cccEEEEEeC-------------------------------------CCceeeC-CCceecCCCCEEEEEEc
Confidence 998554 4456677753 2222222 33567899999999998
Q ss_pred eecCCCc-cEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE-EEEEEEEEe
Q psy2145 340 IPVGDSK-LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV-TSSTLFVES 409 (808)
Q Consensus 340 ~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~ 409 (808)
.+.+. +.+.|+|+|..+... ... ..|.|.++..+|+|.|+|.|.|..|... ..+.|.|.+
T Consensus 113 --~~~~~~~~~~W~k~g~~~~~~------~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 113 --WKNTALHKVTYLQNGKDRKYF------HHN--SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp --CTTCCCEEEEEEETTEEEEEE------EEC--CCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred --CCCCCceEEEEEECCeEccCC------CCC--CEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 56554 599999999987421 122 2699999999999999999999776543 347777764
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=185.98 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=127.9
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.+|.|...+.. .+.+|++|+|.|.+ .+ +.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.|
T Consensus 3 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 76 (188)
T 1oll_A 3 PKPFIWAEPHF--MVPKEKQVTICCQG--NY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 76 (188)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeecCC--cCCCCCCEEEEEec--CC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEe
Confidence 36777766554 58999999999997 44 45789999999876421000 001123347999999999999999999
Q ss_pred EeCCeeE--EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 582 TNALGEA--VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 582 ~N~~G~~--~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|..|.. +..+.|.|.... .+|.+.... + ..+.+|+.++|.|.
T Consensus 77 ~~~~~~~~~s~~~~l~V~~~~---------------------------------~~p~i~~~p-~-~~v~~G~~v~L~C~ 121 (188)
T 1oll_A 77 RVGELWSEPSNLLDLVVTEMY---------------------------------DTPTLSVHP-G-PEVISGEKVTFYCR 121 (188)
T ss_dssp EETTEECCCCCCEEEEEESCS---------------------------------CCCEEEEES-C-SEEETTCEEEEEEE
T ss_pred cCCCCCCCCCCceEEEecccC---------------------------------CCCeEEECC-C-CccccCCEEEEEEE
Confidence 9987643 344666665321 246665443 2 45889999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCc---ceEEEEEEEEE
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAG---EAVSSTSLKVK 729 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G---~~~~s~~l~V~ 729 (808)
+ .+ +.+.|.|+|||..+.. ..........|.|.++..+|+|.|+|.|.|... ..+..+.|.|.
T Consensus 122 ~--~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 122 L--DT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp C--SS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred c--CC-CCCEEEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 8 44 4579999999987654 112234456899999999999999999999752 23345667665
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=186.34 Aligned_cols=175 Identities=9% Similarity=0.021 Sum_probs=118.3
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.. .+.+|++|+|.|.+ .+.|. .+.|+|+|..+....+. .........|.|.+++.+|+|.|+|.|
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~--~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 2d3v_A 3 LSKATLWAEPGS-VISRGNSVTIRCQG--TLEAQ-EYRLVKEGSPEPWDTQN-PLEPKNKARFSIPSMTEHHAGRYRCYY 77 (196)
T ss_dssp CCBCEEEEESCS-EEETTCCEEEEEEC--CTTCC-EEEEEETTCSSCSEEEC-CCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCEEEeCCCC-cccCCCeEEEEEeC--CCCCc-EEEEEECCCCCCccccc-ccCCccccEEEeccCChhHCeEEEEEE
Confidence 357888888874 78899999999998 45555 99999999887542211 011233458999999999999999999
Q ss_pred EeCceeEE--EEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 261 VNALGQAV--TSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 261 ~n~~g~~~--~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
.|..|... ..+.|.|.... .+|.+...+ ...+.+|+.++|.|.
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~----------------------------------~~p~i~~~~-~~~v~~G~~v~L~C~ 122 (196)
T 2d3v_A 78 YSPAGWSEPSDPLELVVTGFY----------------------------------NKPTLSALP-SPVVTSGENVTLQCG 122 (196)
T ss_dssp EETTEECBCCCCEEEEEECSS----------------------------------CCCEEEC------------CEEEEE
T ss_pred eCCCCcCCcCccEEEEecCCC----------------------------------CCCeEEccC-CccccCCCcEEEEEE
Confidence 99887543 45677776421 245554443 356889999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcE-EEEee-CcEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRV-STMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGE 398 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 398 (808)
+ .+.| +.+.|+|+|..+...... ..... .....|.|.++..+|+|.|+|.|.|..+.
T Consensus 123 ~--~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 123 S--RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp E--SSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred c--CCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 8 7888 899999999887532211 11111 22358999999999999999999998653
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-21 Score=187.61 Aligned_cols=174 Identities=21% Similarity=0.332 Sum_probs=127.6
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|+++.|.|.+ .+.|.+.|.|+|++ ..+ ....++.....++...|.|.+++.+|+|.|+|.
T Consensus 12 ~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (213)
T 3d9a_L 12 SVTPGNSVSLSCRA--SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ 89 (213)
T ss_dssp EECTTCCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEeCCCcEEEEEEC--CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence 58999999999999 78988999999853 221 123577777777778999999999999999999
Q ss_pred EEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 581 ATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 581 a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
|.|..|.... .+.|.|.... .+|.+...... ..+.+|+.+.|.|.
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~---------------------------------~~p~v~~~~~~-~~~~~g~~~~l~C~ 135 (213)
T 3d9a_L 90 QSNSWPYTFGGGTKLEIKRAD---------------------------------AAPTVSIFPPS-SEQLTSGGASVVCF 135 (213)
T ss_dssp ECSSSSCEECCCEEEEECCCC---------------------------------BCCEEEEECCC-HHHHHTTEEEEEEE
T ss_pred eecCCcceeCCCEEEEEecCC---------------------------------CCceeEeECCC-hhhcCCCcEEEEEE
Confidence 9999875433 3466665321 13666554433 23457999999999
Q ss_pred EeeCC-CCCe-EEEEEECCEEccCCCcEE--EEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 660 VVPVG-DPTM-RFEWFVNGVELKMGSRFH--VQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 660 v~~~g-~P~p-~i~W~~~g~~l~~~~~~~--~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
+ .| .|.+ .|.|+|||.++..+.... ... .++ .+.|.|.++..+|+|.|+|.|.|..........+
T Consensus 136 ~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 136 L--NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp E--EEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred E--eeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 9 55 6665 999999999987651111 100 111 3489999999999999999999998775444333
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-22 Score=192.22 Aligned_cols=162 Identities=14% Similarity=0.262 Sum_probs=112.7
Q ss_pred ccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECC-CCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSH-VRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
..+|+.+.|.|.+ .+ |. .|+|+|||..|..+. ++ +|.|.+ ++.+|+|.|+|.|.|..|.....+.+
T Consensus 11 ~~~G~~v~L~C~~--~~-~~-~i~W~k~g~~l~~~~-------~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 11 SISGTSVELTCPL--DS-DE-NLKWEKNGQELPQKH-------DK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EEETTEEEEECSS--CC-CT-TCEEEETTEEECSCC-------CS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EeCCcEEEEEEeC--CC-CC-ceEEEECCEECCCCC-------CC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 4679999999998 55 43 399999999997642 12 699999 99999999999999999986666655
Q ss_pred EEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEe------ecCCCccccCCceEEEEEEEeeCCCCCe
Q psy2145 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQ------LLTGTSEIMEGQSAHYDCRVVPVGDPTM 668 (808)
Q Consensus 595 ~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~------~~~~~~~v~~G~~v~l~C~v~~~g~P~p 668 (808)
.|........... .+..+ ....+|.+.. .+.....+.+|+++.|.|.+ |.|
T Consensus 78 ~v~~~~~~~~~~~------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-----p~p 134 (186)
T 1jbj_A 78 RVGSADDAKKDAA------KKDDA------------KKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-----TDK 134 (186)
T ss_dssp CCCSCCCCCCCCC------CCCCC------------SCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-----SCS
T ss_pred EEecccccccccc------ccccc------------ccCCccccccccccccccccceecCCCCeEEEEeeC-----CCC
Confidence 5543221100000 00000 0000010000 00001235699999999965 789
Q ss_pred EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 669 RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 669 ~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
.|.|+|||..|..... ....|.|.++..+|+|.|+|.|.|..|+.
T Consensus 135 ~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 135 TIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred eEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 9999999999975432 23379999999999999999999999987
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=187.62 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=126.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+.. .+.+|++|+|.|.+ .+.|. .+.|+|+|..+....+. ......+ .|.|.+++.+|+|.|+|.
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~--~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~ 76 (198)
T 1ugn_A 3 LPKPTLWAEPGS-VITQGSPVTLRCQG--GQETQ-EYRLYREKKTAPWITRIPQELVKKG--QFPIPSITWEHTGRYRCY 76 (198)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEEC--CTTCC-CEEEEESSSCCHHHHTSCHHHHTTT--EEEESSCCGGGCEEEEEE
T ss_pred CCCCeEeccCCC-cccCCCcEEEEEEe--cCCCc-EEEEEECCccccccccccccCCccc--EEEECCCCHHHCeEEEEE
Confidence 357888888864 78999999999998 45555 69999999887421111 0011122 799999999999999999
Q ss_pred EEeCc-e--eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEE
Q psy2145 260 AVNAL-G--QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFE 336 (808)
Q Consensus 260 a~n~~-g--~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~ 336 (808)
|.|.. | ..+..+.|.|...+ .+|.+...+ ...+.+|+.++|.
T Consensus 77 a~n~~~g~~~~s~~~~l~V~~~~----------------------------------~~p~i~~~~-~~~v~~G~~v~L~ 121 (198)
T 1ugn_A 77 YGSDTAGRSESSDPLELVVTGAY----------------------------------IKPTLSAQP-SPVVNSGGNVTLQ 121 (198)
T ss_dssp EEETTTEECCCCCCEEEEEECSS----------------------------------CCCEEEEES-CSEEETTCCEEEE
T ss_pred EECCCCCcccCCccEEEEEcccc----------------------------------cCCccccCC-ccccCCCCcEEEE
Confidence 99987 6 33456778776421 234444332 3578899999999
Q ss_pred EEEeecCCCccEEEEEECCEeccCCCcE-EEEe-eCcEEEEEEccCCCCCCeEEEEEEEcCCcce-----EEEEEEEEE
Q psy2145 337 ARLIPVGDSKLKVTWLRNGVPIQASNRV-STMH-DFGYVALNFKYTYPEDSGTYTCRAVNELGEA-----VTSSTLFVE 408 (808)
Q Consensus 337 C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~ 408 (808)
|.+ .+. .+.+.|+|+|..+...... .... .+....|.|.++..+|+|.|+|.|.|..+.. +..+.|.|.
T Consensus 122 C~~--~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 122 CDS--QVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EEC--SSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred Eec--CCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 998 666 7899999999887543221 1111 2234589999999999999999999987632 223556554
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=194.28 Aligned_cols=183 Identities=17% Similarity=0.263 Sum_probs=128.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEee-CCCCCceEEEEeCCEEee------------------------------ccCcEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEP-VTDSNLKVEWFKNGRPVT------------------------------IGHRFRP 101 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~-~~~p~~~v~W~~~g~~l~------------------------------~~~r~~~ 101 (808)
...+..+ .+.+|++++|.|.+.+ .+.|.+.|.|+|++..+. ...|+.+
T Consensus 6 ~~~~~~v-~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 6 RTTHTEV-EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp ECSCSEE-EECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EcCCCce-EEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 3344466 8999999999999984 126778999999875421 1223332
Q ss_pred EeeCCeEEEEEcccCcCCCeeEEEEEEecCcce-----EEEEEEEEecCCCccccccccccceeeeeecccccccccccc
Q psy2145 102 IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFA-----EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176 (808)
Q Consensus 102 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (808)
.. .+..+|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|...+
T Consensus 85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------ 133 (250)
T 2fbo_J 85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT------------------------------ 133 (250)
T ss_dssp SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS------------------------------
T ss_pred cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC------------------------------
Confidence 22 133479999999999999999999977643 457777775421
Q ss_pred ccccCCCCeEEe-ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE----------------------
Q psy2145 177 EETTTQAPIFTT-SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT---------------------- 233 (808)
Q Consensus 177 ~~~~~~~P~~~~-~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~---------------------- 233 (808)
.+|.+.. .+..+.+.+|++++|.|.+ .+.|.+.|.|+|++..+.......
T Consensus 134 -----~~~~~~~~~~~~~~v~~g~~v~L~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (250)
T 2fbo_J 134 -----PSNNVHVSTAEVVQVDEGNDITMTCPC--TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGR 206 (250)
T ss_dssp -----CCSCCEECCCSEEECCTTCCEEECCCE--ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTS
T ss_pred -----CCCeEEEecCceEEecCCCcEEEEEEe--cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecc
Confidence 1333333 3446778899999999999 577888999999998886532110
Q ss_pred EEecCceEEEEEccCCCCCcEEEEEEEEe---CceeEEEEEEEEE
Q psy2145 234 ETNNFGFVALDIMQCLPEDSGVYTCRAVN---ALGQAVTSGNLLV 275 (808)
Q Consensus 234 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---~~g~~~~~~~l~V 275 (808)
.... +..+|.|.+++.+|+|.|+|.|.| ..|....++.|.|
T Consensus 207 ~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 207 ASFS-GARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp EEEE-TTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cccC-CccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence 0000 112899999999999999999999 4455555555543
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=182.91 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=124.4
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCC-ceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~-~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
+.+...|..+ .+.+|++++|.|.+.+ .|. ..+.|||+|..+..+ ..+|.|.+++.+|+|.|+|.+.
T Consensus 5 P~i~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~ 71 (176)
T 1f2q_A 5 PKVSLNPPWN-RIFKGENVTLTCNGNN--FFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQ 71 (176)
T ss_dssp CCCEEESSCS-EEETTCCEEEECCTTC--C----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECT
T ss_pred CEEEcCCCCc-ceecCCcEEEEEeCCC--CCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcC
Confidence 3344567776 8999999999999984 454 469999999987642 2279999999999999999998
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
|..+. ..+.|.|.. ++.+. .+....+.+|+.++|.|.+.
T Consensus 72 ~~~~s--~~~~l~V~~--------------------------------------~~~~~-~~~~~~~~~g~~~~l~C~~~ 110 (176)
T 1f2q_A 72 QVNES--EPVYLEVFS--------------------------------------DWLLL-QASAEVVMEGQPLFLRCHGW 110 (176)
T ss_dssp TSSCC--CCEEEEEEC--------------------------------------SSEEE-EESCSEEETTSCEEEEEEEG
T ss_pred Ccccc--ccEEEEEeC--------------------------------------cceee-cCCcceeeCCCCEEEEEEec
Confidence 86554 345565541 22222 33345688999999999994
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCcee-EEEEEEEEEeeCC
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQ-AVTSGNLLVHSKK 279 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~ 279 (808)
.+.|.+.+.|+|+|..+..... + ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus 111 -~~~p~~~~~W~~~g~~~~~~~~------~--~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p 173 (176)
T 1f2q_A 111 -RNWDVYKVIYYKDGEALKYWYE------N--HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173 (176)
T ss_dssp -GGCCEEEEEEEETTEECCSCCC------S--SEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred -CCCCceEEEEEECCEEEeeecC------C--CeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence 2567789999999998853221 1 27999999999999999999996554 4456888887644
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=184.36 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=119.6
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee----------ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT----------IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~----------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
.+.+|++++|.|...+...|.+.|.|+|++..|. .+.|+.+..+ + +|.|.+++.+|+|.|+|.|.|.
T Consensus 7 ~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~-g--sL~I~~v~~~D~G~Y~C~~~n~ 83 (176)
T 1hng_A 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN-G--DLKIKNLTRDDSGTYNVTVYST 83 (176)
T ss_dssp EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT-S--CEEESSCCGGGCEEEEEEEEET
T ss_pred EEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC-C--cEEEcccccccCEEEEEEEEeC
Confidence 6789999999995432235677999999997663 3456666433 3 4999999999999999999999
Q ss_pred Ccce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 131 VGFA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 131 ~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
.|.. ...+.|.|... ...|.+.. .+..++|.|.+
T Consensus 84 ~g~~~~~~~~~l~V~~~-----------------------------------~~~p~i~~--------~~~~v~L~C~~- 119 (176)
T 1hng_A 84 NGTRILNKALDLRILEM-----------------------------------VSKPMIYW--------ECSNATLTCEV- 119 (176)
T ss_dssp TCCEEEEEEEEEEEECC-----------------------------------CCCCEEEE--------ETTTTEEEEEC-
T ss_pred CCCEEEEEEEEEEEeCC-----------------------------------CCCCEEEe--------cCCcEEEEEEe-
Confidence 9986 55667777532 12344432 24569999999
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
.+.|.+.|.|+|||.++..+.+ +.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus 120 -~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 120 -LEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp -SSCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred -cCCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 6888899999999999875543 334477799999999999999999888877654
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=190.51 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=124.4
Q ss_pred cccCCCceEEEEEEeeCCCCCc---EEEEEECCEecCCCC------------------CeEEEe---eCcEEEEEECCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTL---KVEWFRNEKPLEDSS------------------RITTKH---DFGYVAMDLSHVR 570 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~---~v~W~k~g~~l~~~~------------------~~~~~~---~~~~~~L~I~~v~ 570 (808)
++.+|+++.|.|.+ .+.|.+ .|+|+|++..+.... ++.... ..+..+|.|.+++
T Consensus 10 tv~~G~~v~L~C~v--~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 87 (218)
T 4frw_A 10 TVVLGQDAKLPCFY--RGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV 87 (218)
T ss_dssp EEETTSCEEECCEE--CCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCC
T ss_pred EEEcCCCEEEEEEE--EcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeecc
Confidence 68899999999999 677765 489999886554211 111111 1123469999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEE-EEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 571 AEDEGIYICKATNALGEAVTT-ASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~~s-~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
.+|+|.|.|.+.|..+..... ..+.+... |...........+.
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~ 131 (218)
T 4frw_A 88 QADEGEYECRVSTFPAGSFQARLRLRVLVP------------------------------------PLPSLNPGPALEEG 131 (218)
T ss_dssp GGGCEEEEEEEEEETTEEEEEEEEEEEEBC------------------------------------CCCEEEECSCEETT
T ss_pred HHHCCceeEEEEeccCceeeeEEEEEEeee------------------------------------ccceeeeeeeeeee
Confidence 999999999999876654444 33333322 11112222234678
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
+|+.+.|.|.+ .|.|+|.|.|+++|..+..+..+.... ....+.|.|.++..+|+|.|+|.|+|.+|..+..++|.|
T Consensus 132 ~~~~~~~~c~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v 209 (218)
T 4frw_A 132 QGLTLAASCTA--EGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 209 (218)
T ss_dssp CCSEEEEEEEE--EEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred eccccceeeec--cCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence 89999999999 799999999999998876544332210 011357999999999999999999999998887777665
Q ss_pred E
Q psy2145 729 K 729 (808)
Q Consensus 729 ~ 729 (808)
.
T Consensus 210 ~ 210 (218)
T 4frw_A 210 H 210 (218)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=187.60 Aligned_cols=179 Identities=17% Similarity=0.244 Sum_probs=127.9
Q ss_pred cccCCCceEEEEEEeeCCCCC-----cEEEEEECCEec---------CC------CCCeEEEee---CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPT-----LKVEWFRNEKPL---------ED------SSRITTKHD---FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~-----~~v~W~k~g~~l---------~~------~~~~~~~~~---~~~~~L~I~~v~~ 571 (808)
.+.+|+.+.|.|.+ .+.|. +.|.|+|++..+ .. ..+..+..+ .+..+|.|.+++.
T Consensus 12 ~~~~G~~v~L~C~~--~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 89 (222)
T 3sbw_C 12 VVEYGSNMTIECKF--PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKL 89 (222)
T ss_dssp EEETTSCEEEEEEC--CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCG
T ss_pred EEEcCCcEEEEeEe--cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccc
Confidence 57899999999998 66663 489999975322 11 134443322 2456899999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.| .|.....+.|.|...+. .|..... ..+.+|
T Consensus 90 ~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~---------------------------------~~~~~~~----~~~~~g 131 (222)
T 3sbw_C 90 QDAGVYRCMISY-GGADYKRITVKVNAPYN---------------------------------KINQRIL----VVDPVT 131 (222)
T ss_dssp GGCEEEEEEEES-SSEEEEEEEEEEEBCCC---------------------------------CCEEEEE----EEETTT
T ss_pred ccCeEEEEEEEe-CCCceeEEEEEEECCCC---------------------------------CCCceee----eeecCC
Confidence 999999999999 67777888888885432 1222211 146789
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEE--EEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 652 QSAHYDCRVVPVGDPTMRFEWFVN-GVELKMGSRFHV--QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 652 ~~v~l~C~v~~~g~P~p~i~W~~~-g~~l~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
+.+.|.|.+ .|.|.|.|.|+++ |..+....+... ..++....+.+..+..+|+|.|+|.|.|.+|....++.|.|
T Consensus 132 ~~v~L~C~~--~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v 209 (222)
T 3sbw_C 132 SEHELTCQA--EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209 (222)
T ss_dssp TEEEEEEEE--EEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred CcEEEEEEe--cCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEe
Confidence 999999999 7899999999999 777665433322 22233344444456679999999999999999999999999
Q ss_pred EeCCCcc
Q psy2145 729 KSKSDIV 735 (808)
Q Consensus 729 ~~~p~~~ 735 (808)
..+|...
T Consensus 210 ~~~p~~~ 216 (222)
T 3sbw_C 210 PELPLAH 216 (222)
T ss_dssp CCC----
T ss_pred cCCcccC
Confidence 8776543
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=184.11 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=116.9
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
+...|. . .+.+|++++|.|.+. + +.+.+.|+|+|... ..+. ..|.|.+++.+|+|.|+|.|.|..
T Consensus 11 i~~~p~-~-~v~~G~~v~L~C~~~--~-~~~~~~W~k~g~~~--------~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~ 75 (184)
T 2gi7_A 11 LQALPS-S-LVPLEKPVTLRCQGP--P-GVDLYRLEKLSSSR--------YQDQ--AVLFIPAMKRSLAGRYRCSYQNGS 75 (184)
T ss_dssp EEEESC-S-EEETTCCEEEEEECS--T-TCSEEEEEETTTCC--------EESS--SEEEESSCCGGGCEEEEEEEEETT
T ss_pred EEeCCC-c-cccCCCcEEEEEeCC--C-CCCEEEEEECCccc--------cCcc--cEEEECcCChhhCceEEEEEEcCC
Confidence 334444 4 789999999999987 3 66799999998751 1122 279999999999999999999987
Q ss_pred cce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEee
Q psy2145 132 GFA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIP 209 (808)
Q Consensus 132 g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~ 209 (808)
|.. +..+.|.|... ..+|.+...+ +..+.+|++++|.|.+
T Consensus 76 g~~~~s~~~~l~V~~~-----------------------------------~~~p~i~~~p-~~~v~~G~~v~l~C~~-- 117 (184)
T 2gi7_A 76 LWSLPSDQLELVATGV-----------------------------------FAKPSLSAQP-GPAVSSGGDVTLQCQT-- 117 (184)
T ss_dssp EEBCCCCCEEEEEESS-----------------------------------SCCCEEEEEC-CCSSCCTTCEEEEEEC--
T ss_pred CccCCCCCEEEEecCc-----------------------------------CCCCEEEeCC-CceecCCCcEEEEEEc--
Confidence 632 34466666421 2357777666 5678899999999997
Q ss_pred cCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 210 VSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 210 ~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
.+. .+.+.|+|+|..+........ ....|.|.+++.+|+|.|+|.|.|..+
T Consensus 118 ~~~-~~~~~w~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 118 RYG-FDQFALYKEGDPAPYKNPERW----YRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp SSC-CCEEEEEECCCCTTSCCCCEE----EEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred CCC-CcEEEEEECCCcCcceecCCC----ceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 344 469999999998865332211 122689999999999999999999754
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=183.40 Aligned_cols=159 Identities=17% Similarity=0.221 Sum_probs=123.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec--------------cCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI--------------GHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~--------------~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
.+.+|++++|.|.+. +.|.+.+.|+|++..+.. ..|+.... ..+..+|.|.+++.+|+|.|
T Consensus 6 ~~~~G~~v~L~C~~~--~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 6 LGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEETTSCEEECCBCS--SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEeCCCCEEEEEEEc--CCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 788999999999998 578889999999863221 23444332 33455799999999999999
Q ss_pred EEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEE
Q psy2145 124 TCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHF 203 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L 203 (808)
+|.+.|..| .+.|.|.. + ..+....+.+|++++|
T Consensus 84 ~C~~~~~~~----~~~l~V~~-----------------------------------------~-~~~~~~~v~~g~~~~l 117 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFG-----------------------------------------L-TANSDTHLLQGQSLTL 117 (184)
T ss_dssp EEEETTEEE----EEEEEEEE-----------------------------------------E-EESSCSEEETTCCEEE
T ss_pred EEEEEcCCC----cEEEEEEE-----------------------------------------e-cCCCCceeecCCCEEE
Confidence 999987644 45565541 1 1233456789999999
Q ss_pred EEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEeeCC
Q psy2145 204 ECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKK 279 (808)
Q Consensus 204 ~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 279 (808)
.|.+ .+.|.+.+.|+++|..+.. ..+ .|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 118 ~C~~--~~~p~~~v~W~~~~~~~~~--------~~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 118 TLES--PPGSSPSVQCRSPRGKNIQ--------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp EEEC--CTTCCCEEEEECTTSCEEE--------ESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEc--CCCCCCEEEEEeCCCcccc--------Cce--EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence 9999 5779999999998765521 112 79999999999999999999999999999999998643
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=186.27 Aligned_cols=173 Identities=19% Similarity=0.359 Sum_probs=122.7
Q ss_pred cccCCCceEEEEEEeeCCC-CCcEEEEEECC--Ee-------------c-C--CCCCeEEEeeCcEEEEEECCCCCCCCE
Q psy2145 515 AVEEGKNAHFSCRLIPVGD-PTLKVEWFRNE--KP-------------L-E--DSSRITTKHDFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~-P~~~v~W~k~g--~~-------------l-~--~~~~~~~~~~~~~~~L~I~~v~~~D~G 575 (808)
.+.+|+++.|.|.+ .+. |.+.|.|+|.. .. . . ...|+.+....+..+|.|.+++.+|+|
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 11 SFSLGASAKLTCTL--NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEETTSCEEEEEEE--CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EECCCCcEEEEEEC--CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 68999999999999 777 89999999931 10 0 0 124677666677788999999999999
Q ss_pred EEEEEEEeCCe-----eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 576 IYICKATNALG-----EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 576 ~Y~C~a~N~~G-----~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
.|.|.|.|..| .....+.|.|...+. .+|.+...... ..+..
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~~~~~~~~-~~~~~ 135 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPK--------------------------------STPTLTVFPPS-SEELK 135 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCCC--------------------------------BCCEEEEECCC-HHHHH
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCCC--------------------------------CCceEEeeCCC-ccccc
Confidence 99999999876 333346777764321 23666554433 34567
Q ss_pred CceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcE--EEEEeCCE---EEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 651 GQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRF--HVQHDFGY---VTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 651 G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~--~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
|+.++|.|.+ .| .|.+ .|.|+|||.+|..+... ....++.+ +.|.|.....+|+|.|+|.|.|..|....+
T Consensus 136 ~~~v~L~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 213 (218)
T 3s96_B 136 ENKATLVCLI--SNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS 213 (218)
T ss_dssp TTEEEEEEEE--EEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred CCcEEEEEEE--CcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence 8999999999 56 5777 99999999999763221 11112222 348888888889999999999999877655
Q ss_pred E
Q psy2145 724 T 724 (808)
Q Consensus 724 ~ 724 (808)
+
T Consensus 214 ~ 214 (218)
T 3s96_B 214 L 214 (218)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=187.43 Aligned_cols=184 Identities=18% Similarity=0.260 Sum_probs=134.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee-----------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT-----------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+.+.+.+.|.|||+ +..+. ...|+.+..+ .+..+|.
T Consensus 4 l~~p~~~-~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (256)
T 1nqb_A 4 LQQSGAE-LVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ 82 (256)
T ss_dssp EEECCCE-EECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EECCCCe-eecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence 4567777 89999999999999842113679999994 32221 1357777654 4667999
Q ss_pred EcccCcCCCeeEEEEEEecCcc-----eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGF-----AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
|.+++.+|+|.|+|.|.|..|. ....+.|.|. .+|.+
T Consensus 83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~--------------------------------------~~~~v 124 (256)
T 1nqb_A 83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS--------------------------------------SDIEL 124 (256)
T ss_dssp ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC--------------------------------------CCCCE
T ss_pred ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec--------------------------------------ccccE
Confidence 9999999999999999998663 1123455553 34566
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCe-----EEEEee--CCEEcc------------CCCceEEEecCceEEEEEcc
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTM-----KVEWFH--NNVPIK------------SGSRFTETNNFGFVALDIMQ 247 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-----~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~ 247 (808)
...+..+.+.+|++++|.|.+ .+.|.+ .|.|+| +|..+. ...++.........+|.|.+
T Consensus 125 ~~~p~~~~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 202 (256)
T 1nqb_A 125 TQTPLSLPVSLGDQASISCRS--SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 202 (256)
T ss_dssp EEECSEEEECTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred EecCcEEEEecCCcEEEEeEe--cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECC
Confidence 677778889999999999999 466654 999999 665441 13466655555666899999
Q ss_pred CCCCCcEEEEEEEEeCceeE-EEEEEEEEee
Q psy2145 248 CLPEDSGVYTCRAVNALGQA-VTSGNLLVHS 277 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~ 277 (808)
++.+|+|.|+|.|.|..+.. ...+.|.|..
T Consensus 203 v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 203 VEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 99999999999999854322 2245677764
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-21 Score=193.36 Aligned_cols=192 Identities=20% Similarity=0.283 Sum_probs=131.7
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEecC----------------CCCCeEEEee--CcEEEEEECCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKPLE----------------DSSRITTKHD--FGYVAMDLSHVRAE 572 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~l~----------------~~~~~~~~~~--~~~~~L~I~~v~~~ 572 (808)
.+.+|++|+|.|.+ .|.| .+.|.|+|+ |..+. ...|+.+..+ .+..+|.|.+++.+
T Consensus 11 ~v~~G~~v~L~C~~--~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (257)
T 1f3r_B 11 LVRPSETLSLTCTV--SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (257)
T ss_dssp EECTTSEEEEEEEE--ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred cccCCceEEEEEEE--ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence 58999999999999 6764 788999986 32111 1357776654 45678999999999
Q ss_pred CCEEEEEEEEeCCe-------eE--EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecC
Q psy2145 573 DEGIYICKATNALG-------EA--VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLT 643 (808)
Q Consensus 573 D~G~Y~C~a~N~~G-------~~--~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~ 643 (808)
|+|.|+|.|.|..| .. ...+.|.|...+... + ....+ ....+|.+...+
T Consensus 89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~-----~------------~~~~~----~~~~~~~~~~~p- 146 (257)
T 1f3r_B 89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGS-----G------------GGGSG----GGGSDIKLTQSP- 146 (257)
T ss_dssp CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSS-----C------------CSSSC----CCCCEECSCEET-
T ss_pred cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccc-----c------------ccccC----CCccceEEEccC-
Confidence 99999999999865 11 123567776532100 0 00000 000012222222
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEE--CCEEcc------------CCCcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVELK------------MGSRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
....+.+|++++|.|.+ .|.|.+.|.||| +|..+. ...++.+..++...+|.|.++..+|+|.|
T Consensus 147 ~~~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 224 (257)
T 1f3r_B 147 SLLSASVGDRVTLSCKG--SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY 224 (257)
T ss_dssp SEECCCTTCCEEEEEEC--SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred CEEEEcCCCCEEEEEEE--CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEE
Confidence 23468899999999999 799989999999 676441 14678777667778999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEEEeCC
Q psy2145 710 MCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
+|.|.|....-...+.|.|+..+
T Consensus 225 ~C~a~n~~~~~g~gt~l~V~~~~ 247 (257)
T 1f3r_B 225 FCYQYNNGYTFGAGTKLELKAAE 247 (257)
T ss_dssp EEEEESSSEEECCCCEECCSSSC
T ss_pred EEEEeCCCCeECCCEEEEEeCCC
Confidence 99999986222234567776544
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=186.96 Aligned_cols=180 Identities=11% Similarity=0.060 Sum_probs=127.0
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeE--EEEEcccCcCCCeeEEEEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYV--ALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a 127 (808)
+.+...|. . .+.+|++|+|.|.+.+ +.+.|.|+|+|..+....+.. ....... +|.|.+++.+|+|.|+|.|
T Consensus 10 P~i~~~p~-~-~v~~G~~vtL~C~~~~---~~~~~~W~k~g~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 10 PFISAKSS-P-VIPLDGSVKIQCQAIR---EAYLTQLMIIKNSTYREIGRR-LKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp CCEEESSC-S-EEETTCCEEEEECCCT---TCSEEEEEEEETTEEEECSEE-CC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CEEEecCC-C-ccCCCCCEEEEEEcCC---CCCEEEEEECCCccccccccc-CCCCcceeeEEEEcccccccCEEEEEEE
Confidence 33444555 4 7899999999999873 567999999998775433211 1112223 7999999999999999999
Q ss_pred EecCcceE--EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEE
Q psy2145 128 VNLVGFAE--VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205 (808)
Q Consensus 128 ~n~~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C 205 (808)
.|..|... ..+.|.|... ..+|.|...+ +..+.+|++|+|.|
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~-----------------------------------~~~P~i~~~p-~~~v~~G~~v~L~C 127 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGL-----------------------------------YGKPFLSADR-GLVLMPGENISLTC 127 (218)
T ss_dssp EETTTEEEECCCEEEEEECS-----------------------------------SCCCEEEESS-CSEECTTCCCEEEE
T ss_pred EcCCCceeecCCEEEEEcCc-----------------------------------ccCCEEEeCC-CCccCCCCCEEEEE
Confidence 99876433 3355666421 2356666555 55789999999999
Q ss_pred EEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCce-----eEEEEEEEEEee
Q psy2145 206 RLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG-----QAVTSGNLLVHS 277 (808)
Q Consensus 206 ~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g-----~~~~~~~l~V~~ 277 (808)
.+ .+.|.+.+.|+|+|..+... .. .......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|..
T Consensus 128 ~~--~~~~~~~~~W~k~g~~~~~~--~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 128 SS--AHIPFDRFSLAKEGELSLPQ--HQ--SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp EC--SSSCCSEEEEEETTCSSCCS--EE--ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred eC--CCCCCCEEEEEECCCccccc--cc--CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 76 46677899999999887642 11 112233899999999999999999998532 233457777765
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=182.69 Aligned_cols=171 Identities=18% Similarity=0.314 Sum_probs=124.6
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEEC--CEec------------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPL------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~--g~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|++++|.|.+ .+.|.+.|.|+|+ |..+ ....++.....++...|.|.+++.+|+|.|+|.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (210)
T 1lk3_L 11 TVSPGEKLTISCKA--SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ 88 (210)
T ss_dssp EECTTSCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEcCCCCEEEEeeC--CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence 68999999999999 7888889999984 3322 123577777667777999999999999999999
Q ss_pred EEeCCeeEEE-EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 581 ATNALGEAVT-TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 581 a~N~~G~~~~-s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
|.|..|.... ...|.|.... .+|.+...... ..+.+|+.++|.|.
T Consensus 89 ~~~~~~~~~~~~~~l~V~~~~---------------------------------~~P~v~~~~~~-~~~~~g~~v~l~C~ 134 (210)
T 1lk3_L 89 QSWNGPLTFGAGTKLELKRAD---------------------------------AAPTVSIFPPS-TEQLATGGASVVCL 134 (210)
T ss_dssp ECSSSSCEECCCEEEEECCCC---------------------------------BCCEEEEECCC-HHHHTTTEEEEEEE
T ss_pred EEcCCCceeCCCEEEEEcCCC---------------------------------cCCeEEEECCc-hhhccCCcEEEEEE
Confidence 9998775432 2456665321 13666554443 23458999999999
Q ss_pred EeeCC-CCCe-EEEEEECCEEccCCCcE--EEEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 660 VVPVG-DPTM-RFEWFVNGVELKMGSRF--HVQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 660 v~~~g-~P~p-~i~W~~~g~~l~~~~~~--~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
+ .| .|.+ .|.|+|||+.+..+... .... .++ .+.|.|.++..+|+|.|+|.|.|.......+
T Consensus 135 ~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (210)
T 1lk3_L 135 M--NNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV 205 (210)
T ss_dssp E--EEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred E--EeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence 9 55 4554 99999999998765111 1111 111 2489999999999999999999998754433
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-21 Score=187.64 Aligned_cols=177 Identities=17% Similarity=0.236 Sum_probs=129.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EEe----------e--ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RPV----------T--IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~l----------~--~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++++|.|.+. +.|.+.|.|||++ ..+ . ...|+....+++..+|.|.+++.+
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 5 TQSPATL-SVTPGNSVSLSCRAS--QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (213)
T ss_dssp EEECSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeCCccE-EEeCCCcEEEEEECC--CCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChh
Confidence 3447777 899999999999998 4677789999843 221 1 125787777778889999999999
Q ss_pred CCeeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 119 DSGTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|+|.|+|.|.|..+.... .+.|.|... ..+|.+...+....+.+
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~p~v~~~~~~~~~~~ 126 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPYTFGGGTKLEIKRA-----------------------------------DAAPTVSIFPPSSEQLT 126 (213)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCC-----------------------------------CBCCEEEEECCCHHHHH
T ss_pred hCEEEEEeeecCCcceeCCCEEEEEecC-----------------------------------CCCceeEeECCChhhcC
Confidence 999999999998775432 346666421 34677777655555558
Q ss_pred CCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceE--EE-ecCc----eEEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 198 GQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFT--ET-NNFG----FVALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~--~~-~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
|+.++|.|.+.+ ..|.+ .|.|+|||..+..+.... .. ..++ ..+|.|.++..+|+|.|+|.|.|......
T Consensus 127 g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 204 (213)
T 3d9a_L 127 SGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 204 (213)
T ss_dssp TTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred CCcEEEEEEEee-ecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence 999999999953 24554 899999999987651111 11 1122 23899999999999999999999766543
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=184.23 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=122.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEE-----------ccC------CCceEEEe---cCceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVP-----------IKS------GSRFTETN---NFGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~-----------l~~------~~~~~~~~---~~~~~~L~I~~ 247 (808)
+..++.+.+|++|+|.|.+.+...+ ...|.|+|++.. +.. ..+..... ..+..+|.|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 3456889999999999999532222 347999987632 111 11222222 23567899999
Q ss_pred CCCCCcEEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEe
Q psy2145 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHV 327 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 327 (808)
++.+|+|.|+|.|.|..|.....+.+.+.. .+........+
T Consensus 90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~---------------------------------------~~~~~~~~~~~ 130 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDFYEKALVELKVAA---------------------------------------LGSDLHVDVKG 130 (226)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEB---------------------------------------CCCCCEEEEEE
T ss_pred CchHHCeeEEEEEECCCcEEEEEEEEeecc---------------------------------------ceecccceeee
Confidence 999999999999999988877665555432 11222234567
Q ss_pred ecCCeEEEEEEEeecC-CCccEEEEEECC-EeccCCCcEEEEee-CcEEEEEEccCCCCCCeEEEEEEEcCCcceEEEEE
Q psy2145 328 AENQAAHFEARLIPVG-DSKLKVTWLRNG-VPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST 404 (808)
Q Consensus 328 ~~G~~~~l~C~~~~~g-~p~~~v~W~~~g-~~l~~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 404 (808)
.+|+.+.|.|.+ .| .|.+.|+|++++ ..+........... +.+..+.+..+..+|+|.|+|.|.|..|..+.++.
T Consensus 131 ~~g~~v~l~c~~--~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~ 208 (226)
T 4f80_A 131 YKDGGIHLECRS--TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTAS 208 (226)
T ss_dssp EETTEEEEEEEE--EEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEE
T ss_pred ccCCceeeEEEe--ccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEE
Confidence 889999999998 45 699999999965 44443332222222 33445566678899999999999999999999988
Q ss_pred EEEEe
Q psy2145 405 LFVES 409 (808)
Q Consensus 405 l~V~~ 409 (808)
|.|.+
T Consensus 209 v~v~e 213 (226)
T 4f80_A 209 ISIAD 213 (226)
T ss_dssp ECCCT
T ss_pred EEECC
Confidence 88864
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=185.26 Aligned_cols=179 Identities=17% Similarity=0.248 Sum_probs=133.2
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee------------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT------------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++++|.|.+. |.+.|.|||+ |..+. ...|+......+..+|.|.+++.+|
T Consensus 5 ~~~~~~-~v~~G~~v~L~C~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 79 (211)
T 3tv3_L 5 TQPPSA-SGSPGQSITISCTGT----SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDD 79 (211)
T ss_dssp BCCSEE-EECTTCEEEEEEECC----CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred EeCceE-EEcCCCCEEEEEEEC----CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhH
Confidence 344466 899999999999986 6779999993 32221 3357777777788899999999999
Q ss_pred CeeEEEEEEecCc--ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 120 SGTYTCRAVNLVG--FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 120 ~G~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
+|.|+|.|.|..| .....+.|.|.... ..+|.+...+....+.+
T Consensus 80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~v~~~~~~~~~~~ 125 (211)
T 3tv3_L 80 EAVYYCGSLVGNWDVIFGGGTKLTVLGQP----------------------------------KAAPSVTLFPPSSEELQ 125 (211)
T ss_dssp CEEEEEEEEETTTEEEECCCEEEEECCSC----------------------------------CBCCEEEEECCCHHHHH
T ss_pred CEEEEEEEecCCCceeECCCceEEEeCCC----------------------------------CcCCeeEecCCchhhhc
Confidence 9999999999877 34455667775211 35788888777666668
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCce----EEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFGF----VALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
|+.++|.|.+.+...|.+.+.|+|||.++..+... .....++. ..|.|.++..+|+|.|+|.|.|..+....++
T Consensus 126 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 126 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp TTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence 99999999996433356899999999998653111 01111221 3699999999999999999999887665544
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=185.84 Aligned_cols=173 Identities=16% Similarity=0.258 Sum_probs=127.2
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe------------eccCcEEEEeeCCeEEEEEcccCcCCC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV------------TIGHRFRPIHDFGYVALDIIDTIPEDS 120 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~r~~~~~~~~~~~L~I~~~~~~D~ 120 (808)
.|..+ .+.+|++++|.|.+. +.|.+.|.|||+ |..+ ....|+.+..+++..+|.|.+++.+|+
T Consensus 6 qp~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 6 QPPAL-TVSPGEKLTISCKAS--ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT 82 (210)
T ss_dssp CCSEE-EECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCCcE-EEcCCCCEEEEeeCC--CccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence 37777 899999999999998 466778999994 3222 113577777777788999999999999
Q ss_pred eeEEEEEEecCcceEE-EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCC
Q psy2145 121 GTYTCRAVNLVGFAEV-QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQ 199 (808)
Q Consensus 121 G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~ 199 (808)
|.|+|.|.|..+.... .+.|.|... ..+|.+...+....+.+|+
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~P~v~~~~~~~~~~~g~ 127 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKRA-----------------------------------DAAPTVSIFPPSTEQLATG 127 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCC-----------------------------------CBCCEEEEECCCHHHHTTT
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcCC-----------------------------------CcCCeEEEECCchhhccCC
Confidence 9999999998764332 346666421 2467777766555556899
Q ss_pred eEEEEEEEeecCCCC-eEEEEeeCCEEccCC-Cc-eEE-EecCce----EEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 200 RAHFECRLIPVSDNT-MKVEWFHNNVPIKSG-SR-FTE-TNNFGF----VALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 200 ~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~-~~-~~~-~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
.++|.|.+.+ ..|. ..|.|+|||..+..+ .. ... ...++. .+|.|.++..+|+|.|+|.|.|....
T Consensus 128 ~v~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 128 GASVVCLMNN-FYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp EEEEEEEEEE-EBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred cEEEEEEEEe-EeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 9999999963 2344 489999999998765 11 111 112222 37999999999999999999997654
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=191.56 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=135.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee-------------ccCcEEEEee--CCeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT-------------IGHRFRPIHD--FGYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~-------------~~~r~~~~~~--~~~~~L~I 112 (808)
+..|..+ .+.+|++|+|.|.+.+.+.+.+.|.|||+ |. .+. ...|+.+..+ .+.++|.|
T Consensus 4 ~~~p~~~-~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (257)
T 1f3r_B 4 LLESGPG-LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKM 82 (257)
T ss_dssp EEEECCS-EECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEE
T ss_pred EECCCCc-cccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEE
Confidence 4556677 89999999999999852223679999995 22 111 1457777664 56779999
Q ss_pred cccCcCCCeeEEEEEEecCc-------ce--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCC
Q psy2145 113 IDTIPEDSGTYTCRAVNLVG-------FA--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~~g-------~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (808)
.+++.+|+|.|+|.|.|..| .. ...+.|.|...+..... .. + .....+
T Consensus 83 ~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~--------------------~~--~-~~~~~~ 139 (257)
T 1f3r_B 83 NSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGG--------------------GG--S-GGGGSD 139 (257)
T ss_dssp ESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCC--------------------SS--S-CCCCCE
T ss_pred CCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccc--------------------cc--c-CCCccc
Confidence 99999999999999999854 11 13356777543210000 00 0 000123
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------------CCCceEEEecCceEEEEEccCC
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------------SGSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~~~ 249 (808)
+.+...+..+.+.+|++++|.|.+ .+.|.+.+.|+| +|..+. ...++......+..+|.|.+++
T Consensus 140 ~~~~~~p~~~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 217 (257)
T 1f3r_B 140 IKLTQSPSLLSASVGDRVTLSCKG--SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQ 217 (257)
T ss_dssp ECSCEETSEECCCTTCCEEEEEEC--SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCC
T ss_pred eEEEccCCEEEEcCCCCEEEEEEE--CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCC
Confidence 445556677889999999999999 577778999999 665431 1345665545556689999999
Q ss_pred CCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 250 PEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
.+|+|.|+|.|.|........+.|.|..
T Consensus 218 ~~D~G~Y~C~a~n~~~~~g~gt~l~V~~ 245 (257)
T 1f3r_B 218 PEDVATYFCYQYNNGYTFGAGTKLELKA 245 (257)
T ss_dssp GGGCSEEEEEEESSSEEECCCCEECCSS
T ss_pred hhhCEEEEEEEeCCCCeECCCEEEEEeC
Confidence 9999999999999652222345666654
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=185.23 Aligned_cols=196 Identities=16% Similarity=0.256 Sum_probs=135.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeCC--EEe-----------------eccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKNG--RPV-----------------TIGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~g--~~l-----------------~~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++++|.|.+.+ .| .+.|.|||++ ..+ ....|+.+..+ .+..+
T Consensus 6 v~~p~~~-~v~~G~~v~L~C~~~g--~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 82 (247)
T 2ghw_B 6 LVQSGGG-VVQPGKSLRLSCAASG--FAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY 82 (247)
T ss_dssp EEEECCE-EECTTCCEEEEEEEES--SCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEE
T ss_pred EEecCCE-EEecCCcEEEEEEecc--ccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEE
Confidence 4456666 8999999999999984 44 6789999942 211 12357777664 45678
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc--eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF--AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
|.|.+++.+|+|.|+|.|.|..+. ....+.|.|...+...... . ......+|.+.
T Consensus 83 L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~--------------------~---~~~~~~~~~~~ 139 (247)
T 2ghw_B 83 LQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGG--------------------G---SGGGGSETTLT 139 (247)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC-----------------------------------CCCCEE
T ss_pred EEECcCCHHHCEEEEEeeeccCCccccCCceEEEEeccccccccc--------------------c---cCCCCcceEEE
Confidence 999999999999999999997322 2233567665321100000 0 00012456677
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------------CCCceEEEecCceEEEEEccCCCCCc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------------SGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..+..+.+.+|++++|.|.+ .+.|.+.|.|+| +|..+. ...++.........+|.|.+++.+|+
T Consensus 140 ~~~~~~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 217 (247)
T 2ghw_B 140 QSPATLSLSPGERATLSCRA--SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDF 217 (247)
T ss_dssp EECSEEEECTTSCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGC
T ss_pred ccCCEEEecCCCcEEEEEEe--CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHC
Confidence 77888889999999999999 577778999999 665441 23566665555667899999999999
Q ss_pred EEEEEEEEeCceeEE-EEEEEEEe
Q psy2145 254 GVYTCRAVNALGQAV-TSGNLLVH 276 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~-~~~~l~V~ 276 (808)
|.|+|.|.|..+... ..+.|.|.
T Consensus 218 G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 218 AVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEEEccCCCceEcCCEEEEEC
Confidence 999999998644332 34567775
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=184.43 Aligned_cols=172 Identities=15% Similarity=0.233 Sum_probs=127.2
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEEC--CEecC------------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPLE------------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|++++|.|.+ . |.+.+.|+|+ |..+. ...++......+..+|.|.+++.+|+|.|+|.
T Consensus 11 ~v~~G~~v~L~C~~--~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 11 SGSPGQSITISCTG--T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EECTTCEEEEEEEC--C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred EEcCCCCEEEEEEE--C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 68899999999998 4 8899999994 33221 34577776677778999999999999999999
Q ss_pred EEeCCe--eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 581 ATNALG--EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 581 a~N~~G--~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
|.|..| .....+.|.|...+. .+|.+...... ..+.+|+.++|.|
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~v~~~~~~-~~~~~g~~v~l~C 133 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPK--------------------------------AAPSVTLFPPS-SEELQANKATLVC 133 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCC--------------------------------BCCEEEEECCC-HHHHHTTCEEEEE
T ss_pred EecCCCceeECCCceEEEeCCCC--------------------------------cCCeeEecCCc-hhhhcCCCeEEEE
Confidence 999988 344456677763211 24666665543 3445899999999
Q ss_pred EEeeCCC--CCeEEEEEECCEEccCCCcEE--EEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 659 RVVPVGD--PTMRFEWFVNGVELKMGSRFH--VQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 659 ~v~~~g~--P~p~i~W~~~g~~l~~~~~~~--~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.+ .|. |.+.|.|+|||.+|..+.... ....++ .+.|.|..+..+|+|.|+|.|.|..|....++.
T Consensus 134 ~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 134 LI--SDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp EE--EEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred Ee--eeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 99 564 468999999999986521110 011111 247999999999999999999999987766653
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=179.44 Aligned_cols=181 Identities=12% Similarity=0.142 Sum_probs=128.5
Q ss_pred EEeecCcee-ecCCCeEEEEEEEeecCCCCeEEEEeeCC-EEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 186 FTTSLKNCE-IKEGQRAHFECRLIPVSDNTMKVEWFHNN-VPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 186 ~~~~~~~~~-v~~G~~v~L~C~~~~~~~p~~~v~W~~~g-~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.+.|.+.. +.+|++++|.|.+ .|.|.+.|.|+++. .++. .+. ...+....|.|.+++.+|+|.|+|.|.|.
T Consensus 3 v~i~p~~~~~~~~G~~v~L~C~~--~g~P~p~i~W~~~~~~~~~--~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 76 (202)
T 1vca_A 3 IETTPESRYLAQIGDSVSLTCST--TGCESPFFSWRTQIDSPLN--GKV--TNEGTTSTLTMNPVSFGNEHSYLCTATCE 76 (202)
T ss_dssp EEEESSSEEEEETTSCEEEEEEE--ESCSSCEEEEEETTCCCCS--SEE--EEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred EEECCCCcEEEcCCCcEEEEEee--cCCCCCeEEEECCCCCCcc--ceE--EEcCCccEEEECcCCHHHCEEEEEEEEEC
Confidence 445555544 4599999999999 57888999999843 2221 111 22233447999999999999999999999
Q ss_pred ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC
Q psy2145 264 LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343 (808)
Q Consensus 264 ~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g 343 (808)
.|.....+.|.|..+|. .+.+. +. ..+.+|+.++|.|.+ .|
T Consensus 77 ~~~~~~~~~l~V~~~p~----------------------------------~~~~~--~~-~~~~~G~~~~L~C~~--~~ 117 (202)
T 1vca_A 77 SRKLEKGIQVEIYSFPK----------------------------------DPEIH--LS-GPLEAGKPITVKCSV--AD 117 (202)
T ss_dssp TEEEEEEEEEEEEBCCS----------------------------------CCEEE--ES-SCEETTSCEEEEEEE--EE
T ss_pred CceEeeEEEEEEEeCCC----------------------------------CCEeC--Cc-eEEcCCCCEEEEEEE--CC
Confidence 99888888999876431 12222 12 567899999999998 44
Q ss_pred -CCc--cEEEEEECCEeccCCCcEEEE----eeCcEEEEEEccCCCCCCeEEEEEEEcCCcc-------eEEEEEEEEEe
Q psy2145 344 -DSK--LKVTWLRNGVPIQASNRVSTM----HDFGYVALNFKYTYPEDSGTYTCRAVNELGE-------AVTSSTLFVES 409 (808)
Q Consensus 344 -~p~--~~v~W~~~g~~l~~~~~~~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~ 409 (808)
.|. +.|+|+|+|.+|......... .......|.|..+..+|.|.|+|.|.|..|. ...+..|.|.+
T Consensus 118 ~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred cCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence 343 589999999987542100000 0112346788888888999999999998876 34568888887
Q ss_pred cc
Q psy2145 410 KA 411 (808)
Q Consensus 410 ~~ 411 (808)
+|
T Consensus 198 ~P 199 (202)
T 1vca_A 198 SP 199 (202)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-21 Score=189.58 Aligned_cols=180 Identities=20% Similarity=0.283 Sum_probs=134.2
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEc------------cCCCceEEEecCceEEEEEccCC
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPI------------KSGSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~ 249 (808)
.++.|...+..+.+.+|+++.|.|.+ .+.|.+.+.|+|++..+ ....++.... .+|.|.+++
T Consensus 3 ~~~~i~~~~~~~~v~~G~~v~L~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~ 76 (209)
T 1nbq_A 3 GSVTVHSSEPEVRIPENNPVKLSCAY--SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVT 76 (209)
T ss_dssp CCCEEECSCSBCCEETTCCCEEECEE--ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCC
T ss_pred ceEEEEcCCCceEEEcCCCEEEEEEE--eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCC
Confidence 35677778888999999999999999 47789999999987652 1233444433 289999999
Q ss_pred CCCcEEEEEEEEeCce--eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEe
Q psy2145 250 PEDSGVYTCRAVNALG--QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHV 327 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~g--~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 327 (808)
.+|+|.|+|.|.|..| .....+.|.|..+ |.+........+
T Consensus 77 ~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~-------------------------------------p~~~~~~~~~~~ 119 (209)
T 1nbq_A 77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-------------------------------------PSKPTVNIPSSA 119 (209)
T ss_dssp TTSCSEEEEEEEETTSSCEECCEEECCEEBC-------------------------------------CCCCCCCCBSEE
T ss_pred HHHCcEEEEEEecCCCCccceEEEEEEEecC-------------------------------------CcCCCcccccce
Confidence 9999999999999865 3444566666543 333333334568
Q ss_pred ecCCeEEEEEEEeecCCCccEEEEEECCEeccCCCcE-------EEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceE
Q psy2145 328 AENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV-------STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAV 400 (808)
Q Consensus 328 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-------~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~ 400 (808)
.+|+.+.|.|.+. .+.|.+.+.|+++|..+....+. .........+|.|.++..+|+|.|+|.|.|..|...
T Consensus 120 ~~g~~~~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 198 (209)
T 1nbq_A 120 TIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM 198 (209)
T ss_dssp ETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred ecCCEEEEEEeCC-CCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence 8999999999852 68899999999999988765321 001111223799999999999999999999999985
Q ss_pred EEEEE
Q psy2145 401 TSSTL 405 (808)
Q Consensus 401 ~~~~l 405 (808)
.+..+
T Consensus 199 ~s~~v 203 (209)
T 1nbq_A 199 TSNAV 203 (209)
T ss_dssp ECCCB
T ss_pred ccccE
Confidence 54333
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=178.49 Aligned_cols=168 Identities=12% Similarity=0.091 Sum_probs=123.1
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.+|.|...+.. .+.+|++|+|.|.+ .+ +...+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 77 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQG--NY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYR 77 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEEC--CT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEec--CC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEec
Confidence 47888888877 78999999999998 33 45789999999887521100 0011233489999999999999999999
Q ss_pred eCceeE--EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEE
Q psy2145 262 NALGQA--VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 262 n~~g~~--~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~ 339 (808)
|..|.. +..+.|.|... ..+|.+...+ ...+.+|+.++|.|.+
T Consensus 78 ~~~~~~~~s~~~~l~V~~~----------------------------------~~~p~i~~~p-~~~v~~G~~v~L~C~~ 122 (188)
T 1oll_A 78 VGELWSEPSNLLDLVVTEM----------------------------------YDTPTLSVHP-GPEVISGEKVTFYCRL 122 (188)
T ss_dssp ETTEECCCCCCEEEEEESC----------------------------------SCCCEEEEES-CSEEETTCEEEEEEEC
T ss_pred CCCCCCCCCCceEEEeccc----------------------------------CCCCeEEECC-CCccccCCEEEEEEEc
Confidence 976643 34567777531 1245555444 4568899999999997
Q ss_pred eecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2145 340 IPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNEL 396 (808)
Q Consensus 340 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 396 (808)
.+ +.+.+.|+|+|..+... .........|.|.++..+|+|.|+|.|.|..
T Consensus 123 --~~-~~~~~~w~k~g~~~~~~----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 123 --DT-ATSMFLLLKEGRSSHVQ----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp --SS-SCSEEEEEEESSSCEEE----EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred --CC-CCCEEEEEECCcccccc----ccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 44 45799999999776531 1122334589999999999999999999864
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=175.68 Aligned_cols=162 Identities=19% Similarity=0.248 Sum_probs=122.1
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCC-CceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEe
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDS-NLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p-~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 129 (808)
.+...|..+ .+.+|+.++|.|.+.+ .| .+.+.|+|+|..+..+.+ .|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~i~~~p~~~-~v~~G~~v~l~C~~~~--~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~ 72 (170)
T 3ry4_A 6 VLKLEPPWI-NVLQEDSVTLTCQGAR--SPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQ 72 (170)
T ss_dssp EEEEESCCS-EEETTCEEEEEEESCC--CSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETT
T ss_pred EEEeCCCCe-EEECCCcEEEEEEecC--CCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeC
Confidence 344556666 7899999999999985 44 679999999999875422 367789999999999999987
Q ss_pred cCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEee
Q psy2145 130 LVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIP 209 (808)
Q Consensus 130 ~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~ 209 (808)
..+. ..+.|.|.. +|.+. .+....+.+|+.+.|.|.+.
T Consensus 73 ~~~s--~~~~l~v~~--------------------------------------~~~~~-~~~~~~~~~g~~~~l~C~~~- 110 (170)
T 3ry4_A 73 TSLS--DPVHLTVLF--------------------------------------EWLVL-QTPHLEFQEGETIMLRCHSW- 110 (170)
T ss_dssp SBCC--CCEEEEEEC--------------------------------------CSEEE-ECSCSEECTTCCEEEEEEEG-
T ss_pred CCce--EeEEEEEEC--------------------------------------CceEe-cCCCceeecCCeEEEEEECC-
Confidence 5443 345666642 22222 33355688999999999994
Q ss_pred cCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCcee-EEEEEEEEE
Q psy2145 210 VSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQ-AVTSGNLLV 275 (808)
Q Consensus 210 ~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V 275 (808)
.+.|.+.+.|+|+|..+.... ..+ .|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 111 ~~~p~~~~~W~~~g~~~~~~~------~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 111 KDKPLVKVTFFQNGKSQKFSH------LDP--TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp GGCCEEEEEEEETTEEEEEES------SCC--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCCceEEEEECCeEccccC------CCC--eEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 256679999999999875321 112 7999999999999999999999986 344566665
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=188.70 Aligned_cols=174 Identities=21% Similarity=0.361 Sum_probs=129.2
Q ss_pred cccCCCceEEEEEEeeCCCCC-cEEEEEECCEecC---------C----CCCeE----------EEeeCcEEEEEECCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLE---------D----SSRIT----------TKHDFGYVAMDLSHVR 570 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~-~~v~W~k~g~~l~---------~----~~~~~----------~~~~~~~~~L~I~~v~ 570 (808)
.+.+|+.+.|.|.+ .+.|. +.|.|+|++.... . ..++. +..+ + .|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~--~L~i~~v~ 85 (231)
T 2pet_A 11 EVMRGKSVILDCTP--TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-G--RLVLAEAQ 85 (231)
T ss_dssp EEETTCCEEECCCC--BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-C--CEEESSCC
T ss_pred EEEcCCCEEEeccc--CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-c--eEEEcccC
Confidence 58899999999998 78885 8999998765422 0 11111 2221 2 49999999
Q ss_pred CCCCEEEEEEEEeCC-eeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 571 AEDEGIYICKATNAL-GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~-G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
.+|+|.|+|.|.|.. |.....+.|.|...|. .|.+..... ...+.
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~---------------------------------~~~~~~~~~-~~~~~ 131 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPE---------------------------------ATEVSPNKG-TLSVM 131 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC---------------------------------CCEEEECCS-SCCTT
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCC---------------------------------CcEEecCCc-ceeec
Confidence 999999999999997 8888889999987643 244444332 34577
Q ss_pred CCceE-EEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEe-----CC----EEEEEEccCCCCCcEEEEEEEEe
Q psy2145 650 EGQSA-HYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHD-----FG----YVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 650 ~G~~v-~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~-----~~----~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
+|+.+ .|.|.+. .|.|.|.|.|+|||.++.... ++.+... .+ .+.|.|.....+|+|.|+|.|.|
T Consensus 132 ~g~~~~~l~C~~~-~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n 210 (231)
T 2pet_A 132 EDSAQEIATCNSR-NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHY 210 (231)
T ss_dssp CCSEEEEEEEEEE-EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEE
T ss_pred CCCceEEEEEEeE-CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEc
Confidence 89988 9999984 589999999999999998765 5555432 11 25788886666679999999999
Q ss_pred -----CCcc-eEEEEEEEE
Q psy2145 716 -----RAGE-AVSSTSLKV 728 (808)
Q Consensus 716 -----~~G~-~~~s~~l~V 728 (808)
..|. .+.++.|.|
T Consensus 211 ~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 211 SLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp ECGGGCEEEEECCCEECCC
T ss_pred CCcccccccccccceEEEE
Confidence 5666 555666655
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-18 Score=199.87 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=165.2
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcC-CCeeEEEEEEecCcceEEEEEEE
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPE-DSGTYTCRAVNLVGFAEVQATLQ 141 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~~g~~~~~~~l~ 141 (808)
..++.+.|.|.+. |.|.+.+.|.|+|..+..-.+ ..|.|..+... .++.|+|.+.|..|..... .+.
T Consensus 89 ~~~g~l~v~c~~~--g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~ 156 (731)
T 2v5y_A 89 SPPGLLNVYVKVN--NGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVK 156 (731)
T ss_dssp SCSEEEEEEEEET--TCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBE
T ss_pred CCcceEEEEEecC--CCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEE
Confidence 4567999999998 678899999999987642211 14566655233 3478888877777754321 111
Q ss_pred EecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEE-Ee
Q psy2145 142 CRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVE-WF 220 (808)
Q Consensus 142 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~-W~ 220 (808)
+... ....+|.|. .+.++.+.+|++++|.|.+ .+.|.+.+. |+
T Consensus 157 ~~~~---------------------------------~~~~~p~~~-~~~~~~v~~G~~v~l~C~~--~g~P~p~i~~W~ 200 (731)
T 2v5y_A 157 VLGH---------------------------------PCTRTPHFL-RIQNVEVNAGQFATFQCSA--IGRTVAGDRLWL 200 (731)
T ss_dssp EESS---------------------------------CCSSSCEEC-CCCCEEEETTSCEEEEEEE--ESCCCTTCEEEE
T ss_pred eeec---------------------------------ccccccccc-cccceEEeCCCcEEEEEEe--CCCCCCceeEEE
Confidence 2110 114578887 5678999999999999999 588888887 88
Q ss_pred --eCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCcee-EEEEEEEEEeeCCcccccccccchhhhhhhh
Q psy2145 221 --HNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQ-AVTSGNLLVHSKKSIQTETQHGESLSRLQQL 297 (808)
Q Consensus 221 --~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~ 297 (808)
+||..+.......+.......+|.|.++..+|.|.|+|.|.|..|. .+..+.|.|..+|
T Consensus 201 ~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P------------------ 262 (731)
T 2v5y_A 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPP------------------ 262 (731)
T ss_dssp EESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCC------------------
T ss_pred ecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCC------------------
Confidence 7888775433222222222358999999999999999999999998 6677888887643
Q ss_pred hccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEee-cCC-Cc--cEEEEEECCEeccCCCcEEEEeeCcEE
Q psy2145 298 EQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP-VGD-SK--LKVTWLRNGVPIQASNRVSTMHDFGYV 373 (808)
Q Consensus 298 e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~-~g~-p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~ 373 (808)
....++.... .....+.|.|.... .|. +. ..|.|...+.. ...+ ......
T Consensus 263 -------------------~~~~~p~~~~-~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~-----~~~~-~~~~~~ 316 (731)
T 2v5y_A 263 -------------------VPIAPPQLAS-VGATYLWIQLNANSINGDGPIVAREVEYCTASGS-----WNDR-QPVDST 316 (731)
T ss_dssp -------------------CBSSCCEEEE-ECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS-----CEEE-EECCSS
T ss_pred -------------------CCCCCcceec-cCCceEEEEeCCcccCCCCccEEEEEEEEECCCC-----ceEE-eccCcc
Confidence 2222222222 24567888886411 121 21 36777664321 1111 111123
Q ss_pred EEEEccCCCCCCeEEEEEEE--cCCcceEEEEEEEE
Q psy2145 374 ALNFKYTYPEDSGTYTCRAV--NELGEAVTSSTLFV 407 (808)
Q Consensus 374 ~L~I~~v~~~d~G~Y~C~a~--n~~g~~~~~~~l~V 407 (808)
.+.|.++.+.+...|+|.|. |..|....+..+.+
T Consensus 317 ~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~ 352 (731)
T 2v5y_A 317 SYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRT 352 (731)
T ss_dssp EEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEE
T ss_pred eEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEe
Confidence 78999999999999999999 99987654433333
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-21 Score=190.55 Aligned_cols=183 Identities=19% Similarity=0.279 Sum_probs=127.0
Q ss_pred cccCCCceEEEEEEeeCCCCC-----cEEEEEECCEec-------------CCCCCeEEEee---CcEEEEEECCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPT-----LKVEWFRNEKPL-------------EDSSRITTKHD---FGYVAMDLSHVRAED 573 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~-----~~v~W~k~g~~l-------------~~~~~~~~~~~---~~~~~L~I~~v~~~D 573 (808)
.+.+|+++.|.|.+ .+.|. +.|.|+|++... ....++.+..+ .+..+|.|.+++.+|
T Consensus 6 ~~~~G~~v~L~C~~--~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 6 VALVDTDATLRCSF--SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCTTSCEEECCBC--CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred EEECCCCeEEEEEe--cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 57899999999998 66654 789999987443 11233333221 123479999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 653 (808)
+|.|+|.+.|. +..+..+.|.|...+ .+|.+.... ...+.+|+.
T Consensus 84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~---------------------------------~~p~i~~~~--~~~v~~G~~ 127 (222)
T 4i0k_A 84 EGSYTCFVSIQ-DFDSAAVSLQVAAPY---------------------------------SKPSMTLEP--NKDLRPGNM 127 (222)
T ss_dssp CSCEEEEEEEC-CCCCCCCCCCCCBCC---------------------------------CCCEEECCC-------CCSE
T ss_pred CEEEEEEEEeC-CCceEEEEEEEEcCC---------------------------------CCCcEEeCC--CceecCCce
Confidence 99999999986 444444455544321 135544332 235788999
Q ss_pred EEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEE--eCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEe
Q psy2145 654 AHYDCRVVPVGDPTMRFEWFV-NGVELKMGSRFHVQH--DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 654 v~l~C~v~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~ 730 (808)
+.|.|.+. .|.|.|.|.|++ +|..+.......... ++.+..|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 128 ~~l~C~~~-~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 206 (222)
T 4i0k_A 128 VTITCSSY-QGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG 206 (222)
T ss_dssp EEEEEEEE-EEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEecc-cccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence 99999985 589999999999 677665433333322 23356789999999999999999999999999999999998
Q ss_pred CCCccc
Q psy2145 731 KSDIVS 736 (808)
Q Consensus 731 ~p~~~~ 736 (808)
+|..+.
T Consensus 207 ~p~~~~ 212 (222)
T 4i0k_A 207 QPLTFP 212 (222)
T ss_dssp ------
T ss_pred CccccC
Confidence 886544
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=183.10 Aligned_cols=177 Identities=20% Similarity=0.319 Sum_probs=125.7
Q ss_pred CCCccccCCCCcEEEEEEEeeCCC-CCceEEEEeCC---EE------------ee---ccCcEEEEeeCCeEEEEEcccC
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTD-SNLKVEWFKNG---RP------------VT---IGHRFRPIHDFGYVALDIIDTI 116 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~-p~~~v~W~~~g---~~------------l~---~~~r~~~~~~~~~~~L~I~~~~ 116 (808)
|..+ .+.+|++++|.|.+.+ . |.+.|.|||.. .. .. ...|+.+....+..+|.|.+++
T Consensus 7 ~p~~-~v~~G~~v~L~C~~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (218)
T 3s96_B 7 SSSA-SFSLGASAKLTCTLNS--QHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQ 83 (218)
T ss_dssp CSEE-EEETTSCEEEEEEECG--GGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCC
T ss_pred CCcE-EECCCCcEEEEEECCC--CCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCC
Confidence 3366 8999999999999995 5 78899999921 11 11 1147777667778899999999
Q ss_pred cCCCeeEEEEEEecCc-----ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecC
Q psy2145 117 PEDSGTYTCRAVNLVG-----FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLK 191 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 191 (808)
.+|+|.|+|.|.|..| .....+.|.|...+ ..+|.+...+.
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~~~~~~~ 129 (218)
T 3s96_B 84 PEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP----------------------------------KSTPTLTVFPP 129 (218)
T ss_dssp GGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC----------------------------------CBCCEEEEECC
T ss_pred cccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC----------------------------------CCCceEEeeCC
Confidence 9999999999999876 22334567775321 35777877666
Q ss_pred ceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceE--EEecCce---EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFT--ETNNFGF---VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~--~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
...+..|+.++|.|.+.+ ..|.+ .|.|+|||.++..+.... ...++.+ ..|.|.....+|+|.|+|.|.|..+
T Consensus 130 ~~~~~~~~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 208 (218)
T 3s96_B 130 SSEELKENKATLVCLISN-FSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD 208 (218)
T ss_dssp CHHHHHTTEEEEEEEEEE-EBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred CcccccCCcEEEEEEECc-ccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence 666677899999999963 24555 999999999987532111 1112111 2488888888999999999999987
Q ss_pred eEEEE
Q psy2145 266 QAVTS 270 (808)
Q Consensus 266 ~~~~~ 270 (808)
....+
T Consensus 209 ~~~~~ 213 (218)
T 3s96_B 209 TVEKS 213 (218)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 65544
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=180.82 Aligned_cols=176 Identities=15% Similarity=0.212 Sum_probs=127.9
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCC---CceEEEEeC--CEEe------------eccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDS---NLKVEWFKN--GRPV------------TIGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~--g~~l------------~~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
|..+ .+.+|++++|.|.+.+ .| .+.|.|||+ |..+ ....|+....+.+..+|.|.+++.+
T Consensus 7 p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 83 (212)
T 1q0x_L 7 ESAL-TTSPGETVTLTCRSST--GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTE 83 (212)
T ss_dssp CSEE-EECTTCCEEEEEEESS--SCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCeE-eecCCCCEEEEEEecc--cccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCcc
Confidence 7777 8999999999999984 44 478999995 3332 1245777766777789999999999
Q ss_pred CCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 119 DSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|+|.|+|.|.|..+.. .....|.|.... ..+|.+...+....+.+
T Consensus 84 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~v~~~~~~~~~~~ 129 (212)
T 1q0x_L 84 DEAIYFCALWSNNKLVFGGGTKLTVLGQP----------------------------------KSSPTVTLFPPSSEELS 129 (212)
T ss_dssp GCEEEEEEEECSSCEEECCCEEEEECCSC----------------------------------CBCCEEEEECCCHHHHT
T ss_pred CCEEEEEEEecCchhhcCCCeEEEEecCC----------------------------------CCCCeeEEeCCCHHHcc
Confidence 9999999999976532 223455553211 24788877666555668
Q ss_pred CCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCce--EEEecCc----eEEEEEccCCCCCcEEEEEEEEeCceeEEE
Q psy2145 198 GQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRF--TETNNFG----FVALDIMQCLPEDSGVYTCRAVNALGQAVT 269 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 269 (808)
|+.++|.|.+.+ ..|. ..|.|+|||..+..+... .....++ ...|.|..+..+|+|.|+|.|.|.......
T Consensus 130 g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 207 (212)
T 1q0x_L 130 TAKATLVCTITD-FYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK 207 (212)
T ss_dssp TTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred CCcEEEEEEEEE-EeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence 999999999964 2343 499999999998765221 1112222 236899999999999999999998665433
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=187.84 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=134.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCE-----ec---------CCCCCeEEEeeCcEEEEEECC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK-----PL---------EDSSRITTKHDFGYVAMDLSH 568 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~-----~l---------~~~~~~~~~~~~~~~~L~I~~ 568 (808)
.+.|...+.++ .+.+|++|+|.|.+ .+.|.+.|.|+|++. .+ ....|+.+...++..+|.|.+
T Consensus 12 ~~~v~~~p~~~-~v~~G~~v~L~C~~--~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 88 (276)
T 3auv_A 12 DIQMTQSPSSL-SASVGDRVTITCRA--SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISS 88 (276)
T ss_dssp CCCEEEECSEE-ECCTTCCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ceeEEeCCCeE-EEcCCCCEEEEeEc--CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEcc
Confidence 34556555555 68999999999999 788999999998642 11 124577777677777999999
Q ss_pred CCCCCCEEEEEEEEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC-eEEeecCCCc
Q psy2145 569 VRAEDEGIYICKATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP-IFTQLLTGTS 646 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P-~~~~~~~~~~ 646 (808)
++.+|+|.|.|.|.|..+. ....+.|.|...+...... .....+| .+...+ ...
T Consensus 89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~-----------------------~~~~~~p~~~~~~p-~~~ 144 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEG-----------------------RSGGGGSEVQLVES-GGG 144 (276)
T ss_dssp CCGGGCEEEEEEECSSSSCCCCCCEEEEC----------------------------------------CCEEEEE-CCE
T ss_pred CChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccc-----------------------cccccCcceEEECC-Cce
Confidence 9999999999999998654 2233566666543200000 0000112 223332 346
Q ss_pred cccCCceEEEEEEEeeCCCC--CeEEEEEECC--EEc-----------------cCCCcEEEEEe--CCEEEEEEccCCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDP--TMRFEWFVNG--VEL-----------------KMGSRFHVQHD--FGYVTLDITKCVP 703 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~g--~~l-----------------~~~~~~~~~~~--~~~~~L~I~~v~~ 703 (808)
.+.+|++++|.|.+ .|.| .+.|.|||++ ..+ ....|+.+..+ .+..+|.|.++..
T Consensus 145 ~v~~G~~v~L~C~~--~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 222 (276)
T 3auv_A 145 LVQPGGSLRLSCAA--SGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA 222 (276)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred EecCCCeEEEEEEe--cCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh
Confidence 78999999999999 6776 5899999963 221 12467877765 4567899999999
Q ss_pred CCcEEEEEEEEeCC---cce--EEEEEEEEEeCC
Q psy2145 704 ADSGVYMCKAINRA---GEA--VSSTSLKVKSKS 732 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~---G~~--~~s~~l~V~~~p 732 (808)
+|+|.|+|.|.|.. +.. ...+.|.|...+
T Consensus 223 ~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~ 256 (276)
T 3auv_A 223 EDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSAS 256 (276)
T ss_dssp GGCEEEEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred hHCEEEEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence 99999999999983 221 123677776543
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=183.43 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=129.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCC-ceEEEEeCCEEeecc------------------CcEEEEe---eCCeEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFKNGRPVTIG------------------HRFRPIH---DFGYVAL 110 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~-~~v~W~~~g~~l~~~------------------~r~~~~~---~~~~~~L 110 (808)
+..|..+ .|.+|++++|.|.+.+.+.+. +.|.|+|++..+... .|+.... ..+..+|
T Consensus 3 l~~p~~v-tv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL 81 (218)
T 4frw_A 3 LETSDVV-TVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSV 81 (218)
T ss_dssp EECCSEE-EEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCE
T ss_pred EeCCCeE-EEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEE
Confidence 3467777 899999999999998522221 358999987544321 1222111 1234579
Q ss_pred EEcccCcCCCeeEEEEEEecCcceEEEE-EEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGFAEVQA-TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~-~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
.|.+++.+|+|.|.|.+.+..+...... .+.+. ..++.+...
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~ 124 (218)
T 4frw_A 82 LLRNAVQADEGEYECRVSTFPAGSFQARLRLRVL-------------------------------------VPPLPSLNP 124 (218)
T ss_dssp EESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE-------------------------------------BCCCCEEEE
T ss_pred EEeeccHHHCCceeEEEEeccCceeeeEEEEEEe-------------------------------------eeccceeee
Confidence 9999999999999999998766544333 33332 223334445
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecC-ceEEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF-GFVALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
.....+.+|+.+.|.|.+ .+.|.+.|+|+++|..+.....+...... ....|.|.++..+|+|.|+|+|+|..|...
T Consensus 125 ~~~~~~~~~~~~~~~c~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~ 202 (218)
T 4frw_A 125 GPALEEGQGLTLAASCTA--EGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQD 202 (218)
T ss_dssp CSCEETTCCSEEEEEEEE--EEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred eeeeeeeeccccceeeec--cCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeE
Confidence 566778899999999999 57888999999999887654333221111 133799999999999999999999999877
Q ss_pred EEEEEEEee
Q psy2145 269 TSGNLLVHS 277 (808)
Q Consensus 269 ~~~~l~V~~ 277 (808)
..+.|.|..
T Consensus 203 ~~~t~~v~V 211 (218)
T 4frw_A 203 QRITHILHV 211 (218)
T ss_dssp EEEEEECCE
T ss_pred EEEEEEEEE
Confidence 776666643
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=178.17 Aligned_cols=171 Identities=11% Similarity=0.110 Sum_probs=120.2
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE-EEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.|...+. ..+.+|++|+|.|.+ . .|.+.+.|+|+|..+....... .........|.|.+++.+|+|.|+|.
T Consensus 7 ~~P~i~~~p~--~~v~~G~~v~L~C~~--~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~ 81 (201)
T 1nkr_A 7 RKPSLLAHPG--PLVKSEETVILQCWS--D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 81 (201)
T ss_dssp CCCEEEEESC--SEEETTCCEEEEEEE--S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEEEcC--CccCCCCcEEEEEec--c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEe
Confidence 4677766554 258899999999998 4 4778999999998664321110 01111234799999999999999999
Q ss_pred EEeCCe-----eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEE
Q psy2145 581 ATNALG-----EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655 (808)
Q Consensus 581 a~N~~G-----~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~ 655 (808)
|.|..+ ..+..+.|.|.... .+|.+..... ..+.+|+.++
T Consensus 82 a~~~~~~~~~~~~s~~~~l~V~~~~---------------------------------~~p~i~~~p~--~~v~~G~~v~ 126 (201)
T 1nkr_A 82 GSVTHSPYQVSAPSDPLDIVIIGLY---------------------------------EKPSLSAQPG--PTVLAGENVT 126 (201)
T ss_dssp EEBTTBTTCCCCCCCCEEEEEECSS---------------------------------CCCEEEEESC--SEECTTCEEE
T ss_pred EecCCCCccccCCCCCEEEEeeccC---------------------------------CCCceecCCC--CccCCCCeEE
Confidence 987532 23445677776421 2466665543 3688999999
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-CEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 656 YDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-GYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 656 l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
|.|.+ .+ |.+.|.|+|||..+...........+ ....|.|.++. |+|.|+|.|.|..
T Consensus 127 L~C~~--~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 127 LSCSS--RS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EEEEE--SS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred EEEeC--CC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 99998 55 56899999999877643222221111 14589999998 9999999999874
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=184.50 Aligned_cols=176 Identities=23% Similarity=0.369 Sum_probs=129.2
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEec-----------------CCCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKPL-----------------EDSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~l-----------------~~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|+|+ +..+ ....|+.+..+ .+..+|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (256)
T 1nqb_A 11 LVKPGASVKLSCKA--SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS 88 (256)
T ss_dssp EECTTCCEEEEEEE--CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eecCCCcEEEEEEe--ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence 58899999999999 6775 678999994 3221 01357776654 4567899999999
Q ss_pred CCCEEEEEEEEeCCee-----EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 572 EDEGIYICKATNALGE-----AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~-----~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
+|+|.|.|.|.|..|. ....+.|.|... |.+...+. ..
T Consensus 89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~------------------------------------~~v~~~p~-~~ 131 (256)
T 1nqb_A 89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD------------------------------------IELTQTPL-SL 131 (256)
T ss_dssp GGCEEEEEEECCTTSSSSCSEECCCEEEEECCC------------------------------------CCEEEECS-EE
T ss_pred hhCEEEEEEEeeccCccceeEEcCceeeeeccc------------------------------------ccEEecCc-EE
Confidence 9999999999998763 122355666532 33333322 24
Q ss_pred cccCCceEEEEEEEeeCCCCCe-----EEEEEE--CCEEcc------------CCCcEEEEEeCCEEEEEEccCCCCCcE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTM-----RFEWFV--NGVELK------------MGSRFHVQHDFGYVTLDITKCVPADSG 707 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p-----~i~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G 707 (808)
.+.+|++++|.|.+ .|.|.+ .|.||| +|..+. ...++.+..+....+|.|.++..+|+|
T Consensus 132 ~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 209 (256)
T 1nqb_A 132 PVSLGDQASISCRS--SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG 209 (256)
T ss_dssp EECTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EEecCCcEEEEeEe--cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCE
Confidence 68899999999999 788875 999999 676542 146787777777889999999999999
Q ss_pred EEEEEEEeCCcceE-EEEEEEEEeC
Q psy2145 708 VYMCKAINRAGEAV-SSTSLKVKSK 731 (808)
Q Consensus 708 ~Y~C~A~N~~G~~~-~s~~l~V~~~ 731 (808)
.|+|.|.|..+... ..+.|.|..+
T Consensus 210 ~Y~C~a~~~~~~~fg~gt~l~V~~~ 234 (256)
T 1nqb_A 210 VYYCFQGSHVPYTFGGGTKLEIKRA 234 (256)
T ss_dssp EEEEEECSSSSCEECCCEEEEECC-
T ss_pred EEEEEEccCCceEECCCEEEEEECC
Confidence 99999999654322 2356777644
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-20 Score=180.23 Aligned_cols=173 Identities=16% Similarity=0.273 Sum_probs=124.5
Q ss_pred cccCCCceEEEEEEeeCCCC---CcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP---TLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P---~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
.+.+|+.++|.|.+ .+.| .+.|.|+|++ ..+ ....++.....++...|.|.+++.+|+|.|
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (212)
T 1q0x_L 11 TTSPGETVTLTCRS--STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY 88 (212)
T ss_dssp EECTTCCEEEEEEE--SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred eecCCCCEEEEEEe--cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEE
Confidence 58899999999999 7777 4789999963 222 124577776667778999999999999999
Q ss_pred EEEEEeCCeeEE-EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEE
Q psy2145 578 ICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHY 656 (808)
Q Consensus 578 ~C~a~N~~G~~~-~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l 656 (808)
.|.|.|..|... ....|.|...+. .+|.+...... ..+.+|+.++|
T Consensus 89 ~C~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~v~~~~~~-~~~~~g~~v~L 135 (212)
T 1q0x_L 89 FCALWSNNKLVFGGGTKLTVLGQPK--------------------------------SSPTVTLFPPS-SEELSTAKATL 135 (212)
T ss_dssp EEEEECSSCEEECCCEEEEECCSCC--------------------------------BCCEEEEECCC-HHHHTTTEEEE
T ss_pred EEEEecCchhhcCCCeEEEEecCCC--------------------------------CCCeeEEeCCC-HHHccCCcEEE
Confidence 999999876432 234555543211 24666654443 23557999999
Q ss_pred EEEEeeCCC-CCe-EEEEEECCEEccCCCcEE-EEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 657 DCRVVPVGD-PTM-RFEWFVNGVELKMGSRFH-VQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 657 ~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~-~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
.|.+ .|. |.+ .|.|+|||+.+..+.... ... .++ .+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 136 ~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 136 VCTI--TDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp EEEE--EEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred EEEE--EEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 9999 564 443 999999999987652211 111 111 24799999999999999999999987655444
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=177.19 Aligned_cols=157 Identities=15% Similarity=0.299 Sum_probs=118.6
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEE--CCEec----------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPL----------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k--~g~~l----------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
...+|++|+|.|...+.+.|.+.|.|+| ++..| ..+.|+.+..+ | +|.|.+++.+|+|.|+|.|.
T Consensus 10 ~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n-g--sL~I~~v~~~DsG~Y~c~~~ 86 (182)
T 1hnf_A 10 WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-G--TLKIKHLKTDDQDIYKVSIY 86 (182)
T ss_dssp EEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT-S--CEEECSCCGGGCEEEEEEEE
T ss_pred EEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC-C--CEEECCCChhhCEEEEEEEE
Confidence 5788999999995432346678999999 98877 34567766643 4 79999999999999999999
Q ss_pred eCCeeEEE--EEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEE
Q psy2145 583 NALGEAVT--TASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRV 660 (808)
Q Consensus 583 N~~G~~~~--s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v 660 (808)
|..|.... .+.|.|.... .+|.+... +..+.|.|.+
T Consensus 87 n~~g~~~~~~~~~L~V~~~~---------------------------------~~P~i~~~---------~~~v~L~C~~ 124 (182)
T 1hnf_A 87 DTKGKNVLEKIFDLKIQERV---------------------------------SKPKISWT---------CINTTLTCEV 124 (182)
T ss_dssp ETTSCEEEEEEEEEEEECCC---------------------------------CCCEEEEE---------TTTTEEEEEC
T ss_pred eCCCceeEEEEEEEEEcCcC---------------------------------CCCEEEEc---------cCcEEEEeEc
Confidence 99887654 4566665421 23655432 3369999999
Q ss_pred eeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 661 VPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 661 ~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
.|.|.|.|.|++||..| .+ ... .|.+.. ..+|+|.|+|.|.|.+|..+++..+.+.
T Consensus 125 --~~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c~ 180 (182)
T 1hnf_A 125 --MNGTDPELNLYQDGKHL-KL-------SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSCP 180 (182)
T ss_dssp --SSCSSCEEEEEESSCEE-EE-------ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred --cCCCCCEEEEEECCEEC-CC-------CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceecCC
Confidence 79999999999999988 21 122 233332 4789999999999999999998887553
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=181.57 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=121.8
Q ss_pred cccCCCceEEEEEEeeC--CCCCcEEEEEECCEecCC------------CCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPV--GDPTLKVEWFRNEKPLED------------SSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~--g~P~~~v~W~k~g~~l~~------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|+++.|.|.+.+. +.|.+.+.|+|++..+.. ..|..+.. .+..+|.|.+++.+|+|.|+|.
T Consensus 5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeEEEEE
Confidence 57899999999998311 246789999999987621 12333321 2233799999999999999999
Q ss_pred EEeCCeeE-----EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEE
Q psy2145 581 ATNALGEA-----VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655 (808)
Q Consensus 581 a~N~~G~~-----~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~ 655 (808)
|.|..|.. ...+.|.|...+ .+|.+.... ...|+.++
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~~---------------------------------~~p~~~~~~-----~~~g~~~~ 125 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKADF---------------------------------PTPSISDFE-----IPTSNIRR 125 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECCC---------------------------------CCCEEEEEE-----CSSTTEEE
T ss_pred EEcCCCCccccccccEEEEEEcCCC---------------------------------CCCceEecc-----CCCCCeEE
Confidence 99987654 345666665432 124444321 24599999
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCC-EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 656 YDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFG-YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 656 l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
|.|.+. .|.|.|.|.|+|||..|.......... +++ +....+..+..+|+|.|+|.|.|..|..+..+.+
T Consensus 126 l~C~~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 126 IICSTS-GGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEEEEE-EESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEEecC-CccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 999983 399999999999999988653322222 223 3333456667799999999999999998877665
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=187.37 Aligned_cols=216 Identities=11% Similarity=0.070 Sum_probs=121.5
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEE-EeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP-IHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
..|. . .+.+|++|+|.|.+.+ +.+.|.|||+|..+........ ........|.|.+++.+|+|.|+|.+.|..+
T Consensus 12 ~~P~-~-~V~~G~~VtL~C~~~~---~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~ 86 (257)
T 1b6u_A 12 AHPG-P-LVKSEETVILQCWSDV---RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHS 86 (257)
T ss_dssp CBSC-S-EEESSCCEEEEEEESS---CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSC
T ss_pred EcCC-C-EecCCCCEEEEEecCC---CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCC
Confidence 3444 4 7899999999999973 4568999999976542211100 0112345899999999999999999986432
Q ss_pred -----ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEE
Q psy2145 133 -----FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL 207 (808)
Q Consensus 133 -----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~ 207 (808)
..+..+.|.|... ..+|.+...+. ..+.+|++|+|.|.+
T Consensus 87 ~~~~s~~S~~~~L~V~~~-----------------------------------~~~P~l~~~p~-~~V~~G~~vtL~C~~ 130 (257)
T 1b6u_A 87 PYQLSAPSDPLDIVITGL-----------------------------------YEKPSLSAQPG-PTVLAGESVTLSCSS 130 (257)
T ss_dssp TTSCCCCCCCEEEEEECS-----------------------------------SCCCEEECSSC-TTCBTTCEEEEEEEC
T ss_pred CccccccCCCEEEecccC-----------------------------------CCCcceEccCC-CccCCCCEEEEEEeC
Confidence 2244566777532 24567766664 468899999999998
Q ss_pred eecCCCCeEEEEeeCCEEccCCCceEEEec-CceEEEEEccCCCCCcEEEEEEEEeCce-----eEEEEEEEEEeeCCcc
Q psy2145 208 IPVSDNTMKVEWFHNNVPIKSGSRFTETNN-FGFVALDIMQCLPEDSGVYTCRAVNALG-----QAVTSGNLLVHSKKSI 281 (808)
Q Consensus 208 ~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~i 281 (808)
.+. .+.+.|+|||..+........... .....|.|.+++ |+|.|+|.|.|..+ ..+..+.|.|...|
T Consensus 131 --~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p-- 203 (257)
T 1b6u_A 131 --RSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP-- 203 (257)
T ss_dssp --SSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC--
T ss_pred --CCC-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC--
Confidence 344 468999999987754332211111 123489999998 99999999997532 22334667666533
Q ss_pred cccccccchhhhhhhhhccccccccccccccCCCCeeccCC-CceEeecCCeEEEEEEEeecCCCccEEEEEECC
Q psy2145 282 QTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM-RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG 355 (808)
Q Consensus 282 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~-~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g 355 (808)
.+..+. .......|..+.|.|.+ |.+.+.|.|...+
T Consensus 204 -----------------------------------~~~~p~~~~~~~~~g~~~~l~~~~---~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 204 -----------------------------------SNSWPSPTEPSSETGNPRHLHAAA---EQKLISEEDLNLD 240 (257)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred -----------------------------------CCCCCCCcccCccCCCeEEEEEEE---cchHHHHHHhhhh
Confidence 222111 12234569999999986 8888899997744
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=182.64 Aligned_cols=184 Identities=14% Similarity=0.168 Sum_probs=125.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee-----------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT-----------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++++|.|.+.+.+.+.+.|.|||+ |..+. ...|+.+..+ .+..+|.
T Consensus 4 ~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (219)
T 1c1e_H 4 LVQSGPE-LKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQ 82 (219)
T ss_dssp EEECCCE-EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEE
T ss_pred EeCCCCe-EecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEE
Confidence 4557777 89999999999999852223679999996 43321 1357776654 3567999
Q ss_pred EcccCcCCCeeEEEEEEecCcce----EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGFA----EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
|.+++.+|+|.|+|.|.|..+.. ...+.|.|.... ..+|.+.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~i~ 128 (219)
T 1c1e_H 83 INNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK----------------------------------TTPPSVY 128 (219)
T ss_dssp ECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC----------------------------------CBCCEEE
T ss_pred ECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCC----------------------------------CCCCeEE
Confidence 99999999999999999976421 234566665321 2456666
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
..+....+.+|+.++|.|.+.+ ..|.+ .|.|+|+|..+...........+. ...|.|... ..|.|.|+|.|.|.
T Consensus 129 ~~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~ 206 (219)
T 1c1e_H 129 PLAPGSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHP 206 (219)
T ss_dssp EECCCSSSCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEG
T ss_pred EecCccccccCCeEEEEEEccc-ccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeC
Confidence 5554556779999999999952 27777 999999998753111001111111 126888544 44669999999998
Q ss_pred ceeEEEEEEE
Q psy2145 264 LGQAVTSGNL 273 (808)
Q Consensus 264 ~g~~~~~~~l 273 (808)
.|.......|
T Consensus 207 ~~~~~~~~~i 216 (219)
T 1c1e_H 207 ASSTKVDKKI 216 (219)
T ss_dssp GGTEEEEEEC
T ss_pred CCCccEEEec
Confidence 8876554444
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=175.61 Aligned_cols=157 Identities=18% Similarity=0.267 Sum_probs=114.2
Q ss_pred cccCCCceEEEEEEeeCC-CCCcEEEEEECCEecC---CC---------------CCeEEEeeCcEEEEEECCCCCCCCE
Q psy2145 515 AVEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLE---DS---------------SRITTKHDFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g-~P~~~v~W~k~g~~l~---~~---------------~~~~~~~~~~~~~L~I~~v~~~D~G 575 (808)
.+.+|++|+|.|.+ .+ .+.+.|.|+|+|..+. .+ .|+.+. .+ .+|.|.+++.+|+|
T Consensus 9 ~~~~G~~v~L~C~~--~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~--~sL~I~~v~~~D~G 83 (193)
T 2if7_A 9 NGILGESVTLPLEF--PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QS--YSLQLSNLKMEDTG 83 (193)
T ss_dssp EEETTSCEEECCCC--CCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TT--CCEEECSCCGGGCE
T ss_pred EEEecCeEEEeccC--CCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CC--eEEEECCCCcccCc
Confidence 57899999999998 44 5567999999987542 10 233333 12 37999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCc-eE
Q psy2145 576 IYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ-SA 654 (808)
Q Consensus 576 ~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~-~v 654 (808)
.|+|.|.|..|.....+.|.|...+. +|.+.... ..+..|. .+
T Consensus 84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~---------------------------------~p~i~~~~---~~~~~g~~~v 127 (193)
T 2if7_A 84 SYRAQISTKTSAKLSSYTLRILRQLR---------------------------------NIQVTNHS---QLFQNMTCEL 127 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCE---------------------------------EEEEEECC---C---CSSEEE
T ss_pred eEEEEEEecCCCeEEEEEEEEEccCC---------------------------------CCeEecCc---eeecCCCceE
Confidence 99999999999877788888875422 13333322 1234465 89
Q ss_pred EEEEEEeeCC-CCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCC-CcEEEEEEEEeCCcceEEEEE
Q psy2145 655 HYDCRVVPVG-DPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPA-DSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 655 ~l~C~v~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
+|.|.+ .| .|.|.|.|+++|..+..+. .|.|.....+ |+|.|+|.|.|.+|..+..+.
T Consensus 128 ~L~C~~--~g~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 128 HLTCSV--EDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp EEEEEE--ESCCTTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred EEEEEE--ecCCCceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 999999 57 5689999999999875432 3566544444 899999999999999865543
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=180.56 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=126.5
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCC---CceEEEEeCCEEeec---------------cCcEEEEee---CCeEEEEEcc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDS---NLKVEWFKNGRPVTI---------------GHRFRPIHD---FGYVALDIID 114 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~g~~l~~---------------~~r~~~~~~---~~~~~L~I~~ 114 (808)
+..+ .+.+|++++|.|.+.+.+.+ .+.|.|+|++..+.. ..|..+..+ .+..+|.|.+
T Consensus 8 ~~~v-~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 8 KDLY-VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp CSEE-EEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CccE-EEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 4444 88999999999998732111 458999998744421 134444322 2567899999
Q ss_pred cCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCcee
Q psy2145 115 TIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCE 194 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 194 (808)
++.+|+|.|+|.|.| .|.....+.|.|...+. .|.+.. ...
T Consensus 87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~-----------------------------------~~~~~~---~~~ 127 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYN-----------------------------------KINQRI---LVV 127 (222)
T ss_dssp CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC-----------------------------------CCEEEE---EEE
T ss_pred cccccCeEEEEEEEe-CCCceeEEEEEEECCCC-----------------------------------CCCcee---eee
Confidence 999999999999999 67777778888864321 121111 125
Q ss_pred ecCCCeEEEEEEEeecCCCCeEEEEeeC-CEEccCCCceEEEe--cCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEE
Q psy2145 195 IKEGQRAHFECRLIPVSDNTMKVEWFHN-NVPIKSGSRFTETN--NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSG 271 (808)
Q Consensus 195 v~~G~~v~L~C~~~~~~~p~~~v~W~~~-g~~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 271 (808)
+.+|+.++|.|.+. +.|.+.|.|+++ |..+.......... ++....+.+..+..+|.|.|+|.|.|..|....++
T Consensus 128 ~~~g~~v~L~C~~~--g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~ 205 (222)
T 3sbw_C 128 DPVTSEHELTCQAE--GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTA 205 (222)
T ss_dssp ETTTTEEEEEEEEE--EBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred ecCCCcEEEEEEec--CCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEE
Confidence 67899999999994 688899999998 66665433322211 12222233345567999999999999999999999
Q ss_pred EEEEeeC
Q psy2145 272 NLLVHSK 278 (808)
Q Consensus 272 ~l~V~~~ 278 (808)
.|.|...
T Consensus 206 ~l~v~~~ 212 (222)
T 3sbw_C 206 ELVIPEL 212 (222)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9988653
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=184.90 Aligned_cols=181 Identities=16% Similarity=0.239 Sum_probs=132.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC-CceEEEEeCCEE-----ee----c----cCcEE----------EEeeCCeE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS-NLKVEWFKNGRP-----VT----I----GHRFR----------PIHDFGYV 108 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p-~~~v~W~~~g~~-----l~----~----~~r~~----------~~~~~~~~ 108 (808)
+..|..+ .+.+|+++.|.|.+.+ .| .+.|.|+|++.. +. . ..|+. +..+ +
T Consensus 4 v~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~-- 77 (231)
T 2pet_A 4 LSVPPLV-EVMRGKSVILDCTPTG--THDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-G-- 77 (231)
T ss_dssp CCCCSEE-EEETTCCEEECCCCBS--CCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-C--
T ss_pred ccCCCcE-EEEcCCCEEEecccCC--CCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-c--
Confidence 4567777 8999999999999984 56 489999985533 21 1 12222 2222 2
Q ss_pred EEEEcccCcCCCeeEEEEEEecC-cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLV-GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
.|.|.+++.+|+|.|+|.|.|.. |.....+.|.|... ...|.+.
T Consensus 78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------p~~~~~~ 122 (231)
T 2pet_A 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK-----------------------------------PEATEVS 122 (231)
T ss_dssp CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBC-----------------------------------CCCCEEE
T ss_pred eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEec-----------------------------------CCCcEEe
Confidence 39999999999999999999987 77788888888643 2346777
Q ss_pred eecCceeecCCCeE-EEEEEEeecCCCCeEEEEeeCCEEccCCC----ceEEEe-----cCc----eEEEEEccCCCCCc
Q psy2145 188 TSLKNCEIKEGQRA-HFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETN-----NFG----FVALDIMQCLPEDS 253 (808)
Q Consensus 188 ~~~~~~~v~~G~~v-~L~C~~~~~~~p~~~v~W~~~g~~l~~~~----~~~~~~-----~~~----~~~L~I~~~~~~D~ 253 (808)
..+....+.+|+.+ .|.|.+. .+.|.+.|.|+|+|.++.... ++.+.. ..+ ...|.|.....+|.
T Consensus 123 ~~~~~~~~~~g~~~~~l~C~~~-~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~ 201 (231)
T 2pet_A 123 PNKGTLSVMEDSAQEIATCNSR-NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRD 201 (231)
T ss_dssp ECCSSCCTTCCSEEEEEEEEEE-EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGG
T ss_pred cCCcceeecCCCceEEEEEEeE-CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCC
Confidence 77777888899998 9999984 367888999999999997665 444332 111 13588876666679
Q ss_pred EEEEEEEEe-----Ccee-EEEEEEEEE
Q psy2145 254 GVYTCRAVN-----ALGQ-AVTSGNLLV 275 (808)
Q Consensus 254 G~Y~C~a~n-----~~g~-~~~~~~l~V 275 (808)
|.|+|.|.| ..|. .+..+.|.|
T Consensus 202 g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 202 ASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ceEEEEEEcCCcccccccccccceEEEE
Confidence 999999999 4555 445555554
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=183.36 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=137.5
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee-----------------ccCcEEEEee--CCeEEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT-----------------IGHRFRPIHD--FGYVAL 110 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~-----------------~~~r~~~~~~--~~~~~L 110 (808)
++..|..+ .+.+|++|+|.|.+.+...+.+.|.||| .+..+. ...|+.+..+ .+.++|
T Consensus 4 ~~~~p~~~-~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 82 (253)
T 3uzq_A 4 LLEQSGAE-LVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL 82 (253)
T ss_dssp CEEECCCE-EECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred eEecCCCe-eecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence 35567777 8999999999999985323467999999 222111 1357776654 346789
Q ss_pred EEcccCcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 111 DIIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.......... .......+|.+...
T Consensus 83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~-----------------------~~~~~~~~~~v~~~ 139 (253)
T 3uzq_A 83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGG-----------------------GSGGGGSELVMTQT 139 (253)
T ss_dssp EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC--------------------------------CCEEEE
T ss_pred EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCcccccc-----------------------ccCCCcccceEECc
Confidence 999999999999999999865544 245667775321100000 00011346778888
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCe----EEEEeeC--CEEcc------------CCCceEEEecCceEEEEEccCCCC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTM----KVEWFHN--NVPIK------------SGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~----~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
+....+.+|++|+|.|.+ .+.+.+ .+.|||+ |..+. ...++......+..+|.|.+++.+
T Consensus 140 p~~~~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 217 (253)
T 3uzq_A 140 PASLAVSLGQRATISCRA--SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEAD 217 (253)
T ss_dssp CSEEEECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCeEEEeCCCCEEEEEEe--cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHH
Confidence 888999999999999999 566665 8999994 32221 124566555566678999999999
Q ss_pred CcEEEEEEEEeCceeEEE-EEEEEEeeC
Q psy2145 252 DSGVYTCRAVNALGQAVT-SGNLLVHSK 278 (808)
Q Consensus 252 D~G~Y~C~a~n~~g~~~~-~~~l~V~~~ 278 (808)
|+|.|+|.|.|..+.... -+.|.|...
T Consensus 218 DsG~Y~C~~~n~~~~~fg~gt~l~v~~~ 245 (253)
T 3uzq_A 218 DVATYFCQRSNEVPWTFGGGTKLEIKRP 245 (253)
T ss_dssp GCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred HCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence 999999999996543332 356777653
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=182.58 Aligned_cols=201 Identities=16% Similarity=0.246 Sum_probs=137.3
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee--------------ccCcEEEEee--CCe
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT--------------IGHRFRPIHD--FGY 107 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~--------------~~~r~~~~~~--~~~ 107 (808)
.+.+...|..+ .+.+|++|+|.|.+.+...+.+.+.|||.. .. +. ...|+.+..+ .+.
T Consensus 6 ~~~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 6 HQVQLVQSGAE-VKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp -CCEEEECCCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred ceEEEEecCCc-eecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 34556667777 899999999999998522367799999832 11 11 1247777644 456
Q ss_pred EEEEEcccCcCCCeeEEEEEEec------------CcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccc
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNL------------VGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEY 175 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~------------~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (808)
++|.|.+++.+|+|.|.|.|.|. .+.....+.|.|..........
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~----------------------- 141 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGG----------------------- 141 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC-----------------------------
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccccc-----------------------
Confidence 78999999999999999999986 2333445667775432110000
Q ss_pred cccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeC--CEEcc------------CCCceEEEecCce
Q psy2145 176 IEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHN--NVPIK------------SGSRFTETNNFGF 240 (808)
Q Consensus 176 ~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~--g~~l~------------~~~~~~~~~~~~~ 240 (808)
.......+|.+...+....+.+|++|+|.|.+ .+.+. +.+.|||. +..+. ...++....+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 219 (256)
T 3juy_B 142 GSGGGGSEIVLTQAPGTLSLSPGERATFSCRS--SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTD 219 (256)
T ss_dssp ----CCCCCCEEEECSEEEECTTSCEEEEEEE--SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE
T ss_pred ccCCCcceeEEEecCCeEEEeCCCCEEEEEEE--CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCE
Confidence 00000236778888889999999999999999 45665 89999982 33221 2356666666667
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEE-EEEEEEE
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAV-TSGNLLV 275 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V 275 (808)
.+|.|.+++.+|+|.|+|.|.|..+... ..+.|.|
T Consensus 220 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V 255 (256)
T 3juy_B 220 FTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLER 255 (256)
T ss_dssp EEEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred EEEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence 7899999999999999999998544322 2345554
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=174.89 Aligned_cols=167 Identities=10% Similarity=0.049 Sum_probs=117.5
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEE-EeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP-IHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
+...|. . .+.+|++++|.|.+. .+.+.|.|||+|..+....+... ........|.|.+++.+|+|.|+|.|.|.
T Consensus 11 i~~~p~-~-~v~~G~~v~L~C~~~---~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~ 85 (201)
T 1nkr_A 11 LLAHPG-P-LVKSEETVILQCWSD---VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT 85 (201)
T ss_dssp EEEESC-S-EEETTCCEEEEEEES---SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred EEEEcC-C-ccCCCCcEEEEEecc---CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecC
Confidence 334454 4 789999999999997 36679999999987653222111 11123357999999999999999999875
Q ss_pred Cc-----ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEE
Q psy2145 131 VG-----FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205 (808)
Q Consensus 131 ~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C 205 (808)
.. ..+..+.|.|... ..+|.+...+. ..+.+|++++|.|
T Consensus 86 ~~~~~~~~~s~~~~l~V~~~-----------------------------------~~~p~i~~~p~-~~v~~G~~v~L~C 129 (201)
T 1nkr_A 86 HSPYQVSAPSDPLDIVIIGL-----------------------------------YEKPSLSAQPG-PTVLAGENVTLSC 129 (201)
T ss_dssp TBTTCCCCCCCCEEEEEECS-----------------------------------SCCCEEEEESC-SEECTTCEEEEEE
T ss_pred CCCccccCCCCCEEEEeecc-----------------------------------CCCCceecCCC-CccCCCCeEEEEE
Confidence 31 2234566766532 24677777665 4789999999999
Q ss_pred EEeecCCCCeEEEEeeCCEEccCCCceEEEecC-ceEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 206 RLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNF-GFVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 206 ~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.+. + +.+.+.|+|+|..+...........+ ....|.|.+++ |+|.|+|.|.+..
T Consensus 130 ~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 130 SSR--S-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EES--S-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred eCC--C-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 983 3 56789999999877543222221111 13479999998 9999999999753
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=176.90 Aligned_cols=178 Identities=21% Similarity=0.294 Sum_probs=125.8
Q ss_pred eeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC--Ee------------cCCCCCeEEEeeCcEEEEEECCCC
Q psy2145 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KP------------LEDSSRITTKHDFGYVAMDLSHVR 570 (808)
Q Consensus 505 ~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~------------l~~~~~~~~~~~~~~~~L~I~~v~ 570 (808)
.+...+..+ .+.+|+.+.|.|.+ .+.|.+.|.|+|.+ .. .....++......+..+|.|.+++
T Consensus 3 ~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (213)
T 3r06_A 3 QMTQSPSSL-PASLGDRVTINCQA--SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLE 79 (213)
T ss_dssp CEEEECSEE-EECTTCCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eeEeCCCEE-EecCCCcEEEEEEe--CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCC
Confidence 444444444 68899999999999 78899999999832 11 112457777767777899999999
Q ss_pred CCCCEEEEEEEEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 571 AEDEGIYICKATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
.+|+|.|+|.|.|..|. ......|.|... ..+|.+...... ..+.
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~---------------------------------~~~p~v~~~~~~-~~~~ 125 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRA---------------------------------DAKPTVSIFPPS-SEQL 125 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCC---------------------------------CBCCEEEEECCC-HHHH
T ss_pred cccCEEEEEecccCCceEEcCCceEEEecc---------------------------------CCCceeeeeCCC-ceec
Confidence 99999999999998653 223355666321 124666655443 3456
Q ss_pred CCceEEEEEEEeeCCCC--CeEEEEEECCEEccCCC--cEEEEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 650 EGQSAHYDCRVVPVGDP--TMRFEWFVNGVELKMGS--RFHVQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~P--~p~i~W~~~g~~l~~~~--~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+|+.++|.|.+ .|.| .+.|.|+|||..+..+. ...... ..+ .+.|.|.....+|+|.|+|.|+|.....
T Consensus 126 ~~~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 126 GTGSATLVCFV--NNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp TTTEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred CCCCcEEEEEE--eeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 78899999999 5544 45999999999987541 111111 111 2468888888899999999999997544
Q ss_pred E
Q psy2145 721 V 721 (808)
Q Consensus 721 ~ 721 (808)
.
T Consensus 204 ~ 204 (213)
T 3r06_A 204 A 204 (213)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=181.26 Aligned_cols=175 Identities=20% Similarity=0.302 Sum_probs=126.4
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCC----CcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEEC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDP----TLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLS 567 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P----~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~ 567 (808)
+...+.++ .+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+ ....|+.+...++..+|.|.
T Consensus 4 v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (240)
T 1moe_A 4 LTQSPASL-AVSLGQRATMSCRA--GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIID 80 (240)
T ss_dssp EEEECSEE-EECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred eEeeCCeE-EecCCCCEEEEEeC--CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEc
Confidence 33344444 68999999999999 7888 7889999962 211 12457777777777899999
Q ss_pred CCCCCCCEEEEEEEEeCCee-EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 568 HVRAEDEGIYICKATNALGE-AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 568 ~v~~~D~G~Y~C~a~N~~G~-~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
+++.+|+|.|+|.|.|..+. ....+.|.|...+... .++.+...+ ...
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~------------------------------~~~~~~~~~-~~~ 129 (240)
T 1moe_A 81 PVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGG------------------------------GGEVQLQQS-GAE 129 (240)
T ss_dssp SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCC------------------------------CCCCEEEEC-CCE
T ss_pred CCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCC------------------------------CceEEEeCC-Cce
Confidence 99999999999999998664 3344667776532100 012233332 335
Q ss_pred cccCCceEEEEEEEeeCCCC--CeEEEEEEC--CEEcc-----------------CCCcEEEEEe--CCEEEEEEccCCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDP--TMRFEWFVN--GVELK-----------------MGSRFHVQHD--FGYVTLDITKCVP 703 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~ 703 (808)
.+.+|++++|.|.+ .|.| .+.|.|+|+ |..+. ...++.+..+ ....+|.|.++..
T Consensus 130 ~v~~G~~v~L~C~~--~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 207 (240)
T 1moe_A 130 LVEPGASVKLSCTA--SGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS 207 (240)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEeCCCcEEEEEEE--cCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCH
Confidence 68899999999999 6877 469999996 33221 2357777655 4567999999999
Q ss_pred CCcEEEEEEEEeC
Q psy2145 704 ADSGVYMCKAINR 716 (808)
Q Consensus 704 ~D~G~Y~C~A~N~ 716 (808)
+|+|.|+|.|.+.
T Consensus 208 ~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 208 EDTAVYYCAPFGY 220 (240)
T ss_dssp GGCEEEEEEECST
T ss_pred HHCEEEEEEEEec
Confidence 9999999999953
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=173.76 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=116.2
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee---cc---------------CcEEEEeeCCeEEEEEcccC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT---IG---------------HRFRPIHDFGYVALDIIDTI 116 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~---~~---------------~r~~~~~~~~~~~L~I~~~~ 116 (808)
.|..+ .+.+|++|+|.|.+.+ +.+.+.|.|+|+|..|. .+ .|+.+. ...+|.|.+++
T Consensus 4 ~p~~v-~~~~G~~v~L~C~~~~-~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~ 78 (193)
T 2if7_A 4 TPLMV-NGILGESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLK 78 (193)
T ss_dssp CCEEE-EEETTSCEEECCCCCC-CSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCC
T ss_pred CCeEE-EEEecCeEEEeccCCC-cccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCC
Confidence 45666 8899999999999974 24556999999987653 11 244433 23479999999
Q ss_pred cCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeec
Q psy2145 117 PEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIK 196 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~ 196 (808)
.+|+|.|+|.|.|..|.....+.|.|.... ..|.+.... ..+.
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~-----------------------------------~~p~i~~~~--~~~~ 121 (193)
T 2if7_A 79 MEDTGSYRAQISTKTSAKLSSYTLRILRQL-----------------------------------RNIQVTNHS--QLFQ 121 (193)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEECCC-----------------------------------EEEEEEECC--C---
T ss_pred cccCceEEEEEEecCCCeEEEEEEEEEccC-----------------------------------CCCeEecCc--eeec
Confidence 999999999999998877777888886421 124444333 2234
Q ss_pred CCC-eEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCC-CCcEEEEEEEEeCceeEEEE
Q psy2145 197 EGQ-RAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP-EDSGVYTCRAVNALGQAVTS 270 (808)
Q Consensus 197 ~G~-~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~~g~~~~~ 270 (808)
.|. +++|.|.+.+ ..|.+.|.|+++|..+..+. .|.|..... +|+|.|+|.|.|..|..+..
T Consensus 122 ~g~~~v~L~C~~~g-~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~ 185 (193)
T 2if7_A 122 NMTCELHLTCSVED-ADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFS 185 (193)
T ss_dssp CSSEEEEEEEEEES-CCTTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred CCCceEEEEEEEec-CCCceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence 565 8999999952 35688999999998875432 455654444 48999999999999987543
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=179.24 Aligned_cols=184 Identities=18% Similarity=0.277 Sum_probs=130.9
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC--E------------ecCCCCCeEEEeeCcEEEEEECCC
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--K------------PLEDSSRITTKHDFGYVAMDLSHV 569 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~------------~l~~~~~~~~~~~~~~~~L~I~~v 569 (808)
+.+...+..+ .+.+|+++.|.|.+ .+.|.+.+.|+|++ . ......++......+..+|.|.++
T Consensus 25 ~~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 101 (237)
T 3sob_L 25 IQMTQSPSSL-SASVGDRVTITCRA--SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL 101 (237)
T ss_dssp CCEEEECSEE-EEETTCCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEEeCCCeE-EEeCCCcEEEEEec--CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCC
Confidence 4455544444 68999999999999 78889999999842 1 112246777777777789999999
Q ss_pred CCCCCEEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccc
Q psy2145 570 RAEDEGIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEI 648 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 648 (808)
+.+|+|.|+|.|.|..+.. .....|.|...+ .+|.+...... ..+
T Consensus 102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------~~p~v~~~~~~-~~~ 147 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTV---------------------------------AAPSVFIFPPS-DEQ 147 (237)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEECCC---------------------------------BCCEEEEECCC-HHH
T ss_pred ChhhCeEEEEeeccCCceEEcCcEEEEEecCC---------------------------------CCCceEEeCCC-hhh
Confidence 9999999999999977632 233466665421 24666654443 345
Q ss_pred cCCceEEEEEEEeeCC-CC-CeEEEEEECCEEccCCC--cEEEEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 649 MEGQSAHYDCRVVPVG-DP-TMRFEWFVNGVELKMGS--RFHVQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g-~P-~p~i~W~~~g~~l~~~~--~~~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.+|+.++|.|.+ .| .| .+.|.|+|||..+..+. ...... .++ .+.|.|..+..+|+|.|+|.|+|....
T Consensus 148 ~~g~~v~l~C~~--~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 148 LKSGTASVVCLL--NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp HHHTEEEEEEEE--EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred ccCCceEEEEEE--cccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 579999999999 45 45 68999999999987531 101000 111 347999999999999999999999876
Q ss_pred eEEEEEE
Q psy2145 720 AVSSTSL 726 (808)
Q Consensus 720 ~~~s~~l 726 (808)
...+..+
T Consensus 226 ~~~~~~~ 232 (237)
T 3sob_L 226 SPVTKSF 232 (237)
T ss_dssp SCEEEEE
T ss_pred Cceeeee
Confidence 5444433
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=182.93 Aligned_cols=198 Identities=16% Similarity=0.242 Sum_probs=135.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EEe---e--------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RPV---T--------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~l---~--------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+...+.+.|.|||++ ..+ . ...|+.+..+ .+..+|.
T Consensus 30 ~~~p~~~-~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 30 LQQSGAE-LVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEECCCE-EEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EECCCCE-EEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 4567777 899999999999998421136789999953 211 1 1357776653 3567999
Q ss_pred EcccCcCCCeeEEEEEEecCcc---e--EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGF---A--EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~---~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
|.+++.+|+|.|.|.|.|..|. . ...+.|.|...+...... . . .....+|.+
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~--------------------~--~-~~~~~~~~~ 165 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGG--------------------G--S-GGGGSENVL 165 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC--------------------------------------CCCE
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCc--------------------c--C-CCCccceEE
Confidence 9999999999999999998761 1 133467776432100000 0 0 000235667
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------------CCCceEEEecCceEEEEEccCCCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------------SGSRFTETNNFGFVALDIMQCLPED 252 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~D 252 (808)
...+..+.+.+|++|+|.|.+ .+.+ +.+.||| +|..+. ...++......+..+|.|.+++.+|
T Consensus 166 ~~~p~~~~v~~G~~v~L~C~~--~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 242 (282)
T 1qok_A 166 TQSPAIMSASPGEKVTITCSA--SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAED 242 (282)
T ss_dssp EEECSEEEECTTCCEEEEEEE--SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred ecCCCEEEEcCCCcEEEEEEe--cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhH
Confidence 777888889999999999999 5666 7999999 666542 1356665555566689999999999
Q ss_pred cEEEEEEEEeCceeE-EEEEEEEEee
Q psy2145 253 SGVYTCRAVNALGQA-VTSGNLLVHS 277 (808)
Q Consensus 253 ~G~Y~C~a~n~~g~~-~~~~~l~V~~ 277 (808)
+|.|+|.|.|..+.. ...+.|.|..
T Consensus 243 sG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 243 AATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CEEEEEEEeeCCCceEeCCEEEEEec
Confidence 999999999854322 2346777764
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=182.36 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=136.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---e--------------eccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---V--------------TIGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l--------------~~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+...+.+.|.|||. +.. + ....|+.+..+ .+.++|.
T Consensus 6 v~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 84 (256)
T 3umt_A 6 LQQSGLE-LVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLE 84 (256)
T ss_dssp EEECCCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred EEccCce-EEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEE
Confidence 4455666 79999999999999842222679999983 221 1 02357776654 3567899
Q ss_pred EcccCcCCCeeEEEEEEec----CcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 112 IIDTIPEDSGTYTCRAVNL----VGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
|.+++.+|+|.|.|.|.|. .+.....+.|.|.....-... .........+|.+.
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~----------------------~~~~~~~~~~~~~~ 142 (256)
T 3umt_A 85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGG----------------------GGSGGGGSTDIQLT 142 (256)
T ss_dssp ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC-------------------------------------CCCCEE
T ss_pred ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccC----------------------cccCCCCccccEEE
Confidence 9999999999999999987 333344566777532100000 00000012367888
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceEEEecCceEEEEEccCCCCCc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..+..+.+.+|++|+|.|.+ .+.+.+.+.|||+ +..+. ...++.........+|.|.+++.+|+
T Consensus 143 ~~p~~~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 220 (256)
T 3umt_A 143 QSPSSLSASLGERVSITCRA--SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDF 220 (256)
T ss_dssp EECSEEEECTTCCEEEEEEE--SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred cCCCeEEEECCCCEEEEEEE--ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHC
Confidence 88888999999999999999 5677779999994 32221 13566666666677899999999999
Q ss_pred EEEEEEEEeCceeEE-EEEEEEEeeC
Q psy2145 254 GVYTCRAVNALGQAV-TSGNLLVHSK 278 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~-~~~~l~V~~~ 278 (808)
|.|+|.|.|..+... .-+.|.|...
T Consensus 221 G~Y~C~~~~~~~~~fg~gt~L~V~~~ 246 (256)
T 3umt_A 221 VDYYCLQYASSPPTFGGGTKLEIKRA 246 (256)
T ss_dssp SEEEEEECSSSSCEECCCEEEEEC--
T ss_pred EEEEEEEeeCCCcEECCCEEEEEECC
Confidence 999999998654333 2467888753
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-20 Score=181.44 Aligned_cols=175 Identities=15% Similarity=0.252 Sum_probs=121.0
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEecC-----------------CCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKPLE-----------------DSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++++|.|.+ .+.| .+.|.|+|+ |..+. ...|+.+..+ .+..+|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (219)
T 1c1e_H 11 LKKPGETVKISCKA--SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN 88 (219)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred EecCCCcEEEEEEE--eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence 58899999999999 5655 788999997 43321 1356666543 3456899999999
Q ss_pred CCCEEEEEEEEeCCee----EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 572 EDEGIYICKATNALGE----AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~----~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
+|+|.|.|.|.|..|. ....+.|.|...+. .+|.+...... ..
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~i~~~~~~-~~ 135 (219)
T 1c1e_H 89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT--------------------------------TPPSVYPLAPG-SA 135 (219)
T ss_dssp GGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC--------------------------------BCCEEEEECCC-SS
T ss_pred ccCEEEEEEEeccCcccceeecCceEEEEecCCC--------------------------------CCCeEEEecCc-cc
Confidence 9999999999998732 22345666654211 23555544332 35
Q ss_pred ccCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 648 IMEGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
+.+|+.++|.|.+ .| .|.| .|.|+|||..+.......+...+. .+.|.|. ....|.|.|+|.|.|..|....
T Consensus 136 ~~~g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~~~~~ 212 (219)
T 1c1e_H 136 AQTNSMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVAHPASSTKV 212 (219)
T ss_dssp SCCSSEEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEEEGGGTEEE
T ss_pred cccCCeEEEEEEc--ccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEEeCCCCccE
Confidence 7789999999999 67 8998 999999998753110000001111 2468884 4444679999999999998776
Q ss_pred EEEEE
Q psy2145 723 STSLK 727 (808)
Q Consensus 723 s~~l~ 727 (808)
...|.
T Consensus 213 ~~~i~ 217 (219)
T 1c1e_H 213 DKKIV 217 (219)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66554
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-19 Score=183.01 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=133.0
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC-----EEee---------ccCcEEEEeeCCeEEEEEcccC
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG-----RPVT---------IGHRFRPIHDFGYVALDIIDTI 116 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-----~~l~---------~~~r~~~~~~~~~~~L~I~~~~ 116 (808)
.+...|..+ .+.+|++|+|.|.+. +.|.+.|.|||++ ..+. ...|+.+..+++..+|.|.+++
T Consensus 14 ~v~~~p~~~-~v~~G~~v~L~C~~~--~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 90 (276)
T 3auv_A 14 QMTQSPSSL-SASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ 90 (276)
T ss_dssp CEEEECSEE-ECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEEeCCCeE-EEcCCCCEEEEeEcC--CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence 344567777 899999999999998 4677899999954 2222 1457887777778899999999
Q ss_pred cCCCeeEEEEEEecCcc-eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceee
Q psy2145 117 PEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEI 195 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v 195 (808)
.+|+|.|+|.|.|..+. ....+.|.|...+...... ......++.+...+....+
T Consensus 91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~------------------------~~~~~~p~~~~~~p~~~~v 146 (276)
T 3auv_A 91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEG------------------------RSGGGGSEVQLVESGGGLV 146 (276)
T ss_dssp GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------------------------------CCEEEEECCEEE
T ss_pred hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccc------------------------cccccCcceEEECCCceEe
Confidence 99999999999987554 2233566665332100000 0000123344555678889
Q ss_pred cCCCeEEEEEEEeecCCC--CeEEEEeeCC--EEc-----------------cCCCceEEEec--CceEEEEEccCCCCC
Q psy2145 196 KEGQRAHFECRLIPVSDN--TMKVEWFHNN--VPI-----------------KSGSRFTETNN--FGFVALDIMQCLPED 252 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p--~~~v~W~~~g--~~l-----------------~~~~~~~~~~~--~~~~~L~I~~~~~~D 252 (808)
.+|++++|.|.+. +.+ .+.|.|||++ ..+ ....++.+..+ .+..+|.|.+++.+|
T Consensus 147 ~~G~~v~L~C~~~--g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 224 (276)
T 3auv_A 147 QPGGSLRLSCAAS--GFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAED 224 (276)
T ss_dssp CTTCCEEEEEEEE--SSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred cCCCeEEEEEEec--CccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhH
Confidence 9999999999994 444 5899999963 221 11346655543 355689999999999
Q ss_pred cEEEEEEEEeCc---eeE--EEEEEEEEee
Q psy2145 253 SGVYTCRAVNAL---GQA--VTSGNLLVHS 277 (808)
Q Consensus 253 ~G~Y~C~a~n~~---g~~--~~~~~l~V~~ 277 (808)
+|.|+|.|.|.. +.. ...+.|.|..
T Consensus 225 sG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~ 254 (276)
T 3auv_A 225 TAVYYCARFVFFLPYAMDYWGQGTLVTVSS 254 (276)
T ss_dssp CEEEEEEEECSSTTCSCCCBCCCEEEEEC-
T ss_pred CEEEEEEEEcCcCCcCceEECCCEEEEEcc
Confidence 999999999973 221 1235777754
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=180.09 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=125.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCC-CCceEEEEeCC--EEee------------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFKNG--RPVT------------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~-p~~~v~W~~~g--~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
..|.++ .+.+|++++|.|.+.. +. +.+.|.|||++ ..+. ...|+....+.+..+|.|.+++.+
T Consensus 5 ~qp~~~-~v~~G~~v~L~C~v~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 82 (216)
T 2xzc_L 5 TQPPSV-SAAPGQKVTISCSGSS-SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTG 82 (216)
T ss_dssp BCCSEE-EECTTCCEEEEEECCT-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ECCCcE-EecCCCeEEEEEEeec-CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcc
Confidence 347777 8999999999999643 23 35799999943 2221 135777777777889999999999
Q ss_pred CCeeEEEEEEecCc--ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeec
Q psy2145 119 DSGTYTCRAVNLVG--FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIK 196 (808)
Q Consensus 119 D~G~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~ 196 (808)
|+|.|+|.|.|..+ .....+.|.|... ..+|.+...+....+.
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~P~v~~~~~~~~~~ 127 (216)
T 2xzc_L 83 DEADYYCGTWDSSLNPVFGGGTKLEIKRT-----------------------------------VAAPSVFIFPPSDEQL 127 (216)
T ss_dssp GCEEEEEEEECTTSCEEEBCCEEEEECCC-----------------------------------CBCCEEEEECCCHHHH
T ss_pred cCEEEEEEEEeCCCcceECCCEEEEEcCC-----------------------------------CCCCceEEeCCChhhc
Confidence 99999999999876 1223345666321 3467777655444445
Q ss_pred CCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE--EE-ecCce----EEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 197 EGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT--ET-NNFGF----VALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~--~~-~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
+|+.++|.|.+.+ ..|. ..|.|+|||.++..+.... .. ..++. ..|.|..+..+|+|.|+|.|.|......
T Consensus 128 ~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 128 KSGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp HTTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred cCCcEEEEEEEEe-EcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 7999999999964 2455 4999999999987651111 11 12222 2799999999999999999999765433
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-20 Score=181.26 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=141.1
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
.+|.|. .+.++ .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..|..+ .++.+....+...|.|.++..+|+|.|+|
T Consensus 18 ~~P~~~-~p~~~-~~~~G~~v~l~C~~--~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 93 (215)
T 3mtr_A 18 YAPKLQ-GPVAV-YTWEGNQVNITCEV--FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNC 93 (215)
T ss_dssp EEEEEE-CCSEE-EECTTCCEEEEEEE--EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEE
T ss_pred cCCccc-CCceE-EEECCCCEEEEEEE--eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEE
Confidence 477885 34443 68999999999999 79999999999999999876 56777766667799999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|.|..|.....+.|.|...|. +|..... ...+..+.|.|.
T Consensus 94 ~a~n~~g~~~~~~~l~v~~~P~---------------------------------~p~~~~~------~~~~~~~~l~w~ 134 (215)
T 3mtr_A 94 TAVNRIGQESLEFILVQADTPS---------------------------------SPSIDQV------EPYSSTAQVQFD 134 (215)
T ss_dssp EEECSSCEEEEEEEEEECCCCC---------------------------------CCEEEEE------EEETTEEEEEEE
T ss_pred EEEECCCceEEEEEEEECCCCC---------------------------------CCcceEE------EEecceEEEEEe
Confidence 9999999999999998876543 2332221 124677899997
Q ss_pred Eee--CCCCCe--EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 660 VVP--VGDPTM--RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 660 v~~--~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
... .|.|.+ .|.|+++|........+.+........|.|.++.+.|.|.|+|.|.|.+|....+..+.|..+|
T Consensus 135 ~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 135 EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp CCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred cCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 311 244544 5889998864321111111110111379999999999999999999999999988888888765
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=178.56 Aligned_cols=176 Identities=16% Similarity=0.276 Sum_probs=128.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC---EE--ee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG---RP--VT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g---~~--l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++++|.|.+.+ .|.+.|.|||.+ .+ +. ...|+......+..+|.|.+++.+
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 5 TQSPSSL-PASLGDRVTINCQASQ--DISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp EEECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeCCCEE-EecCCCcEEEEEEeCC--CcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 3446777 8999999999999994 578899999832 11 11 245787777778889999999999
Q ss_pred CCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 119 DSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|+|.|+|.|.|..+.. ...+.|.|... ..+|.+...+....+..
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~p~v~~~~~~~~~~~ 126 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRA-----------------------------------DAKPTVSIFPPSSEQLG 126 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCC-----------------------------------CBCCEEEEECCCHHHHT
T ss_pred cCEEEEEecccCCceEEcCCceEEEecc-----------------------------------CCCceeeeeCCCceecC
Confidence 9999999999875432 33455666321 45788888777777778
Q ss_pred CCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC--ceEE-EecCc----eEEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 198 GQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS--RFTE-TNNFG----FVALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~-~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
|+.++|.|.+.+...+.+.|.|+|||..+..+. .... ....| ...|.|.....+|+|.|+|.|.|....
T Consensus 127 ~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 127 TGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp TTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred CCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 999999999964332356999999999987542 1111 11122 135888888889999999999997543
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=180.10 Aligned_cols=173 Identities=18% Similarity=0.287 Sum_probs=127.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC----CceEEEEeC--CEE---ee---------ccCcEEEEeeCCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS----NLKVEWFKN--GRP---VT---------IGHRFRPIHDFGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p----~~~v~W~~~--g~~---l~---------~~~r~~~~~~~~~~~L~I~~ 114 (808)
...|..+ .+.+|++|+|.|.+.+ .| .+.|.|||+ |.. +. ...|+.+..+++.++|.|.+
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (240)
T 1moe_A 5 TQSPASL-AVSLGQRATMSCRAGE--SVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP 81 (240)
T ss_dssp EEECSEE-EECTTSCEEEEEEESS--CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred EeeCCeE-EecCCCCEEEEEeCCC--ccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence 4456777 8999999999999984 55 789999995 221 11 13578877777788999999
Q ss_pred cCcCCCeeEEEEEEecCcc-eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCce
Q psy2145 115 TIPEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNC 193 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 193 (808)
++.+|+|.|+|.|.|..+. ....+.|.|..... ...++.+...+...
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~--------------------------------~~~~~~~~~~~~~~ 129 (240)
T 1moe_A 82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGS--------------------------------GGGGEVQLQQSGAE 129 (240)
T ss_dssp CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSC--------------------------------CCCCCCEEEECCCE
T ss_pred CChhhCEEEEEEEccCCceeecCCEEEEEecCCC--------------------------------CCCceEEEeCCCce
Confidence 9999999999999998654 33456777754221 01234455667778
Q ss_pred eecCCCeEEEEEEEeecCCC--CeEEEEeeC--CEEcc-----------------CCCceEEEec--CceEEEEEccCCC
Q psy2145 194 EIKEGQRAHFECRLIPVSDN--TMKVEWFHN--NVPIK-----------------SGSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 194 ~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
.+.+|++++|.|.+. +.| .+.|.|+|+ |..+. ...++.+..+ .+..+|.|.+++.
T Consensus 130 ~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 207 (240)
T 1moe_A 130 LVEPGASVKLSCTAS--GFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS 207 (240)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEeCCCcEEEEEEEc--CccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCH
Confidence 899999999999994 554 469999995 33221 1235555432 4556899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|+|.|+|.|.+
T Consensus 208 ~D~G~Y~C~a~~ 219 (240)
T 1moe_A 208 EDTAVYYCAPFG 219 (240)
T ss_dssp GGCEEEEEEECS
T ss_pred HHCEEEEEEEEe
Confidence 999999999985
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-20 Score=179.93 Aligned_cols=162 Identities=14% Similarity=0.229 Sum_probs=111.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcc-cCcCCCeeEEEEEEecCcceEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIID-TIPEDSGTYTCRAVNLVGFAEVQAT 139 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~-~~~~D~G~Y~C~a~n~~g~~~~~~~ 139 (808)
.+.+|++++|.|.+.+ +. .|.|+|||..|..+. ++ +|.|.+ ++.+|+|.|+|.|.|..|.......
T Consensus 10 v~~~G~~v~L~C~~~~---~~-~i~W~k~g~~l~~~~-------~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 76 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS---DE-NLKWEKNGQELPQKH-------DK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76 (186)
T ss_dssp EEEETTEEEEECSSCC---CT-TCEEEETTEEECSCC-------CS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred EEeCCcEEEEEEeCCC---CC-ceEEEECCEECCCCC-------CC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence 3468999999999973 33 499999999987641 11 699999 9999999999999999988666666
Q ss_pred EEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe----ecC---ceeecCCCeEEEEEEEeecCC
Q psy2145 140 LQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT----SLK---NCEIKEGQRAHFECRLIPVSD 212 (808)
Q Consensus 140 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~----~~~---~~~v~~G~~v~L~C~~~~~~~ 212 (808)
+.|............ + .......+|.+.. ... ...+.+|+++.|.|.+
T Consensus 77 ~~v~~~~~~~~~~~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----- 131 (186)
T 1jbj_A 77 ARVGSADDAKKDAAK------K--------------DDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----- 131 (186)
T ss_dssp CCCCSCCCCCCCCCC------C--------------CCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-----
T ss_pred EEEeccccccccccc------c--------------cccccCCccccccccccccccccceecCCCCeEEEEeeC-----
Confidence 655432211000000 0 0000001111110 000 1235599999999976
Q ss_pred CCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeE
Q psy2145 213 NTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267 (808)
Q Consensus 213 p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 267 (808)
|.+.|.|+|||..+..... ..+ +|.|.++..+|+|.|+|.|.|..|..
T Consensus 132 p~p~i~W~k~g~~i~~~~~-----~~~--~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 132 TDKTIKWLKDGSIISPLNA-----TKN--TWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp SCSCEEEEETTEECCCSSC-----CSS--CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred CCCeEEEEECCEECcccCC-----Ccc--eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 5679999999999875432 112 79999999999999999999998876
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-20 Score=184.11 Aligned_cols=185 Identities=15% Similarity=0.233 Sum_probs=109.9
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+.+|++++|.|.+ |.+.|+|+|||..+... .... .+|.|.+++.+|+|.|+|.+.|.. +. .+.|
T Consensus 14 ~~~~G~~v~L~C~~-----p~~~i~W~k~g~~l~~~-----~~~~--~~L~i~~v~~~DsG~Y~C~~~~~~-s~--~~~v 78 (204)
T 1sy6_A 14 DYQEDGSVLLTCDA-----EAKNITWFKDGKMIGFL-----TEDK--KKWNLGSNAKDPRGMYQCKGSQNK-SK--PLQV 78 (204)
T ss_dssp CCCSSSEEEEEECS-----CSSEEEEEETTEEEEEE-----ESSC--CCEEEEEGGGCCEEEEEEESSSSC-CC--CEEE
T ss_pred eecCCCeEEEEEcC-----CCCEEEEEECCEECCCC-----CCCC--CeEEeCCCCcCCCEEEEEEecCCC-Ce--eEEE
Confidence 35789999999964 78899999999988532 0112 269999999999999999976542 22 2444
Q ss_pred EEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc-CCceEEEEEEEeeCCCCCeEEEEE
Q psy2145 595 KIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM-EGQSAHYDCRVVPVGDPTMRFEWF 673 (808)
Q Consensus 595 ~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~-~G~~v~l~C~v~~~g~P~p~i~W~ 673 (808)
.|........... ............. . .........|.+... +..+. +|++++|.|. |.|.|.|.|+
T Consensus 79 ~v~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~---p~~v~~~G~~v~L~C~----g~p~p~i~W~ 146 (204)
T 1sy6_A 79 YYRMGSADDAKKD--AAKKDDAKKDDAK--K-DGSDGNEEMGGITQT---PYKVSISGTTVILTCP----QYPGSEILWQ 146 (204)
T ss_dssp EEEC-----------------------------------------CC---CCEEEEETTEEEEECS----CCCSSCEEEE
T ss_pred EEEEecccccccc--ccccccccccccc--c-ccccccccccceecC---CceeeecCCcEEEEcC----CCCCCceEEE
Confidence 4431110000000 0000000000000 0 000000011222211 12344 8999999994 7899999999
Q ss_pred ECCEEccCCC-cEEEEEeCCEEEEEEccC-CCCCcEEEEEEEEeCCcce-EEEEEEEE
Q psy2145 674 VNGVELKMGS-RFHVQHDFGYVTLDITKC-VPADSGVYMCKAINRAGEA-VSSTSLKV 728 (808)
Q Consensus 674 ~~g~~l~~~~-~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~s~~l~V 728 (808)
|||..+.... +..+....+ +|.|.++ ..+|+|.|+|.|.|..|.. +....|.|
T Consensus 147 k~~~~l~~~~~~~~~~~~~~--~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 147 HNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ETTEEESCCTTCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ECCEECCCccCCceEecCCC--EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 9999987542 222222344 8999999 9999999999999999973 45555554
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=177.26 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=133.7
Q ss_pred ecCceeecCCCeEEEEEEEeecCCC--CeEEEEeeCC--EEc-----------------cCCCceEEEec--CceEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNN--VPI-----------------KSGSRFTETNN--FGFVALDI 245 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~g--~~l-----------------~~~~~~~~~~~--~~~~~L~I 245 (808)
.+..+.+.+|++|+|.|.+. +.| .+.|.|+|++ ..+ ....++.+..+ .+..+|.|
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 85 (247)
T 2ghw_B 8 QSGGGVVQPGKSLRLSCAAS--GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM 85 (247)
T ss_dssp EECCEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred ecCCEEEecCCcEEEEEEec--cccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence 34568899999999999994 555 6789999942 111 12346665543 45678999
Q ss_pred ccCCCCCcEEEEEEEEeCcee--EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCC
Q psy2145 246 MQCLPEDSGVYTCRAVNALGQ--AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMR 323 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~ 323 (808)
.+++.+|+|.|+|.|.|..+. ....+.|.|...+.... . . .......++.+...+.
T Consensus 86 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~--~--~------------------~~~~~~~~~~~~~~~~ 143 (247)
T 2ghw_B 86 NSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSG--G--G------------------GSGGGGSETTLTQSPA 143 (247)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC----------------------------------CCCCEEEECS
T ss_pred CcCCHHHCEEEEEeeeccCCccccCCceEEEEeccccccc--c--c------------------ccCCCCcceEEEccCC
Confidence 999999999999999997433 23345777764321000 0 0 0000112455666666
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEE--CCEecc------------CCCcEEEEeeCcEEEEEEccCCCCCCeEEE
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLR--NGVPIQ------------ASNRVSTMHDFGYVALNFKYTYPEDSGTYT 389 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~ 389 (808)
...+.+|+.++|.|.+ .+.|.+.|.|+| +|..+. ...++.+..++...+|.|.++..+|+|.|+
T Consensus 144 ~~~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 221 (247)
T 2ghw_B 144 TLSLSPGERATLSCRA--SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYY 221 (247)
T ss_dssp EEEECTTSCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEE
T ss_pred EEEecCCCcEEEEEEe--CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEE
Confidence 7788999999999999 788888999999 665431 235666655566678999999999999999
Q ss_pred EEEEcCCcceEE-EEEEEEE
Q psy2145 390 CRAVNELGEAVT-SSTLFVE 408 (808)
Q Consensus 390 C~a~n~~g~~~~-~~~l~V~ 408 (808)
|.|.|..+.... .+.|.|.
T Consensus 222 C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 222 CQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEECSSSSCEECCCEEEEEC
T ss_pred EEEccCCCceEcCCEEEEEC
Confidence 999986443332 3566665
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=179.87 Aligned_cols=180 Identities=19% Similarity=0.337 Sum_probs=121.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe---------------eccCcEEEEe-eCCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV---------------TIGHRFRPIH-DFGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l---------------~~~~r~~~~~-~~~~~~L~I~~ 114 (808)
...|..+ .+.+|++|+|.|. . +.|.+.|.|||+ +..+ ....|+.+.. +.+..+|.|.+
T Consensus 4 ~q~p~~~-~v~~G~~v~L~C~-~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 79 (238)
T 2p1y_A 4 TQSPRNK-VAVTGGKVTLSCN-Q--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL 79 (238)
T ss_dssp EEECSEE-EEETTCCEEEEEE-E--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred eECccce-EEeCCCEEEEEee-c--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence 3456777 8999999999999 4 467889999995 2211 1134666654 33456899999
Q ss_pred cCcCCCeeEEEEEEecCcce-----EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 115 TIPEDSGTYTCRAVNLVGFA-----EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
++.+|+|.|+|.|.|..|.. ...+.|.|........ +......+.+...
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~--------------------------p~~~~~~~~v~~~ 133 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK--------------------------KDAAKKDGQVRQS 133 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHH--------------------------HHHHHHHTCCEEE
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCc--------------------------CCcccceeeEEcc
Confidence 99999999999999876531 1234566643211000 0000011256667
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--EE---c---------cCCCceEEE--ecCceEEEEEccCCCCCc
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VP---I---------KSGSRFTET--NNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~~---l---------~~~~~~~~~--~~~~~~~L~I~~~~~~D~ 253 (808)
+..+.+.+|++++|.|.+ .+.|.+.+.|+|++ .. + ....++... ...+..+|.|.+++.+|+
T Consensus 134 p~~~~v~~G~~v~L~C~~--~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~ 211 (238)
T 2p1y_A 134 PQSLTVWEGETAILNCSY--ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS 211 (238)
T ss_dssp CSEEEEETTSCEEEEEEC--CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGC
T ss_pred CceEEEeCCCeEEEEEEE--ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHC
Confidence 778889999999999999 57788899999964 11 1 113455543 234456899999999999
Q ss_pred EEEEEEEEeCc
Q psy2145 254 GVYTCRAVNAL 264 (808)
Q Consensus 254 G~Y~C~a~n~~ 264 (808)
|.|+|.|.|..
T Consensus 212 G~Y~C~a~n~~ 222 (238)
T 2p1y_A 212 ATYFCAAIDTN 222 (238)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEeeCC
Confidence 99999999973
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-20 Score=184.30 Aligned_cols=172 Identities=9% Similarity=0.057 Sum_probs=118.8
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE-EEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+. ..+.+|++|+|.|.+ . .+.+.+.|||+|..+....... .........|.|.+++.+|+|.|+|.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~--~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWS--D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY 80 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEE--S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEec--C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence 45677877775 678899999999998 3 3467899999987653211000 00112334899999999999999999
Q ss_pred EEeCce-----eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEE
Q psy2145 260 AVNALG-----QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAH 334 (808)
Q Consensus 260 a~n~~g-----~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~ 334 (808)
+.|..+ ..+..+.|.|... ..+|.+...+. ..+.+|+.++
T Consensus 81 a~~~~~~~~~s~~S~~~~L~V~~~----------------------------------~~~P~l~~~p~-~~V~~G~~vt 125 (257)
T 1b6u_A 81 GSVTHSPYQLSAPSDPLDIVITGL----------------------------------YEKPSLSAQPG-PTVLAGESVT 125 (257)
T ss_dssp EECSSCTTSCCCCCCCEEEEEECS----------------------------------SCCCEEECSSC-TTCBTTCEEE
T ss_pred EeccCCCccccccCCCEEEecccC----------------------------------CCCcceEccCC-CccCCCCEEE
Confidence 987432 2344567777642 12556554443 3578999999
Q ss_pred EEEEEeecCCCccEEEEEECCEeccCCCcEEEEee-CcEEEEEEccCCCCCCeEEEEEEEcCC
Q psy2145 335 FEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD-FGYVALNFKYTYPEDSGTYTCRAVNEL 396 (808)
Q Consensus 335 l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 396 (808)
|.|.+ .+. .+.+.|+|+|..+....+...... .....|.|.++. |+|.|+|.|.|..
T Consensus 126 L~C~~--~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~ 183 (257)
T 1b6u_A 126 LSCSS--RSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD 183 (257)
T ss_dssp EEEEC--SSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred EEEeC--CCC-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence 99997 554 478999999987754332111111 113479999998 9999999999763
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=179.59 Aligned_cols=183 Identities=13% Similarity=0.157 Sum_probs=130.1
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.+|.|...+.. .+.+|++|+|.|.+ .+ +...+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+
T Consensus 6 ~kP~i~~~P~~--~v~~G~~VtL~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 79 (242)
T 1p6f_A 6 PKPFIWAEPHF--MVPKEKQVTICCQG--NY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 79 (242)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEeeCCC--ccCCCCcEEEEEee--CC-CCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEE
Confidence 46777766655 58999999999997 43 45689999999876421000 001122347999999999999999999
Q ss_pred EeCCeeE--EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEE
Q psy2145 582 TNALGEA--VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCR 659 (808)
Q Consensus 582 ~N~~G~~--~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~ 659 (808)
.|..|.. +..+.|.|... +.+|.+..... ..+.+|++++|.|.
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~---------------------------------~~~P~i~~~p~--~~v~~G~~vtL~C~ 124 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEM---------------------------------YDTPTLSVHPG--PEVISGEKVTFYCR 124 (242)
T ss_dssp EETTEECCCCCCEEEEEECC---------------------------------SCCCEEEEESC--SEEETTCEEEEEEE
T ss_pred ecCCccccCCcceEEEeecc---------------------------------cCCCceEccCC--CccCCCCcEEEEEe
Confidence 9976643 34466666542 12466664432 35889999999999
Q ss_pred EeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC---cceEEEEEEEEEeCC
Q psy2145 660 VVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA---GEAVSSTSLKVKSKS 732 (808)
Q Consensus 660 v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~---G~~~~s~~l~V~~~p 732 (808)
+ .+. .+.+.|+|||..+.. ..........|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.+.+
T Consensus 125 ~--~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~ 193 (242)
T 1p6f_A 125 L--DTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI 193 (242)
T ss_dssp C--TTS-CSEEEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred c--CCC-CCEEEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence 8 454 569999999987653 12223456789999999999999999999975 234556788888654
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=176.89 Aligned_cols=201 Identities=14% Similarity=0.213 Sum_probs=136.1
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Ee-------------eccCcEEEEee--CCeEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PV-------------TIGHRFRPIHD--FGYVA 109 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l-------------~~~~r~~~~~~--~~~~~ 109 (808)
...+..|..+ .+.+|++|+|.|.+.+...+.+.|.|||.. . .+ ....|+.+..+ .+.++
T Consensus 9 ~v~~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (257)
T 3gkz_A 9 EVQLQESGPS-LVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY 87 (257)
T ss_dssp CEEEEEECCS-EECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred cEEEECCCCe-EEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence 3445667777 799999999999999633457899999932 1 11 12357776654 45678
Q ss_pred EEEcccCcCCCeeEEEEEEecCc----ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCe
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVG----FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 185 (808)
|.|.+++.+|+|.|+|.|.|..+ .....+.|.|......... .......+|.
T Consensus 88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~------------------------~~~~~~~~~~ 143 (257)
T 3gkz_A 88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGG------------------------GSGGGGSQIV 143 (257)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------------------------------CTTCCCCCC
T ss_pred EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhccc------------------------ccCCCccceE
Confidence 99999999999999999998622 1233456666532110000 0001134567
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeC--CEEcc------------CCCceEEEecCceEEEEEccCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHN--NVPIK------------SGSRFTETNNFGFVALDIMQCLP 250 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~ 250 (808)
+...+....+.+|++|+|.|.+ .+.+.+ .+.|+|+ +..+. ...++......+..+|.|.+++.
T Consensus 144 ~~~~p~~~~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 221 (257)
T 3gkz_A 144 LTQSPAIMSASPGEKVTLTCSA--SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA 221 (257)
T ss_dssp EECSCSEEEECTTCCEEEEEEE--SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEcCCceEEEeCCCcEEEEEEE--ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh
Confidence 7777888899999999999999 466666 8999993 33221 12456555555667899999999
Q ss_pred CCcEEEEEEEEeCceeEEE-EEEEEEee
Q psy2145 251 EDSGVYTCRAVNALGQAVT-SGNLLVHS 277 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~g~~~~-~~~l~V~~ 277 (808)
+|+|.|+|.|.|.....-. -..|.|..
T Consensus 222 ~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 222 EDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred HHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 9999999999885433222 35677764
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=175.99 Aligned_cols=173 Identities=16% Similarity=0.219 Sum_probs=121.4
Q ss_pred cccCCCceEEEEEEeeCCCC-CcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP-TLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
.+.+|++++|.|.+. .+.+ .+.|.|+|++ ..+ ....++.....++..+|.|.+++.+|+|.|+|
T Consensus 11 ~v~~G~~v~L~C~v~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 89 (216)
T 2xzc_L 11 SAAPGQKVTISCSGS-SSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC 89 (216)
T ss_dssp EECTTCCEEEEEECC-TTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCCeEEEEEEee-cCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEE
Confidence 688999999999952 3343 5789999953 222 11357777767777899999999999999999
Q ss_pred EEEeCCe--eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 580 KATNALG--EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 580 ~a~N~~G--~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
.|.|..| .......|.|...+ .+|.+...... ..+.+|+.++|.
T Consensus 90 ~~~~~~~~~~~~~~~~l~V~~~~---------------------------------~~P~v~~~~~~-~~~~~g~~v~L~ 135 (216)
T 2xzc_L 90 GTWDSSLNPVFGGGTKLEIKRTV---------------------------------AAPSVFIFPPS-DEQLKSGTASVV 135 (216)
T ss_dssp EEECTTSCEEEBCCEEEEECCCC---------------------------------BCCEEEEECCC-HHHHHTTEEEEE
T ss_pred EEEeCCCcceECCCEEEEEcCCC---------------------------------CCCceEEeCCC-hhhccCCcEEEE
Confidence 9999886 22223456664211 24666554333 233469999999
Q ss_pred EEEeeCC-CCCe-EEEEEECCEEccCCCcE--EEEE-eCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 658 CRVVPVG-DPTM-RFEWFVNGVELKMGSRF--HVQH-DFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 658 C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~--~~~~-~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
|.+ .| .|.+ .|.|+|||+.+..+... .... .++ .+.|.|..+..+|+|.|+|.|.|.........
T Consensus 136 C~~--~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 209 (216)
T 2xzc_L 136 CLL--NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK 209 (216)
T ss_dssp EEE--EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred EEE--EeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEE
Confidence 999 56 5654 99999999998765111 1111 111 24799999999999999999999986654333
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=185.76 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=53.8
Q ss_pred cccCCCceEEEEEEeeCCCCCc--EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCee-----
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGE----- 587 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----- 587 (808)
.+.+|+.++|+|.+. .+.|.. .|+|||+++.|..... .......+|.+.....+|.+.|+|+|.|..+.
T Consensus 97 ~~~~G~~~~LtC~v~-g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l 172 (291)
T 1mq8_A 97 WQPVGKNLTLRCQVE-GGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172 (291)
T ss_dssp BCCSSCCCEEEEEEC-CCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCE
T ss_pred cccCCCCEEEEEEec-CccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCcc
Confidence 378899999999994 445543 6999999988753221 01123346888888788888999999997652
Q ss_pred ---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCC
Q psy2145 588 ---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG 664 (808)
Q Consensus 588 ---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g 664 (808)
.+....|.|...|.. .|.+. .+..+.+|+.++|.|.+ .|
T Consensus 173 ~~~~s~~~~L~V~~~P~~--------------------------------~~~~~----~p~~l~eG~~v~l~C~~--~g 214 (291)
T 1mq8_A 173 FENTSAPYQLQTFVLPAT--------------------------------PPQLV----SPRVLEVDTQGTVVCSL--DG 214 (291)
T ss_dssp EEECCCCEECBC--------------------------------------------------------------------
T ss_pred ccccccceEEEEEecCCC--------------------------------Cceec----CCcCccCCCeEEEEEEc--CC
Confidence 233345555543211 01111 12357899999999999 78
Q ss_pred CCCe---EEEEEECCEEccCCCcEEEEEeCCEEEEEEccC---CCCC--cEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 665 DPTM---RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKC---VPAD--SGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 665 ~P~p---~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v---~~~D--~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
.|++ .|.|++||+.+.... ..+++ .+.+... ..+| .+.|+|.|.|.....++.-.|+|..-|
T Consensus 215 ~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 215 LFPVSEAQVHLALGDQRLNPTV----TYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCCcccEEEEEECCEecCcee----eecCC--eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 7554 699999999987531 11222 2222222 3434 667778888866667777788887543
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-20 Score=184.81 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=125.8
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee------------ccCcEEEEeeCCeEEEEEcccCcCCC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT------------IGHRFRPIHDFGYVALDIIDTIPEDS 120 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D~ 120 (808)
.|..+ .+.+|++++|.|.+. +.|.+.|.|||+ |..+. ...|+.+..+.+..+|.|.+++.+|+
T Consensus 5 qp~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 81 (212)
T 1nfd_E 5 QPSSA-SVTVGETVKITCSGD--QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE 81 (212)
T ss_dssp CCSEE-EEETTSCCCEEEEET--TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred CCCeE-EEeCCCcEEEEEecC--CCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence 37777 899999999999987 466678999984 33331 14678777777788999999999999
Q ss_pred eeEEEEEEecCcce---EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 121 GTYTCRAVNLVGFA---EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 121 G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|.|+|.|.|..+.. .....|.|.... ..+|.+...+....+.+
T Consensus 82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~----------------------------------~~~p~v~~~~~~~~~~~ 127 (212)
T 1nfd_E 82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGP----------------------------------KSSPKVTVFPPSPEELR 127 (212)
T ss_dssp SEEEEEEEETTTTEEEECCCEEEEEECCC----------------------------------CBCCEEECCCCCHHHHH
T ss_pred EEEEEEEEcccCcccccCCceEEEEccCC----------------------------------CCCCEEEeeCCchHhcc
Confidence 99999999732211 223455554211 34677776665555678
Q ss_pred CCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE-E-EecCc---eEEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 198 GQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT-E-TNNFG---FVALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~-~-~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
|+.++|.|.+.+ ..|. +.|.|+|||.++..+.... . ...++ ...|.|.++..+|+|.|+|.|.|..+.
T Consensus 128 g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 128 TNKATLVCLVND-FYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp TTEECCCEEEEE-EBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred CCceEEEEEEEe-eECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 999999999964 2244 7999999999987543211 0 11111 125999999999999999999997664
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-19 Score=173.72 Aligned_cols=171 Identities=14% Similarity=0.155 Sum_probs=120.6
Q ss_pred ccCCCCcEEEEEEEeeC--CCCCceEEEEeCCEEeec------------cCcEEEEeeCCeEEEEEcccCcCCCeeEEEE
Q psy2145 61 NLRERGHAHFECKLEPV--TDSNLKVEWFKNGRPVTI------------GHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~--~~p~~~v~W~~~g~~l~~------------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
.+.+|++++|.|.+.+. +.|.+.+.|++++..+.. ..|..+. ..+..+|.|.+++.+|+|.|+|.
T Consensus 5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEEEE
Confidence 68899999999999631 236679999999988731 2233331 22345899999999999999999
Q ss_pred EEecCcce-----EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeE
Q psy2145 127 AVNLVGFA-----EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRA 201 (808)
Q Consensus 127 a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v 201 (808)
|.|..|.. ...+.|.|... ...|.+.... ...|+.+
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~-----------------------------------~~~p~~~~~~----~~~g~~~ 124 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKAD-----------------------------------FPTPSISDFE----IPTSNIR 124 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECC-----------------------------------CCCCEEEEEE----CSSTTEE
T ss_pred EEcCCCCccccccccEEEEEEcCC-----------------------------------CCCCceEecc----CCCCCeE
Confidence 99987654 34566666532 1234443322 2459999
Q ss_pred EEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-cCceEE-EEEccCCCCCcEEEEEEEEeCceeEEEEEE
Q psy2145 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-NFGFVA-LDIMQCLPEDSGVYTCRAVNALGQAVTSGN 272 (808)
Q Consensus 202 ~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~-L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 272 (808)
+|.|.+. .+.|.+.|.|+|||..+.......... +++... ..+..+..+|.|.|+|.|.|..|..+....
T Consensus 125 ~l~C~~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 125 RIICSTS-GGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196 (201)
T ss_dssp EEEEEEE-EESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred EEEEecC-CccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence 9999994 278899999999999987553333232 324322 244566679999999999999988776544
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=180.16 Aligned_cols=187 Identities=17% Similarity=0.281 Sum_probs=124.6
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCE--------------ecCCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEK--------------PLEDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~--------------~l~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
+...+..+ .+.+|++|+|.|.+ .+.|.+.+.|+|+.. ......++.....++.++|.|.+++.
T Consensus 7 v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (250)
T 3esu_F 7 LIQSTSSL-SASLGDRVTISCRA--SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ 83 (250)
T ss_dssp EECSCSEE-EECTTCCEEEEEEE--SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEecCCEE-EeeCCCcEEEEEEe--cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence 34444443 58899999999999 889999999998531 11224677777777778999999999
Q ss_pred CCCEEEEEEEEeCCeeEE-EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 572 EDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~-~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
+|+|.|.|.|.|..+... ....|.|...+...+... . ... .......|.+...+. ...+.+
T Consensus 84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~--~-----------~~~----~~~~~~~~~~~~~~~-~~~v~~ 145 (250)
T 3esu_F 84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGG--S-----------GGG----GSGGGGSEVQLQQSG-PELVKP 145 (250)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC-----------------------------------------CEECC-CEEECT
T ss_pred hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccc--c-----------ccc----cccCcccceEEecCC-ceEEcC
Confidence 999999999999866432 234566654321000000 0 000 000001122222322 356889
Q ss_pred CceEEEEEEEeeCCCC--CeEEEEEEC--CEEcc-----------------CCCcEEEEEe--CCEEEEEEccCCCCCcE
Q psy2145 651 GQSAHYDCRVVPVGDP--TMRFEWFVN--GVELK-----------------MGSRFHVQHD--FGYVTLDITKCVPADSG 707 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P--~p~i~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~~D~G 707 (808)
|++++|.|.+ .|.| .+.|.|||+ |..+. ...|+.+..+ ....+|.|.++..+|+|
T Consensus 146 G~~v~L~C~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG 223 (250)
T 3esu_F 146 GASVKISCKD--SGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSA 223 (250)
T ss_dssp TCCEEEEEEC--CSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred CceEEEEEEe--cCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCE
Confidence 9999999999 6777 889999997 54331 1367777655 45678999999999999
Q ss_pred EEEEEEEe
Q psy2145 708 VYMCKAIN 715 (808)
Q Consensus 708 ~Y~C~A~N 715 (808)
.|+|.|.|
T Consensus 224 ~Y~C~~~~ 231 (250)
T 3esu_F 224 VYFCARSG 231 (250)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999998
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=187.08 Aligned_cols=185 Identities=17% Similarity=0.294 Sum_probs=125.6
Q ss_pred eeeecCCCcccccCCCceEEEEEEeeC---CCCCcEEEEEECCEecCCC------------------CCeEEEee--CcE
Q psy2145 505 VFTKPLQNIDAVEEGKNAHFSCRLIPV---GDPTLKVEWFRNEKPLEDS------------------SRITTKHD--FGY 561 (808)
Q Consensus 505 ~f~~~~~~~~~v~~G~~v~l~C~v~~~---g~P~~~v~W~k~g~~l~~~------------------~~~~~~~~--~~~ 561 (808)
.+..+...+ .+.+|+.+.|.|.+ . +.|.+.|.|+|++...... .++.+..+ .+.
T Consensus 7 ~v~~~~~~~-~v~~G~~v~L~C~~--~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 83 (268)
T 3mj6_A 7 GLTVSSPQL-RVHVGESVLMGCVV--QRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND 83 (268)
T ss_dssp -----CCEE-EEETTCCEEECCBC--CCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTB
T ss_pred ccccCCCce-EEecCCcEEEEEEe--ecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCE
Confidence 344444444 68899999999998 5 7888999999976533221 33332211 122
Q ss_pred EEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 562 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.+|.|.+++.+|+|.|+|.|.|..+....+..+.+...+. .|.
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~---------------------------------~p~---- 126 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE---------------------------------EPR---- 126 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC---------------------------------CCS----
T ss_pred EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc---------------------------------CCC----
Confidence 4799999999999999999999876654444444443221 122
Q ss_pred cCCCccccCCceEEEEEEEee-CCCCCeEEEEEEC-CEEccC-----------------C----CcEEEEE--eCCEEEE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVP-VGDPTMRFEWFVN-GVELKM-----------------G----SRFHVQH--DFGYVTL 696 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~-~g~P~p~i~W~~~-g~~l~~-----------------~----~~~~~~~--~~~~~~L 696 (808)
...+.+|+.+.|.|.+.. .|.|.+.|.|+++ |..+.. + .++.+.. .....+|
T Consensus 127 ---~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 203 (268)
T 3mj6_A 127 ---DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI 203 (268)
T ss_dssp ---EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCE
T ss_pred ---ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEE
Confidence 245778999999999832 4779999999994 422111 1 1222111 1234589
Q ss_pred EEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 697 DITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 697 ~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
.|.++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus 204 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 239 (268)
T 3mj6_A 204 KLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239 (268)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred EECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence 999999999999999999999999999999995443
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=186.54 Aligned_cols=181 Identities=14% Similarity=0.199 Sum_probs=124.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEee-CCCCCceEEEEeCCEEeec------------------cCcEEEEe--eCCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEP-VTDSNLKVEWFKNGRPVTI------------------GHRFRPIH--DFGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~-~~~p~~~v~W~~~g~~l~~------------------~~r~~~~~--~~~~~~L~ 111 (808)
...|..+ .+.+|++++|.|.+.. .+.+.+.|.|+|++..... ..|+.+.. ..+..+|.
T Consensus 9 ~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 87 (268)
T 3mj6_A 9 TVSSPQL-RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLL 87 (268)
T ss_dssp ---CCEE-EEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEE
T ss_pred ccCCCce-EEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEE
Confidence 3455666 8999999999999872 1367789999996542211 13444321 12335799
Q ss_pred EcccCcCCCeeEEEEEEecCcceEEE--EEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGFAEVQ--ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
|.+++.+|+|.|+|.|.|..+..... +.|.|.. ..
T Consensus 88 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-------------------------------------------~~ 124 (268)
T 3mj6_A 88 LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP-------------------------------------------EE 124 (268)
T ss_dssp ECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-------------------------------------------CC
T ss_pred ECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec-------------------------------------------cC
Confidence 99999999999999999976655444 4444431 02
Q ss_pred cCceeecCCCeEEEEEEEee-cCCCCeEEEEeeC-CEEccC-----------------CC----ceEEEe--cCceEEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHN-NVPIKS-----------------GS----RFTETN--NFGFVALD 244 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~-g~~l~~-----------------~~----~~~~~~--~~~~~~L~ 244 (808)
+....+.+|++++|.|.+.+ .+.|.+.|.|+++ +..+.. .. +..... ..+..+|.
T Consensus 125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 204 (268)
T 3mj6_A 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK 204 (268)
T ss_dssp CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEE
T ss_pred CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEE
Confidence 33567889999999999842 3668899999993 322111 01 111111 11233899
Q ss_pred EccCCCCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 245 I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 205 i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 999999999999999999999988899998854
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=180.25 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=133.5
Q ss_pred cCCCcccccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEec-----------------CCCCCeEEEee--CcEEEEE
Q psy2145 509 PLQNIDAVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKPL-----------------EDSSRITTKHD--FGYVAMD 565 (808)
Q Consensus 509 ~~~~~~~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~l-----------------~~~~~~~~~~~--~~~~~L~ 565 (808)
.+.++ .+.+|++|+|.|.+ .+.+ .+.|.|+|. +..+ ....++.+..+ .+.++|.
T Consensus 7 ~p~~~-~v~~G~~v~L~C~~--~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 7 QSGAE-LVKPGASVRLSCTA--SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp ECCCE-EECTTCCEEEEEEE--CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred cCCCe-eecCCCcEEEEEEe--eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 33344 58899999999998 6644 778999982 2111 11356666654 3466899
Q ss_pred ECCCCCCCCEEEEEEEEeCCeeEE-EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCC
Q psy2145 566 LSHVRAEDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTG 644 (808)
Q Consensus 566 I~~v~~~D~G~Y~C~a~N~~G~~~-~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~ 644 (808)
|.+++.+|+|.|.|.|.|..+... ..+.|.|...+..... ........+|.+...+.
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~---------------------~~~~~~~~~~~v~~~p~- 141 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGG---------------------GGSGGGGSELVMTQTPA- 141 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC------------------------------CCEEEECS-
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccc---------------------cccCCCcccceEECcCC-
Confidence 999999999999999999766542 4466666642110000 00000112345554433
Q ss_pred CccccCCceEEEEEEEeeCCCCCe----EEEEEEC--CEEcc------------CCCcEEEEEeCCEEEEEEccCCCCCc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTM----RFEWFVN--GVELK------------MGSRFHVQHDFGYVTLDITKCVPADS 706 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p----~i~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~ 706 (808)
...+.+|++++|.|.+ .|.|.+ .|.|||+ |..+. ...|+.+...+...+|+|.++..+|+
T Consensus 142 ~~~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 219 (253)
T 3uzq_A 142 SLAVSLGQRATISCRA--SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDV 219 (253)
T ss_dssp EEEECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred eEEEeCCCCEEEEEEe--cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHC
Confidence 3568899999999999 788887 9999995 33221 23677777777788999999999999
Q ss_pred EEEEEEEEeCCcceEE-EEEEEEEeCCCc
Q psy2145 707 GVYMCKAINRAGEAVS-STSLKVKSKSDI 734 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~-s~~l~V~~~p~~ 734 (808)
|.|+|.|.|..+.... -+.|.|...+.+
T Consensus 220 G~Y~C~~~n~~~~~fg~gt~l~v~~~~~~ 248 (253)
T 3uzq_A 220 ATYFCQRSNEVPWTFGGGTKLEIKRPLEH 248 (253)
T ss_dssp EEEEEEECSSSSCCBCCCEEEEECCC---
T ss_pred EEEEEEEccCCCcEECCCEEEEEcCCCCC
Confidence 9999999997654433 456777766544
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=177.16 Aligned_cols=193 Identities=18% Similarity=0.211 Sum_probs=134.5
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc-----------------cCCCceEEE--ecCc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI-----------------KSGSRFTET--NNFG 239 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l-----------------~~~~~~~~~--~~~~ 239 (808)
..+|.+...+..+.+.+|++|+|.|.+.+...+.+.+.|||. +..+ ....|+.+. ...+
T Consensus 4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 83 (256)
T 3juy_B 4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN 83 (256)
T ss_dssp ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence 457788888999999999999999999532246788999983 2111 012466665 3345
Q ss_pred eEEEEEccCCCCCcEEEEEEEEeC------------ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccc
Q psy2145 240 FVALDIMQCLPEDSGVYTCRAVNA------------LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSI 307 (808)
Q Consensus 240 ~~~L~I~~~~~~D~G~Y~C~a~n~------------~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~ 307 (808)
..+|.|.+++.+|+|.|.|.|.|. .+.....+.|.|...+......
T Consensus 84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~---------------------- 141 (256)
T 3juy_B 84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGG---------------------- 141 (256)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------------------------
T ss_pred EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccccc----------------------
Confidence 678999999999999999999986 3334445677776532100000
Q ss_pred cccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCc-cEEEEEEC--CEecc------------CCCcEEEEeeCcE
Q psy2145 308 IEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRN--GVPIQ------------ASNRVSTMHDFGY 372 (808)
Q Consensus 308 ~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~--g~~l~------------~~~~~~~~~~~~~ 372 (808)
.......+|.+...+....+.+|+.++|.|.+ .+.+. +.+.|+|. |..+. ...++.+..++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 219 (256)
T 3juy_B 142 GSGGGGSEIVLTQAPGTLSLSPGERATFSCRS--SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTD 219 (256)
T ss_dssp ----CCCCCCEEEECSEEEECTTSCEEEEEEE--SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE
T ss_pred ccCCCcceeEEEecCCeEEEeCCCCEEEEEEE--CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCE
Confidence 00000114566667778889999999999999 66665 89999983 33222 2356776666777
Q ss_pred EEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 373 VALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 373 ~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.+|.|.++..+|+|.|.|.|.|..+
T Consensus 220 ~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 220 FTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp EEEEESSCCGGGCSEEEEEECCSSC
T ss_pred EEEEECCCCHhHCEEEEEEEeeCCC
Confidence 7899999999999999999998644
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=183.31 Aligned_cols=261 Identities=12% Similarity=0.120 Sum_probs=106.3
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc-cCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI-KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
.+.|++..|.+|+++.|.|.+. ...+..+.|.- ....+ ..+. +...|.|.++..+ |.|+|++...
T Consensus 3 ~v~P~~~~V~~G~sv~l~Cs~~--c~~p~~~~~~t~l~~~~~~~~g~--------~~~~~~l~~v~~~--~~y~C~~~~~ 70 (291)
T 1mq8_A 3 SVSPSKVILPRGGSVLVTCSTS--CDQPKLLGIETPLPKKELLLPGN--------NRKVYELSNVQED--SQPMCYSNCP 70 (291)
T ss_dssp EEECSEEEECTTCEEEEEEEEC--CSSCSEEEEECSSCCCCCCCSCS--------SEEEEEEESCCSC--CCCEEEEECS
T ss_pred EEeCCccEEcCCCeEEEEEeCC--CCCCccceEEecCCCcccccCCC--------ceEEEEEEecccC--CeEEEEEEcC
Confidence 4466778899999999999993 33333488853 11122 1111 2225788888743 4699999754
Q ss_pred ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC
Q psy2145 264 LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343 (808)
Q Consensus 264 ~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g 343 (808)
.-.....+.|.|..+|. .+.+.. ....+.+|+.++|.|.+. .+
T Consensus 71 ~~~~~~~v~l~V~~~P~----------------------------------~v~I~~--~~~~~~~G~~~~LtC~v~-g~ 113 (291)
T 1mq8_A 71 DGQSTAKTFLTVYWTPE----------------------------------RVELAP--LPSWQPVGKNLTLRCQVE-GG 113 (291)
T ss_dssp SCEEEEECEEEECBCCS----------------------------------CCCBCC--CCSBCCSSCCCEEEEEEC-CC
T ss_pred CccEEEEEEEEEecCCC----------------------------------CCEEec--CCccccCCCCEEEEEEec-Cc
Confidence 33445566788765431 222221 223478899999999983 34
Q ss_pred CCcc--EEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcc--------eEEEEEEEEEecccc
Q psy2145 344 DSKL--KVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE--------AVTSSTLFVESKASL 413 (808)
Q Consensus 344 ~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~--------~~~~~~l~V~~~~~~ 413 (808)
.|.. +|+|||+++.+.... ...+....+|.+.....+|.+.|+|+|.|..+. .+....|.|.+.|..
T Consensus 114 ~P~~~l~itW~kg~~~l~~~~---~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~ 190 (291)
T 1mq8_A 114 APRANLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190 (291)
T ss_dssp BSTTTEEEEEESSSSEEEEEE---CCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------
T ss_pred cCCCCcEEEEEECCEEeeccc---CCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC
Confidence 5553 699999998875422 111223346777777777778999999997663 122245555543211
Q ss_pred cccccchHHHhhhhccccccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCC
Q psy2145 414 QLDTQNEAALQKIQNLEDTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRP 493 (808)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (808)
.
T Consensus 191 ~------------------------------------------------------------------------------- 191 (291)
T 1mq8_A 191 P------------------------------------------------------------------------------- 191 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcCCCCccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCc---EEEEEECCEecCCCCCeEEEeeCcEEEEEECCC-
Q psy2145 494 EVDDNATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL---KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHV- 569 (808)
Q Consensus 494 ~~~~~~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~---~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v- 569 (808)
|.+..+ ..+.+|+.++|+|.+ .|.|++ .|+|+++|+.+.... ..+++ .+.+...
T Consensus 192 ----------~~~~~p----~~l~eG~~v~l~C~~--~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~~~~~ 249 (291)
T 1mq8_A 192 ----------PQLVSP----RVLEVDTQGTVVCSL--DGLFPVSEAQVHLALGDQRLNPTV----TYGND--SFSAKASV 249 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------ceecCC----cCccCCCeEEEEEEc--CCCCCCcccEEEEEECCEecCcee----eecCC--eEEEEEec
Confidence 111111 036789999999999 776554 599999999987532 11222 2333322
Q ss_pred --CC--CCCEEEEEEEEeCCeeEEEEEEEEEEecc
Q psy2145 570 --RA--EDEGIYICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 570 --~~--~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
.+ ++++.|+|.|.|......+..+|.|...|
T Consensus 250 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 250 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp -----------------------------------
T ss_pred ceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 34 34778889999876667778888887643
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=177.10 Aligned_cols=169 Identities=20% Similarity=0.341 Sum_probs=117.3
Q ss_pred cccCCCceEEEEEEeeC-----CCCCcEEEEEECCEe------c-----------CCCCCeEEEee--CcEEEEEECCCC
Q psy2145 515 AVEEGKNAHFSCRLIPV-----GDPTLKVEWFRNEKP------L-----------EDSSRITTKHD--FGYVAMDLSHVR 570 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~-----g~P~~~v~W~k~g~~------l-----------~~~~~~~~~~~--~~~~~L~I~~v~ 570 (808)
.+.+|+.|.|.|.+... +.+.+.+.|+|++.. + ....|+.+..+ .+.++|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 90 (214)
T 2zg1_A 11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR 90 (214)
T ss_dssp EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence 68899999999998411 126788999998752 1 11245555432 234579999999
Q ss_pred CCCCEEEEEEEEeCCeeEE----EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 571 AEDEGIYICKATNALGEAV----TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~----~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
.+|+|.|.|.+.|..+... ..+.|.|...+. +|.+... .
T Consensus 91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---------------------------------~p~i~~~----~ 133 (214)
T 2zg1_A 91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE---------------------------------KPDIHFL----E 133 (214)
T ss_dssp GGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC---------------------------------CCEEC------C
T ss_pred HhhCceEEEEEEcCCCceeeecCCceEEEEecCCC---------------------------------CCceecC----c
Confidence 9999999999999874332 356777765321 2444321 2
Q ss_pred cccCCceEEEEEEEeeCC----CCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce--
Q psy2145 647 EIMEGQSAHYDCRVVPVG----DPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-- 720 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-- 720 (808)
.+.+|+.++|.|.+ .| .|.|.|.|+++|..+... +. ...+.|.|..+..+|+|.|+|.|.|..|..
T Consensus 134 ~~~~G~~v~L~C~~--~~~~~~~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~ 205 (214)
T 2zg1_A 134 PLESGRPTRLSCSL--PGSCEAGPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTT 205 (214)
T ss_dssp CCCTTCCEEEEEEC--TTCCSCSSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTTCCSCEEEEEEECC----CC
T ss_pred cccCCCeEEEEEEe--ccCCCCCCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccHHcCcEEEEEEEeCCCCcce
Confidence 36789999999998 56 489999999999765422 21 233489999999999999999999987654
Q ss_pred EEEEEEEE
Q psy2145 721 VSSTSLKV 728 (808)
Q Consensus 721 ~~s~~l~V 728 (808)
+.++.|.|
T Consensus 206 ~~~v~l~V 213 (214)
T 2zg1_A 206 ERTVQLNV 213 (214)
T ss_dssp EEEEECCC
T ss_pred EEEEEEEe
Confidence 44444443
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=170.32 Aligned_cols=161 Identities=9% Similarity=0.139 Sum_probs=119.4
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe----------eccCcEEEEeeCCeEEEEEcccCcCCCee
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV----------TIGHRFRPIHDFGYVALDIIDTIPEDSGT 122 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l----------~~~~r~~~~~~~~~~~L~I~~~~~~D~G~ 122 (808)
.+..+ .+.+|++|+|.|...+.+.+.+.|.|+| ++..| ..+.|+.+..++ +|.|.+++.+|+|.
T Consensus 5 ~~~~v-~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~ 80 (182)
T 1hnf_A 5 NALET-WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDI 80 (182)
T ss_dssp CCEEE-EEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEE
T ss_pred cccEE-EEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEE
Confidence 34445 7889999999995432235677999999 99887 346677766443 69999999999999
Q ss_pred EEEEEEecCcceEE--EEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCe
Q psy2145 123 YTCRAVNLVGFAEV--QATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQR 200 (808)
Q Consensus 123 Y~C~a~n~~g~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~ 200 (808)
|+|.|.|..|.... .+.|.|... ..+|.+... +..
T Consensus 81 Y~c~~~n~~g~~~~~~~~~L~V~~~-----------------------------------~~~P~i~~~--------~~~ 117 (182)
T 1hnf_A 81 YKVSIYDTKGKNVLEKIFDLKIQER-----------------------------------VSKPKISWT--------CIN 117 (182)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEECC-----------------------------------CCCCEEEEE--------TTT
T ss_pred EEEEEEeCCCceeEEEEEEEEEcCc-----------------------------------CCCCEEEEc--------cCc
Confidence 99999999887643 456666532 234555442 336
Q ss_pred EEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 201 AHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 201 v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
++|.|.+ .+.|.+.|.|++||..+ .+ ... .|.+.. ..+|+|.|+|.|.|..|...+...+.+
T Consensus 118 v~L~C~~--~~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 118 TTLTCEV--MNGTDPELNLYQDGKHL-KL-------SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp TEEEEEC--SSCSSCEEEEEESSCEE-EE-------ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEeEc--cCCCCCEEEEEECCEEC-CC-------CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 8999999 57778999999999988 21 111 233333 478999999999999999888877754
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-20 Score=181.96 Aligned_cols=183 Identities=18% Similarity=0.314 Sum_probs=125.9
Q ss_pred CccccCCCCcEEEEEEEeeCCC---CCceEEEEeCCEEe-------------eccCcEEEEee---CCeEEEEEcccCcC
Q psy2145 58 SIENLRERGHAHFECKLEPVTD---SNLKVEWFKNGRPV-------------TIGHRFRPIHD---FGYVALDIIDTIPE 118 (808)
Q Consensus 58 ~~~~v~~G~~v~l~C~~~~~~~---p~~~v~W~~~g~~l-------------~~~~r~~~~~~---~~~~~L~I~~~~~~ 118 (808)
.+ .+.+|++++|.|.+.+.+. ..+.|.|+|++... ....|+.+..+ .+..+|.|.+++.+
T Consensus 4 ~v-~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 4 PV-VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CC-CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CE-EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 44 7899999999999984211 23789999987432 11234443321 13457999999999
Q ss_pred CCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCC
Q psy2145 119 DSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEG 198 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G 198 (808)
|+|.|+|.+.|. +.....+.|.|... ..+|.+...+ ...+.+|
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~-----------------------------------~~~p~i~~~~-~~~v~~G 125 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAP-----------------------------------YSKPSMTLEP-NKDLRPG 125 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBC-----------------------------------CCCCEEECCC------CC
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcC-----------------------------------CCCCcEEeCC-CceecCC
Confidence 999999999985 33444444444321 2345665544 3467889
Q ss_pred CeEEEEEEEeecCCCCeEEEEee-CCEEccCCCceEEE--ecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 199 QRAHFECRLIPVSDNTMKVEWFH-NNVPIKSGSRFTET--NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 199 ~~v~L~C~~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
+.++|.|.+. .+.|.+.+.|++ ++..+......... .++.+..|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 126 ~~~~l~C~~~-~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 204 (222)
T 4i0k_A 126 NMVTITCSSY-QGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTI 204 (222)
T ss_dssp SEEEEEEEEE-EEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred ceEEEEEecc-cccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEE
Confidence 9999999995 377889999999 56666543332222 2233446899999999999999999999999999999999
Q ss_pred eeCC
Q psy2145 276 HSKK 279 (808)
Q Consensus 276 ~~~~ 279 (808)
..+|
T Consensus 205 ~~~p 208 (222)
T 4i0k_A 205 TGQP 208 (222)
T ss_dssp CC--
T ss_pred eCCc
Confidence 7654
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=177.17 Aligned_cols=180 Identities=11% Similarity=0.122 Sum_probs=124.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee----------------ccCcEEEEee--CCeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT----------------IGHRFRPIHD--FGYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~----------------~~~r~~~~~~--~~~~~L~I 112 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.|.|||+ |..+. ...|+.+..+ .+.++|.|
T Consensus 4 v~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 82 (210)
T 3d9a_H 4 LQESGPS-LVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDL 82 (210)
T ss_dssp EEEESCS-EECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred EecCCCE-EecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEE
Confidence 3457777 89999999999999852113479999985 32211 2457777654 35679999
Q ss_pred cccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCc
Q psy2145 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN 192 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 192 (808)
.+++.+|+|.|+|.|.|.. .....+.|.|.... ..+|.+...+..
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~----------------------------------~~~P~v~~~~~~ 127 (210)
T 3d9a_H 83 NSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAK----------------------------------TTPPSVYPLAPG 127 (210)
T ss_dssp CSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCC----------------------------------CBCCEEEEECCT
T ss_pred CCCCcccCEEEEEEEecCc-ccccceEEEeccCC----------------------------------CCCCEEEEecCC
Confidence 9999999999999998853 22233566664211 346666655545
Q ss_pred eeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
..+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........+. ...|.|.++..+| |.|+|.|.|..|...
T Consensus 128 ~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 128 SAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp TSCCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred cccccCCcEEEEEEEee-EecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 56789999999999953 33766 999999998653111111111111 2369999998877 999999999988765
Q ss_pred EE
Q psy2145 269 TS 270 (808)
Q Consensus 269 ~~ 270 (808)
..
T Consensus 206 ~~ 207 (210)
T 3d9a_H 206 VD 207 (210)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=177.27 Aligned_cols=184 Identities=11% Similarity=0.131 Sum_probs=127.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee----------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT----------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~----------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.+.|||++ .. +. ...|+.+..+ .+..+
T Consensus 4 ~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 82 (222)
T 1q9r_B 4 LVESGGG-LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILY 82 (222)
T ss_dssp EEEECCC-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEE
T ss_pred EecCCce-eEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEE
Confidence 3456667 899999999999998421126789999842 21 10 1357777654 35679
Q ss_pred EEEcccCcCCCeeEEEEEEecCc-----ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCC
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVG-----FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 184 (808)
|.|.+++.+|+|.|.|.+.|..| .....+.|.|.... ..+|
T Consensus 83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P 128 (222)
T 1q9r_B 83 LQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK----------------------------------TTPP 128 (222)
T ss_dssp EEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC----------------------------------CBCC
T ss_pred EEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC----------------------------------CCCC
Confidence 99999999999999999998754 22234567665311 3456
Q ss_pred eEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEE
Q psy2145 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 185 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a 260 (808)
.+...+....+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+..........++. ...|.|.++..+| |.|+|.|
T Consensus 129 ~i~~~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a 206 (222)
T 1q9r_B 129 SVYPLAPGSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNV 206 (222)
T ss_dssp EEEEECCCSCCCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEE
T ss_pred eEEEccccccccCCCcEEEEEEEcc-EECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEE
Confidence 6665554445678999999999953 24776 999999998764321111111211 1268999999999 9999999
Q ss_pred EeCceeEEEEEEE
Q psy2145 261 VNALGQAVTSGNL 273 (808)
Q Consensus 261 ~n~~g~~~~~~~l 273 (808)
.|..|.......|
T Consensus 207 ~n~~~~~~~~~~i 219 (222)
T 1q9r_B 207 AHPASSTKVDKKI 219 (222)
T ss_dssp EEGGGTEEEEEEC
T ss_pred EccCCCCcEEEec
Confidence 9998876555444
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-19 Score=178.22 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=124.2
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC-----EEee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG-----RPVT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-----~~l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
+...|..+ .+.+|++|+|.|.+. +.|.+.+.|||++ ..+. ...|+......+.++|.|.+++.
T Consensus 7 v~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (250)
T 3esu_F 7 LIQSTSSL-SASLGDRVTISCRAS--QDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ 83 (250)
T ss_dssp EECSCSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEecCCEE-EeeCCCcEEEEEEec--ccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence 34456677 899999999999998 4677799999943 1111 24577777777788999999999
Q ss_pred CCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeec
Q psy2145 118 EDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIK 196 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~ 196 (808)
+|+|.|.|.|.|..+.. .....|.|...+....... ..........++.+...+....+.
T Consensus 84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~v~ 144 (250)
T 3esu_F 84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGG-------------------SGGGGSGGGGSEVQLQQSGPELVK 144 (250)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC-------------------------------------------CEECCCEEEC
T ss_pred hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccc-------------------cccccccCcccceEEecCCceEEc
Confidence 99999999999876543 2334566653210000000 000000001234455566678899
Q ss_pred CCCeEEEEEEEeecCCC--CeEEEEeeC--CEEcc-----------------CCCceEEEec--CceEEEEEccCCCCCc
Q psy2145 197 EGQRAHFECRLIPVSDN--TMKVEWFHN--NVPIK-----------------SGSRFTETNN--FGFVALDIMQCLPEDS 253 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~I~~~~~~D~ 253 (808)
+|++++|.|.+. +.+ .+.+.|||+ |..+. ...++.+..+ .+..+|.|.+++.+|+
T Consensus 145 ~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds 222 (250)
T 3esu_F 145 PGASVKISCKDS--GYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDS 222 (250)
T ss_dssp TTCCEEEEEECC--STTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred CCceEEEEEEec--CCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccC
Confidence 999999999994 545 789999997 44331 1245555432 4556899999999999
Q ss_pred EEEEEEEEe
Q psy2145 254 GVYTCRAVN 262 (808)
Q Consensus 254 G~Y~C~a~n 262 (808)
|.|+|.|.|
T Consensus 223 G~Y~C~~~~ 231 (250)
T 3esu_F 223 AVYFCARSG 231 (250)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 999999997
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=179.29 Aligned_cols=194 Identities=17% Similarity=0.278 Sum_probs=131.4
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEe---c--------------CCCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKP---L--------------EDSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~---l--------------~~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|+|. +.. + ....|+.+..+ .+..+|.|.+++.
T Consensus 13 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 13 LVKPGASVKISCKT--SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred EEcCCCCEEEEEEE--ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 48899999999999 5655 688999973 211 1 11356666643 3466899999999
Q ss_pred CCCEEEEEEEEeC----CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 572 EDEGIYICKATNA----LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 572 ~D~G~Y~C~a~N~----~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
+|+|.|.|.|.|. .+.....+.|.|...+.-. ...... .....+|.+...+. ...
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~----~~~~~~----------------~~~~~~~~~~~~p~-~~~ 149 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGS----GGGGSG----------------GGGSTDIQLTQSPS-SLS 149 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC-----------------------------------CCCCEEEECS-EEE
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccc----cCcccC----------------CCCccccEEEcCCC-eEE
Confidence 9999999999998 4444445677776421100 000000 00001345555443 356
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc------------CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVN--GVELK------------MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
+.+|++++|.|.+ .|.|.+.|.|||+ |..+. ...|+.+...+...+|+|.++..+|+|.|+|.|
T Consensus 150 v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 227 (256)
T 3umt_A 150 ASLGERVSITCRA--SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ 227 (256)
T ss_dssp ECTTCCEEEEEEE--SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred EECCCCEEEEEEE--ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE
Confidence 8899999999999 7899899999994 32221 246788877788889999999999999999999
Q ss_pred EeCCcceEE-EEEEEEEeCCC
Q psy2145 714 INRAGEAVS-STSLKVKSKSD 733 (808)
Q Consensus 714 ~N~~G~~~~-s~~l~V~~~p~ 733 (808)
.|..+.... .+.|.|..++.
T Consensus 228 ~~~~~~~fg~gt~L~V~~~~~ 248 (256)
T 3umt_A 228 YASSPPTFGGGTKLEIKRAAA 248 (256)
T ss_dssp CSSSSCEECCCEEEEEC----
T ss_pred eeCCCcEECCCEEEEEECCCc
Confidence 997654433 46788876643
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=180.66 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=130.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---e---------eccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---V---------TIGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l---------~~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++++|.|.+.+ .|.+.|.|||++ .. + ..+.|+......+..+|.|.+++.+
T Consensus 28 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 104 (237)
T 3sob_L 28 TQSPSSL-SASVGDRVTITCRASQ--DVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE 104 (237)
T ss_dssp EEECSEE-EEETTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeCCCeE-EEeCCCcEEEEEecCC--CCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence 3446667 8999999999999984 578899999932 11 1 1246787777778889999999999
Q ss_pred CCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 119 DSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|+|.|+|.|.|..+.. ...+.|.|... ..+|.+...+....+.+
T Consensus 105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~p~v~~~~~~~~~~~ 149 (237)
T 3sob_L 105 DFATYYCQQSYTTPPTFGQGTKVEIKRT-----------------------------------VAAPSVFIFPPSDEQLK 149 (237)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC-----------------------------------CBCCEEEEECCCHHHHH
T ss_pred hCeEEEEeeccCCceEEcCcEEEEEecC-----------------------------------CCCCceEEeCCChhhcc
Confidence 9999999998876532 23345666431 45788877776666667
Q ss_pred CCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCC--ceE-EEecCc----eEEEEEccCCCCCcEEEEEEEEeCceeEEE
Q psy2145 198 GQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGS--RFT-ETNNFG----FVALDIMQCLPEDSGVYTCRAVNALGQAVT 269 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~--~~~-~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 269 (808)
|+.++|.|.+.+ ..| .+.|.|+|||..+..+. ... ....++ ...|.|..+..+|+|.|+|+|.|.......
T Consensus 150 g~~v~l~C~~~~-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 228 (237)
T 3sob_L 150 SGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV 228 (237)
T ss_dssp HTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred CCceEEEEEEcc-cCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence 999999999964 245 68999999999987532 111 111122 236889999999999999999997654433
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-19 Score=181.53 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=129.8
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC-----------------CCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE-----------------DSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+. ...|+.+..+ .+..+|.|.+++.
T Consensus 37 ~v~~G~~v~L~C~~--~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 114 (282)
T 1qok_A 37 LVRSGTSVKLSCTA--SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS 114 (282)
T ss_dssp EEETTCCEEEEEEE--ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEeCCCeEEEEEec--cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence 68899999999998 5665 6889999964 2110 1356766653 3457899999999
Q ss_pred CCCEEEEEEEEeCCe---eE--EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 572 EDEGIYICKATNALG---EA--VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G---~~--~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
+|+|.|.|.|.|..| .. ...+.|.|...+...- ..+ ......+|.+...+. ..
T Consensus 115 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~--~~~-------------------~~~~~~~~~~~~~p~-~~ 172 (282)
T 1qok_A 115 EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSG--GGG-------------------SGGGGSENVLTQSPA-IM 172 (282)
T ss_dssp GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC------------------------------------CCCEEEECS-EE
T ss_pred hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccC--Ccc-------------------CCCCccceEEecCCC-EE
Confidence 999999999999976 11 1235677765431000 000 000001234444332 35
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEE--CCEEcc------------CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFV--NGVELK------------MGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+.+|++++|.|.+ .|.| +.|.||| +|..+. ...+|.+..+....+|+|.++..+|+|.|+|.
T Consensus 173 ~v~~G~~v~L~C~~--~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 249 (282)
T 1qok_A 173 SASPGEKVTITCSA--SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQ 249 (282)
T ss_dssp EECTTCCEEEEEEE--SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEcCCCcEEEEEEe--cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEE
Confidence 68899999999999 7888 8999999 676542 24688877677788999999999999999999
Q ss_pred EEeCCcce-EEEEEEEEEe
Q psy2145 713 AINRAGEA-VSSTSLKVKS 730 (808)
Q Consensus 713 A~N~~G~~-~~s~~l~V~~ 730 (808)
|.|..+.. ...+.|.|.+
T Consensus 250 a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 250 QRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp ECSSSSCEECCCEEEEEC-
T ss_pred EeeCCCceEeCCEEEEEec
Confidence 99864432 2345677753
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=184.70 Aligned_cols=171 Identities=16% Similarity=0.271 Sum_probs=114.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEEC--CEec------------CCC---C-CeEEEe-eCcEEEEEECCCCCCCCE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPL------------EDS---S-RITTKH-DFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~--g~~l------------~~~---~-~~~~~~-~~~~~~L~I~~v~~~D~G 575 (808)
.+.+|++|+|.|.+ .+ +.+.|.|+|. |..+ ... . |+.+.. ..+.++|.|.+++.+|+|
T Consensus 38 ~v~~G~~v~L~C~~--~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 114 (270)
T 3qib_D 38 VKGQGQKAKMRCIP--EK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSA 114 (270)
T ss_dssp EEETTSCEEEEEEC--CT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCE
T ss_pred EEcCCCCEEEEEEe--cC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCe
Confidence 57899999999987 44 7789999982 2111 000 0 444443 234568999999999999
Q ss_pred EEEEEEEeCC----eeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 576 IYICKATNAL----GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 576 ~Y~C~a~N~~----G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
.|.|.+.|.. +.......|.|..... ...+|.+.........+.+|
T Consensus 115 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~P~v~~~~~~~~~~~~g 164 (270)
T 3qib_D 115 LYLCASSLNWSQDTQYFGPGTRLLVLEDLK------------------------------NVFPPEVAVFEPSEAEISHT 164 (270)
T ss_dssp EEEEEEESCTTCCCCEECCCEEEEEESCST------------------------------TCBCCEEEEEECCHHHHHHH
T ss_pred EEEEEEecCCCccceEECCcEEEEEccccc------------------------------cccCCceEEECCCccccccC
Confidence 9999999742 2233335666664211 11246555444444456779
Q ss_pred ceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEE-------E-EeCC---EEEEEEccCCCCC-cEEEEEEEEeCC
Q psy2145 652 QSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHV-------Q-HDFG---YVTLDITKCVPAD-SGVYMCKAINRA 717 (808)
Q Consensus 652 ~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~-------~-~~~~---~~~L~I~~v~~~D-~G~Y~C~A~N~~ 717 (808)
+.++|.|.+ .| .|.+ .|.|+|||.+|..+.+... . .++. .+.|.|.....+| .|.|+|.|.|..
T Consensus 165 ~~v~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~ 242 (270)
T 3qib_D 165 QKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 242 (270)
T ss_dssp SEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECC
T ss_pred CceEEEEEe--cceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecC
Confidence 999999999 56 6766 8999999999975322110 0 0111 1468888887777 999999999986
Q ss_pred cce
Q psy2145 718 GEA 720 (808)
Q Consensus 718 G~~ 720 (808)
...
T Consensus 243 l~~ 245 (270)
T 3qib_D 243 LSE 245 (270)
T ss_dssp BCT
T ss_pred CCC
Confidence 543
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-20 Score=184.46 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=121.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEEC--CEecC------------CCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPLE------------DSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+.+|+.++|.|.+ .+.|.+.|.|+|+ |..+. ...++.+....+...|.|.+++.+|+|.|+|.
T Consensus 10 ~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 87 (212)
T 1nfd_E 10 SVTVGETVKITCSG--DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL 87 (212)
T ss_dssp EEETTSCCCEEEEE--TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred EEeCCCcEEEEEec--CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence 68899999999998 7888888999985 33321 14677777677777999999999999999999
Q ss_pred EEeC-CeeE--EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 581 ATNA-LGEA--VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 581 a~N~-~G~~--~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
|.|. .+.. .....|.|...+. .+|.+...... ..+.+|+.++|.
T Consensus 88 ~~n~~~~~~~~~~~~~l~V~~~~~--------------------------------~~p~v~~~~~~-~~~~~g~~v~L~ 134 (212)
T 1nfd_E 88 SSYGDNNDLVFGSGTQLTVLRGPK--------------------------------SSPKVTVFPPS-PEELRTNKATLV 134 (212)
T ss_dssp EEETTTTEEEECCCEEEEEECCCC--------------------------------BCCEEECCCCC-HHHHHTTEECCC
T ss_pred EEcccCcccccCCceEEEEccCCC--------------------------------CCCEEEeeCCc-hHhccCCceEEE
Confidence 9973 2221 2234566643221 23555443322 345689999999
Q ss_pred EEEeeCCC-CC-eEEEEEECCEEccCCCcEE-EEE-eCC---EEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 658 CRVVPVGD-PT-MRFEWFVNGVELKMGSRFH-VQH-DFG---YVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 658 C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~~-~~~-~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
|.+ .|. |. +.|.|+|||.++..+.... ... .++ .+.|.|.++..+|+|.|+|.|.|..+...
T Consensus 135 C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (212)
T 1nfd_E 135 CLV--NDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203 (212)
T ss_dssp EEE--EEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred EEE--EeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence 999 565 55 8999999999987553211 000 011 24699999999999999999999988643
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-19 Score=177.07 Aligned_cols=186 Identities=19% Similarity=0.288 Sum_probs=125.8
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECCCCC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
+...+.++ .+.+|++|+|.|.+ .+.|.+.|.|+|++ ..+ ....|+.+...++..+|.|.+++.
T Consensus 4 v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 4 LTQSPATL-SVTPGNSVSLSCRA--SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (242)
T ss_dssp EEEECSEE-EECTTCCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred EEEcCCeE-EEcCCCcEEEEEEe--CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh
Confidence 33444443 58899999999999 78889999999953 211 124577776666777999999999
Q ss_pred CCCEEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 572 EDEGIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
+|+|.|.|.|.|..+.. ...+.|.|...+....... -...+|.+...... ..+.+
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~-~~v~~ 136 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGS-----------------------GGGGSDIQLQESGP-SLVKP 136 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC--------------------------------------CCEEEEECC-SEECT
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccc-----------------------cccccceeeecCCc-ceecC
Confidence 99999999999986532 2335677765432100000 00011223333332 45899
Q ss_pred CceEEEEEEEeeCCCC--CeEEEEEEC--CEEcc----------------CCCcEEEEEe--CCEEEEEEccCCCCCcEE
Q psy2145 651 GQSAHYDCRVVPVGDP--TMRFEWFVN--GVELK----------------MGSRFHVQHD--FGYVTLDITKCVPADSGV 708 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P--~p~i~W~~~--g~~l~----------------~~~~~~~~~~--~~~~~L~I~~v~~~D~G~ 708 (808)
|++++|.|.+ .|.| .+.|.|||+ |..+. ...|+.+..+ ....+|.|.++..+|+|.
T Consensus 137 G~~v~L~C~~--~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~ 214 (242)
T 2znx_A 137 SQTLSLTCSV--TGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTAT 214 (242)
T ss_dssp TSCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred CCeEEEEEEE--EccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEE
Confidence 9999999999 6776 589999994 33221 2467777654 356799999999999999
Q ss_pred EEEEEEeC--Ccce
Q psy2145 709 YMCKAINR--AGEA 720 (808)
Q Consensus 709 Y~C~A~N~--~G~~ 720 (808)
|+|.|.|. +|..
T Consensus 215 Y~C~a~~~~~fG~g 228 (242)
T 2znx_A 215 YYCANXDGDYXGQG 228 (242)
T ss_dssp EEEEETTSSCBCCC
T ss_pred EEEeccCCcccCCC
Confidence 99999994 4544
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-20 Score=183.01 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=123.8
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCc-eEEEEeCC--EEe---e---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNL-KVEWFKNG--RPV---T---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~-~v~W~~~g--~~l---~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
.|..+ .+.+|++++|.|.+.+. .+.+ .|.|||++ ..+ . ...|+....+.+..+|.|.+++.+|
T Consensus 25 ~p~~~-~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 102 (234)
T 2j6e_L 25 QPPSA-SGTPGQRVTISCSGSSS-NIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSED 102 (234)
T ss_dssp CCSCC-CBCTTCEEEEEEECCTT-TTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTT
T ss_pred CCCcE-EeeCCCcEEEEEEecCC-CCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHH
Confidence 37777 89999999999999842 2333 79999963 222 1 1357777666777899999999999
Q ss_pred CeeEEEEEEecCcc---eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeec
Q psy2145 120 SGTYTCRAVNLVGF---AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIK 196 (808)
Q Consensus 120 ~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~ 196 (808)
+|.|+|.|.|..+. ....+.|.|... ...+|.+...+....+.
T Consensus 103 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~----------------------------------~~~~p~v~~~~~~~~~~ 148 (234)
T 2j6e_L 103 EADYYCATWDDSLSAVIFGGGTKLTVLGQ----------------------------------PKAAPSVTLFPPSSEEL 148 (234)
T ss_dssp CSEEEEEEEETTTTEEEECCCBCCCBCCC----------------------------------CCCCCCCCEECCCHHHH
T ss_pred CEEEEEEEEcCCcceeEecCCEEEEEecC----------------------------------CCCCCcccccCCChhHh
Confidence 99999999998772 112233433211 02466666555444455
Q ss_pred CCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE--EEecCc----eEEEEEccCCCCCcEEEEEEEEeCceeEEE
Q psy2145 197 EGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT--ETNNFG----FVALDIMQCLPEDSGVYTCRAVNALGQAVT 269 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~--~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 269 (808)
+|+.++|.|.+.+ ..|. +.|.|+|||..+..+.... ....++ ...|.|.++..+|+|.|+|.|.|..+....
T Consensus 149 ~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 227 (234)
T 2j6e_L 149 QANKATLVCLISD-FFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 227 (234)
T ss_dssp TTSCCCEEECCCB-CSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred cCCceEEEEEEEE-EcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence 7999999999953 2343 5999999999986542110 011111 247999999999999999999998776443
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=154.48 Aligned_cols=96 Identities=29% Similarity=0.518 Sum_probs=88.1
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
.+|.|...+.+ ..+.+|+.+.|.|.+ .|+|.|.|.|+|||+.|..+.++.+..+++.++|.|.++..+|+|.|+|.|
T Consensus 12 ~pP~f~~~p~~-~~v~~G~~~~l~C~~--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 88 (107)
T 3knb_B 12 SPPCFLRFPRP-VRVVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRA 88 (107)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE--EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCc-EEEeCCCcEEEEEEE--EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEE
Confidence 35888887764 689999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred EeCCcceEEEEEEEEEeCC
Q psy2145 714 INRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~~~p 732 (808)
+|.+|.+++++.|.|..+|
T Consensus 89 ~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 89 RNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EETTEEEEEEEEEEEEC--
T ss_pred EECCCEEEEEEEEEEEcCC
Confidence 9999999999999999875
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-19 Score=178.27 Aligned_cols=179 Identities=21% Similarity=0.316 Sum_probs=126.4
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCC-----CcEEEEEECC--Eec------------CCCCCeEEEeeCcEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-----TLKVEWFRNE--KPL------------EDSSRITTKHDFGYVA 563 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-----~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~ 563 (808)
.+.+...+..+ .+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+ ....|+.....++..+
T Consensus 34 ~~~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 110 (252)
T 3bkj_L 34 DVLMTQTPLSL-PVNLGEQASISCRS--SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFT 110 (252)
T ss_dssp CCCEEEECSEE-EECTTSCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred ccEEEeCCceE-EEeCCCcEEEEEEc--CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEE
Confidence 34455545554 68999999999999 7887 6899999964 111 1135777776777789
Q ss_pred EEECCCCCCCCEEEEEEEEeCCeeEE-EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 564 MDLSHVRAEDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 564 L~I~~v~~~D~G~Y~C~a~N~~G~~~-~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
|.|.+++.+|+|.|.|.|.|..+... ....|.|.... .+|.+....
T Consensus 111 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------~~P~v~~~~ 157 (252)
T 3bkj_L 111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD---------------------------------AAPTVSIFP 157 (252)
T ss_dssp EEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC---------------------------------BCCEEEEEC
T ss_pred EEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC---------------------------------cCcEEEEeC
Confidence 99999999999999999999866322 22456664311 136665543
Q ss_pred CCCccccCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEE--EE-EeCC----EEEEEEccCCCCCcEEEEEEE
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFH--VQ-HDFG----YVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~--~~-~~~~----~~~L~I~~v~~~D~G~Y~C~A 713 (808)
.. ..+.+|+.++|.|.+ .| .|.+ .|.|+|||+.+..+.... .. ..++ .+.|.|..+..+|+|.|+|.|
T Consensus 158 ~~-~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a 234 (252)
T 3bkj_L 158 PS-SEQLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEA 234 (252)
T ss_dssp CC-HHHHHHTEEEEEEEE--EEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEE
T ss_pred CC-hhhcCCCcEEEEEEE--eeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEE
Confidence 33 234579999999999 56 4554 899999999887541110 10 0111 247999999999999999999
Q ss_pred EeCCcce
Q psy2145 714 INRAGEA 720 (808)
Q Consensus 714 ~N~~G~~ 720 (808)
.|.....
T Consensus 235 ~n~~~~~ 241 (252)
T 3bkj_L 235 THKTSTS 241 (252)
T ss_dssp ECTTCSS
T ss_pred EeCCCCC
Confidence 9987664
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=177.42 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=131.2
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Ee----------eccCcEEEE--eeCCeEEEEEcc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PV----------TIGHRFRPI--HDFGYVALDIID 114 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l----------~~~~r~~~~--~~~~~~~L~I~~ 114 (808)
+...|..+ .+.+|++|+|.|.+.+ .|.+.|.|||.. . .+ ....|+.+. ...+..+|.|.+
T Consensus 6 v~q~p~~~-~v~~G~~v~L~C~~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 82 (256)
T 3tf7_C 6 VTQPDARV-TVSEGASLQLRCKYSY--SATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS 82 (256)
T ss_dssp EECSCSEE-EEETTSCEEECCEEEC--SSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred EEecCceE-EecCCCeEEEEEEeCC--CCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence 34556677 8999999999999984 688899999832 1 11 124466653 335667899999
Q ss_pred cCcCCCeeEEEEEEecCcce----EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeec
Q psy2145 115 TIPEDSGTYTCRAVNLVGFA----EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL 190 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 190 (808)
++.+|+|.|+|.|.|..+.. ...+.|.|.......... . ...........+|.+...+
T Consensus 83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~v~~~p 144 (256)
T 3tf7_C 83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGG-----------------G-SGGGGSGGGGSEAAVTQSP 144 (256)
T ss_dssp CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------------------------CCEEESC
T ss_pred CCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCC-----------------C-cCcccCCCCcCccEEEecC
Confidence 99999999999999876522 224567665310000000 0 0000000113577888888
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--EEc---c------------CCCceEEEe-cCceEEEEEccCCCCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPI---K------------SGSRFTETN-NFGFVALDIMQCLPED 252 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~~l---~------------~~~~~~~~~-~~~~~~L~I~~~~~~D 252 (808)
....+.+|++|+|.|.+. +. .+.+.|||++ ..+ . ...++.... .....+|.|.+++.+|
T Consensus 145 ~~~~v~~G~~v~L~C~~~--~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D 221 (256)
T 3tf7_C 145 RNKVTVTGENVTLSCRQT--NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQ 221 (256)
T ss_dssp SEEEEETTCCEEECEEEC--SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGG
T ss_pred CEEEEeCCCcEEEEEEcC--CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHH
Confidence 888899999999999994 44 6689999832 111 0 123333332 2344589999999999
Q ss_pred cEEEEEEEEeCceeEEE--EEEEEEee
Q psy2145 253 SGVYTCRAVNALGQAVT--SGNLLVHS 277 (808)
Q Consensus 253 ~G~Y~C~a~n~~g~~~~--~~~l~V~~ 277 (808)
+|.|+|.|.|..|.... -..|.|..
T Consensus 222 sG~Y~C~a~n~~g~~~fG~gt~l~v~~ 248 (256)
T 3tf7_C 222 TSLYFCASSDAPGQLYFGEGSKLTVLE 248 (256)
T ss_dssp CEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CEEEEEEecCCCCccEECCCeEEEEEc
Confidence 99999999998775432 35677764
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=178.68 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=117.3
Q ss_pred cccCCCceEEEEEEeeCCCCCc---EEEEEECCEecCC----------------CCCeEEE-------eeCcEEEEEECC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTL---KVEWFRNEKPLED----------------SSRITTK-------HDFGYVAMDLSH 568 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~---~v~W~k~g~~l~~----------------~~~~~~~-------~~~~~~~L~I~~ 568 (808)
.+..|++|+|.|.+ .+.|.+ .|+|+|++..+.. ..+.... ...+..+|.|.+
T Consensus 12 ~~~~G~~v~L~C~~--~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 12 RGRLGGTVELPCHL--LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEETTSCEEECCEE--CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEecCCCEEEEEEE--ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 47789999999999 676665 4899998754310 1111111 112234799999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEE-EEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTA-SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~-~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
++.+|+|.|+|.|.|..|...... .+.+... |.+..... ...
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~-~~~ 132 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ------------------------------------PENHAEAQ-EVT 132 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC------------------------------------CEEEEEEC-CBC
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeecC------------------------------------Cceeeccc-cee
Confidence 999999999999999877655543 3334332 32222222 234
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
...++.+.+.|.+. .+.|++.+.|+++|..+..........++. .+.|.|.++..+|+|.|+|.|+|.+|....++
T Consensus 133 ~~~~~~~~~~c~~~-~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~ 211 (225)
T 4fmk_A 133 IGPQSVAVARCVST-GGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILL 211 (225)
T ss_dssp CSSSCEEEEEEEEE-EEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred ecceeeeeeeeeec-CCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEE
Confidence 56677787777764 688999999999987654332222211221 24799999999999999999999999876555
Q ss_pred EEEE
Q psy2145 725 SLKV 728 (808)
Q Consensus 725 ~l~V 728 (808)
.+++
T Consensus 212 ~v~l 215 (225)
T 4fmk_A 212 PVTL 215 (225)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5443
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=175.75 Aligned_cols=181 Identities=18% Similarity=0.245 Sum_probs=122.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC-----CceEEEEeC--CEE---ee---------ccCcEEEEeeCCeEEEEEc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS-----NLKVEWFKN--GRP---VT---------IGHRFRPIHDFGYVALDII 113 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p-----~~~v~W~~~--g~~---l~---------~~~r~~~~~~~~~~~L~I~ 113 (808)
...|..+ .+.+|++++|.|.+.+ .| .+.|.|||+ |.. +. ...|+.+..+.+..+|.|.
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 5 TQTPLYL-PVSLGDQASISCRSSQ--TIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp EEECSEE-EECTTCCEEEEEEESS--CCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred EecCCeE-EecCCCCEEEEEeCCC--cccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 4457777 8999999999999984 55 689999994 221 11 1467877767777899999
Q ss_pred ccCcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCc
Q psy2145 114 DTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN 192 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 192 (808)
+++.+|+|.|+|.|.|..+.. ...+.|.|...+..... ......++.+...+..
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~ 136 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGG-------------------------GSGGGGSEVQLQQSGP 136 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC----------------------------------------CCEEEECCC
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCcccccc-------------------------ccccccCceEEeCCCc
Confidence 999999999999999875532 23456776532110000 0000113333444445
Q ss_pred eeecCCCeEEEEEEEeecCC--CCeEEEEeeCC--EEcc-----------------CCCceEEEe--cCceEEEEEccCC
Q psy2145 193 CEIKEGQRAHFECRLIPVSD--NTMKVEWFHNN--VPIK-----------------SGSRFTETN--NFGFVALDIMQCL 249 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~--p~~~v~W~~~g--~~l~-----------------~~~~~~~~~--~~~~~~L~I~~~~ 249 (808)
..+.+|++|+|.|.+. +. +.+.+.|||++ ..+. ...++.... ..+..+|.|.+++
T Consensus 137 ~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 214 (247)
T 1svz_A 137 ELKKPGETVKISCKAT--NYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLK 214 (247)
T ss_dssp EEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred eeecCCCcEEEEEEEc--CcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCC
Confidence 5699999999999995 44 35789999953 2110 134555543 3455689999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 250 PEDSGVYTCRAVNA 263 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~ 263 (808)
.+|+|.|.|.|.|.
T Consensus 215 ~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 215 NEDTATYFCVRDRH 228 (247)
T ss_dssp GGGCEEEEEEEEEG
T ss_pred hhHCEEEEEEEecc
Confidence 99999999999985
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-19 Score=176.53 Aligned_cols=174 Identities=18% Similarity=0.274 Sum_probs=123.6
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC-------------------CCCCeEEEee--CcEEEEEECCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE-------------------DSSRITTKHD--FGYVAMDLSHV 569 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~-------------------~~~~~~~~~~--~~~~~L~I~~v 569 (808)
.+.+|++++|.|.+ .+.| .+.|.|+|++ ..+. ...|+.+..+ .+..+|.|.++
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 11 LVQSGGSLRLSCAT--SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred eEcCCCEEEEEEEe--cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 58899999999999 5655 6789999853 2110 1356776654 34678999999
Q ss_pred CCCCCEEEEEEEEeCCe-----eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCC
Q psy2145 570 RAEDEGIYICKATNALG-----EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTG 644 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~G-----~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~ 644 (808)
+.+|+|.|.|.|.|..| .....+.|.|...+. .+|.+......
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~i~~~~~~ 136 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT--------------------------------TPPSVYPLAPG 136 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC--------------------------------BCCEEEEECCC
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC--------------------------------CCCeEEEcccc
Confidence 99999999999999765 222335666654211 23655544332
Q ss_pred CccccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCCcEEEEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGSRFHVQHDFG----YVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
..+.+|+.++|.|.+ .|. |.| .|.|++||..+... .+......+ .+.|.|..+..+| |.|+|.|.|.+|
T Consensus 137 -~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~ 211 (222)
T 1q9r_B 137 -SAAQTNSMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS 211 (222)
T ss_dssp -SCCCCSSEEEEEEEE--EEEBSSCCEEEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred -ccccCCCcEEEEEEE--ccEECCCCEEEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCC
Confidence 246789999999999 574 888 99999999876432 111111222 2469999999999 999999999999
Q ss_pred ceEEEEEEE
Q psy2145 719 EAVSSTSLK 727 (808)
Q Consensus 719 ~~~~s~~l~ 727 (808)
.......|.
T Consensus 212 ~~~~~~~i~ 220 (222)
T 1q9r_B 212 STKVDKKIV 220 (222)
T ss_dssp TEEEEEECC
T ss_pred CCcEEEecc
Confidence 877666554
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=173.45 Aligned_cols=179 Identities=19% Similarity=0.259 Sum_probs=122.2
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeC-----CCCCceEEEEeCCEE------ee-----------ccCcEEEEee--CCe
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPV-----TDSNLKVEWFKNGRP------VT-----------IGHRFRPIHD--FGY 107 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~-----~~p~~~v~W~~~g~~------l~-----------~~~r~~~~~~--~~~ 107 (808)
.+..|..+ .+.+|++|+|.|.+... +.+.+.+.|||++.. +. ...|+.+..+ .+.
T Consensus 3 ~~~~p~~v-~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 81 (214)
T 2zg1_A 3 ELQVQKSV-TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKN 81 (214)
T ss_dssp EEECCSEE-EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTB
T ss_pred eeeCCcEE-EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCe
Confidence 35567777 89999999999999841 125789999998752 11 1246665443 245
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCcceE----EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCC
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVGFAE----VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~----~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (808)
.+|.|.+++.+|+|.|+|.+.+..+... ..+.|.|... ..+
T Consensus 82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~ 126 (214)
T 2zg1_A 82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL-----------------------------------IEK 126 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECC-----------------------------------CCC
T ss_pred EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecC-----------------------------------CCC
Confidence 5899999999999999999998753222 3566777532 224
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeec--CCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPV--SDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
|.+.... .+.+|+.++|.|.+.+. +.|.+.+.|++++..+.... . . ....|.|..+..+|+|.|+|.|.
T Consensus 127 p~i~~~~---~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~-~---~--~~~~L~i~~~~~~~~g~Y~C~a~ 197 (214)
T 2zg1_A 127 PDIHFLE---PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-T---T--RSSELTLTPRPEDHGTNLTCQMK 197 (214)
T ss_dssp CEEC--C---CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS-C---C--CSSEEEECCCTTCCSCEEEEEEE
T ss_pred CceecCc---cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC-c---e--eEEEEEEecccHHcCcEEEEEEE
Confidence 5554322 26799999999998421 24889999999987653221 1 1 12279999999999999999999
Q ss_pred eCceeEEEEEEEEE
Q psy2145 262 NALGQAVTSGNLLV 275 (808)
Q Consensus 262 n~~g~~~~~~~l~V 275 (808)
|..+....+..+.+
T Consensus 198 n~~~~~~~~~~v~l 211 (214)
T 2zg1_A 198 RQGAQVTTERTVQL 211 (214)
T ss_dssp CC----CCEEEEEC
T ss_pred eCCCCcceEEEEEE
Confidence 97665444444443
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=174.55 Aligned_cols=182 Identities=16% Similarity=0.228 Sum_probs=123.2
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
+...|..+ .+.+|++|+|.|.+. +.|.+.|.|||++ . .+. ...|+.+..+.+..+|.|.+++.
T Consensus 4 v~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 4 LTQSPATL-SVTPGNSVSLSCRAS--QSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (242)
T ss_dssp EEEECSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred EEEcCCeE-EEcCCCcEEEEEEeC--CCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh
Confidence 34557777 899999999999998 4677899999943 1 121 14577776667778999999999
Q ss_pred CCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeec
Q psy2145 118 EDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIK 196 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~ 196 (808)
+|+|.|.|.|.|..+.. ...+.|.|...+..... .. ....++.+...+....+.
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~------------------------~~-~~~~~~~~~~~~~~~~v~ 135 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGG------------------------GS-GGGGSDIQLQESGPSLVK 135 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC----------------------------------------CCEEEEECCSEEC
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcc------------------------cc-cccccceeeecCCcceec
Confidence 99999999999875432 23456666533210000 00 001123334444456699
Q ss_pred CCCeEEEEEEEeecCCC--CeEEEEeeC--CEEcc----------------CCCceEEEe--cCceEEEEEccCCCCCcE
Q psy2145 197 EGQRAHFECRLIPVSDN--TMKVEWFHN--NVPIK----------------SGSRFTETN--NFGFVALDIMQCLPEDSG 254 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~l~----------------~~~~~~~~~--~~~~~~L~I~~~~~~D~G 254 (808)
+|++|+|.|.+. +.+ .+.+.|+|+ |..+. ...++.+.. .....+|.|.+++.+|+|
T Consensus 136 ~G~~v~L~C~~~--g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G 213 (242)
T 2znx_A 136 PSQTLSLTCSVT--GDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTA 213 (242)
T ss_dssp TTSCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred CCCeEEEEEEEE--ccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCE
Confidence 999999999994 444 578999994 33221 134555543 234568999999999999
Q ss_pred EEEEEEEeC
Q psy2145 255 VYTCRAVNA 263 (808)
Q Consensus 255 ~Y~C~a~n~ 263 (808)
.|+|.|.|.
T Consensus 214 ~Y~C~a~~~ 222 (242)
T 2znx_A 214 TYYCANXDG 222 (242)
T ss_dssp EEEEEETTS
T ss_pred EEEEeccCC
Confidence 999999883
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=176.02 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=114.0
Q ss_pred cccCCCceEEEEEEeeCCCCCcE-----EEEEECCEecCCC--------C-------CeEEE---eeCcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLK-----VEWFRNEKPLEDS--------S-------RITTK---HDFGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~-----v~W~k~g~~l~~~--------~-------~~~~~---~~~~~~~L~I~~v~~ 571 (808)
.+.+|+++.|.|.+ .|.|.+. |.|+|++...... . +..+. ...+..+|.|.+++.
T Consensus 14 ~v~~G~~v~L~C~~--~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~ 91 (248)
T 3pv7_A 14 ITPLNDNVTIFCNI--FYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91 (248)
T ss_dssp EEETTSCEEECCEE--EESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred EEeCCCCEEEeeEE--ecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence 58899999999999 6777665 9999974332110 0 00000 011233599999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.|..|.....+.|.|... |.+..... ..+..|
T Consensus 92 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~~------------------------------------P~v~~~~~--~~~~~~ 133 (248)
T 3pv7_A 92 EEAGEYRCEVVVTPLKAQGTVQLEVVAS------------------------------------PASRLLLD--QVGMKE 133 (248)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEBC------------------------------------CEEEEECC--------
T ss_pred HHCeEEEEEEEeCCccceeEEEEEEecC------------------------------------CceEEecC--CccccC
Confidence 9999999999999999888899999864 33333322 235568
Q ss_pred ceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCc-------EEEEEe-CC----EEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 652 QSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSR-------FHVQHD-FG----YVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 652 ~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~-------~~~~~~-~~----~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
+.+.|.|.+ .| .|.| .|.|++||..|..+.. ...... .+ .+.|.|.....+|.|.|+|.|.|..
T Consensus 134 ~~~~L~C~~--~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~ 211 (248)
T 3pv7_A 134 NEDKYMCES--SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHAS 211 (248)
T ss_dssp --CEEEEEE--EEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTT
T ss_pred CCcEEEEEE--ccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCC
Confidence 888999999 57 8988 9999999975542210 011111 11 2579999999999999999999999
Q ss_pred cc--eEEEEEEEE
Q psy2145 718 GE--AVSSTSLKV 728 (808)
Q Consensus 718 G~--~~~s~~l~V 728 (808)
|. .+.++.|.|
T Consensus 212 ~~~~~~~~v~l~V 224 (248)
T 3pv7_A 212 LHTPLRSNFTLTA 224 (248)
T ss_dssp CSSCEEEEECC--
T ss_pred CCCCcEEEEEEEE
Confidence 97 555666777
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=176.34 Aligned_cols=190 Identities=17% Similarity=0.252 Sum_probs=123.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+..|..+ .+.+|++|+|.|.+.+...|.+.+.|||++ .. +. ...|+....+.+.++|.|.+++.+
T Consensus 6 v~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (256)
T 3ux9_B 6 LTQPPSV-SGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSE 84 (256)
T ss_dssp CBCCSEE-EECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred EecCCcE-EEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChh
Confidence 4456666 899999999999998522277899999942 21 11 235788777777889999999999
Q ss_pred CCeeEEEEEEecCcce---EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceee
Q psy2145 119 DSGTYTCRAVNLVGFA---EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEI 195 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v 195 (808)
|+|.|+|.|.|..+.. ...+.|.|...+........ +. + ........++.+. .+....+
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~------~~-------~----~~~~~~~~~~~~~-~~~~~~v 146 (256)
T 3ux9_B 85 DEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYN------VY-------Y----TKLSSSGSEVQLV-ESGGGLV 146 (256)
T ss_dssp GCEEEEEEEEETTTTEEEECCCEEEEEC---------------------------------------CCEEE-EECCEEE
T ss_pred hCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccce------eE-------E----eecCCCccceeEE-cCCCeEE
Confidence 9999999999865432 23456777543211000000 00 0 0000001122333 3445669
Q ss_pred cCCCeEEEEEEEeecCCC--CeEEEEeeC--CEEc------c-----------CCCceEEEec--CceEEEEEccCCCCC
Q psy2145 196 KEGQRAHFECRLIPVSDN--TMKVEWFHN--NVPI------K-----------SGSRFTETNN--FGFVALDIMQCLPED 252 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~l------~-----------~~~~~~~~~~--~~~~~L~I~~~~~~D 252 (808)
.+|++++|.|.+. +.+ .+.+.|||+ +..+ . ...++.+..+ .+..+|.|.+++.+|
T Consensus 147 ~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 224 (256)
T 3ux9_B 147 QPGGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAED 224 (256)
T ss_dssp CTTCCEEEEEEEE--SSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cCCCeEEEEEEEe--CCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhh
Confidence 9999999999994 444 789999996 3322 1 1235555543 446689999999999
Q ss_pred cEEEEEEEEeC
Q psy2145 253 SGVYTCRAVNA 263 (808)
Q Consensus 253 ~G~Y~C~a~n~ 263 (808)
+|.|+|.|.|.
T Consensus 225 sG~Y~C~~~~~ 235 (256)
T 3ux9_B 225 TAVYYCARYID 235 (256)
T ss_dssp CEEEEEEEEET
T ss_pred CEEEEEEEEcC
Confidence 99999999985
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=171.24 Aligned_cols=152 Identities=15% Similarity=0.220 Sum_probs=113.6
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC------------CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED------------SSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
.+.+|++|+|.|.+ .+ |.+.|.|+|++..+.. ..|+.+....+ +|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~~~G~~VtL~c~~--~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~--sL~I~~v~~~DsG~Y~C~~~ 80 (171)
T 1ccz_A 6 YGVVYGNVTFHVPS--NV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEMESP 80 (171)
T ss_dssp EEETTCCEEECCCC--SS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC--CEEECSCCGGGCEEEEEECT
T ss_pred EEEcCCCEEEcCCC--CC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC--eEEECCCChhhCceEEEEEe
Confidence 57899999999987 44 8899999999875421 12333322233 79999999999999999999
Q ss_pred eCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEee
Q psy2145 583 NALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVP 662 (808)
Q Consensus 583 N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~ 662 (808)
|..| ...+.|.|...+. +|.+...... ..|.|.+
T Consensus 81 n~~~--~~~~~L~V~~~~~---------------------------------~p~i~~~~~~---------~~L~C~~-- 114 (171)
T 1ccz_A 81 NITD--TMKFFLYVLEMVS---------------------------------KPMIYWECSN---------ATLTCEV-- 114 (171)
T ss_dssp TCCS--CEEEEEEEECCCC---------------------------------CCEEEEETTT---------TEEEEEC--
T ss_pred CCCC--cEEEEEEEECcCC---------------------------------CCEEEEecCC---------cEEEEEe--
Confidence 9888 5667888875422 3555433211 2799999
Q ss_pred CCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 663 VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 663 ~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
.|.|.|.|.|++||..|....+. .|.+. ...|+|.|+|.|.|.+|..+.++.|.+
T Consensus 115 ~~~p~p~i~W~~~~~~l~~~~~~---------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~c 169 (171)
T 1ccz_A 115 LEGTDVELKLYQGKEHLRSLRQK---------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVNC 169 (171)
T ss_dssp SSCSSCEEEEEETTEEEEEESSS---------EEEEE--CSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred CCCCCcEEEEEECCEECcCCcce---------EEEEe--ccCCCceEEEEEEcccCcccceeEEeC
Confidence 78899999999999998744332 23333 368999999999999999888877643
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=175.74 Aligned_cols=182 Identities=15% Similarity=0.260 Sum_probs=121.4
Q ss_pred cccCCCceEEEEEEeeCCC--CCcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGD--PTLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~--P~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
.+.+|++|+|.|.+ .+. |.+.+.|+|++ ..+ ....++.....++..+|.|.+++.+|+|.|.
T Consensus 13 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 90 (256)
T 3ux9_B 13 SGAPGQRVTISCSG--SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY 90 (256)
T ss_dssp EECTTCCEEEEEEC--CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred EEcCCCcEEEEEec--CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence 58899999999998 565 78899999842 211 1235777777777789999999999999999
Q ss_pred EEEEeCCee---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEE
Q psy2145 579 CKATNALGE---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655 (808)
Q Consensus 579 C~a~N~~G~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~ 655 (808)
|.|.|..|. ....+.|.|...+...... ..+... ........+.+.... ...+.+|++++
T Consensus 91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~------~~~~~~---------~~~~~~~~~~~~~~~--~~~v~~G~~v~ 153 (256)
T 3ux9_B 91 CQVRDNNENEWVFGGGTKLTVLGSGGSTITS------YNVYYT---------KLSSSGSEVQLVESG--GGLVQPGGSLR 153 (256)
T ss_dssp EEEEETTTTEEEECCCEEEEEC-------------------------------------CCEEEEEC--CEEECTTCCEE
T ss_pred EEEEECCCCceEECCCEEEEEECCCCCcCcc------ceeEEe---------ecCCCccceeEEcCC--CeEEcCCCeEE
Confidence 999997652 2234667776543210000 000000 000000112333332 24588999999
Q ss_pred EEEEEeeCCCC--CeEEEEEEC--CEEc------c-----------CCCcEEEEEe--CCEEEEEEccCCCCCcEEEEEE
Q psy2145 656 YDCRVVPVGDP--TMRFEWFVN--GVEL------K-----------MGSRFHVQHD--FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 656 l~C~v~~~g~P--~p~i~W~~~--g~~l------~-----------~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
|.|.+ .|.| .+.|.|||+ |..+ . ...|+.+..+ ....+|+|.++..+|+|.|+|.
T Consensus 154 L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 231 (256)
T 3ux9_B 154 LSCAA--SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA 231 (256)
T ss_dssp EEEEE--ESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEE--eCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEE
Confidence 99999 6766 789999996 4322 1 1247877765 4577899999999999999999
Q ss_pred EEeCC
Q psy2145 713 AINRA 717 (808)
Q Consensus 713 A~N~~ 717 (808)
|.|..
T Consensus 232 ~~~~~ 236 (256)
T 3ux9_B 232 RYIDF 236 (256)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 99974
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-19 Score=176.89 Aligned_cols=173 Identities=18% Similarity=0.301 Sum_probs=122.4
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEE----------------CCEecCCC---CCeEEEe-eCcEEEEEECCCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFR----------------NEKPLEDS---SRITTKH-DFGYVAMDLSHVRAEDE 574 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k----------------~g~~l~~~---~~~~~~~-~~~~~~L~I~~v~~~D~ 574 (808)
.+.+|+.|.|.|.+ .+.|.+.|.|+| ++..+... .|+.+.. ..+.++|.|.+++.+|+
T Consensus 12 ~v~~G~~v~L~C~~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~ 89 (246)
T 4dzb_B 12 ISKSGTSVKIECRS--LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS 89 (246)
T ss_dssp EEETTSCEEEEEEE--SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred EEeCCCcEEEEeEe--cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence 58899999999999 788999999999 44433332 4666554 34567899999999999
Q ss_pred EEEEEEEEeCCe----eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 575 GIYICKATNALG----EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 575 G~Y~C~a~N~~G----~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
|.|.|.|.|..+ .......|.|..... ...+|.+.........+.+
T Consensus 90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~P~i~~~~~~~~~~~~ 139 (246)
T 4dzb_B 90 SFYICSARTSGDFGEQFFGPGTRLTVLEDLK------------------------------NVFPPEVAVFEPSEAEISH 139 (246)
T ss_dssp EEEEEEECCSSGGGCCEECCCEEEEEESCGG------------------------------GCBCCEEEEECCCHHHHHH
T ss_pred EEEEEEEecCCCCcceEEcCCEEEEEecCCC------------------------------cccCCceEeecCCchhccC
Confidence 999999998754 222345666664211 0124655544444445778
Q ss_pred CceEEEEEEEeeCCCCCe--EEEEEECCEEccCCCcEEEEE--------eCCE---EEEEEccCCCCC-cEEEEEEEEeC
Q psy2145 651 GQSAHYDCRVVPVGDPTM--RFEWFVNGVELKMGSRFHVQH--------DFGY---VTLDITKCVPAD-SGVYMCKAINR 716 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~--------~~~~---~~L~I~~v~~~D-~G~Y~C~A~N~ 716 (808)
|+.++|.|.+ .|.|++ .|.|+|||..|..+.+..... ++.+ +.|.|.....+| .|.|+|.|.|.
T Consensus 140 g~~v~L~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~ 217 (246)
T 4dzb_B 140 TQKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 217 (246)
T ss_dssp HSEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred CCcEEEEEEE--ccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEec
Confidence 9999999999 575543 999999999987542221100 1111 358999888888 99999999998
Q ss_pred CcceE
Q psy2145 717 AGEAV 721 (808)
Q Consensus 717 ~G~~~ 721 (808)
.....
T Consensus 218 ~~~~~ 222 (246)
T 4dzb_B 218 GLSEN 222 (246)
T ss_dssp CBCTT
T ss_pred CCCCc
Confidence 76544
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=173.31 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=130.1
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.. .+.+|++|+|.|.+ .+ +...+.|||+|..+...... .........|.|.+++.+|+|.|+|.+
T Consensus 5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 79 (242)
T 1p6f_A 5 LPKPFIWAEPHF-MVPKEKQVTICCQG--NY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 79 (242)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEEC--CT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCCEEEeeCCC-ccCCCCcEEEEEee--CC-CCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEE
Confidence 457889888877 88999999999998 33 45789999999876421000 001123347999999999999999999
Q ss_pred EeCceeE--EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEE
Q psy2145 261 VNALGQA--VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEAR 338 (808)
Q Consensus 261 ~n~~g~~--~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~ 338 (808)
.|..+.. +..+.|.|... ..+|.+...+ ...+.+|+.++|.|.
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~----------------------------------~~~P~i~~~p-~~~v~~G~~vtL~C~ 124 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEM----------------------------------YDTPTLSVHP-GPEVISGEKVTFYCR 124 (242)
T ss_dssp EETTEECCCCCCEEEEEECC----------------------------------SCCCEEEEES-CSEEETTCEEEEEEE
T ss_pred ecCCccccCCcceEEEeecc----------------------------------cCCCceEccC-CCccCCCCcEEEEEe
Confidence 9875533 34567777541 1245555443 346889999999999
Q ss_pred EeecCCCccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCC--c-ceEEEEEEEEEecc
Q psy2145 339 LIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNEL--G-EAVTSSTLFVESKA 411 (808)
Q Consensus 339 ~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~--g-~~~~~~~l~V~~~~ 411 (808)
+ .+ +.+.+.|+|+|..+.. ..........|.|.++..+|+|.|+|.|.|.. . ..+..+.|.|.+.+
T Consensus 125 ~--~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~ 193 (242)
T 1p6f_A 125 L--DT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI 193 (242)
T ss_dssp C--TT-SCSEEEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred c--CC-CCCEEEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence 7 44 3569999999976653 11122344589999999999999999999864 1 22334778887643
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-18 Score=171.52 Aligned_cols=204 Identities=14% Similarity=0.139 Sum_probs=136.1
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--E---Ec-------------cCCCceEEEec--CceE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--V---PI-------------KSGSRFTETNN--FGFV 241 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~---~l-------------~~~~~~~~~~~--~~~~ 241 (808)
.++..+..+..+.+.+|++|+|.|.+.+...+.+.+.|||.. . .+ ....++.+..+ .+..
T Consensus 7 ~~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 86 (257)
T 3gkz_A 7 DKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQV 86 (257)
T ss_dssp --CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEE
T ss_pred CccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceE
Confidence 345555667788899999999999996433467899999932 1 11 11245555532 3566
Q ss_pred EEEEccCCCCCcEEEEEEEEeC----ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCe
Q psy2145 242 ALDIMQCLPEDSGVYTCRAVNA----LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317 (808)
Q Consensus 242 ~L~I~~~~~~D~G~Y~C~a~n~----~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~ 317 (808)
+|.|.+++.+|+|.|+|.|.|. .+.....+.|.|...+.... ........++.
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~-----------------------~~~~~~~~~~~ 143 (257)
T 3gkz_A 87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGG-----------------------GGSGGGGSQIV 143 (257)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--------------------------------CTTCCCCCC
T ss_pred EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcc-----------------------cccCCCccceE
Confidence 8999999999999999999996 22233456777764310000 00000112456
Q ss_pred eccCCCceEeecCCeEEEEEEEeecCCCcc-EEEEEEC--CEecc------------CCCcEEEEeeCcEEEEEEccCCC
Q psy2145 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKL-KVTWLRN--GVPIQ------------ASNRVSTMHDFGYVALNFKYTYP 382 (808)
Q Consensus 318 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~ 382 (808)
+...+....+.+|+.++|.|.+ .+.+.+ .+.|+|+ |..+. ...++.....+...+|.|.++..
T Consensus 144 ~~~~p~~~~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 221 (257)
T 3gkz_A 144 LTQSPAIMSASPGEKVTLTCSA--SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA 221 (257)
T ss_dssp EECSCSEEEECTTCCEEEEEEE--SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEcCCceEEEeCCCcEEEEEEE--ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh
Confidence 6667777889999999999999 677776 9999993 33221 12566666666777899999999
Q ss_pred CCCeEEEEEEEcCCcceEEE-EEEEEEec
Q psy2145 383 EDSGTYTCRAVNELGEAVTS-STLFVESK 410 (808)
Q Consensus 383 ~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~ 410 (808)
+|+|.|.|.|.|.....-.. +.|.|...
T Consensus 222 ~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~ 250 (257)
T 3gkz_A 222 EDAASYFCHQWSSFPFTFGSGTKLEIKRA 250 (257)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred HHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence 99999999998854332222 56666654
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=180.51 Aligned_cols=175 Identities=19% Similarity=0.264 Sum_probs=125.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC-----CceEEEEeCC--EE---ee---------ccCcEEEEeeCCeEEEEEc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS-----NLKVEWFKNG--RP---VT---------IGHRFRPIHDFGYVALDII 113 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p-----~~~v~W~~~g--~~---l~---------~~~r~~~~~~~~~~~L~I~ 113 (808)
...|..+ .+.+|++|+|.|.+.+ .| .+.|.|||++ .. +. ...|+.+..+++..+|.|.
T Consensus 38 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 114 (252)
T 3bkj_L 38 TQTPLSL-PVNLGEQASISCRSSQ--SIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS 114 (252)
T ss_dssp EEECSEE-EECTTSCEEEEEEESS--CCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred EeCCceE-EEeCCCcEEEEEEcCC--CccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence 3446777 8999999999999984 45 5899999954 11 11 1357777777778899999
Q ss_pred ccCcCCCeeEEEEEEecCcceE-EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCc
Q psy2145 114 DTIPEDSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKN 192 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 192 (808)
+++.+|+|.|+|.|.|..+... ....|.|... ..+|.+...+..
T Consensus 115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~P~v~~~~~~ 159 (252)
T 3bkj_L 115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKRA-----------------------------------DAAPTVSIFPPS 159 (252)
T ss_dssp SCCGGGCEEEEEEECSBSSCEECCCEEEEECCC-----------------------------------CBCCEEEEECCC
T ss_pred CCCcccCEEEEEEEEcCCccEECCCEEEEEeCC-----------------------------------CcCcEEEEeCCC
Confidence 9999999999999998765322 2345666421 246777766555
Q ss_pred eeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE--E-EecCce----EEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT--E-TNNFGF----VALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~--~-~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
..+.+|+.++|.|.+.+ ..|. ..|.|+|||..+..+.... . ...++. ..|.|.++..+|+|.|+|.|.|..
T Consensus 160 ~~~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~ 238 (252)
T 3bkj_L 160 SEQLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT 238 (252)
T ss_dssp HHHHHHTEEEEEEEEEE-EBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTT
T ss_pred hhhcCCCcEEEEEEEee-EeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCC
Confidence 45558999999999964 2344 4899999999886541111 1 112222 359999999999999999999975
Q ss_pred ee
Q psy2145 265 GQ 266 (808)
Q Consensus 265 g~ 266 (808)
..
T Consensus 239 ~~ 240 (252)
T 3bkj_L 239 ST 240 (252)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-19 Score=176.45 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=124.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCC-ceEEEEeCCEEeec----------------cCcEEEE-------eeCCeE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSN-LKVEWFKNGRPVTI----------------GHRFRPI-------HDFGYV 108 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~-~~v~W~~~g~~l~~----------------~~r~~~~-------~~~~~~ 108 (808)
+..|+++ .+..|++|+|.|.+.+...+. ..|.|+|++..+.. ..+.... ...+..
T Consensus 5 V~vp~~V-~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T 4fmk_A 5 VRVLPEV-RGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDA 83 (225)
T ss_dssp EECCSEE-EEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBC
T ss_pred EEeCCEE-EEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcE
Confidence 3456677 889999999999998522222 25899997754321 1122211 122345
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEE-EEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQA-TLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~-~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
+|.|.+++.+|+|.|+|.|.|..|...... .+.+ ..+|.+.
T Consensus 84 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~ 125 (225)
T 4fmk_A 84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRV--------------------------------------IAQPENH 125 (225)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEE--------------------------------------EBCCEEE
T ss_pred EEEEccCCHHHCcceEEEEEeCCCcceeeeeeeee--------------------------------------ecCCcee
Confidence 799999999999999999999877554433 3333 2345555
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
..+.......++.+.+.|.+. .+.|++.+.|++++..+..........++. ...|.|.++..+|+|.|+|+|.|..
T Consensus 126 ~~~~~~~~~~~~~~~~~c~~~-~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~ 204 (225)
T 4fmk_A 126 AEAQEVTIGPQSVAVARCVST-GGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHES 204 (225)
T ss_dssp EEECCBCCSSSCEEEEEEEEE-EEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred ecccceeecceeeeeeeeeec-CCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCC
Confidence 556666677888888888875 478889999999887654433222222222 1369999999999999999999988
Q ss_pred eeEEEEEEEEE
Q psy2145 265 GQAVTSGNLLV 275 (808)
Q Consensus 265 g~~~~~~~l~V 275 (808)
|....++.++|
T Consensus 205 ~~~~~~~~v~l 215 (225)
T 4fmk_A 205 FEEPILLPVTL 215 (225)
T ss_dssp CSSCEEEEEEC
T ss_pred CCeEEEEEEEE
Confidence 87655444443
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=175.59 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=122.3
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCCC-----CcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEEC
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDP-----TLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLS 567 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P-----~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~ 567 (808)
...+.++ .+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+ ....|+.+...++..+|.|.
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 5 TQTPLYL-PVSLGDQASISCRS--SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp EEECSEE-EECTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred EecCCeE-EecCCCCEEEEEeC--CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 3334443 68899999999999 7887 6899999842 211 01457777766777799999
Q ss_pred CCCCCCCEEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 568 HVRAEDEGIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 568 ~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
+++.+|+|.|.|.|.|..+.. ...+.|.|...+..... +. ....+|.+...... .
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~---~~--------------------~~~~~~~~~~~~~~-~ 137 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGG---GS--------------------GGGGSEVQLQQSGP-E 137 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC--------------------------------------CCEEEECCC-E
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCcccccc---cc--------------------ccccCceEEeCCCc-e
Confidence 999999999999999986542 22356777653210000 00 00001222222222 3
Q ss_pred cccCCceEEEEEEEeeCCCC--CeEEEEEECC--EEc------c-----------CCCcEEEEEe--CCEEEEEEccCCC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDP--TMRFEWFVNG--VEL------K-----------MGSRFHVQHD--FGYVTLDITKCVP 703 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P--~p~i~W~~~g--~~l------~-----------~~~~~~~~~~--~~~~~L~I~~v~~ 703 (808)
.+.+|++++|.|.+ .|.| .+.|.|||++ ..+ . ...|+.+..+ .+..+|.|.++..
T Consensus 138 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 215 (247)
T 1svz_A 138 LKKPGETVKISCKA--TNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN 215 (247)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred eecCCCcEEEEEEE--cCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence 58899999999999 6764 6799999963 211 0 1457777653 4567999999999
Q ss_pred CCcEEEEEEEEeC
Q psy2145 704 ADSGVYMCKAINR 716 (808)
Q Consensus 704 ~D~G~Y~C~A~N~ 716 (808)
+|+|.|+|.|.|.
T Consensus 216 ~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 216 EDTATYFCVRDRH 228 (247)
T ss_dssp GGCEEEEEEEEEG
T ss_pred hHCEEEEEEEecc
Confidence 9999999999996
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=173.81 Aligned_cols=181 Identities=16% Similarity=0.242 Sum_probs=122.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc---------------cCCCceEEEe-cCceEEEEEcc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI---------------KSGSRFTETN-NFGFVALDIMQ 247 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l---------------~~~~~~~~~~-~~~~~~L~I~~ 247 (808)
|...+..+.+.+|++|+|.|.. +.|.+.|.|+|+ |..+ ....++.+.. ..+..+|.|.+
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~---~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 79 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCNQ---TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL 79 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEE---CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred ceECccceEEeCCCEEEEEeec---CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence 5566778899999999999994 677889999995 2111 1134555543 23445899999
Q ss_pred CCCCCcEEEEEEEEeCceeE-----EEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCC
Q psy2145 248 CLPEDSGVYTCRAVNALGQA-----VTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM 322 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~ 322 (808)
++.+|+|.|+|.|.|..|.. ...+.|.|...+.... + ......+.+...+
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~---------------------p----~~~~~~~~v~~~p 134 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK---------------------K----DAAKKDGQVRQSP 134 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHH---------------------H----HHHHHHTCCEEEC
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCc---------------------C----CcccceeeEEccC
Confidence 99999999999999976531 1235677654220000 0 0000012455556
Q ss_pred CceEeecCCeEEEEEEEeecCCCccEEEEEECC--Ee---c---------cCCCcEEEEe--eCcEEEEEEccCCCCCCe
Q psy2145 323 RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG--VP---I---------QASNRVSTMH--DFGYVALNFKYTYPEDSG 386 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g--~~---l---------~~~~~~~~~~--~~~~~~L~I~~v~~~d~G 386 (808)
....+.+|+.++|.|.+ .+.|.+.+.|+|++ .. + ....++.+.. ..+..+|.|.++..+|+|
T Consensus 135 ~~~~v~~G~~v~L~C~~--~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G 212 (238)
T 2p1y_A 135 QSLTVWEGETAILNCSY--ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA 212 (238)
T ss_dssp SEEEEETTSCEEEEEEC--CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCE
T ss_pred ceEEEeCCCeEEEEEEE--ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCE
Confidence 67788999999999998 78888999999964 11 1 1234555542 334568999999999999
Q ss_pred EEEEEEEcCC
Q psy2145 387 TYTCRAVNEL 396 (808)
Q Consensus 387 ~Y~C~a~n~~ 396 (808)
.|+|.|.|..
T Consensus 213 ~Y~C~a~n~~ 222 (238)
T 2p1y_A 213 TYFCAAIDTN 222 (238)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEeeCC
Confidence 9999999974
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=171.00 Aligned_cols=178 Identities=12% Similarity=0.158 Sum_probs=124.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee--------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT--------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~--------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+.....+.|.|||.. . .+. ...|+.+..+ .+.++|.
T Consensus 4 ~~q~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (220)
T 2fbj_H 4 LLESGGG-LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQ 82 (220)
T ss_dssp EEEECCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEE
T ss_pred EecCCCe-EecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEE
Confidence 3456666 899999999999998421125789999842 2 121 1357777654 4667999
Q ss_pred EcccCcCCCeeEEEEEEecCcc---eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGF---AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
|.+++.+|+|.|.|.+.|..+. ....+.|.|.... ..+|.+..
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------~~~P~v~~ 128 (220)
T 2fbj_H 83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES----------------------------------ARNPTIYP 128 (220)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC----------------------------------CBCCEEEE
T ss_pred ECCCChhhCEEEEEEEeccccccceecCCEEEEecCCC----------------------------------CCCCEEEE
Confidence 9999999999999999987542 1233567665321 24667766
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC--eEEEEeeCCEEccC-CCceEEEecCce----EEEEEccCCCCCcEEEEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNNVPIKS-GSRFTETNNFGF----VALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~~~g~~l~~-~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.+ ...+.+|+.++|.|.+.+ ..|. +.|.|+++|..+.. ...... ..++. ..|.|.....+|.|.|+|.|.
T Consensus 129 ~~-~~~~~~g~~v~L~C~~~g-~~P~~~~~v~W~~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~ 205 (220)
T 2fbj_H 129 LT-LPPALSSDPVIIGCLIHD-YFPSGTMNVTWGKSGKDITTVNFPPAL-ASGGRYTMSNQLTLPAVECPEGESVKCSVQ 205 (220)
T ss_dssp EC-CCSSSCCSSEEEEEEEEE-EBSCCCEEEEESCCCSSCEEEECCCEE-CSSSCEEEEEEEEECGGGSCTTCEEEEEEE
T ss_pred ee-cccccCCCcEEEEEEEEe-EECCCcEEEEEecCCEecceEecCceE-CCCCCEEEEEEEEECHHHcCCCCeEEEEEE
Confidence 55 455789999999999963 3355 89999999987621 011111 12222 258999999999999999999
Q ss_pred eCceeEE
Q psy2145 262 NALGQAV 268 (808)
Q Consensus 262 n~~g~~~ 268 (808)
|..|...
T Consensus 206 n~~~~~~ 212 (220)
T 2fbj_H 206 HDSNPVQ 212 (220)
T ss_dssp ETTSCCE
T ss_pred cCCCceE
Confidence 9887654
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=175.97 Aligned_cols=189 Identities=14% Similarity=0.180 Sum_probs=108.4
Q ss_pred CccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEE
Q psy2145 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQ 137 (808)
Q Consensus 58 ~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 137 (808)
++..+.+|++++|.|.+ |.+.|.|||+|..|..+ .....+|.|.+++.+|+|.|+|.+.+. +. ..
T Consensus 11 ~~~~~~~G~~v~L~C~~-----p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~-~s--~~ 75 (204)
T 1sy6_A 11 KVYDYQEDGSVLLTCDA-----EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQN-KS--KP 75 (204)
T ss_dssp EECCCCSSSEEEEEECS-----CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSS-CC--CC
T ss_pred eEEeecCCCeEEEEEcC-----CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCC-CC--ee
Confidence 33345789999999997 45799999999988643 112236999999999999999997543 22 22
Q ss_pred EEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEE
Q psy2145 138 ATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKV 217 (808)
Q Consensus 138 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v 217 (808)
+.|.|.......... ..........++.... .......+|.+...+. ....+|++++|.|. +.|.+.|
T Consensus 76 ~~v~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~----g~p~p~i 143 (204)
T 1sy6_A 76 LQVYYRMGSADDAKK--DAAKKDDAKKDDAKKD-----GSDGNEEMGGITQTPY-KVSISGTTVILTCP----QYPGSEI 143 (204)
T ss_dssp EEEEEEC-------------------------------------------CCCC-EEEEETTEEEEECS----CCCSSCE
T ss_pred EEEEEEEeccccccc--cccccccccccccccc-----cccccccccceecCCc-eeeecCCcEEEEcC----CCCCCce
Confidence 444443100000000 0000000000000000 0000011222322222 22238999999997 4677789
Q ss_pred EEeeCCEEccCCC-ceEEEecCceEEEEEccC-CCCCcEEEEEEEEeCceeE-EEEEEEEE
Q psy2145 218 EWFHNNVPIKSGS-RFTETNNFGFVALDIMQC-LPEDSGVYTCRAVNALGQA-VTSGNLLV 275 (808)
Q Consensus 218 ~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~n~~g~~-~~~~~l~V 275 (808)
.|+|||..+.... ...+....+ +|.|.++ +.+|+|.|+|.|.|..|.. +....|.|
T Consensus 144 ~W~k~~~~l~~~~~~~~~~~~~~--~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 144 LWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EEEETTEEESCCTTCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred EEEECCEECCCccCCceEecCCC--EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 9999999986532 111221233 8999999 9999999999999999963 33444443
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=180.40 Aligned_cols=173 Identities=16% Similarity=0.236 Sum_probs=120.1
Q ss_pred cccCCCceEEEEEEeeCCCC-Cc-EEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP-TL-KVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P-~~-~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
.+.+|++++|.|.+ .+.+ .+ .|.|+|++ ..+ ....++......+..+|.|.+++.+|+|.|+
T Consensus 30 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 107 (234)
T 2j6e_L 30 SGTPGQRVTISCSG--SSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYY 107 (234)
T ss_dssp CBCTTCEEEEEEEC--CTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEE
T ss_pred EeeCCCcEEEEEEe--cCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEE
Confidence 68999999999998 5644 34 69999963 222 1135777666667779999999999999999
Q ss_pred EEEEeCCee---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEE
Q psy2145 579 CKATNALGE---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAH 655 (808)
Q Consensus 579 C~a~N~~G~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~ 655 (808)
|.|.|..|. ....+.|.|...+ ..+|.+...... ..+.+|+.++
T Consensus 108 C~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------~~~p~v~~~~~~-~~~~~g~~v~ 154 (234)
T 2j6e_L 108 CATWDDSLSAVIFGGGTKLTVLGQP--------------------------------KAAPSVTLFPPS-SEELQANKAT 154 (234)
T ss_dssp EEEEETTTTEEEECCCBCCCBCCCC--------------------------------CCCCCCCEECCC-HHHHTTSCCC
T ss_pred EEEEcCCcceeEecCCEEEEEecCC--------------------------------CCCCcccccCCC-hhHhcCCceE
Confidence 999999873 1122334442211 023554443332 2344689999
Q ss_pred EEEEEeeCCC-CC-eEEEEEECCEEccCCCcEE-EE--EeC---CEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 656 YDCRVVPVGD-PT-MRFEWFVNGVELKMGSRFH-VQ--HDF---GYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 656 l~C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~~-~~--~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
|.|.+ .|. |. +.|.|+|||+.+..+.... .. .++ ..+.|.|.++..+|+|.|+|.|.|..+....++
T Consensus 155 L~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 155 LVCLI--SDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp EEECC--CBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred EEEEE--EEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence 99999 665 44 4999999999987542110 00 111 235799999999999999999999988765554
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-18 Score=167.50 Aligned_cols=183 Identities=14% Similarity=0.139 Sum_probs=123.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee--------------ccCcEEEEeeC--CeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT--------------IGHRFRPIHDF--GYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~--------------~~~r~~~~~~~--~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+.....+.|.|||++ . .+. ...|+.+..+. +.++|.
T Consensus 4 v~qp~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (223)
T 1dee_B 4 LVESGGG-VVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQ 82 (223)
T ss_dssp EEEECCC-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred EEcCCCE-EEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEE
Confidence 3456677 899999999999998421124789999843 2 121 13577776543 567999
Q ss_pred EcccCcCCCeeEEEEEEecCc---c---eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCe
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG---F---AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g---~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 185 (808)
|.+++.+|+|.|.|.+.+..| . ....+.|.|.... ..+|.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------~~~P~ 128 (223)
T 1dee_B 83 MNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS----------------------------------ASAPT 128 (223)
T ss_dssp ECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC----------------------------------CBCCE
T ss_pred ECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC----------------------------------CCCCE
Confidence 999999999999999998653 1 1123467665311 23565
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEee-CCEEccCCCceE-EEecCc---eEEEEEccCCC--CCcEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFH-NNVPIKSGSRFT-ETNNFG---FVALDIMQCLP--EDSGVYT 257 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~-~g~~l~~~~~~~-~~~~~~---~~~L~I~~~~~--~D~G~Y~ 257 (808)
+........+.+|+.++|.|.+.+ ..|.+ .|.|++ ||..+.....+. ...++. ...|.|..... +|.|.|+
T Consensus 129 i~~~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~ 207 (223)
T 1dee_B 129 LFPLVSCENSNPSSTVAVGCLAQD-FLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVV 207 (223)
T ss_dssp EEEEECTTCCCSSSEEEEEEEEEE-EBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEE
T ss_pred EEEecCCcccCCCCcEEEEEEEEE-EeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEE
Confidence 554333334679999999999963 33655 999999 998875410000 001111 12588888776 8899999
Q ss_pred EEEEeCceeEEEEE
Q psy2145 258 CRAVNALGQAVTSG 271 (808)
Q Consensus 258 C~a~n~~g~~~~~~ 271 (808)
|.|.|..|......
T Consensus 208 C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 208 CKVQHPNGNKEKDV 221 (223)
T ss_dssp EEEECTTCCEEEEE
T ss_pred EEEEeCCCCCcccc
Confidence 99999888765543
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=175.22 Aligned_cols=190 Identities=15% Similarity=0.241 Sum_probs=125.2
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCC------CcEEEEEEC--CEecC------------CCCCeEEEeeCcEEE
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP------TLKVEWFRN--EKPLE------------DSSRITTKHDFGYVA 563 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P------~~~v~W~k~--g~~l~------------~~~~~~~~~~~~~~~ 563 (808)
+.+...+..+ .+.+|++|+|.|.+ .+.| .+.|.|+|+ |..+. ...|+.+....+..+
T Consensus 6 ~~v~q~p~~v-~v~~G~~v~L~C~~--~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~ 82 (264)
T 2gjj_A 6 IVLTQTPSSL-PVSVGEKVTMTCKS--SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFT 82 (264)
T ss_dssp CCEEEECSEE-EEETTCCEEEEEEE--SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred cceEecCCeE-EecCCCcEEEEeEc--CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEE
Confidence 4455555554 68999999999999 7777 678999985 33221 246777766666779
Q ss_pred EEECCCCCCCCEEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 564 MDLSHVRAEDEGIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 564 L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|...+...+ +. ..+.. .....+|.+....
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~----~~------------~~~~~--~~~~~~~~~~~~~ 144 (264)
T 2gjj_A 83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSG----GG------------GSGGG--GSGGGGSEVQLQQ 144 (264)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------------------------CCEEEE
T ss_pred EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccc----cc------------ccccc--ccccccCcEEEeC
Confidence 9999999999999999999986532 2335777775431000 00 00000 0000012222111
Q ss_pred CCCccccCCceEEEEEEEeeCCCCC--eEEEEEEC--CEE---cc--------------CCCcEEEEEe--CCEEEEEEc
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVGDPT--MRFEWFVN--GVE---LK--------------MGSRFHVQHD--FGYVTLDIT 699 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g~P~--p~i~W~~~--g~~---l~--------------~~~~~~~~~~--~~~~~L~I~ 699 (808)
.....+.+|++++|.|.+ .|.|. +.|.|||+ |.. |. ...|+.+..+ ....+|.|.
T Consensus 145 ~~~~~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 222 (264)
T 2gjj_A 145 SGPEVVKTGASVKISCKA--SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLN 222 (264)
T ss_dssp CCCEEECTTCCEEEEEEE--ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCCEEEcCCCcEEEEEEE--eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEEC
Confidence 122468899999999999 67764 89999996 322 21 1356666543 356799999
Q ss_pred cCCCCCcEEEEEEEEeC
Q psy2145 700 KCVPADSGVYMCKAINR 716 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~N~ 716 (808)
++..+|+|.|.|.|.|.
T Consensus 223 ~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 223 SLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCCGGGCEEEEEEEECS
T ss_pred cCCcccCEEEEEEEecC
Confidence 99999999999999996
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-19 Score=174.04 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=118.7
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEEC--CEecC----------------CCCCeEEEee--CcEEEEEECCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRN--EKPLE----------------DSSRITTKHD--FGYVAMDLSHVRAE 572 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~--g~~l~----------------~~~~~~~~~~--~~~~~L~I~~v~~~ 572 (808)
.+.+|++++|.|.+ .+.| .+.|.|+|+ |..+. ...|+.+..+ .+.++|.|.+++.+
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 88 (210)
T 3d9a_H 11 LVKPSQTLSLTCSV--TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE 88 (210)
T ss_dssp EECTTSCEEEEEEE--ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred EecCCCcEEEEEEE--ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence 58899999999999 5655 488999985 32211 2357776653 34568999999999
Q ss_pred CCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCc
Q psy2145 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ 652 (808)
Q Consensus 573 D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~ 652 (808)
|+|.|.|.|.|.. .......|.|...+. .+|.+...... ..+.+|+
T Consensus 89 D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~--------------------------------~~P~v~~~~~~-~~~~~g~ 134 (210)
T 3d9a_H 89 DTATYYCANWDGD-YWGQGTLVTVSAAKT--------------------------------TPPSVYPLAPG-SAAQTNS 134 (210)
T ss_dssp GCEEEEEEETTSS-CBCCCEEEEECCCCC--------------------------------BCCEEEEECCT-TSCCCSS
T ss_pred cCEEEEEEEecCc-ccccceEEEeccCCC--------------------------------CCCEEEEecCC-cccccCC
Confidence 9999999999964 112234566653211 23655544332 3578899
Q ss_pred eEEEEEEEeeCCC-CCe-EEEEEECCEEccCCCcEEEEEeC---CEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 653 SAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGSRFHVQHDF---GYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 653 ~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
.++|.|.+ .|. |.| .|.|+++|..+.......+..++ ..+.|.|..+..+| |.|+|.|.|.+|......
T Consensus 135 ~v~L~C~~--~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 135 MVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 208 (210)
T ss_dssp EEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred cEEEEEEE--eeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence 99999999 576 888 99999999865311111111111 13469999998877 999999999999876543
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=171.55 Aligned_cols=185 Identities=11% Similarity=0.117 Sum_probs=122.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeCC--EE---e---e-----------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKNG--RP---V---T-----------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~g--~~---l---~-----------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++|+|.|.+.+ .+ .+.|.|||++ .. + . ...|+.+..+ .+..+
T Consensus 4 l~qp~~~-~v~~G~~v~L~C~~~~--~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (227)
T 1mju_H 4 LQQPGAE-LVKPGASVKLSCKASG--YTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAY 80 (227)
T ss_dssp EECCSEE-EECTTCCEEEEEEEES--SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred EcCCCCe-EEcCCCCEEEEEEecC--CccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEE
Confidence 4567777 8999999999999984 44 6789999953 22 1 1 1357777654 46779
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc-eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF-AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
|.|.+++.+|+|.|.|.+.|..+. ....+.|.|.... ..+|.+..
T Consensus 81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~----------------------------------~~~P~v~~ 126 (227)
T 1mju_H 81 MQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK----------------------------------TTAPSVYP 126 (227)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC----------------------------------CBCCEEEE
T ss_pred EEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC----------------------------------CCCCEEEE
Confidence 999999999999999999986321 1123467665311 23555554
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccC--CCceEEEecC---ceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKS--GSRFTETNNF---GFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~--~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
......+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+.. ..... ..+ ....|.|.++..+| |.|+|.|.|
T Consensus 127 ~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n 202 (227)
T 1mju_H 127 LAPVCGDTSGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAH 202 (227)
T ss_dssp ECCCC------CEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEE
T ss_pred ecCCccccCCCcEEEEEEeec-EeCCCeEEEEecCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEE
Confidence 433345678999999999953 23655 9999999987531 11111 111 12369999998888 999999999
Q ss_pred CceeEEEEEEEEEeeC
Q psy2145 263 ALGQAVTSGNLLVHSK 278 (808)
Q Consensus 263 ~~g~~~~~~~l~V~~~ 278 (808)
..+.......+.+..+
T Consensus 203 ~~~~~~~~~~~~~~~~ 218 (227)
T 1mju_H 203 PASSTKVDKKIEPRGP 218 (227)
T ss_dssp GGGTEEEEEECCCCCC
T ss_pred CCCCcceEEEeCCCCC
Confidence 7776665566655443
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=169.32 Aligned_cols=180 Identities=17% Similarity=0.213 Sum_probs=123.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee----------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT----------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~----------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.|.|||++ .. +. ...|+.+..+ .+.++
T Consensus 4 v~~p~~~-~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 82 (220)
T 1pz5_B 4 VEESGGG-LVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVY 82 (220)
T ss_dssp EEEECCE-EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred EeccCCE-EEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEE
Confidence 3457777 899999999999998421126799999953 21 21 0357776654 35679
Q ss_pred EEEcccCcCCCeeEEEEEEecCcce-E--EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGFA-E--VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~~-~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
|.|.+++.+|+|.|+|.+.|..+.. . ..+.|.|.... ..+|.+
T Consensus 83 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~i 128 (220)
T 1pz5_B 83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT----------------------------------TTAPSV 128 (220)
T ss_dssp EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC----------------------------------CBCCEE
T ss_pred EEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC----------------------------------CCCCeE
Confidence 9999999999999999999875432 1 34566665311 346666
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEcc--CCCceEEEecC---ceEEEEEccCCCCCcEEEEEEE
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIK--SGSRFTETNNF---GFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~--~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
...+....+.+|+.++|.|.+.+ ..|.+ .|.|++++..+. ...... ..+ ....|.|.++..+| |.|+|.|
T Consensus 129 ~~~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a 204 (220)
T 1pz5_B 129 YPLVPGCSDTSGSSVTLGCLVKG-YFPEPVTVKWNYGALSSGVRTVSSVL--QSGFYSLSSLVTVPSSTWPS-QTVICNV 204 (220)
T ss_dssp EEECCCSCCSCSSSEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEE--ETTEEEEEEEEEECGGGTTT-SCCEEEE
T ss_pred EEcccccccCCCCcEEEEEEEEE-EeCCCeEEEEecCCcccceEEcCCcc--cCCeEEEEEEEEEcchhcCC-ceEEEEE
Confidence 65554555788999999999953 33777 999999887421 011010 111 12368999998866 9999999
Q ss_pred EeCceeEEEEE
Q psy2145 261 VNALGQAVTSG 271 (808)
Q Consensus 261 ~n~~g~~~~~~ 271 (808)
.|..|....++
T Consensus 205 ~n~~~~~~~~~ 215 (220)
T 1pz5_B 205 AHPASKVDLIK 215 (220)
T ss_dssp EEGGGTEEEEE
T ss_pred EECCccEeeee
Confidence 99998655543
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=166.78 Aligned_cols=153 Identities=17% Similarity=0.277 Sum_probs=111.4
Q ss_pred cccCCCceEEEEEEeeCC-CCCcEEEEEEC-CEecC------------CC--CCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVG-DPTLKVEWFRN-EKPLE------------DS--SRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g-~P~~~v~W~k~-g~~l~------------~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
.+.+|++|+|.|.+ .+ .+.+.|.|+|+ +..+. .. .|+.+.... .+|.|.+++.+|+|.|+
T Consensus 10 ~v~~G~~vtL~c~~--~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~--~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 10 NAITGSNVTLTILK--HPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN--GALRIYNVSKEDRGDYY 85 (180)
T ss_dssp EEETTSCEEECCCS--SCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTT--CCEEECSCCGGGCEEEE
T ss_pred EEEeCCCEEEeCCC--CCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCC--ccEEEcCCCHHHCeEEE
Confidence 58899999999987 33 34689999994 32221 11 455552222 37999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEE
Q psy2145 579 CKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDC 658 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C 658 (808)
|.+.+.. .....+.|.|...+ .+|.+.. .++.++|.|
T Consensus 86 C~v~~~~-~~~~~~~L~V~~~~---------------------------------~~P~i~~---------~~~~v~L~C 122 (180)
T 2dru_A 86 MRMLHET-EDQWKITMEVYEMV---------------------------------SKPMIYW---------ECSNATLTC 122 (180)
T ss_dssp EEEESSS-EEEEEEEEEEECCC---------------------------------CCCEEEE---------EGGGTEEEE
T ss_pred EEEEcCC-eEEEEEEEEEECCC---------------------------------CCCEEEe---------cCCCEEEEE
Confidence 9998876 66677888887532 1355442 345699999
Q ss_pred EEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2145 659 RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 659 ~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~ 727 (808)
.+. .| |.|.|.|++||..|.. ..+ .+|.+.. .+|+|.|+|.|.|.+|..+++..+.
T Consensus 123 ~~~-~g-p~p~i~W~~~~~~l~~-------~~~--~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i~ 178 (180)
T 2dru_A 123 EVL-EG-TDVELKLYQGKEHLRS-------LRQ--KTMSYQW--TNLRAPFKCKAVNRVSQESEMEVVN 178 (180)
T ss_dssp ECS-SC-TTCEEEEEETTEEEEE-------ESS--SEEEEEC--SCCSSCEEEEEEETTEEEEEEECCC
T ss_pred EeC-CC-CCCEEEEEECCeECcC-------CCC--CEEEEEE--hhcCccEEEEEecCcCccccceeEe
Confidence 983 34 9999999999998861 112 2556633 7899999999999999988776653
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-18 Score=175.43 Aligned_cols=199 Identities=14% Similarity=0.220 Sum_probs=130.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeCC--EE---ee--------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKNG--RP---VT--------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~g--~~---l~--------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++++|.|.+.+ .+ .+.+.|||++ .. |. ...|+.+..+ .+..+
T Consensus 26 v~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 102 (291)
T 2gki_A 26 LQQSGPE-LVKPGASVKMSCKASG--YTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAY 102 (291)
T ss_dssp EEECCCE-EECTTCCEEEEEEEES--SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEE
T ss_pred EEcCCcE-EecCCCCEEEEEeccC--CcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEE
Confidence 3456677 8999999999999984 44 5789999952 21 11 1256665543 35679
Q ss_pred EEEcccCcCCCeeEEEEEEecC-cce----EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCC
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLV-GFA----EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~-g~~----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 184 (808)
|.|.+++.+|+|.|.|.+.|.. |.. ...+.|.|.......... ..+ .....++
T Consensus 103 L~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~---------------------~~~-~~~~~~~ 160 (291)
T 2gki_A 103 MELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGG---------------------GGS-GGGGSDL 160 (291)
T ss_dssp EEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC--------------------------------------CC
T ss_pred EEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCcccccc---------------------ccC-CCCCccc
Confidence 9999999999999999999874 211 123466665310000000 000 0001245
Q ss_pred eEEeecCceeecCCCeEEEEEEEeecCCCCe------EEEEeeC--CEEc---c---------CCCceEEEecCceEEEE
Q psy2145 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTM------KVEWFHN--NVPI---K---------SGSRFTETNNFGFVALD 244 (808)
Q Consensus 185 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~------~v~W~~~--g~~l---~---------~~~~~~~~~~~~~~~L~ 244 (808)
.+...+..+.+.+|++++|.|.+ .+.+.+ .+.|||+ |..+ . ...++.........+|.
T Consensus 161 ~v~~~p~~~~v~~G~~v~L~C~~--~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 238 (291)
T 2gki_A 161 VMSQSPSSLAVSAGEKVTMSCKS--SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLT 238 (291)
T ss_dssp CEECSCSEEEEETTSCEEEEEEE--SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred eEEcCCCEEEEcCCCcEEEEEEc--CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEE
Confidence 56666777889999999999999 466654 8999995 3321 1 13466655555566899
Q ss_pred EccCCCCCcEEEEEEEEeCceeEEE-EEEEEEeeC
Q psy2145 245 IMQCLPEDSGVYTCRAVNALGQAVT-SGNLLVHSK 278 (808)
Q Consensus 245 I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~ 278 (808)
|.+++.+|+|.|+|.|.|.....-. -..|.|+..
T Consensus 239 I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~ 273 (291)
T 2gki_A 239 ISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHH 273 (291)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred ECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence 9999999999999999996443322 346666653
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=175.62 Aligned_cols=179 Identities=17% Similarity=0.244 Sum_probs=124.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe----------------CCEEeecc---CcEEEEe-eCCeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK----------------NGRPVTIG---HRFRPIH-DFGYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~----------------~g~~l~~~---~r~~~~~-~~~~~~L~I 112 (808)
...|..+ .+.+|++++|.|.+.+ .+.+.|.||| ++..+..+ .|+.+.. ..+.++|.|
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I 81 (246)
T 4dzb_B 5 SQHPSWV-ISKSGTSVKIECRSLD--FQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 81 (246)
T ss_dssp EEECSEE-EEETTSCEEEEEEESS--SCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred EECCcEE-EEeCCCcEEEEeEecC--CCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence 3446666 8999999999999984 6888999999 44333332 5777654 356779999
Q ss_pred cccCcCCCeeEEEEEEecCc----ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE-
Q psy2145 113 IDTIPEDSGTYTCRAVNLVG----FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT- 187 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~- 187 (808)
.+++.+|+|.|+|.|.|..+ .....+.|.|..... ...+|.+.
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~P~i~~ 129 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK--------------------------------NVFPPEVAV 129 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG--------------------------------GCBCCEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC--------------------------------cccCCceEe
Confidence 99999999999999987643 122345666653110 12355554
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-------cCce----EEEEEccCCCCC-cEE
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-------NFGF----VALDIMQCLPED-SGV 255 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-------~~~~----~~L~I~~~~~~D-~G~ 255 (808)
..+....+.+|+.++|.|.+.+...+...|.|+|||..|..+....... .++. ..|.|.....+| .|.
T Consensus 130 ~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~ 209 (246)
T 4dzb_B 130 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH 209 (246)
T ss_dssp ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCE
T ss_pred ecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCe
Confidence 3455566778999999999964222234999999999987543221100 1232 248899888888 999
Q ss_pred EEEEEEeCcee
Q psy2145 256 YTCRAVNALGQ 266 (808)
Q Consensus 256 Y~C~a~n~~g~ 266 (808)
|+|+|.|....
T Consensus 210 YtC~v~~~~~~ 220 (246)
T 4dzb_B 210 FRCQVQFYGLS 220 (246)
T ss_dssp EEEEEEECCBC
T ss_pred EEEEEEecCCC
Confidence 99999996543
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=166.96 Aligned_cols=169 Identities=15% Similarity=0.271 Sum_probs=118.9
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--Ee---c--------------CCCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KP---L--------------EDSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~---l--------------~~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|||.. .. + ....|+.+..+ .+..+|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (220)
T 2fbj_H 11 LVQPGGSLKLSCAA--SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (220)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred EecCCCcEEEEEEe--cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence 68899999999999 5655 6789999852 21 1 01357777654 4567899999999
Q ss_pred CCCEEEEEEEEeCCee---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccc
Q psy2145 572 EDEGIYICKATNALGE---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEI 648 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 648 (808)
+|+|.|.|.+.|..+. ....+.|.|...+. .+|.+.... ...+
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~v~~~~--~~~~ 134 (220)
T 2fbj_H 89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESA--------------------------------RNPTIYPLT--LPPA 134 (220)
T ss_dssp GGCEEEEEEEEETTTEEEEECCCEEEEECSSCC--------------------------------BCCEEEEEC--CCSS
T ss_pred hhCEEEEEEEeccccccceecCCEEEEecCCCC--------------------------------CCCEEEEee--cccc
Confidence 9999999999998653 12235666664211 236555433 2357
Q ss_pred cCCceEEEEEEEeeCCC-CC--eEEEEEECCEEccC-CCcEEEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 649 MEGQSAHYDCRVVPVGD-PT--MRFEWFVNGVELKM-GSRFHVQHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~-P~--p~i~W~~~g~~l~~-~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
.+|+.++|.|.+ .|. |. +.|.|++||..+.. ........++. .+.|.|.....+|+|.|+|.|.|..|...
T Consensus 135 ~~g~~v~L~C~~--~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 135 LSSDPVIIGCLI--HDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp SCCSSEEEEEEE--EEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred cCCCcEEEEEEE--EeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 889999999999 465 76 89999999987621 00101111111 13699999999999999999999999765
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=171.17 Aligned_cols=176 Identities=13% Similarity=0.158 Sum_probs=120.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeCC--EEee-----------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKNG--RPVT-----------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~g--~~l~-----------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++|+|.|.+.+ .+ .+.|.|||++ ..+. ...|+.+..+ .+..+
T Consensus 4 l~qp~~~-~v~~G~~v~L~C~~~~--~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (225)
T 1op3_H 4 LVESGGG-LVKAGGSLILSCGVSN--FRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY 80 (225)
T ss_dssp EEEECCE-EEETTCCEEEEEEEES--SCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEE
T ss_pred EEcCCCe-EecCCCCEEEEEEecC--cccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEE
Confidence 4456677 8999999999999984 44 6789999842 2111 1357777655 45679
Q ss_pred EEEcccCcCCCeeEEEEEEecCc-----c---eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccC
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVG-----F---AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTT 181 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g-----~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (808)
|.|.+++.+|+|.|.|.+.|..| . ....+.|.|.... .
T Consensus 81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------~ 126 (225)
T 1op3_H 81 LQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS----------------------------------T 126 (225)
T ss_dssp EEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS----------------------------------C
T ss_pred EEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC----------------------------------C
Confidence 99999999999999999999765 2 1134577775321 2
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc----eEEEEEccCCCCCcEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG----FVALDIMQCLPEDSGVY 256 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y 256 (808)
.+|.+........+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........++ ...|.|.++..+| |.|
T Consensus 127 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y 204 (225)
T 1op3_H 127 KGPSVFPLAPSSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY 204 (225)
T ss_dssp BCCEEEEECCCTTCCCCCEEEEEEEEEE-EBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCC
T ss_pred cCCeEEEecccccccCCCcEEEEEEEEe-EECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcE
Confidence 3455544332224678999999999963 33655 999999997642110000111222 1258999998889 999
Q ss_pred EEEEEeCceeE
Q psy2145 257 TCRAVNALGQA 267 (808)
Q Consensus 257 ~C~a~n~~g~~ 267 (808)
+|.|.|..+..
T Consensus 205 ~C~a~n~~~~~ 215 (225)
T 1op3_H 205 ICNVNHKPSNT 215 (225)
T ss_dssp CEEEEEGGGTE
T ss_pred EEEEEcCCCCc
Confidence 99999976543
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=169.69 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=131.8
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--EE---c----------cCCCceEEE--ecCceEEEEEc
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VP---I----------KSGSRFTET--NNFGFVALDIM 246 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~~---l----------~~~~~~~~~--~~~~~~~L~I~ 246 (808)
..+...+..+.+.+|++|+|.|.+ .+.|.+.+.|||.. .. + ....++... ...+..+|.|.
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~ 81 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKY--SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKA 81 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEE--ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEES
T ss_pred cEEEecCceEEecCCCeEEEEEEe--CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEEC
Confidence 456667778899999999999999 46688999999832 11 1 113345542 34456789999
Q ss_pred cCCCCCcEEEEEEEEeCcee----EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCC
Q psy2145 247 QCLPEDSGVYTCRAVNALGQ----AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPM 322 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~g~----~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~ 322 (808)
+++.+|+|.|+|.|.|..+. ....+.|.|.......... .+ ..........+|.+...+
T Consensus 82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~---~~--------------~~~~~~~~~~~~~v~~~p 144 (256)
T 3tf7_C 82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGG---GS--------------GGGGSGGGGSEAAVTQSP 144 (256)
T ss_dssp SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC--------------------------------------CCEEESC
T ss_pred CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCC---Cc--------------CcccCCCCcCccEEEecC
Confidence 99999999999999997542 2234567776410000000 00 000000012356677777
Q ss_pred CceEeecCCeEEEEEEEeecCCCccEEEEEECC--Ee---cc------------CCCcEEEEe-eCcEEEEEEccCCCCC
Q psy2145 323 RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNG--VP---IQ------------ASNRVSTMH-DFGYVALNFKYTYPED 384 (808)
Q Consensus 323 ~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g--~~---l~------------~~~~~~~~~-~~~~~~L~I~~v~~~d 384 (808)
....+.+|+.++|.|.+ .+. .+.+.|+|.+ .. +. ...++.... .....+|.|.++..+|
T Consensus 145 ~~~~v~~G~~v~L~C~~--~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D 221 (256)
T 3tf7_C 145 RNKVTVTGENVTLSCRQ--TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQ 221 (256)
T ss_dssp SEEEEETTCCEEECEEE--CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGG
T ss_pred CEEEEeCCCcEEEEEEc--CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHH
Confidence 77888899999999998 555 6799999832 11 10 122333322 2234579999999999
Q ss_pred CeEEEEEEEcCCcceEE--EEEEEEEec
Q psy2145 385 SGTYTCRAVNELGEAVT--SSTLFVESK 410 (808)
Q Consensus 385 ~G~Y~C~a~n~~g~~~~--~~~l~V~~~ 410 (808)
+|.|+|.|.|..|...- -+.|.|...
T Consensus 222 sG~Y~C~a~n~~g~~~fG~gt~l~v~~~ 249 (256)
T 3tf7_C 222 TSLYFCASSDAPGQLYFGEGSKLTVLEL 249 (256)
T ss_dssp CEEEEEEEEEETTEEEECCCEEEEEECG
T ss_pred CEEEEEEecCCCCccEECCCeEEEEEcc
Confidence 99999999998775532 266777643
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=176.24 Aligned_cols=204 Identities=14% Similarity=0.159 Sum_probs=119.0
Q ss_pred cccccccceeeeccCCCchhhhhhhccCCccceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---e
Q psy2145 19 SKKETSYHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---V 93 (808)
Q Consensus 19 ~~~ed~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l 93 (808)
.+..|.+.|.|.+.+..+...... ...+...|..+ .+.+|++++|.|.+. .+.+.|.||| .|.. +
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~------~~~v~~~p~~v-~v~~G~~v~L~C~~~---~~~~~v~W~k~~~~~~~~~~ 72 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGG------GMKVIQTPRYL-VKGQGQKAKMRCIPE---KGHPVVFWYQQNKNNEFKFL 72 (270)
T ss_dssp -------------------------------CCCEEECSEE-EEETTSCEEEEEECC---TTCCEEEEEEECTTCCEEEE
T ss_pred chhhhHHHHHHHHhccCCcccccc------ceeEEeCCCeE-EEcCCCCEEEEEEec---CCCceEEEEEECCCCCcEEE
Confidence 467899999999988755433221 12334556667 899999999999986 3667999998 2211 1
Q ss_pred ---------ecc---C-cEEEEe-eCCeEEEEEcccCcCCCeeEEEEEEecCc----ceEEEEEEEEecCCCcccccccc
Q psy2145 94 ---------TIG---H-RFRPIH-DFGYVALDIIDTIPEDSGTYTCRAVNLVG----FAEVQATLQCRGSAGILTSTQNE 155 (808)
Q Consensus 94 ---------~~~---~-r~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~ 155 (808)
..+ . |+.+.. ..+..+|.|.+++.+|+|.|.|.+.+..+ .....+.|.|.....
T Consensus 73 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-------- 144 (270)
T 3qib_D 73 INFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLK-------- 144 (270)
T ss_dssp EEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCST--------
T ss_pred EEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccc--------
Confidence 111 1 666553 34567999999999999999999996422 222345666653211
Q ss_pred ccceeeeeeccccccccccccccccCCCCeEEe-ecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceE
Q psy2145 156 TGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT-SLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFT 233 (808)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~ 233 (808)
...+|.+.. .+....+.+|+.++|.|.+.+ ..|.+ .|.|+|||.++..+....
T Consensus 145 ------------------------~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~ 199 (270)
T 3qib_D 145 ------------------------NVFPPEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTD 199 (270)
T ss_dssp ------------------------TCBCCEEEEEECCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEEC
T ss_pred ------------------------cccCCceEEECCCccccccCCceEEEEEecc-eeCCCeEEEEEECCEECCCCcccc
Confidence 123565443 445556677999999999963 24544 899999999987543211
Q ss_pred E-------EecCce----EEEEEccCCCCC-cEEEEEEEEeCce
Q psy2145 234 E-------TNNFGF----VALDIMQCLPED-SGVYTCRAVNALG 265 (808)
Q Consensus 234 ~-------~~~~~~----~~L~I~~~~~~D-~G~Y~C~a~n~~g 265 (808)
. ...++. ..|.|.....+| .|.|+|+|.|...
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l 243 (270)
T 3qib_D 200 PQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 243 (270)
T ss_dssp SSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred cccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence 0 001221 257888887788 9999999998644
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=167.42 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=117.5
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCC-CC-CceEEEEeCCEEeeccCc-EEEEeeC----CeEEEEEcccCcCCCeeEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVT-DS-NLKVEWFKNGRPVTIGHR-FRPIHDF----GYVALDIIDTIPEDSGTYT 124 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~-~p-~~~v~W~~~g~~l~~~~r-~~~~~~~----~~~~L~I~~~~~~D~G~Y~ 124 (808)
++..|.....+.+|++++|.|.+.+.. .| .+.|.|||++..+..... +.....+ ...+|.|.+++.+|+|.|+
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 84 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK 84 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence 345555441389999999999999632 13 459999999987753210 0000111 1247999999999999999
Q ss_pred EEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEE
Q psy2145 125 CRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFE 204 (808)
Q Consensus 125 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~ 204 (808)
|.|.|..+.......+.+.. ....+|.+...+......+|+.++|.
T Consensus 85 C~a~~~~~~~~~~~~v~~~~----------------------------------~~~~~P~v~~~~~~~~~~~g~~~~L~ 130 (207)
T 2vol_A 85 CRVNSAAFPAPIEKTISKTK----------------------------------GRPKAPQVYTLPPPKEQMAKDKVSLT 130 (207)
T ss_dssp EEEECTTCSSCEEEEECCCC----------------------------------CCCBCCEEEEECCCTGGGSSSEEEEE
T ss_pred EEEEccCCCCceEEEeccCC----------------------------------CCCcCCeEEEeCCCHHHhcCCceEEE
Confidence 99999887543323332100 11457777766655444579999999
Q ss_pred EEEeecCCCC-eEEEEeeCCEEccCCCceE-EEecCce----EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 205 CRLIPVSDNT-MKVEWFHNNVPIKSGSRFT-ETNNFGF----VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 205 C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~-~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|.+.+ ..|. +.|.|+|||.++....... ....+|. ..|.|.....+|.|.|+|.|.|...
T Consensus 131 C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 131 CMITD-FFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EEEEE-EBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred EEEee-EECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 99964 2444 5999999999885432111 1123332 2366776667789999999999653
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=171.01 Aligned_cols=180 Identities=16% Similarity=0.226 Sum_probs=120.9
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC-----------------CCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE-----------------DSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|||++ ..+. ...|+.+..+ .+..+|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (227)
T 1mju_H 11 LVKPGASVKLSCKA--SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS 88 (227)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEcCCCCEEEEEEe--cCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCc
Confidence 58899999999999 6666 6889999863 2210 1357776654 3567899999999
Q ss_pred CCCEEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 572 EDEGIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
+|+|.|.|.+.|..+.. ...+.|.|...+. .+|.+...... ..+.+
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~v~~~~~~-~~~~~ 135 (227)
T 1mju_H 89 DDSAVYYCANKLGWFPYWGQGTLVTVSAAKT--------------------------------TAPSVYPLAPV-CGDTS 135 (227)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEECSSCC--------------------------------BCCEEEEECCC-C----
T ss_pred ccCEEEEEEECCCCceEEcCcEEEEEcCCCC--------------------------------CCCEEEEecCC-ccccC
Confidence 99999999999974321 1234666654210 13544433222 24678
Q ss_pred CceEEEEEEEeeCCC-CCe-EEEEEECCEEccC--CCcEEEEEeC---CEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 651 GQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKM--GSRFHVQHDF---GYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 651 G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~--~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
|+.++|.|.+ .|. |.+ .|.|++||..+.. ..... ..+ ..+.|.|..+..+| |.|+|.|.|..+.....
T Consensus 136 g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 210 (227)
T 1mju_H 136 GSSVTLGCLV--KGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD 210 (227)
T ss_dssp --CEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCcEEEEEEe--ecEeCCCeEEEEecCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceE
Confidence 9999999999 564 776 9999999987531 11111 111 13479999999888 99999999999888888
Q ss_pred EEEEEEeCCCc
Q psy2145 724 TSLKVKSKSDI 734 (808)
Q Consensus 724 ~~l~V~~~p~~ 734 (808)
..+.+.++|.-
T Consensus 211 ~~~~~~~~p~~ 221 (227)
T 1mju_H 211 KKIEPRGPTIK 221 (227)
T ss_dssp EECCCCCC---
T ss_pred EEeCCCCCCCC
Confidence 88887777643
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=168.62 Aligned_cols=169 Identities=21% Similarity=0.381 Sum_probs=120.4
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--Ee---c---C-------------CCCCeEEEee--CcEEEEEECCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KP---L---E-------------DSSRITTKHD--FGYVAMDLSHV 569 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~---l---~-------------~~~~~~~~~~--~~~~~L~I~~v 569 (808)
.+.+|++++|.|.+ .+.| .+.|.|+|++ .. + . ...|+.+..+ .+.++|.|.++
T Consensus 11 ~~~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (220)
T 1pz5_B 11 LVQPGGSMKLSCVA--SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL 88 (220)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred EEcCCCeEEEEEEE--cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence 58899999999999 5665 7889999853 21 1 0 0357776653 35668999999
Q ss_pred CCCCCEEEEEEEEeCCeeE-E--EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 570 RAEDEGIYICKATNALGEA-V--TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~G~~-~--~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
+.+|+|.|.|.+.|..|.. . ..+.|.|...+ ..+|.+...... .
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------~~~P~i~~~~~~-~ 135 (220)
T 1pz5_B 89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT--------------------------------TTAPSVYPLVPG-C 135 (220)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC--------------------------------CBCCEEEEECCC-S
T ss_pred CHHHCEEEEEEEecCCcccceECCCEEEEEccCC--------------------------------CCCCeEEEcccc-c
Confidence 9999999999999986432 1 33566665321 123655544332 3
Q ss_pred cccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEcc---C-----CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 647 EIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELK---M-----GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~---~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.+.+|+.++|.|.+ .|. |.| .|.|+++|..+. . ...|.+ .+.|.|..+..+| |.|+|.|.|.
T Consensus 136 ~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~~-g~Y~C~a~n~ 207 (220)
T 1pz5_B 136 SDTSGSSVTLGCLV--KGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSL-----SSLVTVPSSTWPS-QTVICNVAHP 207 (220)
T ss_dssp CCSCSSSEEEEEEE--EEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEE-----EEEEEECGGGTTT-SCCEEEEEEG
T ss_pred ccCCCCcEEEEEEE--EEEeCCCeEEEEecCCcccceEEcCCcccCCeEEE-----EEEEEEcchhcCC-ceEEEEEEEC
Confidence 46789999999999 576 888 999999987411 0 122222 3479999988866 9999999999
Q ss_pred CcceEEEEEE
Q psy2145 717 AGEAVSSTSL 726 (808)
Q Consensus 717 ~G~~~~s~~l 726 (808)
.|....++.+
T Consensus 208 ~~~~~~~~~~ 217 (220)
T 1pz5_B 208 ASKVDLIKEI 217 (220)
T ss_dssp GGTEEEEEEC
T ss_pred CccEeeeecC
Confidence 9987666543
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=164.23 Aligned_cols=168 Identities=17% Similarity=0.331 Sum_probs=119.2
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--Ee---c--------------CCCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KP---L--------------EDSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~---l--------------~~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.+ .+.|.|||.+ .. + ....|+.+..+ .+.++|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 11 VVQPGKSLRLSCAA--SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEcCCCcEEEEEEe--cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 68999999999999 5655 4789999853 21 1 01357776654 2467899999999
Q ss_pred CCCEEEEEEEEeCCe----e--EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC
Q psy2145 572 EDEGIYICKATNALG----E--AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G----~--~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~ 645 (808)
+|+|.|.|.+.|..| . ....+.|.|...+. .+|.+......
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~i~~~~~~- 135 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSA--------------------------------SAPTLFPLVSC- 135 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCC--------------------------------BCCEEEEEECT-
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccCCC--------------------------------CCCEEEEecCC-
Confidence 999999999999753 1 11234666653111 23555433222
Q ss_pred ccccCCceEEEEEEEeeCCC-CCe-EEEEEE-CCEEccC---------CCcEEEEEeCCEEEEEEccCCC--CCcEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGD-PTM-RFEWFV-NGVELKM---------GSRFHVQHDFGYVTLDITKCVP--ADSGVYMC 711 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~-~g~~l~~---------~~~~~~~~~~~~~~L~I~~v~~--~D~G~Y~C 711 (808)
..+.+|+.++|.|.+ .|. |.| .|.|++ ||..|.. +..|.+ .+.|.|..... +|.|.|+|
T Consensus 136 ~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~~~d~g~y~C 208 (223)
T 1dee_B 136 ENSNPSSTVAVGCLA--QDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAA-----TSQVLLPSKDVAQGTNEHVVC 208 (223)
T ss_dssp TCCCSSSEEEEEEEE--EEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEE-----EEEEEEECTTTTSTTCCEEEE
T ss_pred cccCCCCcEEEEEEE--EEEeCCCeEEEeEccCCCccceeEECCccccCCeEEE-----EEEEEEcHHHhccCCCCEEEE
Confidence 246789999999999 565 777 999999 9998854 112221 24688988776 88999999
Q ss_pred EEEeCCcceEEEE
Q psy2145 712 KAINRAGEAVSST 724 (808)
Q Consensus 712 ~A~N~~G~~~~s~ 724 (808)
.|.|..|......
T Consensus 209 ~v~n~~~~~~~~~ 221 (223)
T 1dee_B 209 KVQHPNGNKEKDV 221 (223)
T ss_dssp EEECTTCCEEEEE
T ss_pred EEEeCCCCCcccc
Confidence 9999999876654
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-18 Score=171.22 Aligned_cols=188 Identities=16% Similarity=0.214 Sum_probs=122.5
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCC------CceEEEEeC--CEE---ee---------ccCcEEEEeeCCeEEEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDS------NLKVEWFKN--GRP---VT---------IGHRFRPIHDFGYVALD 111 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p------~~~v~W~~~--g~~---l~---------~~~r~~~~~~~~~~~L~ 111 (808)
+...|..+ .+.+|++|+|.|.+.+ .| .+.|.|||+ |.. |. ...|+.+..+.+..+|.
T Consensus 8 v~q~p~~v-~v~~G~~v~L~C~~~~--~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 8 LTQTPSSL-PVSVGEKVTMTCKSSQ--TLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp EEEECSEE-EEETTCCEEEEEEESS--CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred eEecCCeE-EecCCCcEEEEeEcCC--cccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 34557777 8999999999999984 45 678999994 322 21 14678777667778999
Q ss_pred EcccCcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeec
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL 190 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 190 (808)
|.+++.+|+|.|.|.|.|..+.. ...+.|.|...+..-. .. ..+. ..... ..++.....+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~--------------~~---~~~~-~~~~~-~~~~~~~~~~ 145 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSG--------------GG---GSGG-GGSGG-GGSEVQLQQS 145 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC--------------------------------------CCEEEEC
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccc--------------cc---cccc-ccccc-ccCcEEEeCC
Confidence 99999999999999999875432 2345677764321000 00 0000 00000 0122222333
Q ss_pred CceeecCCCeEEEEEEEeecCCC--CeEEEEeeCC--EE---cc----C----------CCceEEEe--cCceEEEEEcc
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNN--VP---IK----S----------GSRFTETN--NFGFVALDIMQ 247 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~g--~~---l~----~----------~~~~~~~~--~~~~~~L~I~~ 247 (808)
....+.+|++|+|.|.+. +.+ .+.|.|||++ .. +. . ..++.+.. ..+..+|.|.+
T Consensus 146 ~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 223 (264)
T 2gjj_A 146 GPEVVKTGASVKISCKAS--GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNS 223 (264)
T ss_dssp CCEEECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCEEEcCCCcEEEEEEEe--CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECc
Confidence 445789999999999994 554 3799999963 21 11 0 23444432 33566899999
Q ss_pred CCCCCcEEEEEEEEeC
Q psy2145 248 CLPEDSGVYTCRAVNA 263 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~ 263 (808)
++.+|+|.|.|.|.|.
T Consensus 224 v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 224 LTSEDSADYYCVRSGN 239 (264)
T ss_dssp CCGGGCEEEEEEEECS
T ss_pred CCcccCEEEEEEEecC
Confidence 9999999999999995
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=168.67 Aligned_cols=180 Identities=14% Similarity=0.188 Sum_probs=120.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCC----ceEEEEeC--CEE---ee-------------ccCcEEEEee--CCeE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSN----LKVEWFKN--GRP---VT-------------IGHRFRPIHD--FGYV 108 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~----~~v~W~~~--g~~---l~-------------~~~r~~~~~~--~~~~ 108 (808)
+..|..+ .+.+|++|+|.|.+.+ .|. +.|.|||+ |.. |. ...|+.+..+ .+..
T Consensus 4 v~qp~~~-~v~~G~~v~L~C~~~~--~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 80 (228)
T 3bae_H 4 LKESGPG-LLKPSQTLSLTCSFSG--FSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMV 80 (228)
T ss_dssp EEEECCS-EECTTCCEEEEEEEES--SCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEE
T ss_pred EeCCCce-eecCCCeEEEEEEEeC--cccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeE
Confidence 3446777 8999999999999984 453 78999984 322 11 1357777654 3567
Q ss_pred EEEEcccCcCCCeeEEEEEEecCc------c---eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccc
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVG------F---AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g------~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (808)
+|.|.+++.+|+|.|.|.+.|..| . ....+.|.|....
T Consensus 81 ~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~--------------------------------- 127 (228)
T 3bae_H 81 FMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK--------------------------------- 127 (228)
T ss_dssp EEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC---------------------------------
T ss_pred EEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC---------------------------------
Confidence 999999999999999999998764 1 1123567665311
Q ss_pred cCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEE
Q psy2145 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGV 255 (808)
Q Consensus 180 ~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~ 255 (808)
..+|.+...+....+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........+. ...|.|.++..+| |.
T Consensus 128 -~~~P~i~~~~~~~~~~~g~~~~l~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~ 204 (228)
T 3bae_H 128 -TTAPSVYPLAPVCGDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ES 204 (228)
T ss_dssp -CBCCEEEEECC-----CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SC
T ss_pred -CCCCEEEEecccccccCCCCEEEEEEEcc-EeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-Cc
Confidence 24566655443445678999999999953 33665 999999987642111111111111 2358999988866 99
Q ss_pred EEEEEEeCceeEEEEE
Q psy2145 256 YTCRAVNALGQAVTSG 271 (808)
Q Consensus 256 Y~C~a~n~~g~~~~~~ 271 (808)
|+|.|.|..|......
T Consensus 205 YtC~~~n~~~~~~~~~ 220 (228)
T 3bae_H 205 ITCNVAHPASSTKVDK 220 (228)
T ss_dssp CEEEEEEGGGTEEEEE
T ss_pred EEEEEEECCCCCCEEE
Confidence 9999999888655443
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=152.27 Aligned_cols=239 Identities=15% Similarity=0.223 Sum_probs=164.0
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCC---CceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDS---NLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.|... .+..|+.++|+|.+.+ +.| ...++|+|||.++.... ..|.|..+...|+|.|+|.+.+..
T Consensus 8 ~P~~~-~i~~GdsVTLTatVaG-GkP~pspyTYqWyKDG~~IsGaT----------~tLti~s~t~sdSG~YqCvVTDa~ 75 (304)
T 3shs_A 8 QSNKR-CFLAGDGFTLTATVAG-DEPLPSNLTYTWTKDDQPHENNT----------ATLTVADATSENAGSYKVTVQDTD 75 (304)
T ss_dssp EESCS-SBCTTCCEEEEEEEEE-SSSCCCCEEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCCc-cccCCCCEEEEEEecC-CCCCCCCceEEEEECCccccCCc----------ceEEeeeccccCCeEEEEEEEECC
Confidence 35555 7899999999999987 677 66899999998865321 169999999999999999999998
Q ss_pred cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE-EeecCceeecCCCeEEEEEEE--e
Q psy2145 132 GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF-TTSLKNCEIKEGQRAHFECRL--I 208 (808)
Q Consensus 132 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~~~~v~~G~~v~L~C~~--~ 208 (808)
|....+..+.|.... .+.+ ...|.+..+..|..+.|.+.+ .
T Consensus 76 Gcs~tSs~VtVT~~a------------------------------------~l~i~it~P~s~~vssg~sVtL~aTVt~S 119 (304)
T 3shs_A 76 TMTSVESEVFLMEEA------------------------------------ELIVNITEPQHFYVSSQTDVELHATVKFS 119 (304)
T ss_dssp TCCEEECCCEEECBC------------------------------------CEEEEESSCSEEEECSSCCEEEEEEEEET
T ss_pred CCeeeeeeEEEeccC------------------------------------ceeEEecCCCceeccCCCeEEEEEEEecc
Confidence 887766666665321 1122 223455666778899999988 4
Q ss_pred ecCCC-----CeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEE--EEEEEEeeCCcc
Q psy2145 209 PVSDN-----TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVT--SGNLLVHSKKSI 281 (808)
Q Consensus 209 ~~~~p-----~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~--~~~l~V~~~~~i 281 (808)
+ |.| ..+++|+|||..|.... .|.+......++|.|+|++.|..+.... ++.+.|-.
T Consensus 120 G-GtppA~~~~yTYQWyKngt~IsgAq-----------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~---- 183 (304)
T 3shs_A 120 G-GKTPADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT---- 183 (304)
T ss_dssp T-SCCSSTTCCCEEEEEETTEEEESSS-----------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE----
T ss_pred C-CCCcccCCCceeEEeeCCeEccCcc-----------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc----
Confidence 2 344 57999999999886433 5778888899999999999998774333 34444322
Q ss_pred cccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEee------cCCCc--cEEEEEE
Q psy2145 282 QTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIP------VGDSK--LKVTWLR 353 (808)
Q Consensus 282 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~------~g~p~--~~v~W~~ 353 (808)
.++-........+..|+.+.|.-.+.. .|.|. .++.||.
T Consensus 184 ---------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (304)
T 3shs_A 184 ---------------------------------MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230 (304)
T ss_dssp ---------------------------------EEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEE
T ss_pred ---------------------------------cccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEE
Confidence 111111223456777888887665521 24454 4577886
Q ss_pred --CCEecc----C-----CCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEE
Q psy2145 354 --NGVPIQ----A-----SNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAV 393 (808)
Q Consensus 354 --~g~~l~----~-----~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 393 (808)
.|+.-+ . -..+.+..++ .|.-.....+|...|.|.|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 3shs_A 231 QREGQLSPTLIGSEVGEALEGFSITPDG---HLFKESATYDDTAKFWCVAK 278 (304)
T ss_dssp ECTTCCSCEEEESSSEECGGGEEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred eecCccCchhhhhhhhhhhccceeCCCc---ceeecccccccchheeeHHH
Confidence 333211 0 1345555554 37777888899999999985
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=187.48 Aligned_cols=352 Identities=14% Similarity=0.147 Sum_probs=215.7
Q ss_pred cCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCC-CcEEEEEEEEeCceeEEEEEEEE
Q psy2145 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPE-DSGVYTCRAVNALGQAVTSGNLL 274 (808)
Q Consensus 196 ~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~~g~~~~~~~l~ 274 (808)
..+..+.|.|.+ .|.|.+.+.|.|+|..+..-.+ ..|.|..+... ..+.|.|.+.|..|..... .+.
T Consensus 89 ~~~g~l~v~c~~--~g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~ 156 (731)
T 2v5y_A 89 SPPGLLNVYVKV--NNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVK 156 (731)
T ss_dssp SCSEEEEEEEEE--TTCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBE
T ss_pred CCcceEEEEEec--CCCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEE
Confidence 445689999999 7899999999999987643211 14666655333 3589999988888865532 222
Q ss_pred EeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCCccEEE-EE-
Q psy2145 275 VHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVT-WL- 352 (808)
Q Consensus 275 V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~-W~- 352 (808)
+... ....+|.|. .+.+..+.+|+.+.|.|.+ .|.|.+.+. |+
T Consensus 157 ~~~~--------------------------------~~~~~p~~~-~~~~~~v~~G~~v~l~C~~--~g~P~p~i~~W~~ 201 (731)
T 2v5y_A 157 VLGH--------------------------------PCTRTPHFL-RIQNVEVNAGQFATFQCSA--IGRTVAGDRLWLQ 201 (731)
T ss_dssp EESS--------------------------------CCSSSCEEC-CCCCEEEETTSCEEEEEEE--ESCCCTTCEEEEE
T ss_pred eeec--------------------------------ccccccccc-cccceEEeCCCcEEEEEEe--CCCCCCceeEEEe
Confidence 2211 123477777 4557889999999999999 799999988 88
Q ss_pred -ECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecccccccccchHHHhhhhccc
Q psy2145 353 -RNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE-AVTSSTLFVESKASLQLDTQNEAALQKIQNLE 430 (808)
Q Consensus 353 -~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 430 (808)
+||..+.......+.......+|.|.++...|+|.|+|.|.|..|. ....+.|.|..+|..+
T Consensus 202 ~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~---------------- 265 (731)
T 2v5y_A 202 GIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPI---------------- 265 (731)
T ss_dssp ESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBS----------------
T ss_pred cCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCC----------------
Confidence 7888775433222222223458999999999999999999999998 5556888887654322
Q ss_pred cccccccccceeeeeccCCeeEEecCCCceeecCCceeEecccCCchhhhhcccccCCCCCCCCcCCCCccCCCeeeecC
Q psy2145 431 DTSRFKRKEEEEVEVTQQPSFTVQLNGPTELVEGEGTIITDTQHPKGLEKIRKLEDTEPHKRPEVDDNATKQRPVFTKPL 510 (808)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~f~~~~ 510 (808)
.+ |...
T Consensus 266 ----------------~~-------------------------------------------------------p~~~--- 271 (731)
T 2v5y_A 266 ----------------AP-------------------------------------------------------PQLA--- 271 (731)
T ss_dssp ----------------SC-------------------------------------------------------CEEE---
T ss_pred ----------------CC-------------------------------------------------------ccee---
Confidence 01 1111
Q ss_pred CCcccccCCCceEEEEEEee-CC-CCCc--EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE--eC
Q psy2145 511 QNIDAVEEGKNAHFSCRLIP-VG-DPTL--KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT--NA 584 (808)
Q Consensus 511 ~~~~~v~~G~~v~l~C~v~~-~g-~P~~--~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~--N~ 584 (808)
......+.|.|...+ .| .|.. .|.|.+.+.. ..... ......+.|.++...+.+.|+|.|. |.
T Consensus 272 -----~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~-----~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~ 340 (731)
T 2v5y_A 272 -----SVGATYLWIQLNANSINGDGPIVAREVEYCTASGS-----WNDRQ-PVDSTSYKIGHLDPDTEYEISVLLTRPGE 340 (731)
T ss_dssp -----EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS-----CEEEE-ECCSSEEEECSCCTTCEEEEEEEEECSST
T ss_pred -----ccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC-----ceEEe-ccCcceEEEeCCCCCCEEEEEEEEEecCC
Confidence 112346777775410 11 1111 4667654321 11111 1112379999999999999999999 99
Q ss_pred CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCC
Q psy2145 585 LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVG 664 (808)
Q Consensus 585 ~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g 664 (808)
.|....+..+.+...... ...+|..... .......+.|.+.. .+
T Consensus 341 ~G~s~~S~~~~~~t~~~~-----------------------------p~~~P~~~~~-----~~~~~~sv~l~W~~--p~ 384 (731)
T 2v5y_A 341 GGTGSPGPALRTRTKCAD-----------------------------PMRGPRKLEV-----VEVKSRQITIRWEP--FG 384 (731)
T ss_dssp TCSCCBCCCEEEECCCCC-----------------------------CSCCCEEEEE-----EEECSSCEEEEEEC--CC
T ss_pred CccccCCCcEEeeecCCC-----------------------------CCCCCceeEE-----EeccCCeEEEEEEC--CC
Confidence 997765544444432110 0012332211 11224456676654 11
Q ss_pred C-----C--CeEEEEEECCEEccCCCcE---EEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEEeCCCc
Q psy2145 665 D-----P--TMRFEWFVNGVELKMGSRF---HVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 665 ~-----P--~p~i~W~~~g~~l~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
. + ...|.|...+.... ... .+........+.|.++.+.....|++.|.|..|... +..+.+......
T Consensus 385 ~~~~~~~~~~y~v~y~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~ 461 (731)
T 2v5y_A 385 YNVTRCHSYNLTVHYCYQVGGQE--QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDL 461 (731)
T ss_dssp HHHHCSSSCEEEEEEEEESSSSE--EEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCC
T ss_pred cccccceeeeEEEEEEEccCCCC--ccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCC
Confidence 1 1 23455554321000 000 001112234789999999999999999999999864 666777655443
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=169.68 Aligned_cols=178 Identities=19% Similarity=0.283 Sum_probs=120.8
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCC-----CceEEEEeCC--E---Eee---------ccCcEEEEeeCCeEEEEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDS-----NLKVEWFKNG--R---PVT---------IGHRFRPIHDFGYVALDI 112 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p-----~~~v~W~~~g--~---~l~---------~~~r~~~~~~~~~~~L~I 112 (808)
+...|..+ .+.+|++++|.|.+.+ .+ .+.|.|||++ . .+. ...|+.+..+.+..+|.|
T Consensus 18 v~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 18 MTQTPLSL-PVSLGDQASISCRSSQ--SLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp EEEECSEE-CCCTTCCEEEEEEESS--CCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred EEeeCCeE-EecCCCCEEEEeEecC--CcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 34457777 8999999999999984 44 5789999842 2 121 246787776777789999
Q ss_pred cccCcCCCeeEEEEEEecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCC-------
Q psy2145 113 IDTIPEDSGTYTCRAVNLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP------- 184 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P------- 184 (808)
.+++.+|+|.|.|.+.|..+.. ...+.|.|....... ....+|
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~-----------------------------~p~~pp~~~~~~~ 145 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDA-----------------------------KKDAAKKDDAKKD 145 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC--------------------------------------------------
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCC-----------------------------Ccccccccccccc
Confidence 9999999999999999875432 233456665321100 000111
Q ss_pred -------eEEeecCceeecCCCeEEEEEEEeecCCC--CeEEEEeeC--CEEc-------------------cCCCceEE
Q psy2145 185 -------IFTTSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHN--NVPI-------------------KSGSRFTE 234 (808)
Q Consensus 185 -------~~~~~~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~l-------------------~~~~~~~~ 234 (808)
.+...+....+.+|++++|.|.+. +.+ .+.+.|||+ |..+ ....++.+
T Consensus 146 ~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~ 223 (268)
T 1x9q_A 146 DAKKDGGVKLDETGGGLVQPGGAMKLSCVTS--GFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTI 223 (268)
T ss_dssp ---CGGGCEEEEECCEEECTTCCEEEEEEEE--SSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEE
T ss_pred ccccccceEEECCCceEecCCCcEEEEEEec--CccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEE
Confidence 234455677899999999999994 444 478999985 3221 12345555
Q ss_pred Eec--CceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 235 TNN--FGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 235 ~~~--~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
..+ .+..+|.|.+++.+|+|.|+|.|.|.
T Consensus 224 ~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 224 SRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 432 23568999999999999999999984
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=168.78 Aligned_cols=166 Identities=17% Similarity=0.314 Sum_probs=118.0
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--Eec-----------------CCCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPL-----------------EDSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l-----------------~~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+ ....|+.+..+ .+..+|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (225)
T 1op3_H 11 LVKAGGSLILSCGV--SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (225)
T ss_dssp EEETTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EecCCCCEEEEEEe--cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 58899999999999 6666 6889999853 211 11357776654 3567899999999
Q ss_pred CCCEEEEEEEEeCCe-----e---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecC
Q psy2145 572 EDEGIYICKATNALG-----E---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLT 643 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G-----~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~ 643 (808)
+|+|.|.|.+.|..| . ....+.|.|...+. .+|.+.....
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~v~~~~~ 136 (225)
T 1op3_H 89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST--------------------------------KGPSVFPLAP 136 (225)
T ss_dssp GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC--------------------------------BCCEEEEECC
T ss_pred hhCEEEEEEEecCCCccccccceeecCCEEEecccCCC--------------------------------cCCeEEEecc
Confidence 999999999999865 2 11235777765211 1355443322
Q ss_pred CCccccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccC---------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKM---------GSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
. ..+.+|+.++|.|.+ .|. |.| .|.|++||..+.. ++.|.+ .+.|.|..+..+| |.|+|.
T Consensus 137 ~-~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-g~Y~C~ 207 (225)
T 1op3_H 137 S-SKSTSGGTAALGCLV--KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICN 207 (225)
T ss_dssp C-TTCCCCCEEEEEEEE--EEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEE-----EEEEEEEGGGTTC-CCCCEE
T ss_pred c-ccccCCCcEEEEEEE--EeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEE-----EEEEEEechhcCC-CcEEEE
Confidence 2 246789999999999 565 776 9999999976421 112221 2469999998889 999999
Q ss_pred EEeCCcceEEE
Q psy2145 713 AINRAGEAVSS 723 (808)
Q Consensus 713 A~N~~G~~~~s 723 (808)
|.|..+.....
T Consensus 208 a~n~~~~~~~~ 218 (225)
T 1op3_H 208 VNHKPSNTKVD 218 (225)
T ss_dssp EEEGGGTEEEE
T ss_pred EEcCCCCccEE
Confidence 99988765433
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=164.45 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=120.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---e---e-------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---V---T-------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l---~-------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++|+|.|.+.+...+.+.+.|||. +.. + . ...|+.+..+ .+.++
T Consensus 4 ~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 82 (221)
T 3m8o_H 4 LVESGGG-LVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAF 82 (221)
T ss_dssp EEEESCE-EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEE
T ss_pred EEccCCE-EEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEE
Confidence 4456667 89999999999999852234679999983 211 1 0 1257777654 46778
Q ss_pred EEEcccCcCCCeeEEEEEEecC--cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLV--GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
|.|.+++.+|+|.|.|.+.+.. ......+.|.|.... ..+|.+.
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~p~v~ 128 (221)
T 3m8o_H 83 LQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS----------------------------------PTSPKVF 128 (221)
T ss_dssp EEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC----------------------------------CBCCEEE
T ss_pred EEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC----------------------------------CCCCeEE
Confidence 9999999999999999999863 223344566664211 3456665
Q ss_pred -eecCceeecCCCeEEEEEEEeecCCCC--eEEEEeeCCEEccCCCceEEE-ecCce----EEEEEccCCCCCcEEEEEE
Q psy2145 188 -TSLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNNVPIKSGSRFTET-NNFGF----VALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 188 -~~~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~~~g~~l~~~~~~~~~-~~~~~----~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+... .+|+.++|.|.+.+ ..|. +.+.|+++|..+......... ..++. ..|.|..+..+|.|.|+|.
T Consensus 129 ~~~~~~~--~~g~~v~L~C~~~~-~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~ 205 (221)
T 3m8o_H 129 PLSLCST--QPDGNVVIACLVQG-FFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCH 205 (221)
T ss_dssp EEECCSC--CCTTEEEEEEEEEE-EBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEE
T ss_pred EecCccc--ccCCCEEEEEEEEe-eECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEE
Confidence 333333 78999999999964 2554 699999999877321111111 11111 2599999999999999999
Q ss_pred EEeCcee
Q psy2145 260 AVNALGQ 266 (808)
Q Consensus 260 a~n~~g~ 266 (808)
|.|..+.
T Consensus 206 v~~~~~~ 212 (221)
T 3m8o_H 206 VKHYTNP 212 (221)
T ss_dssp EEETTSC
T ss_pred EEECCCC
Confidence 9997654
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=171.50 Aligned_cols=190 Identities=18% Similarity=0.336 Sum_probs=123.2
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCC-----CcEEEEEECC--EecC------------CCCCeEEEeeCcEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-----TLKVEWFRNE--KPLE------------DSSRITTKHDFGYVA 563 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-----~~~v~W~k~g--~~l~------------~~~~~~~~~~~~~~~ 563 (808)
.+.+...+..+ .+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+. ...|+.+...++..+
T Consensus 15 ~~~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~ 91 (268)
T 1x9q_A 15 DVVMTQTPLSL-PVSLGDQASISCRS--SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFT 91 (268)
T ss_dssp CCCEEEECSEE-CCCTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred cceEEeeCCeE-EecCCCCEEEEeEe--cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEE
Confidence 45555555555 68999999999999 6776 5889999853 2111 246777766667779
Q ss_pred EEECCCCCCCCEEEEEEEEeCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC-----e
Q psy2145 564 MDLSHVRAEDEGIYICKATNALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP-----I 637 (808)
Q Consensus 564 L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P-----~ 637 (808)
|.|.+++.+|+|.|.|.|.|..+.. .....|.|...+... .+..|. ........| .
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~-~p~~pp-----------------~~~~~~~~~~~~~~v 153 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDA-KKDAAK-----------------KDDAKKDDAKKDGGV 153 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------------------------CGGGC
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCC-Cccccc-----------------cccccccccccccce
Confidence 9999999999999999999986532 223566666532100 000000 000000001 1
Q ss_pred EEeecCCCccccCCceEEEEEEEeeCCCCC--eEEEEEEC--CEEc-------------------cCCCcEEEEEeC--C
Q psy2145 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPT--MRFEWFVN--GVEL-------------------KMGSRFHVQHDF--G 692 (808)
Q Consensus 638 ~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~--p~i~W~~~--g~~l-------------------~~~~~~~~~~~~--~ 692 (808)
+...+ ....+.+|++++|.|.+ .|.|. +.|.|||+ |..+ ....|+.+..+. .
T Consensus 154 ~~~~~-~~~~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 230 (268)
T 1x9q_A 154 KLDET-GGGLVQPGGAMKLSCVT--SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKS 230 (268)
T ss_dssp EEEEE-CCEEECTTCCEEEEEEE--ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGT
T ss_pred EEECC-CceEecCCCcEEEEEEe--cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCC
Confidence 22222 23578999999999999 67663 89999985 3322 124677776543 4
Q ss_pred EEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 693 YVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 693 ~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
..+|.|.++..+|+|.|+|.|.|.
T Consensus 231 ~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 231 SVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEECCCCHHHCEEEEEEEccC
Confidence 678999999999999999999985
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=162.96 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=111.2
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec------------cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI------------GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~------------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
.+.+|++|+|.|.+. .|.+.|.|+|++..|.. ..|+.+. ....+|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~~~G~~VtL~c~~~---~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG~Y~C~~~ 80 (171)
T 1ccz_A 6 YGVVYGNVTFHVPSN---VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMESP 80 (171)
T ss_dssp EEETTCCEEECCCCS---SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC--TTTCCEEECSCCGGGCEEEEEECT
T ss_pred EEEcCCCEEEcCCCC---CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe--CCCCeEEECCCChhhCceEEEEEe
Confidence 678999999999984 37889999999876542 1233332 223379999999999999999999
Q ss_pred ecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEe
Q psy2145 129 NLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLI 208 (808)
Q Consensus 129 n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~ 208 (808)
|..| ...+.|.|... ...|.+...... ..|.|.+
T Consensus 81 n~~~--~~~~~L~V~~~-----------------------------------~~~p~i~~~~~~--------~~L~C~~- 114 (171)
T 1ccz_A 81 NITD--TMKFFLYVLEM-----------------------------------VSKPMIYWECSN--------ATLTCEV- 114 (171)
T ss_dssp TCCS--CEEEEEEEECC-----------------------------------CCCCEEEEETTT--------TEEEEEC-
T ss_pred CCCC--cEEEEEEEECc-----------------------------------CCCCEEEEecCC--------cEEEEEe-
Confidence 8877 66777877643 223555443321 2799999
Q ss_pred ecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEE
Q psy2145 209 PVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLL 274 (808)
Q Consensus 209 ~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 274 (808)
.+.|.+.|.|+++|..+....+. .|.+. ...|+|.|+|.|.|..|...+++.|.
T Consensus 115 -~~~p~p~i~W~~~~~~l~~~~~~---------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 115 -LEGTDVELKLYQGKEHLRSLRQK---------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp -SSCSSCEEEEEETTEEEEEESSS---------EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred -CCCCCcEEEEEECCEECcCCcce---------EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 57788999999999988643322 34443 37889999999999999887776554
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=173.54 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=116.3
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCc-----eEEEEeCCEEee--------ccCcEEEE----------eeCCeE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNL-----KVEWFKNGRPVT--------IGHRFRPI----------HDFGYV 108 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~-----~v~W~~~g~~l~--------~~~r~~~~----------~~~~~~ 108 (808)
.+..|..+ .+.+|++++|.|.+.+ .|.+ .|.|+|++.... .+.+.... ...+..
T Consensus 6 ~v~~p~~~-~v~~G~~v~L~C~~~g--~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
T 3pv7_A 6 EMMAGGTQ-ITPLNDNVTIFCNIFY--SQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA 82 (248)
T ss_dssp ECSTTSEE-EEETTSCEEECCEEEE--SSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred EEeCCCCe-EEeCCCCEEEeeEEec--CCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence 34556666 8899999999999984 4444 499999642211 01111110 012344
Q ss_pred EEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
+|.|.+++.+|+|.|+|.+.|..+.....+.|.|.. +|.+..
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~--------------------------------------~P~v~~ 124 (248)
T 3pv7_A 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA--------------------------------------SPASRL 124 (248)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB--------------------------------------CCEEEE
T ss_pred EEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEec--------------------------------------CCceEE
Confidence 699999999999999999999888878888888853 555555
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCc--------eEEEecCc----eEEEEEccCCCCCcEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSR--------FTETNNFG----FVALDIMQCLPEDSGV 255 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~--------~~~~~~~~----~~~L~I~~~~~~D~G~ 255 (808)
.+. ..+..|+.++|.|.+.+ ..|.+ .|.|+++|..+..+.. .......+ ...|.|.....+|.|.
T Consensus 125 ~~~-~~~~~~~~~~L~C~~~g-~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ 202 (248)
T 3pv7_A 125 LLD-QVGMKENEDKYMCESSG-FYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTV 202 (248)
T ss_dssp ECC---------CEEEEEEEE-EBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCE
T ss_pred ecC-CccccCCCcEEEEEEcc-EECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCE
Confidence 554 33456888899999953 36777 9999999975542210 01111122 1368899999999999
Q ss_pred EEEEEEeCcee--EEEEEEEEE
Q psy2145 256 YTCRAVNALGQ--AVTSGNLLV 275 (808)
Q Consensus 256 Y~C~a~n~~g~--~~~~~~l~V 275 (808)
|+|.|.|..+. ...++.|.|
T Consensus 203 YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 203 YQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp EEEEEECTTCSSCEEEEECC--
T ss_pred EEEEEECCCCCCCcEEEEEEEE
Confidence 99999998886 444555665
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=164.73 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=121.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee-------------ccCcEEEEee--CCeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT-------------IGHRFRPIHD--FGYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~-------------~~~r~~~~~~--~~~~~L~I 112 (808)
+..|..+ .+.+|++++|.|.+.+.....+.+.|||.. . .+. ...|+.+..+ .+.++|.|
T Consensus 4 l~qp~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (232)
T 1dn0_B 4 LQQWGAG-LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKL 82 (232)
T ss_dssp EEEECCC-EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCE-EEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEE
Confidence 4456777 899999999999998521235789999842 2 121 1357777654 45779999
Q ss_pred cccCcCCCeeEEEEEEecC--cc----eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 113 IDTIPEDSGTYTCRAVNLV--GF----AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~~--g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
.+++.+|+|.|.|.+.+.. +. ....+.|.|.... ..+|.+
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------~~~P~v 128 (232)
T 1dn0_B 83 SSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS----------------------------------ASAPTL 128 (232)
T ss_dssp CSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC----------------------------------CBCCEE
T ss_pred CCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCC----------------------------------CCCCce
Confidence 9999999999999998421 11 1234567775311 235555
Q ss_pred EeecCceeecCC-CeEEEEEEEeecCCCCe-EEEEee-CCEEccCCCce-EEEecCc---eEEEEEccCCC--CCcEEEE
Q psy2145 187 TTSLKNCEIKEG-QRAHFECRLIPVSDNTM-KVEWFH-NNVPIKSGSRF-TETNNFG---FVALDIMQCLP--EDSGVYT 257 (808)
Q Consensus 187 ~~~~~~~~v~~G-~~v~L~C~~~~~~~p~~-~v~W~~-~g~~l~~~~~~-~~~~~~~---~~~L~I~~~~~--~D~G~Y~ 257 (808)
........+.+| +.++|.|.+.+ ..|.+ .|.|++ ||..+.....+ .....+. ...|.|..... +|.|.|+
T Consensus 129 ~~~~p~~~~~~g~~~v~L~C~~~g-~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~yt 207 (232)
T 1dn0_B 129 FPLVSCENSPSDTSSVAVGCLAQD-FLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVV 207 (232)
T ss_dssp EEEECC------CCSEEEEEEEEE-EBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEE
T ss_pred EEeccccccCCCCCcEEEEEEEEE-EeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEE
Confidence 543222335578 99999999963 34665 999999 99887541000 0011111 13689998887 8999999
Q ss_pred EEEEeCceeEEEEEEEEEe
Q psy2145 258 CRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 258 C~a~n~~g~~~~~~~l~V~ 276 (808)
|.|.|..|.......+.|.
T Consensus 208 C~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 208 CKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EEEECTTCCEEEEEECCC-
T ss_pred EEEEeCCCCcceeEecCCC
Confidence 9999998877666655543
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-19 Score=177.96 Aligned_cols=178 Identities=19% Similarity=0.296 Sum_probs=102.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC--Eec------------CCCCCeEEEeeCcEEEEEECC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPL------------EDSSRITTKHDFGYVAMDLSH 568 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~I~~ 568 (808)
.+.+..++..+ .+.+|++++|.|.+ .+.|.+.|.|+|++ ..+ ....++.....++..+|.|.+
T Consensus 23 ~~~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 99 (233)
T 3bqu_C 23 ETTVTQSPASL-SMSIGEKVTIRCIT--STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIEN 99 (233)
T ss_dssp CCCEEEECSBC--------CCEEEEE--EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC---
T ss_pred ceeEEEcCCeE-EEecCCCEEEEEec--CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECC
Confidence 34455545554 68999999999999 67777889999853 221 112344444444556899999
Q ss_pred CCCCCCEEEEEEEEeCCeeEE-EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 569 VRAEDEGIYICKATNALGEAV-TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~-~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
++.+|+|.|.|.|.|..+... ....|.|...+ .+|.+...... ..
T Consensus 100 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---------------------------------~~p~v~~~~~~-~~ 145 (233)
T 3bqu_C 100 MLSEDVADYYCLQSDNLPYTFGGGTNLEIKRAD---------------------------------AAPTVSIFPPS-SE 145 (233)
T ss_dssp --CCCCSEEEEEECSSSSCCBCCCCBC---CCC---------------------------------BCCEEEEECCC-HH
T ss_pred CCHHHCEEEEEEEecCCceeecCCEEEEEeCCC---------------------------------CCCEEEEeCCC-HH
Confidence 999999999999999866322 12344444311 13666554433 23
Q ss_pred ccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCCcEE--EEE--eC---CEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 648 IMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGSRFH--VQH--DF---GYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~--~~~--~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
+.+|+.++|.|.+ .|. |.+ .|.|+|||+.+..+.... ... ++ ..+.|.|..+..+|+|.|+|.|.|...
T Consensus 146 ~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 146 QLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp HHHTTEEEEEEEE--EEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred hhcCCceEEEEEE--ccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 4579999999999 564 443 899999999886541111 111 11 124799999999999999999999865
Q ss_pred c
Q psy2145 719 E 719 (808)
Q Consensus 719 ~ 719 (808)
.
T Consensus 224 ~ 224 (233)
T 3bqu_C 224 T 224 (233)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=169.95 Aligned_cols=179 Identities=15% Similarity=0.242 Sum_probs=115.7
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCC----CcEEEEEECCEecCCCCC-eEEEeeCc----EEEEEECCCCCCCC
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP----TLKVEWFRNEKPLEDSSR-ITTKHDFG----YVAMDLSHVRAEDE 574 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P----~~~v~W~k~g~~l~~~~~-~~~~~~~~----~~~L~I~~v~~~D~ 574 (808)
.+|+.++.....+.+|+++.|.|.+ .|.| .+.|.|+|++..+..... +.....++ ...|.|.+++.+|+
T Consensus 3 ~v~~~~P~~~~~v~~G~~v~L~C~~--~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~ 80 (207)
T 2vol_A 3 SVFIFPPKPKDVLTITLTPKVTCVV--VDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNG 80 (207)
T ss_dssp EEEEECCCHHHHHSTTSCCEEEEEE--EEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTT
T ss_pred cEEEeCcChhhhhccCCceEEEEEE--eCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCC
Confidence 4455555543237899999999999 4553 358999999987653210 00001111 23799999999999
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
|.|+|.|.|..|.......+.+.. ....+|.+....... ...+|+.+
T Consensus 81 G~Y~C~a~~~~~~~~~~~~v~~~~--------------------------------~~~~~P~v~~~~~~~-~~~~g~~~ 127 (207)
T 2vol_A 81 KEFKCRVNSAAFPAPIEKTISKTK--------------------------------GRPKAPQVYTLPPPK-EQMAKDKV 127 (207)
T ss_dssp CCEEEEEECTTCSSCEEEEECCCC--------------------------------CCCBCCEEEEECCCT-GGGSSSEE
T ss_pred CEEEEEEEccCCCCceEEEeccCC--------------------------------CCCcCCeEEEeCCCH-HHhcCCce
Confidence 999999999988642222222100 011246665544432 23469999
Q ss_pred EEEEEEeeCC-CCC-eEEEEEECCEEccCCCcE--EEEEeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 655 HYDCRVVPVG-DPT-MRFEWFVNGVELKMGSRF--HVQHDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 655 ~l~C~v~~~g-~P~-p~i~W~~~g~~l~~~~~~--~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+|.|.+ .| .|. +.|.|+|||.++...... ....++.+ +.|.|.....+|.|.|+|.|.|....
T Consensus 128 ~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 128 SLTCMI--TDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEEEE--EEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EEEEEE--eeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 999999 56 455 499999999988643221 11112222 34677766667899999999999653
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=146.77 Aligned_cols=97 Identities=27% Similarity=0.483 Sum_probs=89.8
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
...||.|+..+.++ .+.+|+.+.|.|.+ .|.|.|.|+|+|||+.|..+.++.+..+++..+|.|.+++.+|+|.|+|
T Consensus 10 ~~~pP~f~~~p~~~-~v~~G~~~~l~C~~--~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 86 (107)
T 3knb_B 10 QGSPPCFLRFPRPV-RVVSGAEAELKCVV--LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVC 86 (107)
T ss_dssp CCEEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCCEEEeCCCcE-EEeCCCcEEEEEEE--EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEE
Confidence 34589999999887 68999999999999 7999999999999999999999998888888899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEec
Q psy2145 580 KATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~ 599 (808)
.|.|..|..++++.|.|..+
T Consensus 87 ~a~N~~G~~~~~~~l~V~~p 106 (107)
T 3knb_B 87 RARNAAGEAYAAAAVTVLEP 106 (107)
T ss_dssp EEEETTEEEEEEEEEEEEC-
T ss_pred EEEECCCEEEEEEEEEEEcC
Confidence 99999999999999999864
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-19 Score=179.84 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=102.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EEe---e---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RPV---T---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~l---~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++++|.|.+.+ .|.+.|.|||++ ..+ . ...|+....+++..+|.|.+++.+
T Consensus 27 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 103 (233)
T 3bqu_C 27 TQSPASL-SMSIGEKVTIRCITST--DIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE 103 (233)
T ss_dssp EEECSBC--------CCEEEEEEE--EESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred EEcCCeE-EEecCCCEEEEEecCC--cCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence 3447777 8999999999999985 456689999853 211 1 134555544556668999999999
Q ss_pred CCeeEEEEEEecCcceE-EEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecC
Q psy2145 119 DSGTYTCRAVNLVGFAE-VQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKE 197 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~ 197 (808)
|+|.|+|.|.|..+... ....|.|... ..+|.+...+....+.+
T Consensus 104 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~-----------------------------------~~~p~v~~~~~~~~~~~ 148 (233)
T 3bqu_C 104 DVADYYCLQSDNLPYTFGGGTNLEIKRA-----------------------------------DAAPTVSIFPPSSEQLT 148 (233)
T ss_dssp CCSEEEEEECSSSSCCBCCCCBC---CC-----------------------------------CBCCEEEEECCCHHHHH
T ss_pred HCEEEEEEEecCCceeecCCEEEEEeCC-----------------------------------CCCCEEEEeCCCHHhhc
Confidence 99999999998765321 1234444321 24677777655545558
Q ss_pred CCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE--EE-ecCc----eEEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 198 GQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT--ET-NNFG----FVALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 198 G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~--~~-~~~~----~~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|++++|.|.+.+ ..|. ..|.|+|||..+..+.... .. ..++ ...|.|..+..+|+|.|+|.|.|...
T Consensus 149 g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 149 SGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp TTEEEEEEEEEE-EBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCceEEEEEEcc-ccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 999999999964 2344 4899999999886551111 11 1112 23689999999999999999999643
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=153.69 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=117.3
Q ss_pred cccCCCceEEEEEEeeCCCCCc--EEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 592 (808)
.+..|+++.|+|.+ +.|.| .|+|++.+..+ .+... +.+...|.|.+++.+|+|.|.|.|.|..|....++
T Consensus 18 ~v~~G~sv~L~C~a---~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~ 89 (210)
T 1gsm_A 18 AVALGASRQLTCRL---ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV 89 (210)
T ss_dssp EEETTCCEEEEEEE---CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEC---CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence 68999999999987 66666 99999976555 23322 24455899999999999999999999999988899
Q ss_pred EEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEEEEEeeCCC-C----C
Q psy2145 593 SMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-P----T 667 (808)
Q Consensus 593 ~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P----~ 667 (808)
.|.|...| .+..... ..+.+|+.+ |.|.+ .|. | .
T Consensus 90 ~ltV~~~P------------------------------------~~~~i~~--~~~~~g~~~-l~C~a--~g~~P~~~~~ 128 (210)
T 1gsm_A 90 QLLVYAFP------------------------------------NQLTVSP--AALVPGDPE-VACTA--HKVTPVDPNA 128 (210)
T ss_dssp EEEEEBCC------------------------------------SEEEEES--SSBCTTCCE-EEEEE--EEEBCCCTTT
T ss_pred EEEEEecC------------------------------------CCcEEcc--ceEEeCCce-EEEEe--CCCCCCCCCC
Confidence 99998753 3333222 256778888 99999 554 6 4
Q ss_pred eEEEEEECCEEccCCCcEE--EEE--------eCC----EEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 668 MRFEWFVNGVELKMGSRFH--VQH--------DFG----YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 668 p~i~W~~~g~~l~~~~~~~--~~~--------~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
+.|.|||||++|....... +.. ... .++|.+.....+|.+.|+|.|.|.+-....+-..
T Consensus 129 lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~~~~~ 201 (210)
T 1gsm_A 129 LSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQ 201 (210)
T ss_dssp EEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcccccc
Confidence 6999999999996432111 100 111 2345555666677789999999997555444333
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=173.62 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=128.4
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee--------------ccCcEEEEe--eCCeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT--------------IGHRFRPIH--DFGYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~--------------~~~r~~~~~--~~~~~~L~I~ 113 (808)
.|..+ .+.+|++|+|.|.+.+...+.+.+.|||.. .. +. ...|+.+.. ..+.++|.|.
T Consensus 6 qp~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (280)
T 3fku_X 6 QSGAE-VKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLR 84 (280)
T ss_dssp CCCCC-EECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEEC
T ss_pred cCCCE-EECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEEC
Confidence 37777 899999999999998532366799999832 11 10 124777663 3456799999
Q ss_pred ccCcCCCeeEEEEEEec---------CcceEEEEEEEEec-CCCccccccccccceeeeeeccccccccccccccccCCC
Q psy2145 114 DTIPEDSGTYTCRAVNL---------VGFAEVQATLQCRG-SAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~---------~g~~~~~~~l~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (808)
+++.+|+|.|.|.+.|. .......+.|.|.. ...... ........+
T Consensus 85 ~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~------------------------~~~~~~~~~ 140 (280)
T 3fku_X 85 SLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGG------------------------GGSGGGGIQ 140 (280)
T ss_dssp SCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------------------------------CC
T ss_pred CCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCC------------------------CCCCceEee
Confidence 99999999999999986 11122345566643 100000 000001234
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecC-CC-CeEEEEeeC--CEEcc------------CCCceEEEecCceEEEEEcc
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVS-DN-TMKVEWFHN--NVPIK------------SGSRFTETNNFGFVALDIMQ 247 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~-~p-~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~ 247 (808)
|.+...+. ..+.+|++|+|.|.+. + .+ .+.+.|||. +..+. ...++....+....+|.|.+
T Consensus 141 ~~v~~~p~-~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 217 (280)
T 3fku_X 141 PGLTQPPS-VSKGLRQTATLTCTGN--SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITG 217 (280)
T ss_dssp CSBBCCSE-EEECTTCCEEEEEECC--CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECS
T ss_pred eEEEeCCc-EEEecCCCEEEEEEec--CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECC
Confidence 55555555 8899999999999994 4 33 478999982 33221 13566666666677899999
Q ss_pred CCCCCcEEEEEEEEeCce--e-EEEEEEEEEee
Q psy2145 248 CLPEDSGVYTCRAVNALG--Q-AVTSGNLLVHS 277 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g--~-~~~~~~l~V~~ 277 (808)
++.+|+|.|.|.+.|..+ . ....+.|.|..
T Consensus 218 v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~ 250 (280)
T 3fku_X 218 LQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLG 250 (280)
T ss_dssp CCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC-
T ss_pred CCHHHCEEEEEEEecCCCCceEECCCEEEEECC
Confidence 999999999999999762 1 22335677754
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=144.82 Aligned_cols=93 Identities=25% Similarity=0.441 Sum_probs=82.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC--cEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||++|..+. ++.+..+++.++|.|.++..+|+|.|+|.
T Consensus 5 PP~i~~~p~-~~~v~~G~~~~l~C~~--~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 81 (100)
T 3knb_A 5 PPKIEALPS-DISIDEGKVLTVACAF--TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS 81 (100)
T ss_dssp EEEECCCCS-EEEEETTSEEEEEEEE--EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred CCEEEeCCC-cEEEeCCCeEEEEEEE--EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence 466665544 3678999999999999 799999999999999997654 68888888889999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEe
Q psy2145 713 AINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~ 730 (808)
|+|.+|.++.++.|.|+.
T Consensus 82 a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 82 LGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCEEEEEEEEEEEE
Confidence 999999999999999974
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=161.43 Aligned_cols=156 Identities=16% Similarity=0.258 Sum_probs=111.6
Q ss_pred CCccccCCCCcEEEEEEEeeCCCCCceEEEEeC-CEEee------------cc--CcEEEEeeCCeEEEEEcccCcCCCe
Q psy2145 57 KSIENLRERGHAHFECKLEPVTDSNLKVEWFKN-GRPVT------------IG--HRFRPIHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 57 ~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~-g~~l~------------~~--~r~~~~~~~~~~~L~I~~~~~~D~G 121 (808)
..+ .+.+|++|+|.|.+.. ..+.+.|.|+|+ +..|. .. .|+.+ +.+..+|.|.+++.+|+|
T Consensus 7 ~~v-~v~~G~~vtL~c~~~~-~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G 82 (180)
T 2dru_A 7 PNV-NAITGSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRG 82 (180)
T ss_dssp CEE-EEETTSCEEECCCSSC-CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCE
T ss_pred ceE-EEEeCCCEEEeCCCCC-CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCe
Confidence 344 7899999999999853 345789999994 43332 11 35554 223347999999999999
Q ss_pred eEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeE
Q psy2145 122 TYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRA 201 (808)
Q Consensus 122 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v 201 (808)
.|+|.+.+.. .....+.|.|... ...|.+.. .++.+
T Consensus 83 ~Y~C~v~~~~-~~~~~~~L~V~~~-----------------------------------~~~P~i~~--------~~~~v 118 (180)
T 2dru_A 83 DYYMRMLHET-EDQWKITMEVYEM-----------------------------------VSKPMIYW--------ECSNA 118 (180)
T ss_dssp EEEEEEESSS-EEEEEEEEEEECC-----------------------------------CCCCEEEE--------EGGGT
T ss_pred EEEEEEEcCC-eEEEEEEEEEECC-----------------------------------CCCCEEEe--------cCCCE
Confidence 9999998765 5566777877642 22344433 34569
Q ss_pred EEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEE
Q psy2145 202 HFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNL 273 (808)
Q Consensus 202 ~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 273 (808)
+|.|.+. ..|.+.|.|+++|..+.. ..+. +|.+.. .+|+|.|+|.|.|..|...+...+
T Consensus 119 ~L~C~~~--~gp~p~i~W~~~~~~l~~-------~~~~--~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 119 TLTCEVL--EGTDVELKLYQGKEHLRS-------LRQK--TMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp EEEEECS--SCTTCEEEEEETTEEEEE-------ESSS--EEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred EEEEEeC--CCCCCEEEEEECCeECcC-------CCCC--EEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 9999983 338899999999998861 1112 566633 789999999999999987766544
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=168.86 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=123.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC-----EEe--------------eccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG-----RPV--------------TIGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g-----~~l--------------~~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+...+...+.|||.. ..+ ....|+.+..+ .+.++|.
T Consensus 4 v~~p~~v-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (253)
T 3liz_H 4 LVESGGG-LVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQ 82 (253)
T ss_dssp EEEECCC-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEE
T ss_pred EEcCCCE-EECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 4456677 899999999999998522346789999832 111 01257776654 3677899
Q ss_pred EcccCcCCCeeEEEEEEecC----cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE
Q psy2145 112 IIDTIPEDSGTYTCRAVNLV----GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT 187 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 187 (808)
|.+++.+|+|.|.|.+.|.. +.....+.|.|.... ..+|.+.
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~P~i~ 128 (253)
T 3liz_H 83 MSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK----------------------------------TTPPSVY 128 (253)
T ss_dssp ECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC----------------------------------CBCCEEE
T ss_pred ECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC----------------------------------CCCCeEE
Confidence 99999999999999998752 222334566664211 3467776
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
.......+.+|+.++|.|.+.+ ..|.+ .+.|+++|..+...........+. ...|.|.....+| |.|+|.|.|.
T Consensus 129 ~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~ 206 (253)
T 3liz_H 129 PLAPGSAAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHP 206 (253)
T ss_dssp EECC------CCEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEG
T ss_pred EecCCcccCCCCcEEEEEEEee-EeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEEC
Confidence 5555556778999999999964 25655 899999987432110000111111 1369999999999 9999999998
Q ss_pred ceeEEEEEEEEEe
Q psy2145 264 LGQAVTSGNLLVH 276 (808)
Q Consensus 264 ~g~~~~~~~l~V~ 276 (808)
.+.......|.+.
T Consensus 207 ~~~~~~~~~~~~~ 219 (253)
T 3liz_H 207 ASSTKVDKKIVPR 219 (253)
T ss_dssp GGTEEEEEECCCC
T ss_pred CCCcceEEEecCc
Confidence 8877666666543
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-18 Score=169.45 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=115.2
Q ss_pred CCeeeecCCCccc-ccCCCceEEEEEEeeCCC---C-CcEEEEEECCEecCCCCCeEE-EeeC----cEEEEEECCCCCC
Q psy2145 503 RPVFTKPLQNIDA-VEEGKNAHFSCRLIPVGD---P-TLKVEWFRNEKPLEDSSRITT-KHDF----GYVAMDLSHVRAE 572 (808)
Q Consensus 503 ~P~f~~~~~~~~~-v~~G~~v~l~C~v~~~g~---P-~~~v~W~k~g~~l~~~~~~~~-~~~~----~~~~L~I~~v~~~ 572 (808)
+|.+....+.... +.+|+.++|.|.+ .|. | .+.|+|+|+|..+........ ...+ ....|.|.+++.+
T Consensus 9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~--~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 86 (218)
T 2rgs_A 9 GPSVFIFPPNIKDVLMISLTPKVTCVV--VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM 86 (218)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEE--EEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCEEEEECcCHHHhhccCCCeeEEEEE--cCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence 4555444444323 7899999999999 454 4 489999999988754321110 1111 1237999999999
Q ss_pred CCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCc
Q psy2145 573 DEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQ 652 (808)
Q Consensus 573 D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~ 652 (808)
|+|.|+|.|.|..+.......+... . ....+|.+........ ..+|+
T Consensus 87 D~g~Y~C~~~~~~~~~~~~~~v~~~--~------------------------------~~~~~P~v~~~~~~~~-~~~g~ 133 (218)
T 2rgs_A 87 SGKEFKCKVNNKDLPSPIERTISKI--K------------------------------GLVRAPQVYILPPPAE-QLSRK 133 (218)
T ss_dssp TTCCEEEEEEETTCSSCEEEEECCC--C------------------------------CCCBCCEEEEECCCGG-GTTSS
T ss_pred CCCeEEEEEECCcCCCcceEEEeec--C------------------------------CCCCCCEEEEECCChH-HhcCC
Confidence 9999999999997754222222110 0 0112466655444322 34699
Q ss_pred eEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEEE-EeCC-E---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 653 SAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHVQ-HDFG-Y---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 653 ~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~~-~~~~-~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
.++|.|.+ .| .|.+ .|.|+|||..+......... ..++ + +.|.|.....+|.|.|+|.|.|....
T Consensus 134 ~~~L~C~~--~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 134 DVSLTCLV--VGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp EEEEEEEE--EEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred ceEEEEEE--EeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 99999999 67 6765 99999999988543221111 1122 2 24566655556799999999998754
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=164.88 Aligned_cols=185 Identities=15% Similarity=0.205 Sum_probs=134.8
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEcccCcCCCeeEEEEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDTIPEDSGTYTCRA 127 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 127 (808)
++.+..|.++ .+.+|+.++|.|.+. +.|.+.|.|+|+|..|..+ .++.+..+....+|.|.++..+|+|.|+|.|
T Consensus 19 ~P~~~~p~~~-~~~~G~~v~l~C~~~--g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 19 APKLQGPVAV-YTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp EEEEECCSEE-EECTTCCEEEEEEEE--EESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred CCcccCCceE-EEECCCCEEEEEEEe--ecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 3444677777 899999999999999 4788899999999999876 5777777777789999999999999999999
Q ss_pred EecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEE
Q psy2145 128 VNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRL 207 (808)
Q Consensus 128 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~ 207 (808)
.|..|.....+.|.|...+ .+|..... ...+..+.|.|..
T Consensus 96 ~n~~g~~~~~~~l~v~~~P-----------------------------------~~p~~~~~-----~~~~~~~~l~w~~ 135 (215)
T 3mtr_A 96 VNRIGQESLEFILVQADTP-----------------------------------SSPSIDQV-----EPYSSTAQVQFDE 135 (215)
T ss_dssp ECSSCEEEEEEEEEECCCC-----------------------------------CCCEEEEE-----EEETTEEEEEEEC
T ss_pred EECCCceEEEEEEEECCCC-----------------------------------CCCcceEE-----EEecceEEEEEec
Confidence 9999999888888886432 23322211 2346778999974
Q ss_pred ee--cCCCCe--EEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 208 IP--VSDNTM--KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 208 ~~--~~~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
.. .+.|.. .+.|++++........+.........+|.|.++.+.|.|.|+|.|.|..|....+..+.|..
T Consensus 136 p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T 209 (215)
T 3mtr_A 136 PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209 (215)
T ss_dssp CSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred CCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence 21 122332 58898877542211111111111112799999999999999999999999877776666654
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-16 Score=149.63 Aligned_cols=167 Identities=11% Similarity=0.247 Sum_probs=121.6
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCC---CeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN---TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
+.+...|....+..|+.++|+|.+.+ +.| +..++|+|||.++..... .|.|..+...|+|.|+|++
T Consensus 3 ~tVs~~P~~~~i~~GdsVTLTatVaG-GkP~pspyTYqWyKDG~~IsGaT~----------tLti~s~t~sdSG~YqCvV 71 (304)
T 3shs_A 3 FTVSIQSNKRCFLAGDGFTLTATVAG-DEPLPSNLTYTWTKDDQPHENNTA----------TLTVADATSENAGSYKVTV 71 (304)
T ss_dssp EEEEEEESCSSBCTTCCEEEEEEEEE-SSSCCCCEEEEEEETTEECSCCSS----------EEEESSCCGGGCEEEEEEE
T ss_pred cEEEeCCCCccccCCCCEEEEEEecC-CCCCCCCceEEEEECCccccCCcc----------eEEeeeccccCCeEEEEEE
Confidence 34566777888999999999999974 767 679999999998765322 7889999999999999999
Q ss_pred EeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee-ccCCCceEeecCCeEEEEEEE
Q psy2145 261 VNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF-TQPMRDIHVAENQAAHFEARL 339 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~G~~~~l~C~~ 339 (808)
.|..|....+..+.|..... +.+ ...+....+..|..+.|.+.+
T Consensus 72 TDa~Gcs~tSs~VtVT~~a~-----------------------------------l~i~it~P~s~~vssg~sVtL~aTV 116 (304)
T 3shs_A 72 QDTDTMTSVESEVFLMEEAE-----------------------------------LIVNITEPQHFYVSSQTDVELHATV 116 (304)
T ss_dssp EETTTCCEEECCCEEECBCC-----------------------------------EEEEESSCSEEEECSSCCEEEEEEE
T ss_pred EECCCCeeeeeeEEEeccCc-----------------------------------eeEEecCCCceeccCCCeEEEEEEE
Confidence 99888666555555554221 111 122334445667889999887
Q ss_pred ee-cCCC-----ccEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcceEEE--EEEEE
Q psy2145 340 IP-VGDS-----KLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTS--STLFV 407 (808)
Q Consensus 340 ~~-~g~p-----~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~~~~~--~~l~V 407 (808)
.. .|.| .++++|++||..+.... .|.+......++|.|+|++.|..+.-..+ +.|.+
T Consensus 117 t~SGGtppA~~~~yTYQWyKngt~IsgAq-----------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~ 181 (304)
T 3shs_A 117 KFSGGKTPADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181 (304)
T ss_dssp EETTSCCSSTTCCCEEEEEETTEEEESSS-----------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEE
T ss_pred eccCCCCcccCCCceeEEeeCCeEccCcc-----------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEE
Confidence 22 3444 57999999998775332 47778888899999999999998744333 44444
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=166.34 Aligned_cols=180 Identities=17% Similarity=0.264 Sum_probs=122.4
Q ss_pred eeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEE--------------CCEecCCC----CCeEEEee-CcEEEEE
Q psy2145 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--------------NEKPLEDS----SRITTKHD-FGYVAMD 565 (808)
Q Consensus 505 ~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k--------------~g~~l~~~----~~~~~~~~-~~~~~L~ 565 (808)
.++.++..+ .+.+|++|+|.| . .+.|.+.|.|+| ++..+... .|+.+..+ .+.++|.
T Consensus 4 ~v~~~p~~v-~v~~G~~v~L~C-~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~ 79 (245)
T 4ei6_B 4 KVLQIPSHQ-IIDMGQMVTLNC-D--PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLK 79 (245)
T ss_dssp CCEEECSEE-EEETTCCEEEEE-E--CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEE
T ss_pred ceEeCCceE-EecCCCCEEEEE-E--cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEE
Confidence 344444444 688999999999 5 688999999998 33322221 67766653 4466899
Q ss_pred ECCCCCCCCEEEEEEEEeC----CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 566 LSHVRAEDEGIYICKATNA----LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 566 I~~v~~~D~G~Y~C~a~N~----~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
|.+++.+|+|.|.|.|.+. .+.......|.|..... ...+|.+...
T Consensus 80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~p~~~~~ 129 (245)
T 4ei6_B 80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK------------------------------NVFPPEVAVF 129 (245)
T ss_dssp ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG------------------------------GCBCCEEEEE
T ss_pred ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccC------------------------------CCCCceEEEe
Confidence 9999999999999999963 23333445677764211 0123655544
Q ss_pred cCCCccccCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEEEE--------eCC---EEEEEEccCCCCC-cE
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHVQH--------DFG---YVTLDITKCVPAD-SG 707 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~~~--------~~~---~~~L~I~~v~~~D-~G 707 (808)
......+.+|+.++|.|.+ .| .|.+ .|.|++||..|..+.+..... ++. .+.|.|.....+| .|
T Consensus 130 ~~~~~~~~~g~~v~l~C~~--~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g 207 (245)
T 4ei6_B 130 EPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRN 207 (245)
T ss_dssp CCCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTC
T ss_pred CCCcccccCCCceEEEEEE--eeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCC
Confidence 4443457789999999999 56 4544 899999999987543221100 111 1358899888888 99
Q ss_pred EEEEEEEeCCcce
Q psy2145 708 VYMCKAINRAGEA 720 (808)
Q Consensus 708 ~Y~C~A~N~~G~~ 720 (808)
.|+|.|.|.....
T Consensus 208 ~ytC~v~~~~l~~ 220 (245)
T 4ei6_B 208 HFRCQVQFYGLSE 220 (245)
T ss_dssp EEEEEEEECCBCT
T ss_pred eEEEEEEECCCCC
Confidence 9999999986543
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=166.04 Aligned_cols=177 Identities=17% Similarity=0.270 Sum_probs=120.7
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEE--------------CCEecC---CCCCeEEEee-CcEEEEEECC
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--------------NEKPLE---DSSRITTKHD-FGYVAMDLSH 568 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k--------------~g~~l~---~~~~~~~~~~-~~~~~L~I~~ 568 (808)
..++..+ .+.+|+.|.|.|.+ .+ |.+.|.|+| ++.... ...|+.+..+ .+.++|.|.+
T Consensus 6 ~~~p~~v-~v~~G~~v~L~C~~--~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 81 (240)
T 3q5y_A 6 VQSPRHI-IKEKGGRSVLTCIP--IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 81 (240)
T ss_dssp EEECSEE-EEETTCCEEEEEEC--CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred ccCccee-eecCCCcEEEEEEe--CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence 3333333 58899999999998 44 788999998 222111 1256666543 3466899999
Q ss_pred CCCCCCEEEEEEEEeC---CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC
Q psy2145 569 VRAEDEGIYICKATNA---LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~---~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~ 645 (808)
++.+|+|.|.|.|.+. .+.......|.|..... ...+|.+.......
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~p~~~~~~~~~ 131 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR------------------------------NVTPPKVSLFEPSK 131 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGG------------------------------GCBCCEEEEECCCH
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEecccc------------------------------CCCCCeeEEeCCch
Confidence 9999999999999843 22233335666664211 01246655544444
Q ss_pred ccccCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEE---EEEeCCE----EEEEEccCCCCC-cEEEEEEEEe
Q psy2145 646 SEIMEGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFH---VQHDFGY----VTLDITKCVPAD-SGVYMCKAIN 715 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~---~~~~~~~----~~L~I~~v~~~D-~G~Y~C~A~N 715 (808)
..+.+|+.++|.|.+ .| .|.+ .|.|+|||++|..+.+.. ....++. +.|.|..+..+| .|.|+|.|.|
T Consensus 132 ~~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~ 209 (240)
T 3q5y_A 132 AEIANKQKATLVCLA--RGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQF 209 (240)
T ss_dssp HHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEE
T ss_pred hhcccCCceEEEEEE--eeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEc
Confidence 457789999999999 56 6655 899999999997643321 2223333 349999999888 7799999999
Q ss_pred CCcc
Q psy2145 716 RAGE 719 (808)
Q Consensus 716 ~~G~ 719 (808)
....
T Consensus 210 ~~~~ 213 (240)
T 3q5y_A 210 HGLS 213 (240)
T ss_dssp CCBC
T ss_pred CCCC
Confidence 8654
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=168.62 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=115.4
Q ss_pred cCCCCccc-cCCCCcEEEEEEEeeCC--CCCceEEEEeCCEEeeccCcEEE-EeeC----CeEEEEEcccCcCCCeeEEE
Q psy2145 54 TKPKSIEN-LRERGHAHFECKLEPVT--DSNLKVEWFKNGRPVTIGHRFRP-IHDF----GYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 54 ~~p~~~~~-v~~G~~v~l~C~~~~~~--~p~~~v~W~~~g~~l~~~~r~~~-~~~~----~~~~L~I~~~~~~D~G~Y~C 125 (808)
..|.+... +.+|++++|.|.+.+.. .+.+.|.|||+|..+........ ...+ ...+|.|.+++.+|+|.|+|
T Consensus 14 ~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C 93 (218)
T 2rgs_A 14 IFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKC 93 (218)
T ss_dssp EECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred EECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEE
Confidence 34555523 89999999999999632 23479999999988764321111 1111 22479999999999999999
Q ss_pred EEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEE
Q psy2145 126 RAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFEC 205 (808)
Q Consensus 126 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C 205 (808)
.|.|..+.......+... .....+|.+...+......+|+.++|.|
T Consensus 94 ~~~~~~~~~~~~~~v~~~----------------------------------~~~~~~P~v~~~~~~~~~~~g~~~~L~C 139 (218)
T 2rgs_A 94 KVNNKDLPSPIERTISKI----------------------------------KGLVRAPQVYILPPPAEQLSRKDVSLTC 139 (218)
T ss_dssp EEEETTCSSCEEEEECCC----------------------------------CCCCBCCEEEEECCCGGGTTSSEEEEEE
T ss_pred EEECCcCCCcceEEEeec----------------------------------CCCCCCCEEEEECCChHHhcCCceEEEE
Confidence 999987654222222110 0114577776665554444699999999
Q ss_pred EEeecCCCCe-EEEEeeCCEEccCCCceEE-EecCceE----EEEEccCCCCCcEEEEEEEEeCce
Q psy2145 206 RLIPVSDNTM-KVEWFHNNVPIKSGSRFTE-TNNFGFV----ALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 206 ~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~-~~~~~~~----~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
.+.+ ..|.+ .|.|+|||..+........ ...+|.+ .|.|.....+|.|.|+|.|.|...
T Consensus 140 ~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l 204 (218)
T 2rgs_A 140 LVVG-FNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL 204 (218)
T ss_dssp EEEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred EEEe-eeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence 9953 25554 9999999998854221111 1223321 355665555679999999999654
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=163.21 Aligned_cols=180 Identities=13% Similarity=0.186 Sum_probs=118.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe---e-------------ccCcEEEEee--CCeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV---T-------------IGHRFRPIHD--FGYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l---~-------------~~~r~~~~~~--~~~~~L~I 112 (808)
+..|..+ .+.+|++++|.|.+.+...+.+.|.|||+ |..+ . ...|+.+..+ .+.++|.|
T Consensus 4 v~qp~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 82 (215)
T 1c5d_H 4 LLESGPG-LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKM 82 (215)
T ss_dssp EEEECCC-EECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEE
T ss_pred EEcCCCe-eecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEE
Confidence 3457777 89999999999999852223578999985 2221 1 1357776654 35679999
Q ss_pred cccCcCCCeeEEEEEEecCcc---eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 113 IDTIPEDSGTYTCRAVNLVGF---AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
.+++.+|+|.|.|.+.|..+. ....+.|.|.... ..+|.+...
T Consensus 83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------~~~P~i~~~ 128 (215)
T 1c5d_H 83 NSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ----------------------------------TTAPSVYPL 128 (215)
T ss_dssp SSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC----------------------------------CBCCCEEEE
T ss_pred CCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCC----------------------------------CCCCeEEec
Confidence 999999999999999986422 2234577775311 235655554
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCceEEE--EEccCCCCCcEEEEEEEEeCcee
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGFVAL--DIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L--~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
+....+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+........... +..++ .+.....+| |.|+|.|.|..|.
T Consensus 129 ~~~~~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~ 205 (215)
T 1c5d_H 129 APGCGDTTSSTVTLGCLVKG-YFPEPVTVTWNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASS 205 (215)
T ss_dssp CCCSSCCCCSSEEEEEEEEE-EBSSCCEEEEGGGTTCCSCCBCCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGT
T ss_pred cCChhhccCCcEEEEEEEee-eEcCCcEEEEccCCccCceEecCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCC
Confidence 43444678999999999963 33666 9999999876532111111122 33222 123444456 9999999998876
Q ss_pred EEEE
Q psy2145 267 AVTS 270 (808)
Q Consensus 267 ~~~~ 270 (808)
....
T Consensus 206 ~~~~ 209 (215)
T 1c5d_H 206 TKVD 209 (215)
T ss_dssp EEEE
T ss_pred ccEE
Confidence 5543
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=171.96 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=123.5
Q ss_pred cccCCCceEEEEEEeeCCC--CCcEEEEEECC--EecC-----------------CCCCeEEEe--eCcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGD--PTLKVEWFRNE--KPLE-----------------DSSRITTKH--DFGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~--P~~~v~W~k~g--~~l~-----------------~~~~~~~~~--~~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+. +.+.+.|+|.. ..+. ...|+.+.. ..+.++|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (280)
T 3fku_X 11 VKKPGSSVKVSCTS--SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRS 88 (280)
T ss_dssp EECTTCCEEEEEEE--CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCS
T ss_pred EECCCCcEEEEEEe--eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 68899999999999 454 66889999732 1110 124666663 34567899999999
Q ss_pred CCCEEEEEEEEeC---------CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 572 EDEGIYICKATNA---------LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 572 ~D~G~Y~C~a~N~---------~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
+|+|.|.|.+.|. .+.......|.|...+....... ......+|.+.+.+
T Consensus 89 ~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~---------------------~~~~~~~~~v~~~p 147 (280)
T 3fku_X 89 EDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGG---------------------SGGGGIQPGLTQPP 147 (280)
T ss_dssp TTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-----------------------------------CCCSBBCCS
T ss_pred hhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCC---------------------CCceEeeeEEEeCC
Confidence 9999999999997 12222345566654110000000 00000123333322
Q ss_pred CCCccccCCceEEEEEEEeeCC-CC-CeEEEEEE--CCEEcc------------CCCcEEEEEeCCEEEEEEccCCCCCc
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVG-DP-TMRFEWFV--NGVELK------------MGSRFHVQHDFGYVTLDITKCVPADS 706 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g-~P-~p~i~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~v~~~D~ 706 (808)
. ..+.+|++|+|.|.+ .+ .+ .+.+.||| .|..+. ...||.+..++...+|+|.+++.+|+
T Consensus 148 ~--~~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 223 (280)
T 3fku_X 148 S--VSKGLRQTATLTCTG--NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDE 223 (280)
T ss_dssp E--EEECTTCCEEEEEEC--CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred c--EEEecCCCEEEEEEe--cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHC
Confidence 2 468899999999999 56 44 48999998 333222 24678888788888999999999999
Q ss_pred EEEEEEEEeCCcc---eEEEEEEEEEeC
Q psy2145 707 GVYMCKAINRAGE---AVSSTSLKVKSK 731 (808)
Q Consensus 707 G~Y~C~A~N~~G~---~~~s~~l~V~~~ 731 (808)
|.|.|.|.|..+. ....+.|.|...
T Consensus 224 G~Y~C~~~~~~~~~~~~g~~t~l~V~~~ 251 (280)
T 3fku_X 224 ADYYCSTWDSSLSAVVFGGGTKLTVLGQ 251 (280)
T ss_dssp SEEEEEEEETTTTEEEEBCCCEEEEC--
T ss_pred EEEEEEEecCCCCceEECCCEEEEECCC
Confidence 9999999998732 222356777544
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=166.82 Aligned_cols=174 Identities=18% Similarity=0.280 Sum_probs=117.0
Q ss_pred cccCCCceEEEEEEeeCCCCC----cEEEEEEC--CEecC----------------CCCCeEEEee--CcEEEEEECCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPT----LKVEWFRN--EKPLE----------------DSSRITTKHD--FGYVAMDLSHVR 570 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~----~~v~W~k~--g~~l~----------------~~~~~~~~~~--~~~~~L~I~~v~ 570 (808)
.+.+|++|+|.|.+ .+.|. +.|.|+|+ |..+. ...|+.+..+ .+..+|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (228)
T 3bae_H 11 LLKPSQTLSLTCSF--SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD 88 (228)
T ss_dssp EECTTCCEEEEEEE--ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred eecCCCeEEEEEEE--eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence 68899999999999 67775 88999985 32211 1246666543 245789999999
Q ss_pred CCCCEEEEEEEEeCCe------e---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEee
Q psy2145 571 AEDEGIYICKATNALG------E---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQL 641 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G------~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~ 641 (808)
.+|+|.|.|.+.|..| . ....+.|.|...+. .+|.+...
T Consensus 89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~i~~~ 136 (228)
T 3bae_H 89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT--------------------------------TAPSVYPL 136 (228)
T ss_dssp GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC--------------------------------BCCEEEEE
T ss_pred cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC--------------------------------CCCEEEEe
Confidence 9999999999999765 2 11235666653110 13555443
Q ss_pred cCCCccccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCCcEEEEEeC---CEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 642 LTGTSEIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGSRFHVQHDF---GYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 642 ~~~~~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.+. ..+.+|+.++|.|.+ .|. |.| .|.|+++|..+.......+...+ ..+.|.|..+..+| |.|+|.|.|.
T Consensus 137 ~~~-~~~~~g~~~~l~C~~--~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~ 212 (228)
T 3bae_H 137 APV-CGDTTGSSVTLGCLV--KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHP 212 (228)
T ss_dssp CC------CCSEEEEEEEE--EEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEG
T ss_pred ccc-ccccCCCCEEEEEEE--ccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEEC
Confidence 322 246789999999999 565 877 99999999764211111111111 13469999988866 9999999999
Q ss_pred CcceEEEEEE
Q psy2145 717 AGEAVSSTSL 726 (808)
Q Consensus 717 ~G~~~~s~~l 726 (808)
.|.......+
T Consensus 213 ~~~~~~~~~~ 222 (228)
T 3bae_H 213 ASSTKVDKKI 222 (228)
T ss_dssp GGTEEEEEEC
T ss_pred CCCCCEEEEc
Confidence 9987655543
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=161.10 Aligned_cols=164 Identities=16% Similarity=0.299 Sum_probs=116.5
Q ss_pred cccCCCceEEEEEEeeCCC--CCcEEEEEECC--Eec-------------------CCCCCeEEEee--CcEEEEEECCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGD--PTLKVEWFRNE--KPL-------------------EDSSRITTKHD--FGYVAMDLSHV 569 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~--P~~~v~W~k~g--~~l-------------------~~~~~~~~~~~--~~~~~L~I~~v 569 (808)
.+.+|++|+|.|.+ .+. +.+.|.|||.. ..+ ....|+.+..+ .+.++|.|.++
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 88 (221)
T 3m8o_H 11 LVQPGGSLKLSCAA--SGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL 88 (221)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred EEcCCCCEEEEEEc--ccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence 58899999999999 453 36789999732 111 01256766644 45678999999
Q ss_pred CCCCCEEEEEEEEeCC--eeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 570 RAEDEGIYICKATNAL--GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~--G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
+.+|+|.|.|.+.|.. ........|.|...+. .+|.+....... .
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~p~v~~~~~~~-~ 135 (221)
T 3m8o_H 89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP--------------------------------TSPKVFPLSLCS-T 135 (221)
T ss_dssp CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC--------------------------------BCCEEEEEECCS-C
T ss_pred CHHHCEEEEEEEECCChhheECCCEEEEEecCCC--------------------------------CCCeEEEecCcc-c
Confidence 9999999999999874 2222334566653211 236555333322 2
Q ss_pred ccCCceEEEEEEEeeCC-CCC--eEEEEEECCEEcc----------CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 648 IMEGQSAHYDCRVVPVG-DPT--MRFEWFVNGVELK----------MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g-~P~--p~i~W~~~g~~l~----------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
.+|+.++|.|.+ .| .|. +.|.|++||..+. .+.+|.+. +.|.|..+..+|+|.|+|.|.
T Consensus 136 -~~g~~v~L~C~~--~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~-----s~L~i~~~~~~d~g~ytC~v~ 207 (221)
T 3m8o_H 136 -QPDGNVVIACLV--QGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS-----SQLTLPATQCLAGKSVTCHVK 207 (221)
T ss_dssp -CCTTEEEEEEEE--EEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEE-----EEEEEEGGGSCTTCEEEEEEE
T ss_pred -ccCCCEEEEEEE--EeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEE-----EEEEECHHHcCCCCeEEEEEE
Confidence 789999999999 56 776 5999999998772 33444433 369999999999999999999
Q ss_pred eCCcceE
Q psy2145 715 NRAGEAV 721 (808)
Q Consensus 715 N~~G~~~ 721 (808)
|..|...
T Consensus 208 ~~~~~~~ 214 (221)
T 3m8o_H 208 HYTNPSQ 214 (221)
T ss_dssp ETTSCCE
T ss_pred ECCCCce
Confidence 9987643
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=162.09 Aligned_cols=178 Identities=19% Similarity=0.294 Sum_probs=116.6
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC----------------CCCCeEEEee--CcEEEEEECCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE----------------DSSRITTKHD--FGYVAMDLSHVRAE 572 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~----------------~~~~~~~~~~--~~~~~L~I~~v~~~ 572 (808)
.+.+|++|+|.|.+ .+.+ .+.+.|||.. ..+. ...|+.+..+ .+.++|.|.+++.+
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (232)
T 1dn0_B 11 LLKPSETLSLTCAV--YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (232)
T ss_dssp EECTTSCEEEEEEE--ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EEeCCCcEEEEEEE--ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence 58899999999999 5554 6789999842 2110 1357776653 35678999999999
Q ss_pred CCEEEEEEEEe--CCee----EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCc
Q psy2145 573 DEGIYICKATN--ALGE----AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTS 646 (808)
Q Consensus 573 D~G~Y~C~a~N--~~G~----~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 646 (808)
|+|.|.|.+.+ ..|. ....+.|.|...+. .+|.+...... .
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~v~~~~p~-~ 135 (232)
T 1dn0_B 89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA--------------------------------SAPTLFPLVSC-E 135 (232)
T ss_dssp GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC--------------------------------BCCEEEEEECC--
T ss_pred cCEEEEEEEecCCcCCchhhhcccceEEEEccCCC--------------------------------CCCceEEeccc-c
Confidence 99999999984 2121 11235677764211 13554432222 2
Q ss_pred cccCC-ceEEEEEEEeeCCC-CCe-EEEEEE-CCEEccCCCcEEEEEeCC----EEEEEEccCCC--CCcEEEEEEEEeC
Q psy2145 647 EIMEG-QSAHYDCRVVPVGD-PTM-RFEWFV-NGVELKMGSRFHVQHDFG----YVTLDITKCVP--ADSGVYMCKAINR 716 (808)
Q Consensus 647 ~v~~G-~~v~l~C~v~~~g~-P~p-~i~W~~-~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~--~D~G~Y~C~A~N~ 716 (808)
.+.+| +.++|.|.+ .|. |.| .|.|++ ||..|.....+....+++ .+.|.|..... +|.|.|+|.|.|.
T Consensus 136 ~~~~g~~~v~L~C~~--~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~ 213 (232)
T 1dn0_B 136 NSPSDTSSVAVGCLA--QDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHP 213 (232)
T ss_dssp -----CCSEEEEEEE--EEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECT
T ss_pred ccCCCCCcEEEEEEE--EEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeC
Confidence 35578 999999999 464 876 999999 999875400000000112 24789998887 8999999999999
Q ss_pred CcceEEEEEEEEE
Q psy2145 717 AGEAVSSTSLKVK 729 (808)
Q Consensus 717 ~G~~~~s~~l~V~ 729 (808)
.|.......|.|.
T Consensus 214 ~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 214 NGNKEKNVPLPVI 226 (232)
T ss_dssp TCCEEEEEECCC-
T ss_pred CCCcceeEecCCC
Confidence 9988777776654
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-17 Score=166.42 Aligned_cols=198 Identities=14% Similarity=0.176 Sum_probs=128.8
Q ss_pred eecCceeecCCCeEEEEEEEeecCCC--CeEEEEeeCC--EEcc-----------------CCCceEEEe--cCceEEEE
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHNN--VPIK-----------------SGSRFTETN--NFGFVALD 244 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~g--~~l~-----------------~~~~~~~~~--~~~~~~L~ 244 (808)
..+..+.+.+|++|+|.|.+. +.+ .+.+.|||++ ..+. ...|+.+.. ..+..+|.
T Consensus 27 ~~p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 104 (291)
T 2gki_A 27 QQSGPELVKPGASVKMSCKAS--GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYME 104 (291)
T ss_dssp EECCCEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred EcCCcEEecCCCCEEEEEecc--CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence 355678899999999999984 554 5789999952 2110 123454433 23466899
Q ss_pred EccCCCCCcEEEEEEEEeCc-e--e--EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec
Q psy2145 245 IMQCLPEDSGVYTCRAVNAL-G--Q--AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT 319 (808)
Q Consensus 245 I~~~~~~D~G~Y~C~a~n~~-g--~--~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~ 319 (808)
|.+++.+|+|.|.|.+.|.. | . ....+.|.|......... ... . .....++.+.
T Consensus 105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~---~~~-----------------~-~~~~~~~~v~ 163 (291)
T 2gki_A 105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSG---GGG-----------------S-GGGGSDLVMS 163 (291)
T ss_dssp ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC-------------------------------------CCCEE
T ss_pred ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccc---ccc-----------------C-CCCCccceEE
Confidence 99999999999999999974 2 1 112356777541000000 000 0 0001234555
Q ss_pred cCCCceEeecCCeEEEEEEEeecCCCcc------EEEEEEC--CEecc------------CCCcEEEEeeCcEEEEEEcc
Q psy2145 320 QPMRDIHVAENQAAHFEARLIPVGDSKL------KVTWLRN--GVPIQ------------ASNRVSTMHDFGYVALNFKY 379 (808)
Q Consensus 320 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~------~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~ 379 (808)
..+....+.+|+.++|.|.+ .+.+.+ .+.|+|+ |..+. ...++....++...+|.|.+
T Consensus 164 ~~p~~~~v~~G~~v~L~C~~--~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 241 (291)
T 2gki_A 164 QSPSSLAVSAGEKVTMSCKS--SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISS 241 (291)
T ss_dssp CSCSEEEEETTSCEEEEEEE--SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred cCCCEEEEcCCCcEEEEEEc--CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECC
Confidence 56667789999999999998 677765 8999996 32111 13566665566667899999
Q ss_pred CCCCCCeEEEEEEEcCCcceEE-EEEEEEEec
Q psy2145 380 TYPEDSGTYTCRAVNELGEAVT-SSTLFVESK 410 (808)
Q Consensus 380 v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~ 410 (808)
+..+|+|.|+|.|.|.....-. -..|.|...
T Consensus 242 v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~ 273 (291)
T 2gki_A 242 VQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHH 273 (291)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred CCHHHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence 9999999999999985432222 255666654
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=169.62 Aligned_cols=175 Identities=17% Similarity=0.279 Sum_probs=120.7
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEE--CCEec------------CCC----CCeEEEee-CcEEEE
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFR--NEKPL------------EDS----SRITTKHD-FGYVAM 564 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k--~g~~l------------~~~----~~~~~~~~-~~~~~L 564 (808)
+.+..++..+ .+.+|++|+|.|.+ . .+.+.|.|+| .+..+ ... .|+.+..+ .+.++|
T Consensus 27 ~~v~~~p~~v-~v~~G~~v~L~C~~--~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL 102 (268)
T 3pl6_D 27 AGVSQTPSNK-VTEKGKYVELRCDP--I-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTL 102 (268)
T ss_dssp SSCBCCCSEE-EEETTCCEEEEEBC--B-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEE
T ss_pred ceeEeCCCEE-EecCCCCEEEEEEe--C-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEE
Confidence 3444444444 68899999999997 3 6788999999 22211 111 56666542 345689
Q ss_pred EECCCCCCCCEEEEEEEEeC--CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeec
Q psy2145 565 DLSHVRAEDEGIYICKATNA--LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLL 642 (808)
Q Consensus 565 ~I~~v~~~D~G~Y~C~a~N~--~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~ 642 (808)
.|.+++.+|+|.|.|.+.|. .+.......|.|...... ..+|.+....
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------~~~P~v~~~~ 152 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN------------------------------VFPPEVAVFE 152 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGG------------------------------CBCCEEEEEC
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCccc------------------------------ccCCceEEeC
Confidence 99999999999999999984 334444456777642111 1246555444
Q ss_pred CCCccccCCceEEEEEEEeeCCCCC-e-EEEEEECCEEccCCC----------------cEEEEEeCCEEEEEEccCCCC
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVGDPT-M-RFEWFVNGVELKMGS----------------RFHVQHDFGYVTLDITKCVPA 704 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g~P~-p-~i~W~~~g~~l~~~~----------------~~~~~~~~~~~~L~I~~v~~~ 704 (808)
.....+.+|+.++|.|.+ .|.|+ + .|.|+|||+++..+. .|.+ .+.|.|.....+
T Consensus 153 ~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~s~l~i~~~~~~ 225 (268)
T 3pl6_D 153 PSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSL-----SSRLRVSATFWQ 225 (268)
T ss_dssp CCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEE-----EEEEEEEHHHHS
T ss_pred CCcccccCCCceEEEEEE--CcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEE-----EEEEEEcHHHhc
Confidence 444457789999999999 56444 3 999999999986532 2222 136788888777
Q ss_pred C-cEEEEEEEEeCCcc
Q psy2145 705 D-SGVYMCKAINRAGE 719 (808)
Q Consensus 705 D-~G~Y~C~A~N~~G~ 719 (808)
| +|.|+|.|.|....
T Consensus 226 d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 226 NPRNHFRCQVQFYGLS 241 (268)
T ss_dssp CTTCEEEEEEEECCBC
T ss_pred cCCCEEEEEEEcCCCC
Confidence 7 99999999998654
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=166.72 Aligned_cols=176 Identities=18% Similarity=0.234 Sum_probs=121.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--------------CCEEeecc----CcEEEEee-CCeEEEEEc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--------------NGRPVTIG----HRFRPIHD-FGYVALDII 113 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--------------~g~~l~~~----~r~~~~~~-~~~~~L~I~ 113 (808)
...|..+ .+.+|++++|.| .. +.+.+.|.||| ++..+..+ .|+.+..+ .+.++|.|.
T Consensus 6 ~~~p~~v-~v~~G~~v~L~C-~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 6 LQIPSHQ-IIDMGQMVTLNC-DP--VSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp EEECSEE-EEETTCCEEEEE-EC--CTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred EeCCceE-EecCCCCEEEEE-Ec--CCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 4456667 899999999999 43 56788999999 33333222 67776653 456799999
Q ss_pred ccCcCCCeeEEEEEEecC----cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEE-e
Q psy2145 114 DTIPEDSGTYTCRAVNLV----GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFT-T 188 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-~ 188 (808)
+++.+|+|.|+|.+.+.. +.....+.|.|..... ...+|.+. .
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~p~~~~~ 129 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK--------------------------------NVFPPEVAVF 129 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG--------------------------------GCBCCEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccC--------------------------------CCCCceEEEe
Confidence 999999999999999532 2233445666653110 02455554 3
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEe-------cCce----EEEEEccCCCCC-cEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETN-------NFGF----VALDIMQCLPED-SGV 255 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~-------~~~~----~~L~I~~~~~~D-~G~ 255 (808)
.+....+.+|+.++|.|.+.+ ..|. ..|.|++||..+..+.+..... .++. ..|.|.....+| .|.
T Consensus 130 ~~~~~~~~~g~~v~l~C~~~g-~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ 208 (245)
T 4ei6_B 130 EPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH 208 (245)
T ss_dssp CCCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCE
T ss_pred CCCcccccCCCceEEEEEEee-EeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCe
Confidence 445556778999999999964 2343 4899999999987643221110 1222 248888888888 999
Q ss_pred EEEEEEeCce
Q psy2145 256 YTCRAVNALG 265 (808)
Q Consensus 256 Y~C~a~n~~g 265 (808)
|+|.|.|...
T Consensus 209 ytC~v~~~~l 218 (245)
T 4ei6_B 209 FRCQVQFYGL 218 (245)
T ss_dssp EEEEEEECCB
T ss_pred EEEEEEECCC
Confidence 9999998543
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=164.36 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=118.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeC--CEEee-----------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKN--GRPVT-----------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~--g~~l~-----------------~~~r~~~~~~--~~~~~ 109 (808)
+..|..+ .+.+|++|+|.|.+.+ .+ .+.|.|||+ |..+. ...|+.+..+ .+..+
T Consensus 10 ~~~p~~~-~v~~G~~v~L~C~~~~--~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 86 (261)
T 2xqy_G 10 LQQPGAE-LVKPGASVKMSCKASG--YSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVY 86 (261)
T ss_dssp EECCSEE-EECTTCCEEEEEEEES--SCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred EECCCCE-EEcCCCCEEEEEEeCC--cccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEE
Confidence 4557777 8999999999999984 34 578999986 32211 1357777654 36679
Q ss_pred EEEcccCcCCCeeEEEEEEecCcce---EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGFA---EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
|.|.+++.+|+|.|.|.+.|..+.. ...+.|.|.... ..+|.+
T Consensus 87 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------~~~P~v 132 (261)
T 2xqy_G 87 IQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK----------------------------------TTAPSV 132 (261)
T ss_dssp EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC----------------------------------CBCCEE
T ss_pred EEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC----------------------------------CCCCeE
Confidence 9999999999999999999864311 123567665311 235655
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCc---eEEEEEccCCCCCcEEEEEEEEe
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFG---FVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
........+.+|+.++|.|.+.+ ..|.+ .|.|++++..+...........+. ...|.|..+..+| |.|+|.|.|
T Consensus 133 ~~~~p~~~v~~g~~v~L~C~~~g-~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n 210 (261)
T 2xqy_G 133 YPLAPVCGDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAH 210 (261)
T ss_dssp EEECCCCC--CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEE
T ss_pred EEeCCCccccCCCcEEEEEEEEe-EeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEE
Confidence 54433334678999999999953 23554 999999998753211001111111 2369999998888 999999999
Q ss_pred Ccee
Q psy2145 263 ALGQ 266 (808)
Q Consensus 263 ~~g~ 266 (808)
....
T Consensus 211 ~~~~ 214 (261)
T 2xqy_G 211 PASS 214 (261)
T ss_dssp GGGT
T ss_pred CCCC
Confidence 6554
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=164.12 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=120.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--------------CCEEeec---cCcEEEEee-CCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--------------NGRPVTI---GHRFRPIHD-FGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--------------~g~~l~~---~~r~~~~~~-~~~~~L~I~~ 114 (808)
...|..+ .+.+|++|+|.|.+. .+.+.|.||| ++..... ..|+.+..+ .+.++|.|.+
T Consensus 6 ~~~p~~v-~v~~G~~v~L~C~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 81 (240)
T 3q5y_A 6 VQSPRHI-IKEKGGRSVLTCIPI---SGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 81 (240)
T ss_dssp EEECSEE-EEETTCCEEEEEECC---TTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred ccCccee-eecCCCcEEEEEEeC---CCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence 3456666 899999999999986 3677999999 2222221 257776553 4567999999
Q ss_pred cCcCCCeeEEEEEEec---CcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe-ec
Q psy2145 115 TIPEDSGTYTCRAVNL---VGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT-SL 190 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~ 190 (808)
++.+|+|.|+|.+.+. .......+.|.|..... ...+|.+.. .+
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~p~~~~~~~ 129 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR--------------------------------NVTPPKVSLFEP 129 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGG--------------------------------GCBCCEEEEECC
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEecccc--------------------------------CCCCCeeEEeCC
Confidence 9999999999999832 12223345666653110 134565554 44
Q ss_pred CceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceE---EEecCceE----EEEEccCCCCC-cEEEEEEEE
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFT---ETNNFGFV----ALDIMQCLPED-SGVYTCRAV 261 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~---~~~~~~~~----~L~I~~~~~~D-~G~Y~C~a~ 261 (808)
....+.+|+.++|.|.+.+ ..|.+ .+.|+|||.++..+.+.. ....++.+ .|.|.....+| .|.|+|.|.
T Consensus 130 ~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~ 208 (240)
T 3q5y_A 130 SKAEIANKQKATLVCLARG-FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQ 208 (240)
T ss_dssp CHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEE
T ss_pred chhhcccCCceEEEEEEee-EECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEE
Confidence 5556778999999999964 24544 899999999987543221 12223332 48999998888 779999999
Q ss_pred eCce
Q psy2145 262 NALG 265 (808)
Q Consensus 262 n~~g 265 (808)
|...
T Consensus 209 ~~~~ 212 (240)
T 3q5y_A 209 FHGL 212 (240)
T ss_dssp ECCB
T ss_pred cCCC
Confidence 8644
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=164.93 Aligned_cols=184 Identities=17% Similarity=0.321 Sum_probs=124.8
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC--Eec--------------C---CCCCeEEEee-CcEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPL--------------E---DSSRITTKHD-FGYV 562 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l--------------~---~~~~~~~~~~-~~~~ 562 (808)
.+.+...+..+ .+.+|++|+|.|.+ .+.|.+.|.|+|++ ..+ . ...|+.+..+ .+..
T Consensus 24 ~~~v~~~p~~v-~v~~G~~v~L~C~~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 100 (279)
T 2wbj_D 24 GAVVSQHPSWV-ISKSGTSVKIECRS--LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLS 100 (279)
T ss_dssp CCCEEEECSEE-EEETTSCEEEEEEE--SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEE
T ss_pred cceEEeCCCeE-EecCCCeEEEEEEe--CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEE
Confidence 34555555554 68999999999999 78899999999864 111 0 1356766643 4567
Q ss_pred EEEECCCCCCCCEEEEEEEEeCCe------eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCC
Q psy2145 563 AMDLSHVRAEDEGIYICKATNALG------EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKP 636 (808)
Q Consensus 563 ~L~I~~v~~~D~G~Y~C~a~N~~G------~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P 636 (808)
+|.|.+++.+|+|.|.|.|.|..| .....+.|.|..... ...+|
T Consensus 101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~P 150 (279)
T 2wbj_D 101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK------------------------------NVFPP 150 (279)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG------------------------------GCBCC
T ss_pred EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC------------------------------CCCCC
Confidence 899999999999999999999432 112235677764211 01246
Q ss_pred eEEeecCCCccccCCceEEEEEEEeeCCC-CC-eEEEEEECCEEccCCCcEE---EE-----EeCC---EEEEEEccCCC
Q psy2145 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGD-PT-MRFEWFVNGVELKMGSRFH---VQ-----HDFG---YVTLDITKCVP 703 (808)
Q Consensus 637 ~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~~---~~-----~~~~---~~~L~I~~v~~ 703 (808)
.+.........+.+|+.++|.|.+ .|. |. +.|.|+|||++|..+.... .. .++. .+.|.|.....
T Consensus 151 ~v~~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 228 (279)
T 2wbj_D 151 EVAVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW 228 (279)
T ss_dssp EEEEEECCHHHHHHHSCCEEEEEE--EEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTT
T ss_pred EEEEECCCcccccCCCceEEEEEE--eeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHh
Confidence 665443333456689999999999 565 54 7999999999987542211 00 1111 23588888777
Q ss_pred CC-cEEEEEEEEeCCcceE
Q psy2145 704 AD-SGVYMCKAINRAGEAV 721 (808)
Q Consensus 704 ~D-~G~Y~C~A~N~~G~~~ 721 (808)
.| .|.|+|.|.|......
T Consensus 229 ~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 229 QNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp TCTTCEEEEEEEECCBCTT
T ss_pred ccCCCEEEEEEEeCCCCCC
Confidence 64 7889999999876543
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=167.93 Aligned_cols=177 Identities=13% Similarity=0.189 Sum_probs=105.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeCC--EE---ee--------------ccCcEEEEee--CCeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKNG--RP---VT--------------IGHRFRPIHD--FGYVA 109 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~g--~~---l~--------------~~~r~~~~~~--~~~~~ 109 (808)
+.+|..+ .+.+|++|+|.|.+.+ .+ .+.+.|||.. .. |. ...|+.+..+ .+.++
T Consensus 4 l~qp~~~-~v~~G~~v~L~C~~~~--~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (257)
T 3bn9_D 4 LVQSGGG-LVKPGGSLRLSCAASG--FTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLY 80 (257)
T ss_dssp EEEECCE-EECTTCEEEEEEEEES--SCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEE
T ss_pred EEccCCE-EEcCCCcEEEEEEecc--ccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEE
Confidence 4456677 8999999999999984 33 5789999843 21 10 1357777665 46679
Q ss_pred EEEcccCcCCCeeEEEEEEecCcc-------------eEEEEEEEEecCCCccccccccccceeeeeecccccccccccc
Q psy2145 110 LDIIDTIPEDSGTYTCRAVNLVGF-------------AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176 (808)
Q Consensus 110 L~I~~~~~~D~G~Y~C~a~n~~g~-------------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (808)
|.|.+++.+|+|.|.|.+.|..|. ....+.|.|....
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~------------------------------ 130 (257)
T 3bn9_D 81 LQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS------------------------------ 130 (257)
T ss_dssp EEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC------------------------------
T ss_pred EEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC------------------------------
Confidence 999999999999999999987651 1123467775311
Q ss_pred ccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCce----EEEEEccCCCC
Q psy2145 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGF----VALDIMQCLPE 251 (808)
Q Consensus 177 ~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~----~~L~I~~~~~~ 251 (808)
..+|.+........+.+|+.++|.|.+.+ ..|.+ .|.|+++|..+...........+|. ..|.|.++..+
T Consensus 131 ----~~~P~v~~~~p~~~~~~g~~v~L~C~~~g-~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~ 205 (257)
T 3bn9_D 131 ----TKGPSVFPLAPSSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG 205 (257)
T ss_dssp ----CBCCEECCCCC-----------CCCEEEE-EBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC-----
T ss_pred ----CcCCcEEEecCcccccCCCcEEEEEEEee-EECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccC
Confidence 23555544333334678999999999963 33655 9999999987432110011122221 35888888877
Q ss_pred CcEEEEEEEEeCceeEE
Q psy2145 252 DSGVYTCRAVNALGQAV 268 (808)
Q Consensus 252 D~G~Y~C~a~n~~g~~~ 268 (808)
| |.|+|.|.|......
T Consensus 206 ~-g~YtC~v~n~~~~~~ 221 (257)
T 3bn9_D 206 T-QTYICNVNHKPSNTK 221 (257)
T ss_dssp ---CEEEEEEEGGGTEE
T ss_pred C-CeEEEEEEecCCCcC
Confidence 8 999999999654433
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=166.94 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=120.0
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------------eecc----CcEEEEee-CCeEEEEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------------VTIG----HRFRPIHD-FGYVALDI 112 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------------l~~~----~r~~~~~~-~~~~~L~I 112 (808)
+...|..+ .+.+|++++|.|.+. .+.+.|.||| .+.. ...+ .|+.+..+ .+..+|.|
T Consensus 29 v~~~p~~v-~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 29 VSQTPSNK-VTEKGKYVELRCDPI---SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp CBCCCSEE-EEETTCCEEEEEBCB---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred eEeCCCEE-EecCCCCEEEEEEeC---CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34456666 899999999999986 4677999999 2221 1111 67776653 45679999
Q ss_pred cccCcCCCeeEEEEEEec--CcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe-e
Q psy2145 113 IDTIPEDSGTYTCRAVNL--VGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT-S 189 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~ 189 (808)
.+++.+|+|.|+|.+.|. .+.......|.|..... ...+|.+.. .
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~P~v~~~~ 152 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLK--------------------------------NVFPPEVAVFE 152 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGG--------------------------------GCBCCEEEEEC
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcc--------------------------------cccCCceEEeC
Confidence 999999999999999974 23333445676653211 123565544 4
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE-------EecCce----EEEEEccCCCCC-cEEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE-------TNNFGF----VALDIMQCLPED-SGVYT 257 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~-------~~~~~~----~~L~I~~~~~~D-~G~Y~ 257 (808)
+....+.+|+.++|.|.+.+...++..|.|+|||..+..+.+... ...++. ..|.|.....+| .|.|+
T Consensus 153 ~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~Yt 232 (268)
T 3pl6_D 153 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFR 232 (268)
T ss_dssp CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEE
T ss_pred CCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEE
Confidence 555667789999999999642222339999999999865422110 001121 257888887777 99999
Q ss_pred EEEEeCce
Q psy2145 258 CRAVNALG 265 (808)
Q Consensus 258 C~a~n~~g 265 (808)
|.|.|...
T Consensus 233 C~v~~~~l 240 (268)
T 3pl6_D 233 CQVQFYGL 240 (268)
T ss_dssp EEEEECCB
T ss_pred EEEEcCCC
Confidence 99998643
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=168.07 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=112.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eeec-c-------------CcEEEE--eeCCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVTI-G-------------HRFRPI--HDFGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~~-~-------------~r~~~~--~~~~~~~L~ 111 (808)
...|.++ .+.+|++|+|.|.+. +.+.+.+.|||. +. .+.. . .|+... ...+.++|.
T Consensus 6 ~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (259)
T 3omz_A 6 EGRTKSV-IRQTGSSAEITCDLA--EGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI 82 (259)
T ss_dssp -----CE-EEETTCCEEEECCC-------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred ccCCcee-EecCCCcEEEEEEEc--cCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence 3456677 899999999999998 466789999992 21 1111 0 022221 123445799
Q ss_pred EcccCcCCCeeEEEEEEecCc---ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG---FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
|.+++.+|+|.|.|.+.|..+ .....+.|.|........... ........+|.+..
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~---------------------~~~~~~~~~~~v~~ 141 (259)
T 3omz_A 83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAK---------------------KDAAKKDGAQKVTQ 141 (259)
T ss_dssp ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC---------------------------------------CEEEC
T ss_pred ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccc---------------------cccccccCCeeeEE
Confidence 999999999999999998766 233446677764321000000 00000022577788
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--EEcc------------CCCceEEEe--cCceEEEEEccCCCCC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--VPIK------------SGSRFTETN--NFGFVALDIMQCLPED 252 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~~l~------------~~~~~~~~~--~~~~~~L~I~~~~~~D 252 (808)
.+..+.+.+|++|+|.|.+.+ ..+.+.+.|||++ ..+. ...++.+.. .....+|.|.+++.+|
T Consensus 142 ~p~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 220 (259)
T 3omz_A 142 AQSSVSMPVRKAVTLNCLYET-SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLED 220 (259)
T ss_dssp CCCCEEEETTCCEEECCEEEC-CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGG
T ss_pred eCCEEEEcCCCCEEEEEECCC-ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhH
Confidence 888899999999999998842 3478899999943 1110 123444442 2234579999999999
Q ss_pred cEEEEEEEEe
Q psy2145 253 SGVYTCRAVN 262 (808)
Q Consensus 253 ~G~Y~C~a~n 262 (808)
+|.|.|.|.+
T Consensus 221 sG~Y~C~~~~ 230 (259)
T 3omz_A 221 SAKYFCALGE 230 (259)
T ss_dssp CSEEEEEEES
T ss_pred CEEEEEEEeC
Confidence 9999999985
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=166.35 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=112.3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc---cC-C-------------CceEE--EecCceE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI---KS-G-------------SRFTE--TNNFGFV 241 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l---~~-~-------------~~~~~--~~~~~~~ 241 (808)
+|.+...+..+.+.+|++|+|.|.+ .+.+.+.+.|||. +... .. . .++.. ....+..
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDL--AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL 79 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred ccccccCCceeEecCCCcEEEEEEE--ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence 4566777888999999999999999 5677889999992 2111 00 0 01111 1122344
Q ss_pred EEEEccCCCCCcEEEEEEEEeCce---eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCee
Q psy2145 242 ALDIMQCLPEDSGVYTCRAVNALG---QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVF 318 (808)
Q Consensus 242 ~L~I~~~~~~D~G~Y~C~a~n~~g---~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~ 318 (808)
+|.|.+++.+|+|.|.|.+.|..+ .....+.|.|........... ........+|.+
T Consensus 80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~--------------------~~~~~~~~~~~v 139 (259)
T 3omz_A 80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAK--------------------KDAAKKDGAQKV 139 (259)
T ss_dssp EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC--------------------------------------CEE
T ss_pred EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccc--------------------cccccccCCeee
Confidence 799999999999999999999766 333456777765320000000 000000124567
Q ss_pred ccCCCceEeecCCeEEEEEEEeecC-CCccEEEEEECC--Eecc------------CCCcEEEEe--eCcEEEEEEccCC
Q psy2145 319 TQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNG--VPIQ------------ASNRVSTMH--DFGYVALNFKYTY 381 (808)
Q Consensus 319 ~~~~~~~~v~~G~~~~l~C~~~~~g-~p~~~v~W~~~g--~~l~------------~~~~~~~~~--~~~~~~L~I~~v~ 381 (808)
...+....+.+|+.++|.|.+ .+ .+.+.+.|+|++ ..+. ...++.+.. ......|.|.++.
T Consensus 140 ~~~p~~~~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 217 (259)
T 3omz_A 140 TQAQSSVSMPVRKAVTLNCLY--ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQ 217 (259)
T ss_dssp ECCCCCEEEETTCCEEECCEE--ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCC
T ss_pred EEeCCEEEEcCCCCEEEEEEC--CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCC
Confidence 777778889999999999987 45 478999999943 1110 123444432 2234469999999
Q ss_pred CCCCeEEEEEEEcC
Q psy2145 382 PEDSGTYTCRAVNE 395 (808)
Q Consensus 382 ~~d~G~Y~C~a~n~ 395 (808)
.+|+|.|.|.+.+.
T Consensus 218 ~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 218 LEDSAKYFCALGES 231 (259)
T ss_dssp GGGCSEEEEEEESC
T ss_pred hhHCEEEEEEEeCc
Confidence 99999999999853
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=162.95 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=117.6
Q ss_pred cccCCCceEEEEEEeeCCC--CCcEEEEEECC--EecC-----------------CCCCeEEEeeC--cEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGD--PTLKVEWFRNE--KPLE-----------------DSSRITTKHDF--GYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~--P~~~v~W~k~g--~~l~-----------------~~~~~~~~~~~--~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+. +.+.|.|+|.. ..+. ...|+.+..+. +.++|.|.+++.
T Consensus 12 ~~~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 89 (242)
T 1hxm_B 12 TKTLSKTARLECVV--SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK 89 (242)
T ss_dssp EEETTCCEEEEEEE--ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred EecCCCcEEEEEEe--CCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence 68899999999999 453 67889999842 2110 24577666543 467899999999
Q ss_pred CCCEEEEEEEEeCCe-----e--EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCC
Q psy2145 572 EDEGIYICKATNALG-----E--AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTG 644 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G-----~--~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~ 644 (808)
+|+|.|.|.+.|..+ . ......|.|...+... ..+|........
T Consensus 90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~-----------------------------~~~p~~~v~~p~ 140 (242)
T 1hxm_B 90 QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDA-----------------------------DVSPKPTIFLPS 140 (242)
T ss_dssp GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCS-----------------------------CCSCBCCCCCCC
T ss_pred ccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCC-----------------------------CcCCCceEECCC
Confidence 999999999998631 1 1123567776532100 001111111122
Q ss_pred CccccCCceEEEEEEEeeCCC-CC-eEEEEEECCE-EccCCCcE-EEEEeCC---EEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGD-PT-MRFEWFVNGV-ELKMGSRF-HVQHDFG---YVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~-P~-p~i~W~~~g~-~l~~~~~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
...+.+|+.++|.|.+ .|. |. +.|.|++||. .+..+..- ....++. .+.|.|..+.. | |.|+|.|.|..
T Consensus 141 ~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~ 216 (242)
T 1hxm_B 141 IAETKLQKAGTYLCLL--EKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHEN 216 (242)
T ss_dssp GGGGGSSSCEEEEEEE--EEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETT
T ss_pred hhhcccCCCceEEEEE--eeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCC
Confidence 2456789999999999 565 64 8999999997 56432100 0111111 24799988775 5 99999999999
Q ss_pred cceEEEEEEEE
Q psy2145 718 GEAVSSTSLKV 728 (808)
Q Consensus 718 G~~~~s~~l~V 728 (808)
|....+..|.+
T Consensus 217 ~~~~~~~~~~~ 227 (242)
T 1hxm_B 217 NKNGVDQEIIF 227 (242)
T ss_dssp SGGGSCEEEEE
T ss_pred CCCCceeEeec
Confidence 98766666655
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=138.05 Aligned_cols=95 Identities=21% Similarity=0.442 Sum_probs=85.4
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC--CCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS--SRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
..||.|...+.++ .+.+|+.+.|.|.+ .|.|.|.|+|+|||+.|... .++.+...++..+|.|.+++.+|+|.|+
T Consensus 3 ~~PP~i~~~p~~~-~v~~G~~~~l~C~~--~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 3 GIPPKIEALPSDI-SIDEGKVLTVACAF--TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp CEEEEECCCCSEE-EEETTSEEEEEEEE--EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred CCCCEEEeCCCcE-EEeCCCeEEEEEEE--EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEE
Confidence 3578998888876 68999999999999 79999999999999999765 3678888888889999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEe
Q psy2145 579 CKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~ 598 (808)
|.|.|..|..++++.|.|+.
T Consensus 80 C~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 80 LSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCCEEEEEEEEEEEE
Confidence 99999999999999999874
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=163.73 Aligned_cols=178 Identities=13% Similarity=0.147 Sum_probs=117.6
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCC--ceEEEEeCCEEe-eccCcEEEEeeCC----eEEEEEcccCcCCCeeEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSN--LKVEWFKNGRPV-TIGHRFRPIHDFG----YVALDIIDTIPEDSGTYT 124 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~--~~v~W~~~g~~l-~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~ 124 (808)
++..|..+ .+.+|+.++|.|.+.+. .|. ..|.|+++|..+ ............+ ..+|.|.++..+|+|.|+
T Consensus 16 ~~~~p~~~-~v~~G~~v~L~C~~~g~-~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~ 93 (231)
T 2w59_A 16 YAIPPSPG-ELYISLDAKLRCLVVNL-PSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFT 93 (231)
T ss_dssp EEECCCHH-HHHTSCCCEEEEEEEEE-SCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred EEeCcChh-hcccCCceEEEEEEeCc-cCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEE
Confidence 34567776 78899999999999862 453 499999999887 3322222111222 247999999999999999
Q ss_pred EEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEE
Q psy2145 125 CRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFE 204 (808)
Q Consensus 125 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~ 204 (808)
|.|.|..+... +.+.|.... ....+|.+...+.......|..++|.
T Consensus 94 C~~~~~~~~~~--~~~~v~~~~--------------------------------~~~~~P~v~v~~~~~~~~~~~~~~L~ 139 (231)
T 2w59_A 94 CTVQHEELPLP--LSKSVYRNT--------------------------------GPTTPPLIYPFAPHPEELSLSRVTLS 139 (231)
T ss_dssp EEEECTTCSSC--EEEEECCCC--------------------------------SCCBCCEEEEECCCGGGGGSSEEEEE
T ss_pred EEEEcCCCCCc--eEEEEecCC--------------------------------CCCcCCEEEEeCCCHHHhccCceEEE
Confidence 99999876533 334342110 01246666544332222345679999
Q ss_pred EEEeecCCCCeEEEEeeCCEEccCCCce----EEE--------ec-Cce---EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 205 CRLIPVSDNTMKVEWFHNNVPIKSGSRF----TET--------NN-FGF---VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 205 C~~~~~~~p~~~v~W~~~g~~l~~~~~~----~~~--------~~-~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
|.+.+...+.+.|.|+|||..+..+... ... .+ +.+ ..|.|.....+|.|.|+|+|.|...
T Consensus 140 C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l 216 (231)
T 2w59_A 140 CLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL 216 (231)
T ss_dssp EEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence 9996422235899999999998655311 111 22 221 3588888888899999999999654
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=147.26 Aligned_cols=164 Identities=12% Similarity=0.155 Sum_probs=112.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
..|...+.|.+|++++|.|.+ +.+.|.+.|+|++.+..+ .+.. .+.+...|.|.+++.+|+|.|.|.|.|..|.
T Consensus 11 ~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 84 (210)
T 1gsm_A 11 EPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQ--SDTGRSVLTVRNASLSAAGTRVCVGSCGGRT 84 (210)
T ss_dssp ESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEE--EESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred eCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEE--ecCCccEEEECccCcccCceEEEEEEeCCCc
Confidence 344441388999999999999 433343399999966444 2222 2355568999999999999999999999888
Q ss_pred eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCC
Q psy2145 134 AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN 213 (808)
Q Consensus 134 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p 213 (808)
....+.|+|+..+. .+.+.+. .+.+|+.+ |.|.+.+ ..|
T Consensus 85 ~~~~~~ltV~~~P~-------------------------------------~~~i~~~--~~~~g~~~-l~C~a~g-~~P 123 (210)
T 1gsm_A 85 FQHTVQLLVYAFPN-------------------------------------QLTVSPA--ALVPGDPE-VACTAHK-VTP 123 (210)
T ss_dssp EEEEEEEEEEBCCS-------------------------------------EEEEESS--SBCTTCCE-EEEEEEE-EBC
T ss_pred eEEEEEEEEEecCC-------------------------------------CcEEccc--eEEeCCce-EEEEeCC-CCC
Confidence 88889999974321 1222332 56788888 9999964 235
Q ss_pred ----CeEEEEeeCCEEccCCCceE--EE--------ecCce----EEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 214 ----TMKVEWFHNNVPIKSGSRFT--ET--------NNFGF----VALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 214 ----~~~v~W~~~g~~l~~~~~~~--~~--------~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
.++|.|||||.+|....... .. ..... .+|.+.....+|.+.|+|+|.+..
T Consensus 124 ~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L 192 (210)
T 1gsm_A 124 VDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRL 192 (210)
T ss_dssp CCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred CCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence 46999999999996442111 10 01111 235555666666689999999854
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=164.66 Aligned_cols=179 Identities=15% Similarity=0.215 Sum_probs=117.4
Q ss_pred CCee-eecCCCcccccCCCceEEEEEEeeCC-CCC--cEEEEEECCEec-CCCCCeEEEeeCc----EEEEEECCCCCCC
Q psy2145 503 RPVF-TKPLQNIDAVEEGKNAHFSCRLIPVG-DPT--LKVEWFRNEKPL-EDSSRITTKHDFG----YVAMDLSHVRAED 573 (808)
Q Consensus 503 ~P~f-~~~~~~~~~v~~G~~v~l~C~v~~~g-~P~--~~v~W~k~g~~l-~~~~~~~~~~~~~----~~~L~I~~v~~~D 573 (808)
+|.+ +.++... .+.+|+.++|.|.+ .| .|. ..|+|+++|+.+ ...........++ ...|.|.++..+|
T Consensus 12 ~P~v~~~~p~~~-~v~~G~~v~L~C~~--~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D 88 (231)
T 2w59_A 12 PIQLYAIPPSPG-ELYISLDAKLRCLV--VNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLS 88 (231)
T ss_dssp CCEEEEECCCHH-HHHTSCCCEEEEEE--EEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHT
T ss_pred CCEEEEeCcChh-hcccCCceEEEEEE--eCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccC
Confidence 4443 4444443 57899999999999 56 463 499999999887 4332222121222 2369999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 653 (808)
+|.|+|.|.|..+.... .+.|..... ...+|.+.........+ .|..
T Consensus 89 ~g~Y~C~~~~~~~~~~~--~~~v~~~~~------------------------------~~~~P~v~v~~~~~~~~-~~~~ 135 (231)
T 2w59_A 89 GERFTCTVQHEELPLPL--SKSVYRNTG------------------------------PTTPPLIYPFAPHPEEL-SLSR 135 (231)
T ss_dssp TCCEEEEEECTTCSSCE--EEEECCCCS------------------------------CCBCCEEEEECCCGGGG-GSSE
T ss_pred CCEEEEEEEcCCCCCce--EEEEecCCC------------------------------CCcCCEEEEeCCCHHHh-ccCc
Confidence 99999999998875333 333322100 01235544433322233 3567
Q ss_pred EEEEEEEeeCCC-C-CeEEEEEECCEEccCCCcEE----EE--------Ee-CCE---EEEEEccCCCCCcEEEEEEEEe
Q psy2145 654 AHYDCRVVPVGD-P-TMRFEWFVNGVELKMGSRFH----VQ--------HD-FGY---VTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 654 v~l~C~v~~~g~-P-~p~i~W~~~g~~l~~~~~~~----~~--------~~-~~~---~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
++|.|.+ .|. | .+.|.|+|||+.|..+.... .. .+ +.+ +.|.|.....+|.|.|+|.|.|
T Consensus 136 ~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n 213 (231)
T 2w59_A 136 VTLSCLV--RGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVH 213 (231)
T ss_dssp EEEEEEE--EEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEEC
T ss_pred eEEEEEE--EeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEc
Confidence 9999999 564 4 47999999999997654211 11 22 222 5688888888889999999999
Q ss_pred CCcc
Q psy2145 716 RAGE 719 (808)
Q Consensus 716 ~~G~ 719 (808)
....
T Consensus 214 ~~l~ 217 (231)
T 2w59_A 214 EALP 217 (231)
T ss_dssp TTST
T ss_pred CCCC
Confidence 9765
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=160.12 Aligned_cols=188 Identities=16% Similarity=0.125 Sum_probs=122.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee--------------ccCcEEEEeeC--CeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT--------------IGHRFRPIHDF--GYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~--------------~~~r~~~~~~~--~~~~L~ 111 (808)
...|..+ .+.+|++++|.|.+.+...+.+.|.|||+. . .+. ...|+.+..+. +..+|.
T Consensus 5 ~q~p~~v-~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 5 EQPQISS-TKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp ECCCSEE-EEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred CcCCceE-EecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 4456677 899999999999998522266799999842 2 121 24677776544 577999
Q ss_pred EcccCcCCCeeEEEEEEecCc-c------eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCC
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG-F------AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAP 184 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g-~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 184 (808)
|.+++.+|+|.|.|.+.+..+ . ....+.|.|...+.. ...+|
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~-------------------------------~~~~p 132 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD-------------------------------ADVSP 132 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCC-------------------------------SCCSC
T ss_pred ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccC-------------------------------CCcCC
Confidence 999999999999999998631 1 112456777542110 00122
Q ss_pred eEEe-ecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCE-EccCCCce-EEEecCc---eEEEEEccCCCCCcEEEE
Q psy2145 185 IFTT-SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNV-PIKSGSRF-TETNNFG---FVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 185 ~~~~-~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~-~l~~~~~~-~~~~~~~---~~~L~I~~~~~~D~G~Y~ 257 (808)
...+ .+....+.+|+.++|.|.+.+ ..|. +.|.|+++|. .+...... ....++. ...|.|..+.. | |.|+
T Consensus 133 ~~~v~~p~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~ 209 (242)
T 1hxm_B 133 KPTIFLPSIAETKLQKAGTYLCLLEK-FFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHR 209 (242)
T ss_dssp BCCCCCCCGGGGGSSSCEEEEEEEEE-ESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEE
T ss_pred CceEECCChhhcccCCCceEEEEEee-EECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEE
Confidence 2211 233445678999999999963 3353 8999999987 56432100 0111221 13688888765 5 9999
Q ss_pred EEEEeCceeEEEEEEEEE
Q psy2145 258 CRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 258 C~a~n~~g~~~~~~~l~V 275 (808)
|.|.|..+.......+.+
T Consensus 210 C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 210 CIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp EEEEETTSGGGSCEEEEE
T ss_pred EEEEeCCCCCCceeEeec
Confidence 999998887655555554
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=158.80 Aligned_cols=187 Identities=12% Similarity=0.171 Sum_probs=122.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeC--C---EEe---e----------------ccCcEEEEee--
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKN--G---RPV---T----------------IGHRFRPIHD-- 104 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~--g---~~l---~----------------~~~r~~~~~~-- 104 (808)
+..|..+ .+.+|++|+|.|.+.+...+ ...+.|||. + ..+ . ...|+.+..+
T Consensus 4 l~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 82 (239)
T 3tv3_H 4 LQESGPT-LVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTP 82 (239)
T ss_dssp EEEESCS-EECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGG
T ss_pred EecCCCE-EEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECC
Confidence 4456677 89999999999999852222 558999983 2 111 1 1257766554
Q ss_pred CCeEEEEEcccCcCCCeeEEEEEEecCc-------------ceEEEEEEEEecCCCccccccccccceeeeeeccccccc
Q psy2145 105 FGYVALDIIDTIPEDSGTYTCRAVNLVG-------------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171 (808)
Q Consensus 105 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g-------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (808)
.+.++|.|.+++.+|+|.|.|.+.+..+ .......|.|...
T Consensus 83 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~-------------------------- 136 (239)
T 3tv3_H 83 KNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSA-------------------------- 136 (239)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCC--------------------------
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccC--------------------------
Confidence 4667899999999999999999987532 0112234555321
Q ss_pred cccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCce----EEEEEcc
Q psy2145 172 RGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF----VALDIMQ 247 (808)
Q Consensus 172 ~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~----~~L~I~~ 247 (808)
...+|.+...+....+..|+.++|.|.+.+...+...+.|+++|..+...........++. ..|.|..
T Consensus 137 --------~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~ 208 (239)
T 3tv3_H 137 --------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 208 (239)
T ss_dssp --------CCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEG
T ss_pred --------CCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEch
Confidence 1346777755555566789999999999642222456999999875422111111121221 2688999
Q ss_pred CCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 248 CLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
...+| |.|+|.|.|..+.......|.+
T Consensus 209 ~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 209 SSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp GGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred hhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 98899 9999999998776666655544
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=136.92 Aligned_cols=96 Identities=31% Similarity=0.518 Sum_probs=87.4
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
.+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+..+++..+|.|.++..+|+|.|+|.|
T Consensus 7 ~~P~~~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 83 (103)
T 3qp3_A 7 HAPRITLRMR-SHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC 83 (103)
T ss_dssp EEEEEEECCC-CEEEETTCCEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCc-ceEEeCCCeEEEEEEE--EecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEE
Confidence 4578877765 4678999999999999 799999999999999999999999998888899999999999999999999
Q ss_pred EeCCcceEEEEEEEEEeCC
Q psy2145 714 INRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~~~p 732 (808)
.|.+|..+.++.|.|.+.+
T Consensus 84 ~N~~G~~~~~~~l~V~~~~ 102 (103)
T 3qp3_A 84 TNYKGEASDYATLDVTGGD 102 (103)
T ss_dssp EETTEEEEEEEEEEEECC-
T ss_pred EeCCCcEEEEEEEEEECCC
Confidence 9999999999999998763
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=157.01 Aligned_cols=187 Identities=13% Similarity=0.198 Sum_probs=118.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeC--CCCCceEEEEeCC-----EEe-----ec-----------cCcEEEEee--CCe
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPV--TDSNLKVEWFKNG-----RPV-----TI-----------GHRFRPIHD--FGY 107 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~--~~p~~~v~W~~~g-----~~l-----~~-----------~~r~~~~~~--~~~ 107 (808)
+..|..+ .+.+|++|+|.|.+.+. +.+...|.|||.. ..+ .. ..|+.+..+ .+.
T Consensus 4 v~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 82 (232)
T 3qhz_H 4 LRESGPA-LVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQ 82 (232)
T ss_dssp EEEECCS-EECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTE
T ss_pred EEcCCCE-EECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCE
Confidence 4456666 89999999999999742 1233455999832 111 01 147776654 367
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCc--------ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccc
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVG--------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEET 179 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g--------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (808)
++|.|.+++.+|+|.|.|.+.+..+ .......|.|...
T Consensus 83 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~---------------------------------- 128 (232)
T 3qhz_H 83 VVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSA---------------------------------- 128 (232)
T ss_dssp EEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSS----------------------------------
T ss_pred EEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecC----------------------------------
Confidence 8999999999999999999987631 1223345666421
Q ss_pred cCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCce----EEEEEccCCCCCcEE
Q psy2145 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF----VALDIMQCLPEDSGV 255 (808)
Q Consensus 180 ~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~ 255 (808)
...+|.+........+..|+.++|.|.+.+...+...+.|+++|..+...........++. ..|.|......| |.
T Consensus 129 ~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ 207 (232)
T 3qhz_H 129 STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT 207 (232)
T ss_dssp CCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CC
T ss_pred CCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CE
Confidence 1346777655445566789999999999643323567899999875421111111111221 368899998889 99
Q ss_pred EEEEEEeCceeEEEEEEEEE
Q psy2145 256 YTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 256 Y~C~a~n~~g~~~~~~~l~V 275 (808)
|+|.|.|..+.......|.+
T Consensus 208 ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 208 YICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CEEEEEEGGGTEEEEEECCC
T ss_pred EEEEEEeCCCCccEEEEeCC
Confidence 99999998877666666554
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=160.58 Aligned_cols=172 Identities=17% Similarity=0.261 Sum_probs=116.0
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC-----------------CCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE-----------------DSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.|.|+|+. ..+. ...|+.+..+ .+..+|.|.+++.
T Consensus 17 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 94 (261)
T 2xqy_G 17 LVKPGASVKMSCKA--SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS 94 (261)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred EEcCCCCEEEEEEe--CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence 58899999999999 5666 6789999863 2211 1357766654 3567899999999
Q ss_pred CCCEEEEEEEEeCCeeE---EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccc
Q psy2145 572 EDEGIYICKATNALGEA---VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEI 648 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~---~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 648 (808)
+|+|.|.|.+.|..+.. ...+.|.|...+. .+|.+...... ..+
T Consensus 95 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~v~~~~p~-~~v 141 (261)
T 2xqy_G 95 EDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT--------------------------------TAPSVYPLAPV-CGD 141 (261)
T ss_dssp GGCEEEEEEEECTTSSEEEECCCEEEEECSSCC--------------------------------BCCEEEEECCC-CC-
T ss_pred ccCeEEEEEEecCCCcceEECCCEEEEEccCCC--------------------------------CCCeEEEeCCC-ccc
Confidence 99999999999975311 1234666654211 23554433322 246
Q ss_pred cCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEEEEeC---CEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 649 MEGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHVQHDF---GYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
.+|+.++|.|.+ .| .|.+ .|.|++||..+.......+...+ ..+.|.|..+..+| |.|+|.|.|........
T Consensus 142 ~~g~~v~L~C~~--~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~ 218 (261)
T 2xqy_G 142 TTGSSVTLGCLV--KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD 218 (261)
T ss_dssp -CCSEEEEEEEE--EEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred cCCCcEEEEEEE--EeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEE
Confidence 789999999999 56 4776 99999999875321000011111 13579999988888 99999999987765443
Q ss_pred E
Q psy2145 724 T 724 (808)
Q Consensus 724 ~ 724 (808)
.
T Consensus 219 ~ 219 (261)
T 2xqy_G 219 K 219 (261)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-17 Score=158.28 Aligned_cols=173 Identities=21% Similarity=0.332 Sum_probs=113.6
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC----------------CCCCeEEEee--CcEEEEEECCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE----------------DSSRITTKHD--FGYVAMDLSHVRAE 572 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~----------------~~~~~~~~~~--~~~~~L~I~~v~~~ 572 (808)
.+.+|++|+|.|.+ .+.| .+.|.|+|+. ..+. ...|+.+..+ .+.++|.|.+++.+
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (215)
T 1c5d_H 11 LVQPSQTLSLTCTV--SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp EECTTCCEEEEEEE--CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred eecCCCcEEEEEEE--CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence 58899999999999 5654 5789999862 2210 1246666543 34678999999999
Q ss_pred CCEEEEEEEEeCCee---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 573 DEGIYICKATNALGE---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 573 D~G~Y~C~a~N~~G~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
|+|.|.|.+.|..|. ....+.|.|...+. .+|.+...... ..+.
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--------------------------------~~P~i~~~~~~-~~~~ 135 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQT--------------------------------TAPSVYPLAPG-CGDT 135 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEECSSCC--------------------------------BCCCEEEECCC-SSCC
T ss_pred cCEEEEEEEecCCcccceEcCCEEEEecCCCC--------------------------------CCCeEEeccCC-hhhc
Confidence 999999999997532 12235677763211 13555443322 2467
Q ss_pred CCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCCcEEEEEeCCEEEE--EEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 650 EGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKMGSRFHVQHDFGYVTL--DITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L--~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
+|+.++|.|.+ .|. |.| .|.|+++|..+......... +++...+ .+.....+| |.|+|.|.|..|.......
T Consensus 136 ~g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~~ 211 (215)
T 1c5d_H 136 TSSTVTLGCLV--KGYFPEPVTVTWNSGALSSDVHTFPAVL-QSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDKK 211 (215)
T ss_dssp CCSSEEEEEEE--EEEBSSCCEEEEGGGTTCCSCCBCCCEE-ETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred cCCcEEEEEEE--eeeEcCCcEEEEccCCccCceEecCccc-CCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEEe
Confidence 89999999999 565 887 99999999765321111111 2232221 122444356 9999999999998765544
Q ss_pred E
Q psy2145 726 L 726 (808)
Q Consensus 726 l 726 (808)
+
T Consensus 212 ~ 212 (215)
T 1c5d_H 212 L 212 (215)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=161.70 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=122.4
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee--------------ccCcEEEEee-CCeEEEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT--------------IGHRFRPIHD-FGYVALD 111 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~--------------~~~r~~~~~~-~~~~~L~ 111 (808)
+...|..+ .+.+|++++|.|.+. +.+.+.|.|||++ .. +. ...|+.+..+ .+..+|.
T Consensus 27 v~~~p~~v-~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 27 VSQHPSWV-ISKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp EEEECSEE-EEETTSCEEEEEEES--SSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred EEeCCCeE-EecCCCeEEEEEEeC--CCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 34456677 899999999999997 4678899999953 11 10 1357776653 5677999
Q ss_pred EcccCcCCCeeEEEEEEecCc------ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCe
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPI 185 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 185 (808)
|.+++.+|+|.|+|.|.|..+ .....+.|.|..... ...+|.
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~P~ 151 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK--------------------------------NVFPPE 151 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG--------------------------------GCBCCE
T ss_pred EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC--------------------------------CCCCCE
Confidence 999999999999999999432 112235666653210 124676
Q ss_pred EEee-cCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE---E----EecCce----EEEEEccCCCCC
Q psy2145 186 FTTS-LKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT---E----TNNFGF----VALDIMQCLPED 252 (808)
Q Consensus 186 ~~~~-~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~---~----~~~~~~----~~L~I~~~~~~D 252 (808)
+... +....+.+|+.++|.|.+.+ ..|. +.|.|+|||.++..+.... . ...++. ..|.|.....+|
T Consensus 152 v~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 230 (279)
T 2wbj_D 152 VAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQN 230 (279)
T ss_dssp EEEEECCHHHHHHHSCCEEEEEEEE-EBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTC
T ss_pred EEEECCCcccccCCCceEEEEEEee-EcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhcc
Confidence 6554 44455678999999999953 2343 7999999999986543211 0 012222 248888887765
Q ss_pred -cEEEEEEEEeCcee
Q psy2145 253 -SGVYTCRAVNALGQ 266 (808)
Q Consensus 253 -~G~Y~C~a~n~~g~ 266 (808)
.|.|+|+|.|....
T Consensus 231 ~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 231 PRNHFRCQVQFYGLS 245 (279)
T ss_dssp TTCEEEEEEEECCBC
T ss_pred CCCEEEEEEEeCCCC
Confidence 77899999996543
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=159.97 Aligned_cols=174 Identities=16% Similarity=0.268 Sum_probs=119.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC--E---ec--------------CCCCCeEEEee--CcEEEEEECCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--K---PL--------------EDSSRITTKHD--FGYVAMDLSHVRAED 573 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~---~l--------------~~~~~~~~~~~--~~~~~L~I~~v~~~D 573 (808)
.+.+|++|+|.|.+.+...+...+.|||.. . .+ ....|+.+..+ .+.++|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D 90 (253)
T 3liz_H 11 LVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSED 90 (253)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGG
T ss_pred EECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhh
Confidence 588999999999994212346779999842 1 11 11256666644 356789999999999
Q ss_pred CEEEEEEEEeC----CeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcccc
Q psy2145 574 EGIYICKATNA----LGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIM 649 (808)
Q Consensus 574 ~G~Y~C~a~N~----~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 649 (808)
+|.|.|.+.|. .+.......|.|..... .+|.+...... ..+.
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~i~~~~~~-~~~~ 137 (253)
T 3liz_H 91 TAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKT--------------------------------TPPSVYPLAPG-SAAQ 137 (253)
T ss_dssp CEEEEEEECCBTTTBCCEECCCEEEEECSSCC--------------------------------BCCEEEEECC------
T ss_pred CEEEEEEEecCCcceeeEECCCEEEEEeccCC--------------------------------CCCeEEEecCC-cccC
Confidence 99999999986 23333335666652111 23555533332 3466
Q ss_pred CCceEEEEEEEeeCC-CCCe-EEEEEECCEEcc--------CCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 650 EGQSAHYDCRVVPVG-DPTM-RFEWFVNGVELK--------MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 650 ~G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+|+.++|.|.+ .| .|.+ .|.|++||..+. .++.|.+. +.|.|..+..+| |.|+|.|.|..|.
T Consensus 138 ~g~~v~L~C~~--~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~-----s~L~i~~~~~~d-g~ytC~v~~~~~~ 209 (253)
T 3liz_H 138 TNSMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS-----SSVTVPSSTWPS-ETVTCNVAHPASS 209 (253)
T ss_dssp -CCEEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE-----EEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred CCCcEEEEEEE--eeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEE-----EEEEEcHHHCCC-ceEEEEEEECCCC
Confidence 79999999999 56 6766 999999997431 11233322 479999999999 9999999999999
Q ss_pred eEEEEEEEEE
Q psy2145 720 AVSSTSLKVK 729 (808)
Q Consensus 720 ~~~s~~l~V~ 729 (808)
......|.+.
T Consensus 210 ~~~~~~~~~~ 219 (253)
T 3liz_H 210 TKVDKKIVPR 219 (253)
T ss_dssp EEEEEECCCC
T ss_pred cceEEEecCc
Confidence 8888888766
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=156.20 Aligned_cols=169 Identities=17% Similarity=0.298 Sum_probs=113.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC--Eec---------------CCCCCeEEEee-CcEEEEEECCCCCCCCEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPL---------------EDSSRITTKHD-FGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l---------------~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~ 576 (808)
.+.+|++|+|.|.+ . .+.+.|.|+|++ ..+ ....|+.+..+ .+..+|.|.+++.+|+|.
T Consensus 10 ~v~~G~~v~L~C~~--~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~ 86 (238)
T 1bec_A 10 VAVTGGKVTLSCQQ--T-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSV 86 (238)
T ss_dssp EEETTCCEEEEEEE--S-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEE
T ss_pred EEeCCCcEEEEEEe--C-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEE
Confidence 58899999999998 3 467899999863 111 11356665542 456789999999999999
Q ss_pred EEEEEEeCCe---e--EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 577 YICKATNALG---E--AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 577 Y~C~a~N~~G---~--~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
|.|.+.|..+ . ......|.|..... ...+|.+.........+.+|
T Consensus 87 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~P~v~~~~~~~~~~~~g 136 (238)
T 1bec_A 87 YFCASGGGRGSYAEQFFGPGTRLTVLEDLR------------------------------QVTPPKVSLFEPSKAEIANK 136 (238)
T ss_dssp EEEEEESCTTCGGGCEECCCEEEEEESCGG------------------------------GCBCCEEEEECCCSTTCSSS
T ss_pred EEEEEecCCCCccccccCCCEEEEEeccCC------------------------------CCCCCceEEECCChHHcccC
Confidence 9999999742 1 11234577764211 01246665544444457789
Q ss_pred ceEEEEEEEeeCCC-CC-eEEEEEECCEEccCCCcEE---EEEeCCE----EEEEEccCCCCC-cEEEEEEEEeCCc
Q psy2145 652 QSAHYDCRVVPVGD-PT-MRFEWFVNGVELKMGSRFH---VQHDFGY----VTLDITKCVPAD-SGVYMCKAINRAG 718 (808)
Q Consensus 652 ~~v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~~---~~~~~~~----~~L~I~~v~~~D-~G~Y~C~A~N~~G 718 (808)
+.++|.|.+ .|. |. +.|.|+|||..+..+.+.. +...++. +.|.|......| .|.|+|.|.|...
T Consensus 137 ~~~~L~C~~--~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 137 QKATLVCLA--RGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp CSCSEEEEE--EEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CceEEEEEE--eeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 999999999 564 65 4999999999987654321 2233332 235555444444 6789999999843
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=156.02 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=107.7
Q ss_pred CCCCccc-cCCCCcEEEEEEEeeCCC--CCceEEEEeCCEEeeccCc-EEEEeeCCe----EEEEEcccCcCCCeeEEEE
Q psy2145 55 KPKSIEN-LRERGHAHFECKLEPVTD--SNLKVEWFKNGRPVTIGHR-FRPIHDFGY----VALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 55 ~p~~~~~-v~~G~~v~l~C~~~~~~~--p~~~v~W~~~g~~l~~~~r-~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~ 126 (808)
.|.+... +.+|++++|.|.+.+... |.+.|.|||+|.++..+.. ......++. ..|.|.....+|+|.|+|.
T Consensus 7 ~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~ 86 (207)
T 1l6x_A 7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 86 (207)
T ss_dssp ECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred eCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEE
Confidence 3444413 389999999999996321 3469999999988764321 111122222 1344445555569999999
Q ss_pred EEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEE
Q psy2145 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECR 206 (808)
Q Consensus 127 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~ 206 (808)
|.|..+.......+.+.. ....+|.+...+.......|..++|.|.
T Consensus 87 a~n~~~~~~~~~~v~~~~----------------------------------~~~~~P~v~~~~~~~~~~~~~~~~L~C~ 132 (207)
T 1l6x_A 87 VSNKALPAPIEKTISKAK----------------------------------GQPREPQVYTLPPSRDELTKNQVSLTCL 132 (207)
T ss_dssp EECTTSSSCEEEEECCCC----------------------------------SCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred EEcCcCCcceEEEeccCC----------------------------------CCCcCCEEEEECCChHHhcCCcEEEEEE
Confidence 999877653333332100 1145677665554433335667999999
Q ss_pred EeecCCCC-eEEEEeeCCEEccCCCceE-EEecCce----EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 207 LIPVSDNT-MKVEWFHNNVPIKSGSRFT-ETNNFGF----VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 207 ~~~~~~p~-~~v~W~~~g~~l~~~~~~~-~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
+.+ ..|. +.|.|+|||.++....... ....+|. ..|.|.....+|.|.|+|.|.|...
T Consensus 133 ~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 133 VKG-FYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EeC-eECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 964 2343 5999999999886422111 1122332 1355666656789999999999643
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=157.60 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=114.1
Q ss_pred cceeeeccCCCchhhhhhhccCCccceeecCCCCccc-cCCCCcEEEEEEEeeCC-CC-CceEEEEeCCEEeeccCcEE-
Q psy2145 25 YHWQNVPVPEWSKEQENAKKKKNFIYYTVTKPKSIEN-LRERGHAHFECKLEPVT-DS-NLKVEWFKNGRPVTIGHRFR- 100 (808)
Q Consensus 25 g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-v~~G~~v~l~C~~~~~~-~p-~~~v~W~~~g~~l~~~~r~~- 100 (808)
|.|.|...+.... -.. ......+..++..|... . +..|+.++|.|.+.++. .| ...|.|+|||..+.......
T Consensus 1 ~~~~~~~~~~~~~-c~~-~~~~~~P~v~i~~ps~~-~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~ 77 (240)
T 4acp_A 1 GTKSCDKTHTCPP-CPA-PELLGGPSVFLFPPKPK-DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR 77 (240)
T ss_dssp ------------------------CEEEEECCCHH-HHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred CceeeeeeecCCC-CCc-cccCCCCEEEEECcChH-HhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence 7888888776543 111 10111234455666665 5 77899999999999742 14 45899999999985432111
Q ss_pred -EEeeCC---eEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeecccccccccccc
Q psy2145 101 -PIHDFG---YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYI 176 (808)
Q Consensus 101 -~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (808)
...++. ...|.|.....+|.|.|+|+|.|..+.......+....
T Consensus 78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~-------------------------------- 125 (240)
T 4acp_A 78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK-------------------------------- 125 (240)
T ss_dssp EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC--------------------------------
T ss_pred eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC--------------------------------
Confidence 111221 13689988888899999999999876433332322100
Q ss_pred ccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCc--eEEEecCce---EEEEEccCCC
Q psy2145 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSR--FTETNNFGF---VALDIMQCLP 250 (808)
Q Consensus 177 ~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~--~~~~~~~~~---~~L~I~~~~~ 250 (808)
....+|.+.+.+......+|+.++|.|.+.+. .|. ..|.|+|||..+..... .....++.+ ..|.|.....
T Consensus 126 --~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf-~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~ 202 (240)
T 4acp_A 126 --GQPREPQVYTLPPSRDELTKNQVSLTCLVKGF-YPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRW 202 (240)
T ss_dssp --SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE-BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred --CCCCCCEEEEECCChHHhcCCceEEEEEEeEE-eCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHh
Confidence 11457777776665544469999999999642 444 58999999998753211 111222222 2466666666
Q ss_pred CCcEEEEEEEEeCc
Q psy2145 251 EDSGVYTCRAVNAL 264 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~ 264 (808)
.|.|.|+|+|.|..
T Consensus 203 ~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 203 QQGNVFSCSVMHEA 216 (240)
T ss_dssp HTTCCEEEEEECTT
T ss_pred CCCCEEEEEEEECC
Confidence 78999999999854
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-17 Score=158.48 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=106.2
Q ss_pred eeeecCCCccc-ccCCCceEEEEEEeeCCCC----CcEEEEEECCEecCCCCC-eEEEeeCcE----EEEEECCCCCCCC
Q psy2145 505 VFTKPLQNIDA-VEEGKNAHFSCRLIPVGDP----TLKVEWFRNEKPLEDSSR-ITTKHDFGY----VAMDLSHVRAEDE 574 (808)
Q Consensus 505 ~f~~~~~~~~~-v~~G~~v~l~C~v~~~g~P----~~~v~W~k~g~~l~~~~~-~~~~~~~~~----~~L~I~~v~~~D~ 574 (808)
+++.++... . +.+|+.+.|.|.+ .|.| .+.|+|+|+|.++..... ......++. ..|.|.....+|+
T Consensus 4 v~~~pps~~-~~~~~G~~v~L~C~~--~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~ 80 (207)
T 1l6x_A 4 VFLFPPKPK-DTLMISRTPEVTCVV--VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 80 (207)
T ss_dssp EEEECCCHH-HHHCTTSCCEEEEEE--EEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred EEEeCcChH-HheecCCceEEEEEE--ecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCC
Confidence 444444332 3 3799999999999 4554 459999999988764311 111122232 1244444444459
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceE
Q psy2145 575 GIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSA 654 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 654 (808)
|.|+|.|.|..|....+..+.+.. ....+|.+.........+ +|..+
T Consensus 81 g~Y~C~a~n~~~~~~~~~~v~~~~--------------------------------~~~~~P~v~~~~~~~~~~-~~~~~ 127 (207)
T 1l6x_A 81 KEYKCKVSNKALPAPIEKTISKAK--------------------------------GQPREPQVYTLPPSRDEL-TKNQV 127 (207)
T ss_dssp CCEEEEEECTTSSSCEEEEECCCC--------------------------------SCCBCCEEEEECCCGGGG-GSSEE
T ss_pred ceEEEEEEcCcCCcceEEEeccCC--------------------------------CCCcCCEEEEECCChHHh-cCCcE
Confidence 999999999988653333332100 011246555444332233 46669
Q ss_pred EEEEEEeeCC-CCC-eEEEEEECCEEccCCCcEEE--EEeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 655 HYDCRVVPVG-DPT-MRFEWFVNGVELKMGSRFHV--QHDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 655 ~l~C~v~~~g-~P~-p~i~W~~~g~~l~~~~~~~~--~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+|.|.+ .| .|. +.|.|+|||.++........ ..++.+ +.|.|.....+|.|.|+|.|.|....
T Consensus 128 ~L~C~~--~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 128 SLTCLV--KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEEE--EEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEE--eCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 999999 57 454 49999999998864322111 112222 24556655556899999999998653
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=137.34 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=88.9
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
.+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+....+..+|.|.++..+|+|.|+|.|
T Consensus 6 ~pp~i~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (114)
T 2cqv_A 6 SGPQIIQFPE-DQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLV 82 (114)
T ss_dssp CCCEESCCCC-SEEEETTCCEEEEEEE--ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred CCCEEEeCCC-CeEEeCCCeEEEEEEE--EcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence 3577766544 4679999999999999 799999999999999999888999988777889999999999999999999
Q ss_pred EeCCcceEEEEEEEEEeCCCccc
Q psy2145 714 INRAGEAVSSTSLKVKSKSDIVS 736 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~~~p~~~~ 736 (808)
.|..|..+.++.|.|..+|..+.
T Consensus 83 ~N~~g~~~~~~~l~V~~~p~~P~ 105 (114)
T 2cqv_A 83 ENKLGSRQAQVNLTVVDKPDPPA 105 (114)
T ss_dssp ECSSCEEECCEEEEEECSCSCCC
T ss_pred EECCCcEEEEEEEEEECCCCCCC
Confidence 99999999999999998876543
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=161.30 Aligned_cols=167 Identities=19% Similarity=0.333 Sum_probs=101.3
Q ss_pred cccCCCceEEEEEEeeCCCC--CcEEEEEECC--EecC-----------------CCCCeEEEee--CcEEEEEECCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDP--TLKVEWFRNE--KPLE-----------------DSSRITTKHD--FGYVAMDLSHVRA 571 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P--~~~v~W~k~g--~~l~-----------------~~~~~~~~~~--~~~~~L~I~~v~~ 571 (808)
.+.+|++|+|.|.+ .+.| .+.+.|||.. ..+. ...|+.+..+ .+..+|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (257)
T 3bn9_D 11 LVKPGGSLRLSCAA--SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA 88 (257)
T ss_dssp EECTTCEEEEEEEE--ESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred EEcCCCcEEEEEEe--ccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 58899999999999 5665 6789999853 2110 1357776654 4567899999999
Q ss_pred CCCEEEEEEEEeCCe----------e---EEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeE
Q psy2145 572 EDEGIYICKATNALG----------E---AVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIF 638 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G----------~---~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~ 638 (808)
+|+|.|.|.+.|..| . ......|.|...+. .+|.+
T Consensus 89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~--------------------------------~~P~v 136 (257)
T 3bn9_D 89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAST--------------------------------KGPSV 136 (257)
T ss_dssp GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCC--------------------------------BCCEE
T ss_pred hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCC--------------------------------cCCcE
Confidence 999999999999865 1 11234666654211 12443
Q ss_pred EeecCCCccccCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccC---------CCcEEEEEeCCEEEEEEccCCCCCcE
Q psy2145 639 TQLLTGTSEIMEGQSAHYDCRVVPVGD-PTM-RFEWFVNGVELKM---------GSRFHVQHDFGYVTLDITKCVPADSG 707 (808)
Q Consensus 639 ~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~p-~i~W~~~g~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G 707 (808)
....+. ..+.+|+.++|.|.+ .|. |.| .|.|++||..+.. ++.|.+ .+.|.|..+..+| |
T Consensus 137 ~~~~p~-~~~~~g~~v~L~C~~--~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~-----~s~L~I~~~~~~~-g 207 (257)
T 3bn9_D 137 FPLAPS-SKSTSGGTAALGCLV--KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-Q 207 (257)
T ss_dssp CCCCC------------CCCEE--EEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEE-----EEECCCC--------
T ss_pred EEecCc-ccccCCCcEEEEEEE--eeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEE-----EEEEEEcccccCC-C
Confidence 322211 235689999999999 564 877 9999999986431 112222 2468898888778 9
Q ss_pred EEEEEEEeCCcceEEEE
Q psy2145 708 VYMCKAINRAGEAVSST 724 (808)
Q Consensus 708 ~Y~C~A~N~~G~~~~s~ 724 (808)
.|+|.|.|..+......
T Consensus 208 ~YtC~v~n~~~~~~~~~ 224 (257)
T 3bn9_D 208 TYICNVNHKPSNTKVDK 224 (257)
T ss_dssp CEEEEEEEGGGTEEEEE
T ss_pred eEEEEEEecCCCcCEEE
Confidence 99999999876544333
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-17 Score=162.06 Aligned_cols=180 Identities=17% Similarity=0.256 Sum_probs=113.3
Q ss_pred CCCeeeecCCCccc-ccCCCceEEEEEEeeCCC---CCc-EEEEEECCEecCCCCC-eEEEeeC----cEEEEEECCCCC
Q psy2145 502 QRPVFTKPLQNIDA-VEEGKNAHFSCRLIPVGD---PTL-KVEWFRNEKPLEDSSR-ITTKHDF----GYVAMDLSHVRA 571 (808)
Q Consensus 502 ~~P~f~~~~~~~~~-v~~G~~v~l~C~v~~~g~---P~~-~v~W~k~g~~l~~~~~-~~~~~~~----~~~~L~I~~v~~ 571 (808)
.|.+|+.++... . +.+|+.++|.|.+ .|. |.+ .|+|+|++..+..... ......+ +...|.|.++..
T Consensus 15 ~P~v~~~pp~~~-~~v~~G~~v~L~C~~--~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~ 91 (239)
T 1i1c_A 15 VSSVFIFPPKTK-DVLGGGLTPKVTCVV--VDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDW 91 (239)
T ss_dssp --CEEEECCCHH-HHTTSSSCCEEEEEE--EEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHH
T ss_pred CCEEEEECCChH-HhcccCCcEEEEEEE--ecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHc
Confidence 344555544432 4 7899999999999 454 765 8999999876643210 0001111 224799999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCC
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEG 651 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 651 (808)
+|+|.|+|.|.|..|.......+.. .. ....+|.+....... ....|
T Consensus 92 ~D~g~Y~C~~~~~~~~~~~~~~v~~--~~------------------------------~~~~~P~v~v~~~~~-~~~~g 138 (239)
T 1i1c_A 92 LNGKTFKCKVNSGAFPAPIEKSISK--PE------------------------------GTPRGPQVYTMAPPK-EEMTQ 138 (239)
T ss_dssp HTTCCEEEEEECSSSSSCEEEEECC--CS------------------------------SCCBCCEEEEECCCG-GGGGS
T ss_pred cCCCeEEEEEecccCCCCcEEEEec--CC------------------------------CCCcCCEEEEECCCh-HHhcC
Confidence 9999999999999886432222211 00 011346665544432 23458
Q ss_pred ceEEEEEEEeeCC-CCC-eEEEEEECCEEccCCCcEE--EEEeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 652 QSAHYDCRVVPVG-DPT-MRFEWFVNGVELKMGSRFH--VQHDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 652 ~~v~l~C~v~~~g-~P~-p~i~W~~~g~~l~~~~~~~--~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.++|.|.+ .| .|. +.|.|+|||+.+....... ...++.+ +.|.|.....+|.|.|+|.|.|....
T Consensus 139 ~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 139 SQVSITCMV--KGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp SEEEEEEEE--EEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CcEEEEEEE--eeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 899999999 56 454 5899999999986432211 1122222 23555554445799999999999754
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-16 Score=155.01 Aligned_cols=186 Identities=13% Similarity=0.140 Sum_probs=120.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee--------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT--------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~--------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+...+...+.|||. +. .+. ...|+.+..+ .+.++|.
T Consensus 3 l~~~~~v-~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 81 (248)
T 3u2s_H 3 LVESGGG-VVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQ 81 (248)
T ss_dssp EEEECCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred eecCCCE-EEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEE
Confidence 4556777 89999999999999842234568999983 21 110 1257776554 4677899
Q ss_pred EcccCcCCCeeEEEEEEecCc----------------------ceEEEEEEEEecCCCccccccccccceeeeeeccccc
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG----------------------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSK 169 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g----------------------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (808)
|.+++.+|+|.|.|.+.+..+ .....+.|.|...
T Consensus 82 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~------------------------ 137 (248)
T 3u2s_H 82 MNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA------------------------ 137 (248)
T ss_dssp ECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC------------------------
T ss_pred ECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc------------------------
Confidence 999999999999999987421 1112345555421
Q ss_pred cccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCCceEEEecCc----eEEEE
Q psy2145 170 YQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFG----FVALD 244 (808)
Q Consensus 170 ~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~ 244 (808)
...+|.+...+....+..|+.++|.|.+.+. .| .+.+.|+++|..+...........++ ...|.
T Consensus 138 ----------~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~-~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~ 206 (248)
T 3u2s_H 138 ----------STKGPSVFPLAPSSKSTSGGTAALGCLVKDY-FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVT 206 (248)
T ss_dssp ----------CCBCCEEEEECCC------CEEEEEEEEEEE-BSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEE
T ss_pred ----------CCCCCEEEEeCCCccccCCCcEEEEEEEeeE-ECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEE
Confidence 1346777655555556679999999999753 34 67899999987542111101111122 12688
Q ss_pred EccCCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 245 IMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 245 I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
|......| |.|+|.|.|..+.......|.+
T Consensus 207 i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 207 VPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred EChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 88888888 9999999998776665555544
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-16 Score=131.88 Aligned_cols=95 Identities=34% Similarity=0.486 Sum_probs=83.4
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE-EeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+. ..++..+|.|.++..+|+|.|+|.
T Consensus 4 ~~P~~~~~~~~-~~v~~G~~v~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 80 (99)
T 1g1c_A 4 EAPKIFERIQS-QTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 80 (99)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCceEecCcc-eEEcCCCcEEEEEEE--EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEE
Confidence 35777776554 678999999999999 69999999999999999988777654 357788999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeC
Q psy2145 713 AINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~ 731 (808)
|.|.+|....++.|.|.++
T Consensus 81 a~N~~g~~~~~~~l~V~~~ 99 (99)
T 1g1c_A 81 AINIAGETSSHAFLLVQAK 99 (99)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEECCCcEEEEEEEEEecC
Confidence 9999999999999999864
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=158.48 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=114.3
Q ss_pred CCCCccc-cCCCCcEEEEEEEeeCC-CCCc-eEEEEeCCEEeeccCcE-EEEeeC----CeEEEEEcccCcCCCeeEEEE
Q psy2145 55 KPKSIEN-LRERGHAHFECKLEPVT-DSNL-KVEWFKNGRPVTIGHRF-RPIHDF----GYVALDIIDTIPEDSGTYTCR 126 (808)
Q Consensus 55 ~p~~~~~-v~~G~~v~l~C~~~~~~-~p~~-~v~W~~~g~~l~~~~r~-~~~~~~----~~~~L~I~~~~~~D~G~Y~C~ 126 (808)
.|..... +.+|++++|.|.+.+.. .|.+ .|.|||++..+...... .....+ +..+|.|.+++.+|+|.|+|.
T Consensus 21 ~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~ 100 (239)
T 1i1c_A 21 FPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCK 100 (239)
T ss_dssp ECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred ECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEE
Confidence 3555524 88999999999998632 1554 89999998776532110 001111 234799999999999999999
Q ss_pred EEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEE
Q psy2145 127 AVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECR 206 (808)
Q Consensus 127 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~ 206 (808)
|.|..+.......+... . ....+|.+...+.......|+.++|.|.
T Consensus 101 ~~~~~~~~~~~~~v~~~--~--------------------------------~~~~~P~v~v~~~~~~~~~g~~~~L~C~ 146 (239)
T 1i1c_A 101 VNSGAFPAPIEKSISKP--E--------------------------------GTPRGPQVYTMAPPKEEMTQSQVSITCM 146 (239)
T ss_dssp EECSSSSSCEEEEECCC--S--------------------------------SCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred EecccCCCCcEEEEecC--C--------------------------------CCCcCCEEEEECCChHHhcCCcEEEEEE
Confidence 99988764332222110 0 1145777776665544456899999999
Q ss_pred EeecCCCC-eEEEEeeCCEEccCCCceE-EEecCceE----EEEEccCCCCCcEEEEEEEEeCce
Q psy2145 207 LIPVSDNT-MKVEWFHNNVPIKSGSRFT-ETNNFGFV----ALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 207 ~~~~~~p~-~~v~W~~~g~~l~~~~~~~-~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
+.+. .|. ..|.|+|||..+....... ....+|.. .|.|.....+|.|.|+|.|.|...
T Consensus 147 ~~g~-~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 147 VKGF-YPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp EEEE-BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred Eeee-ECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence 9642 443 6899999999985432111 11233322 355555555679999999999653
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=152.27 Aligned_cols=175 Identities=13% Similarity=0.207 Sum_probs=116.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--EE---ee------------ccCcEEEEee-CCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--RP---VT------------IGHRFRPIHD-FGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~~---l~------------~~~r~~~~~~-~~~~~L~I~~ 114 (808)
+..|..+ .+.+|++|+|.|.+. .+.+.|.|||++ .. +. ...|+.+..+ .+..+|.|.+
T Consensus 3 ~q~p~~v-~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 78 (238)
T 1bec_A 3 TQSPRNK-VAVTGGKVTLSCQQT---NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILEL 78 (238)
T ss_dssp EEECSEE-EEETTCCEEEEEEES---SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESS
T ss_pred ccCCCee-EEeCCCcEEEEEEeC---CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEec
Confidence 3456677 899999999999985 356799999953 11 11 1356666543 4667999999
Q ss_pred cCcCCCeeEEEEEEecCc---c--eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 115 TIPEDSGTYTCRAVNLVG---F--AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~~g---~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
++.+|+|.|.|.+.|..+ . ....+.|.|..... ...+|.+...
T Consensus 79 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~~~P~v~~~ 126 (238)
T 1bec_A 79 ATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR--------------------------------QVTPPKVSLF 126 (238)
T ss_dssp CCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGG--------------------------------GCBCCEEEEE
T ss_pred CCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCC--------------------------------CCCCCceEEE
Confidence 999999999999998642 1 12234577753210 0246666553
Q ss_pred -cCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE---EEecCceE----EEEEccCCCCC-cEEEEEE
Q psy2145 190 -LKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT---ETNNFGFV----ALDIMQCLPED-SGVYTCR 259 (808)
Q Consensus 190 -~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~---~~~~~~~~----~L~I~~~~~~D-~G~Y~C~ 259 (808)
+....+.+|+.++|.|.+.+ ..|. +.|.|+|||..+..+.... ....++.+ .|.|......| .|.|+|.
T Consensus 127 ~~~~~~~~~g~~~~L~C~~~g-~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~ 205 (238)
T 1bec_A 127 EPSKAEIANKQKATLVCLARG-FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQ 205 (238)
T ss_dssp CCCSTTCSSSCSCSEEEEEEE-EBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEE
T ss_pred CCChHHcccCCceEEEEEEee-EeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEE
Confidence 44556778999999999953 2354 5999999999987653221 21223322 34555544444 6799999
Q ss_pred EEeCc
Q psy2145 260 AVNAL 264 (808)
Q Consensus 260 a~n~~ 264 (808)
|.|..
T Consensus 206 v~~~~ 210 (238)
T 1bec_A 206 VQFHG 210 (238)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 99963
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=136.12 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=85.8
Q ss_pred ccCCCeEEee--cCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEE
Q psy2145 632 QYEKPIFTQL--LTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709 (808)
Q Consensus 632 ~~~~P~~~~~--~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 709 (808)
...+|.|... ......+.+|+.+.|.|.+ .|.|.|.|.|+|||..+. +.++.+....+..+|.|.++..+|+|.|
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~--~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 94 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPF--QGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEY 94 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEE--EEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEE
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEE--ccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEE
Confidence 3456777543 3445678999999999999 799999999999999997 5677787777888999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEEEeCCC
Q psy2145 710 MCKAINRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V~~~p~ 733 (808)
+|.|.|..|..+.++.|.|..+|+
T Consensus 95 ~C~a~N~~G~~~~~~~l~V~~~P~ 118 (118)
T 2e7c_A 95 ELSVQIENMKDTATIRIRVVEKAG 118 (118)
T ss_dssp EEEEECSSCEECCEEEEEEECCCC
T ss_pred EEEEEeCCCeEEEEEEEEEEcCCC
Confidence 999999999999999999998873
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=148.80 Aligned_cols=185 Identities=14% Similarity=0.210 Sum_probs=124.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee--------------ccCcEEEEeeC--CeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT--------------IGHRFRPIHDF--GYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~--------------~~~r~~~~~~~--~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+...+...+.|||. +. .+. ...|+.+..+. +.++|.
T Consensus 4 v~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (230)
T 3n9g_H 4 LVQSGAE-VRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYME 82 (230)
T ss_dssp EEECCCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EEecCCE-EEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEE
Confidence 4456666 89999999999999742234568999983 11 110 12577766553 567899
Q ss_pred EcccCcCCCeeEEEEEEecCc-----ce---EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCC
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG-----FA---EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQA 183 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g-----~~---~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (808)
|.+++.+|+|.|.|.+.+..+ .. ...+.|.|.... ..+
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------~~~ 128 (230)
T 3n9g_H 83 LSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS----------------------------------TKG 128 (230)
T ss_dssp ECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC----------------------------------CBC
T ss_pred ECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC----------------------------------CCC
Confidence 999999999999999987531 11 123456664211 346
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCCce--EEEecCc----eEEEEEccCCCCCcEEE
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF--TETNNFG----FVALDIMQCLPEDSGVY 256 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~I~~~~~~D~G~Y 256 (808)
|.+........+.+|+.++|.|.+.+. .| .+.+.| +|..+..+... .....++ ...|.|.....+| |.|
T Consensus 129 P~v~~~~~~~~~~~g~~v~L~C~~~~~-~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y 204 (230)
T 3n9g_H 129 PSVFPLAPSSKSTSGGTAALGCLVKDY-FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY 204 (230)
T ss_dssp CEEEEECCCCCCCTTCEEEEEEEEEEE-BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCC
T ss_pred CEEEecCCCccccCCCCEEEEEEEEeE-ECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeE
Confidence 666655555556799999999999643 34 578999 66555321110 0111222 1368999999999 999
Q ss_pred EEEEEeCceeEEEEEEEEEe
Q psy2145 257 TCRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 257 ~C~a~n~~g~~~~~~~l~V~ 276 (808)
+|.|.|..+.......|.|.
T Consensus 205 tC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 205 ICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp EEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEECCCCcceEEEccCC
Confidence 99999988776666666654
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=180.82 Aligned_cols=164 Identities=22% Similarity=0.347 Sum_probs=119.4
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC------------CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED------------SSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
.+.+|++++|.|.+. .+.|.+.|+|+|++..+.. ..+..+..+ + +|.|.+++.+|+|.|+|.|.
T Consensus 377 ~~~~G~~v~L~C~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~--~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 377 TARIGEPLVLKCKGA-PKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN-G--SLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp EEETTSCEEECCTTC-CSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT-S--CEEESSCCGGGCEEEEEEEE
T ss_pred ceecCCcEEEeeeec-CCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC-c--eEEEeccccccCeEEEEEEE
Confidence 578999999999863 4788999999998763311 224443332 2 69999999999999999999
Q ss_pred eCCeeE-EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce-EEEEEEE
Q psy2145 583 NALGEA-VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS-AHYDCRV 660 (808)
Q Consensus 583 N~~G~~-~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~-v~l~C~v 660 (808)
|..|.. ...+.|.|...+. +|.+.... ..+.+|+. +.|.|.+
T Consensus 453 n~~~~~~~~~~~l~V~~~~~---------------------------------~p~i~~~~---~~~~~~~~~~~l~C~~ 496 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPG---------------------------------KPEIVDSA---SELTAGVPNKVGTCVS 496 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCC---------------------------------CCEEESCC---SEECTTSCEEEEEEEE
T ss_pred cCCCceeEEEEEEEEEcCCC---------------------------------CCEEEcCC---cccccCCceeEEEEEC
Confidence 999987 7778898876443 24333221 22445554 5679999
Q ss_pred eeCC-CCCeEEEEEECCEEccCC-CcEEEEE------eCC----EEEEEEccCCC-CCcEEEEEEEEeCCcce
Q psy2145 661 VPVG-DPTMRFEWFVNGVELKMG-SRFHVQH------DFG----YVTLDITKCVP-ADSGVYMCKAINRAGEA 720 (808)
Q Consensus 661 ~~~g-~P~p~i~W~~~g~~l~~~-~~~~~~~------~~~----~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~ 720 (808)
.| .|.|.|+|++||++|... .++.+.. +.| .++|.|..+.. ++.|.|+|.|+|.++..
T Consensus 497 --~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 497 --EGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp --EEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred --CCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 56 699999999999999753 3333321 112 35799999984 55889999999997543
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-16 Score=128.23 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=77.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.+ ..+.+|+.++|.|.+ .+ |.+.|.|||||++|..+.++.+..+++.++|.|.++..+|+|.|+|.|.
T Consensus 5 ~~~~~~~~~~-~~v~~G~~v~l~C~v--~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~ 80 (93)
T 1waa_A 5 LIEVEKPLYG-VEVFVGETAHFEIEL--SE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80 (93)
T ss_dssp CCCEEECCCC-EEEETTSCEEEEEEE--SS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEET
T ss_pred CcEeeccCcc-eEEeCCCCEEEEEEE--CC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEEC
Confidence 4778777765 689999999999999 55 4588999999999999999999999888999999999999999999998
Q ss_pred eCCcceEEEEEEEEEe
Q psy2145 715 NRAGEAVSSTSLKVKS 730 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~ 730 (808)
|. ..++.|.|..
T Consensus 81 n~----~~sa~L~V~~ 92 (93)
T 1waa_A 81 NT----KSAANLKVKE 92 (93)
T ss_dssp TE----EEEEEEEEEC
T ss_pred CC----cEEEEEEEEc
Confidence 85 5788898875
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=157.74 Aligned_cols=168 Identities=17% Similarity=0.270 Sum_probs=113.1
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEEC--CEec------CC---------CC-CeEEEeeCcEEEEEECCCCCCCCEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPL------ED---------SS-RITTKHDFGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~--g~~l------~~---------~~-~~~~~~~~~~~~L~I~~v~~~D~G~ 576 (808)
.+.+|++|+|.|.+ .+.+.+.|.|||. +..+ .. .. |+.+..+.... |.|.+++.+|+|.
T Consensus 12 ~v~~G~~v~L~C~~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~ 88 (253)
T 3to4_D 12 LVPRGQAVNLRCIL--KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRT 88 (253)
T ss_dssp EEESSCCEEEEEEC--SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEE
T ss_pred EEeCCCcEEEEEEe--CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeE
Confidence 58899999999998 7888899999982 1110 00 11 44444433322 9999999999999
Q ss_pred EEEEEEeCCe------eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccC
Q psy2145 577 YICKATNALG------EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIME 650 (808)
Q Consensus 577 Y~C~a~N~~G------~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 650 (808)
|.|.+.+..+ .......|.|..... ...+|.+.........+.+
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~------------------------------~~~~P~v~~~~~~~~~~~~ 138 (253)
T 3to4_D 89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDLK------------------------------NVFPPEVAVFEPSEAEISH 138 (253)
T ss_dssp EEEEEECSCCSTTCCEEECCCEEEEEESCST------------------------------TCBCCEEEEEECCHHHHHH
T ss_pred EEEEEecCCCCcccceEECCCEEEEEecCCC------------------------------CCCCCeEEEeCCChhhccc
Confidence 9999997654 122224666654211 1124666554444445667
Q ss_pred CceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEEE--------EeCCE---EEEEEccCCCCC-cEEEEEEEEeC
Q psy2145 651 GQSAHYDCRVVPVG-DPTM-RFEWFVNGVELKMGSRFHVQ--------HDFGY---VTLDITKCVPAD-SGVYMCKAINR 716 (808)
Q Consensus 651 G~~v~l~C~v~~~g-~P~p-~i~W~~~g~~l~~~~~~~~~--------~~~~~---~~L~I~~v~~~D-~G~Y~C~A~N~ 716 (808)
|+.++|.|.+ .| .|.+ .|.|+|||.+|..+...... .++.+ +.|.|.....+| .|.|+|.|.|.
T Consensus 139 g~~~~L~C~~--~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~ 216 (253)
T 3to4_D 139 TQKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFY 216 (253)
T ss_dssp HSEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred CCceEEEEEE--ceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeC
Confidence 8999999999 56 6766 99999999998653221100 11212 478888887777 77999999998
Q ss_pred C
Q psy2145 717 A 717 (808)
Q Consensus 717 ~ 717 (808)
.
T Consensus 217 ~ 217 (253)
T 3to4_D 217 G 217 (253)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=157.46 Aligned_cols=180 Identities=14% Similarity=0.238 Sum_probs=109.3
Q ss_pred CCCeEEeecCcee-ecCCCeEEEEEEEeecC-CC-CeEEEEeeCCEEccCCCceE--EEecCc---eEEEEEccCCCCCc
Q psy2145 182 QAPIFTTSLKNCE-IKEGQRAHFECRLIPVS-DN-TMKVEWFHNNVPIKSGSRFT--ETNNFG---FVALDIMQCLPEDS 253 (808)
Q Consensus 182 ~~P~~~~~~~~~~-v~~G~~v~L~C~~~~~~-~p-~~~v~W~~~g~~l~~~~~~~--~~~~~~---~~~L~I~~~~~~D~ 253 (808)
.|+.++..+.... +..|+.++|.|.+.+.. .| .+.|.|+|||.++....... ...++. ...|.|.....+|.
T Consensus 22 ~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~ 101 (240)
T 4acp_A 22 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 101 (240)
T ss_dssp -CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHT
T ss_pred CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCC
Confidence 3555566666666 67899999999996322 13 56899999999985432111 111111 13688888888889
Q ss_pred EEEEEEEEeCceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeE
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAA 333 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~ 333 (808)
|.|+|+|.|..+.......+.+.. ....+|.+...+......+|+.+
T Consensus 102 ~~YtC~v~h~~~~~~~~~~i~~~~---------------------------------~~~~~P~V~v~~~~~~~~~g~~~ 148 (240)
T 4acp_A 102 KEYKCKVSNKALPAPIEKTISKAK---------------------------------GQPREPQVYTLPPSRDELTKNQV 148 (240)
T ss_dssp CCEEEEEECC----CEEEEECCCC---------------------------------SCCBCCEEEEECCCGGGGGSSEE
T ss_pred CEEEEEEEcCCCCccccccccccC---------------------------------CCCCCCEEEEECCChHHhcCCce
Confidence 999999999776433222222100 01235555443333333359999
Q ss_pred EEEEEEeecC-CCc-cEEEEEECCEeccCCCcE--EEEeeCcE---EEEEEccCCCCCCeEEEEEEEcCC
Q psy2145 334 HFEARLIPVG-DSK-LKVTWLRNGVPIQASNRV--STMHDFGY---VALNFKYTYPEDSGTYTCRAVNEL 396 (808)
Q Consensus 334 ~l~C~~~~~g-~p~-~~v~W~~~g~~l~~~~~~--~~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~n~~ 396 (808)
.|.|.+ .| +|. ..|.|++||.++...... ....++.+ +.|.|......|.|.|+|.|.|..
T Consensus 149 ~L~C~~--~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 149 SLTCLV--KGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 216 (240)
T ss_dssp EEEEEE--EEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred EEEEEE--eEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence 999999 45 555 589999999987532111 11122222 356666655568999999999975
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=129.60 Aligned_cols=93 Identities=28% Similarity=0.527 Sum_probs=85.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+..+++.++|.|.++..+|+|.|+|.|.
T Consensus 6 ~P~i~~~~~~-~~v~~G~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 82 (99)
T 3puc_A 6 KPVIVTGLQD-TTVSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82 (99)
T ss_dssp EEEEEECCCC-EEEESSSCEEEEEEE--EEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCEEEecCcc-EEEeCCCcEEEEEEE--EecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence 4777766543 678999999999999 7999999999999999999999999988888999999999999999999999
Q ss_pred eCCcceEEEEEEEEEe
Q psy2145 715 NRAGEAVSSTSLKVKS 730 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~ 730 (808)
|..|..+.++.|.|++
T Consensus 83 n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 83 NSAGSVSSSCKLTIKA 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCcEeEEEEEEEEe
Confidence 9999999999999974
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=159.14 Aligned_cols=173 Identities=12% Similarity=0.153 Sum_probs=115.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---eec------------cC-cEEEEeeCCeEEEEEccc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VTI------------GH-RFRPIHDFGYVALDIIDT 115 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~~------------~~-r~~~~~~~~~~~L~I~~~ 115 (808)
..|..+ .+.+|++++|.|.+. +.+.+.+.|||. +.. +.. .. |+.+..+.... |.|.++
T Consensus 6 q~p~~v-~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v 81 (253)
T 3to4_D 6 QNPRWR-LVPRGQAVNLRCILK--NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVA 81 (253)
T ss_dssp EECSEE-EEESSCCEEEEEECS--CTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEE
T ss_pred eCCCeE-EEeCCCcEEEEEEeC--CCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccC
Confidence 346666 899999999999987 467789999982 211 110 11 66665554443 999999
Q ss_pred CcCCCeeEEEEEEecCc------ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee
Q psy2145 116 IPEDSGTYTCRAVNLVG------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS 189 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 189 (808)
+.+|+|.|+|.+.+..+ .....+.|.|..... ...+|.+...
T Consensus 82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~--------------------------------~~~~P~v~~~ 129 (253)
T 3to4_D 82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK--------------------------------NVFPPEVAVF 129 (253)
T ss_dssp SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCST--------------------------------TCBCCEEEEE
T ss_pred ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCC--------------------------------CCCCCeEEEe
Confidence 99999999999987643 112234666653210 1346666544
Q ss_pred -cCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEe-------cCce----EEEEEccCCCCC-cEE
Q psy2145 190 -LKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETN-------NFGF----VALDIMQCLPED-SGV 255 (808)
Q Consensus 190 -~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~-------~~~~----~~L~I~~~~~~D-~G~ 255 (808)
+....+.+|+.++|.|.+.+ ..|.+ .|.|+|||.++..+....... .++. ..|.|.....+| .|.
T Consensus 130 ~~~~~~~~~g~~~~L~C~~~g-~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ 208 (253)
T 3to4_D 130 EPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH 208 (253)
T ss_dssp ECCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCE
T ss_pred CCChhhcccCCceEEEEEEce-EECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCE
Confidence 34445567899999999964 24554 899999999986543211100 2222 368888887777 779
Q ss_pred EEEEEEeC
Q psy2145 256 YTCRAVNA 263 (808)
Q Consensus 256 Y~C~a~n~ 263 (808)
|+|.|.|.
T Consensus 209 ytC~v~h~ 216 (253)
T 3to4_D 209 FRCQVQFY 216 (253)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999985
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=132.59 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=81.7
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.+ ..+.+|+.+.|.|.+ .|.|.|.|||||..|..+.++.+..++..++|.|.++..+|+|.|+|.|.
T Consensus 7 p~~~~~~~~~-~~v~~G~~v~l~C~v----~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (100)
T 2yuz_A 7 GLKILTPLTD-QTVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD 81 (100)
T ss_dssp CCCCSBCCCC-EEEETTSCCCEEEEC----SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred CCEEeccCCc-eEEcCCCCEEEEEEe----CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence 3566666554 679999999999986 68899999999999999999999998888999999999999999999999
Q ss_pred eCCcceEEEEEEEEEeCCC
Q psy2145 715 NRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~ 733 (808)
|. ..+.++.|.|..+|.
T Consensus 82 N~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 82 AY--NVTLPAKVHVISGPS 98 (100)
T ss_dssp SS--CCCEEEEEEEECCSC
T ss_pred CC--CeeEEEEEEEeCCCC
Confidence 98 677899999998864
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=156.73 Aligned_cols=177 Identities=13% Similarity=0.198 Sum_probs=118.5
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee------------ccCcEEEEee-CCeEEEEEc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT------------IGHRFRPIHD-FGYVALDII 113 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~------------~~~r~~~~~~-~~~~~L~I~ 113 (808)
+...|..+ .+.+|++++|.|.+. .+.+.+.|||+. . .+. ...|+.+..+ .+..+|.|.
T Consensus 6 v~q~p~~v-~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~ 81 (252)
T 1oga_E 6 ITQSPKYL-FRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVT 81 (252)
T ss_dssp EECSCSEE-EEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEEC
T ss_pred ceEcCCeE-EEcCCCcEEEEEEeC---CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEEC
Confidence 34556777 899999999999985 346799999842 1 111 1356666542 345689999
Q ss_pred ccCcCCCeeEEEEEEecC---cceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEee-
Q psy2145 114 DTIPEDSGTYTCRAVNLV---GFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTS- 189 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~- 189 (808)
+++.+|+|.|.|.+.|.. ......+.|.|.... ....+|.+...
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------~~~~~P~v~~~~ 129 (252)
T 1oga_E 82 SAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDL--------------------------------KNVFPPEVAVFE 129 (252)
T ss_dssp SCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCG--------------------------------GGCBCCEEEEEC
T ss_pred cCChhhCEEEEEEEecCCccceeECCCEEEEEeccc--------------------------------CCCCCCeEEEEC
Confidence 999999999999999852 111223456665310 01346777654
Q ss_pred cCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE---E----EecCce----EEEEEccCCCC-CcEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT---E----TNNFGF----VALDIMQCLPE-DSGVY 256 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~---~----~~~~~~----~~L~I~~~~~~-D~G~Y 256 (808)
+....+.+|+.++|.|.+.+ ..|. +.|.|+|||..+..+.... . ...++. ..|.|...... |.|.|
T Consensus 130 ~~~~~~~~g~~~~L~C~~~g-~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~y 208 (252)
T 1oga_E 130 PSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHF 208 (252)
T ss_dssp CCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEE
T ss_pred CChhhhccCCceEEEEEEee-EcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEE
Confidence 44455678999999999953 2354 6999999999986543211 0 012232 24788776654 67899
Q ss_pred EEEEEeCce
Q psy2145 257 TCRAVNALG 265 (808)
Q Consensus 257 ~C~a~n~~g 265 (808)
+|.|.|...
T Consensus 209 tC~v~~~~l 217 (252)
T 1oga_E 209 RCQVQFYGL 217 (252)
T ss_dssp EEEEEECCB
T ss_pred EEEEEcCCC
Confidence 999999654
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=153.13 Aligned_cols=171 Identities=15% Similarity=0.276 Sum_probs=113.4
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC--Ee---c------------CCCCCeEEEee-CcEEEEEECCCCCCCCEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KP---L------------EDSSRITTKHD-FGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~---l------------~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~ 576 (808)
.+.+|++++|.|.+ . .+.+.+.|+|+. .. + ....|+.+..+ .+...|.|.+++.+|+|.
T Consensus 14 ~v~~G~~v~L~C~~--~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~ 90 (252)
T 1oga_E 14 FRKEGQNVTLSCEQ--N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF 90 (252)
T ss_dssp EEETTCCEEECCEE--C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred EEcCCCcEEEEEEe--C-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence 68999999999998 3 457899999853 11 1 01346655432 334579999999999999
Q ss_pred EEEEEEeCC---eeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce
Q psy2145 577 YICKATNAL---GEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653 (808)
Q Consensus 577 Y~C~a~N~~---G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 653 (808)
|.|.+.|.. ........|.|..... ...+|.+.........+.+|+.
T Consensus 91 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~------------------------------~~~~P~v~~~~~~~~~~~~g~~ 140 (252)
T 1oga_E 91 YLCASSSRSSYEQYFGPGTRLTVTEDLK------------------------------NVFPPEVAVFEPSEAEISHTQK 140 (252)
T ss_dssp EEEEEESSTTSCCEECCCEEEEEESCGG------------------------------GCBCCEEEEECCCHHHHHHHSE
T ss_pred EEEEEecCCccceeECCCEEEEEecccC------------------------------CCCCCeEEEECCChhhhccCCc
Confidence 999999962 1111224566654210 0124666554333345668999
Q ss_pred EEEEEEEeeCCC-CC-eEEEEEECCEEccCCCcEE---E-----EEeCC---EEEEEEccCCCC-CcEEEEEEEEeCCcc
Q psy2145 654 AHYDCRVVPVGD-PT-MRFEWFVNGVELKMGSRFH---V-----QHDFG---YVTLDITKCVPA-DSGVYMCKAINRAGE 719 (808)
Q Consensus 654 v~l~C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~~---~-----~~~~~---~~~L~I~~v~~~-D~G~Y~C~A~N~~G~ 719 (808)
++|.|.+ .|. |. +.|.|+|||..|..+.... . ..++. .+.|.|...... |.|.|+|.|.|..+.
T Consensus 141 ~~L~C~~--~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 141 ATLVCLA--TGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp EEEEEEE--EEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred eEEEEEE--eeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 9999999 564 65 5999999999887543211 0 01111 235888776654 678999999998764
Q ss_pred e
Q psy2145 720 A 720 (808)
Q Consensus 720 ~ 720 (808)
.
T Consensus 219 ~ 219 (252)
T 1oga_E 219 E 219 (252)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=131.68 Aligned_cols=100 Identities=26% Similarity=0.454 Sum_probs=87.2
Q ss_pred ccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeC-CEEEEEEccCCCCCcEEE
Q psy2145 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDF-GYVTLDITKCVPADSGVY 709 (808)
Q Consensus 632 ~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y 709 (808)
...+|.|+..+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+.. ..++.+..++ +.++|.|.++..+|+|.|
T Consensus 12 ~~~~p~f~~~p~~-~~v~~G~~v~L~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (116)
T 2kkq_A 12 HKRAPMFIYKPQS-KKVLEGDSVKLECQI--SAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88 (116)
T ss_dssp CCBCCCBSSCCCC-EEEETTEEEEEEEEB--CCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEE
T ss_pred CCCCCeEEeCCCc-EEEeCCCcEEEEEEE--eccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEE
Confidence 3456888877765 679999999999999 7999999999999999985 5778776654 566999999999999999
Q ss_pred EEEEEeCCcceEEEEEEEEEeCCCc
Q psy2145 710 MCKAINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 710 ~C~A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
+|.|.|..|..+.++.|.|..+|..
T Consensus 89 ~C~a~N~~G~~~~~~~l~V~~~p~~ 113 (116)
T 2kkq_A 89 TVSAVNEAGVTTCNTRLDVTARPNQ 113 (116)
T ss_dssp EEEEEETTEEEEEEEEEEEECCSCC
T ss_pred EEEEEcCCCeEEEEEEEEEeCCCCC
Confidence 9999999999999999999988754
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=131.35 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=73.7
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-------CEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-------GYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
...+..+.|.|.+ .|+|.|.|+|+|||++|..+.++.+.... ...+|.|.++...|+|.|+|+|+|.+|.+
T Consensus 12 ~~~~~~~~l~c~v--~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 89 (126)
T 1he7_A 12 AVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 89 (126)
T ss_dssp CCCCCEEEEEEEE--CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE
T ss_pred CccCccEEEEEEE--eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE
Confidence 3467899999999 89999999999999999988876554321 24689999999999999999999999999
Q ss_pred EEEEEEEEEeCCCc
Q psy2145 721 VSSTSLKVKSKSDI 734 (808)
Q Consensus 721 ~~s~~l~V~~~p~~ 734 (808)
..++.|.|...|.-
T Consensus 90 ~~t~~l~v~~~P~~ 103 (126)
T 1he7_A 90 SASIMAAFMDNPFE 103 (126)
T ss_dssp EEEEEECCCSCTTS
T ss_pred EEEEEEEEEcCCCC
Confidence 99999999887743
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-15 Score=146.60 Aligned_cols=182 Identities=13% Similarity=0.162 Sum_probs=117.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee--------------ccCcEEEEeeC--CeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT--------------IGHRFRPIHDF--GYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~--------------~~~r~~~~~~~--~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+...+...+.|||.. . .+. ...|+.+..+. +.++|.
T Consensus 4 v~q~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (226)
T 3mlr_H 4 LVESGGE-VKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQ 82 (226)
T ss_dssp EEECCCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEE
T ss_pred EEcCCCE-EEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEE
Confidence 3456666 899999999999997422345689999832 1 110 12577765443 667899
Q ss_pred EcccCcCCCeeEEEEEEecCcc---------eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCC
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVGF---------AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQ 182 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g~---------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (808)
|.+++.+|+|.|.|.+.+..+. ....+.|.|... ...
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~----------------------------------~~~ 128 (226)
T 3mlr_H 83 WTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSG----------------------------------TTK 128 (226)
T ss_dssp ESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCC----------------------------------CCB
T ss_pred ECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccC----------------------------------CCC
Confidence 9999999999999999874210 012234555421 134
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCc----eEEEEEccCCCCCcEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFG----FVALDIMQCLPEDSGVY 256 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~I~~~~~~D~G~Y 256 (808)
+|.+...+....+.+|+.++|.|.+.+...+.+.+.| ++..+..+... .....+| ...|.|.....+| |.|
T Consensus 129 ~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y 205 (226)
T 3mlr_H 129 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY 205 (226)
T ss_dssp CCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCC
T ss_pred CCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeE
Confidence 6767654445556789999999999753322678999 44433211100 0111122 1268999999999 999
Q ss_pred EEEEEeCceeEEEEEE
Q psy2145 257 TCRAVNALGQAVTSGN 272 (808)
Q Consensus 257 ~C~a~n~~g~~~~~~~ 272 (808)
+|.|.|..+.......
T Consensus 206 tC~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 206 ICNVNHKPSNTKVDKK 221 (226)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred EEEEEECCCCcCeEEE
Confidence 9999998776554433
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=151.25 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=115.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee-------------ccCcEEEEeeC--CeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT-------------IGHRFRPIHDF--GYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~-------------~~~r~~~~~~~--~~~~L~I 112 (808)
...|..+ .+.+|++++|.|.+.+...+...+.|||.. . .|. ...|+.+..+. +.++|.|
T Consensus 5 ~q~p~~v-~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 5 EQPEISI-SRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp ECSCSEE-EEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred cccCCEE-EEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 3456677 899999999999998421256789999842 1 111 23567766543 6679999
Q ss_pred cccCcCCCeeEEEEEEec--Cc--ceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 113 IDTIPEDSGTYTCRAVNL--VG--FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n~--~g--~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
.+++.+|+|.|.|.+.+. .. .....+.|.|......+. ......|.+.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~---------------------------~~~~p~~~v~- 135 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLD---------------------------ADISPKPTIF- 135 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCC---------------------------SCCSCCCCEE-
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCc---------------------------ccCCCCceEE-
Confidence 999999999999999874 11 111235677752110000 0001122222
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEee-CCEEccCCCceEEEecCce----EEEEEccCCCCCcEEEEEEEEe
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFH-NNVPIKSGSRFTETNNFGF----VALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~-~g~~l~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
.+....+.+|+.++|.|.+.+ ..|. +.|.|++ ||..+...........++. ..|.|..... | |.|+|.|.|
T Consensus 136 ~p~~~~v~~g~~~~L~C~~~g-~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~ 212 (230)
T 1ypz_F 136 LPSVAETNLHKTGTYLCLLEA-FFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKH 212 (230)
T ss_dssp CCCHHHHHHHSCEEEEEEEEE-ESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEEC
T ss_pred CCCchhhccCCcceEEEEEee-ecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEE
Confidence 244455678999999999963 3354 6999999 8887753221111122222 3689988876 5 999999999
Q ss_pred Ccee
Q psy2145 263 ALGQ 266 (808)
Q Consensus 263 ~~g~ 266 (808)
..+.
T Consensus 213 ~~~~ 216 (230)
T 1ypz_F 213 ENNK 216 (230)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 7664
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=127.86 Aligned_cols=96 Identities=26% Similarity=0.462 Sum_probs=88.1
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..+|.|..++.+. .+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+..+++..+|.|.++..+|+|.|+|.
T Consensus 6 ~~~P~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 82 (103)
T 3qp3_A 6 DHAPRITLRMRSH-RVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82 (103)
T ss_dssp CEEEEEEECCCCE-EEETTCCEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCCEEEeCCcce-EEeCCCeEEEEEEE--EecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence 4578999888776 68999999999999 79999999999999999998899888888888999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEec
Q psy2145 581 ATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~ 599 (808)
|.|..|..+.++.|.|...
T Consensus 83 a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 83 CTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEeCCCcEEEEEEEEEECC
Confidence 9999999999999999753
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=129.36 Aligned_cols=95 Identities=31% Similarity=0.483 Sum_probs=80.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.+..+ ...++..+|.|.++..+|+|.|+|.|
T Consensus 5 ~P~~~~~p~-~~~~~~G~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 5 PPRFIQVPE-NMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp EEECCCCCC-CEEEETTCCEEEEEEC--EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEeCCC-CEEecCCCEEEEEEEE--EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 466655543 3678999999999999 6999999999999999988765433 34566789999999999999999999
Q ss_pred EeCCcceEEEEEEEEEeCC
Q psy2145 714 INRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~~~p 732 (808)
.|..|..+.++.|.|..++
T Consensus 82 ~n~~g~~~~~~~l~V~~~e 100 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVLAKE 100 (100)
T ss_dssp EETTEEEEEEEEEEEECCC
T ss_pred EcCCCeEEEEEEEEEEecC
Confidence 9999999999999998763
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=124.78 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=78.4
Q ss_pred CccccCCceEEEEEEEeeCCC-CCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGD-PTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
...+.+|+.+.|.|.+ .|. |.|.|.|+|+|..+..+.++.+...++.++|.|.++..+|+|.|+|.|.|.+|....+
T Consensus 10 ~~~v~~G~~v~l~C~~--~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 87 (97)
T 2bk8_A 10 HAVGEEGGHVKYVCKI--ENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87 (97)
T ss_dssp CEEECTTCCEEEEEEE--ESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred CEEEcCCCcEEEEEEE--eccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEE
Confidence 4678999999999999 786 9999999999999999999999888888999999999999999999999999999999
Q ss_pred EEEEEEe
Q psy2145 724 TSLKVKS 730 (808)
Q Consensus 724 ~~l~V~~ 730 (808)
+.|.|.+
T Consensus 88 ~~l~V~~ 94 (97)
T 2bk8_A 88 AELFVKG 94 (97)
T ss_dssp EEEEETT
T ss_pred EEEEEEe
Confidence 9999864
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=127.16 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=76.1
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECC--EEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNG--VELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g--~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|+| ..+.... .+....+..+|.|.++..+|+|.|+|.
T Consensus 2 ~P~i~~~~~-~~~v~~G~~~~l~C~~--~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 76 (93)
T 1wit_A 2 KPKILTASR-KIKIKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLK 76 (93)
T ss_dssp CCEECCCCC-EEEECTTBCCEEEEEE--ECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred CCeEEcCCC-ceEEeCCCEEEEEEEE--EEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEE
Confidence 466654443 4678999999999999 79999999999999 8886553 344556778999999999999999999
Q ss_pred EEeCCcceEEEEEEEEE
Q psy2145 713 AINRAGEAVSSTSLKVK 729 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~ 729 (808)
|.|..|.++.++.|.|+
T Consensus 77 a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 77 VKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred EEcCCCeEEEEEEEEEC
Confidence 99999999999999874
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=128.30 Aligned_cols=93 Identities=29% Similarity=0.500 Sum_probs=80.4
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC-cEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+. ++.+..+++.++|.|.++..+|+|.|+|.|
T Consensus 5 ~P~~~~~~~~-~~v~~G~~v~l~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 5 PPTFKVSLMD-QSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEECCCC-EEEETTCCEEEEEEE--EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEEcCCc-eEecCCCEEEEEEEE--EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence 4667666543 578999999999999 799999999999999998754 455555667779999999999999999999
Q ss_pred EeCCcceEEEEEEEEEe
Q psy2145 714 INRAGEAVSSTSLKVKS 730 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~~ 730 (808)
.|..|..+.++.|.|.+
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 82 VNEYGARQCEARLEVRG 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCceeEEEEEEEEC
Confidence 99999999999999975
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-15 Score=148.59 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=118.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EEee--------------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RPVT--------------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~l~--------------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+.......+.|||. + ..+. ...|+.+..+ .+.++|.
T Consensus 27 v~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 105 (256)
T 3sob_H 27 LVESGGG-LVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQ 105 (256)
T ss_dssp EEEECCC-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred EEecCcE-EEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEE
Confidence 3445566 79999999999999742234568999983 2 1110 1257776554 3667899
Q ss_pred EcccCcCCCeeEEEEEEecCc-----------ceEEEEEEEEecCCCccccccccccceeeeeecccccccccccccccc
Q psy2145 112 IIDTIPEDSGTYTCRAVNLVG-----------FAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETT 180 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~~g-----------~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (808)
|.+++.+|+|.|.|.+.+..| .....+.|.|....
T Consensus 106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------- 151 (256)
T 3sob_H 106 MNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS---------------------------------- 151 (256)
T ss_dssp ECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC----------------------------------
T ss_pred ECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC----------------------------------
Confidence 999999999999999987431 11223456664311
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCCce--EEEecCc----eEEEEEccCCCCCc
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRF--TETNNFG----FVALDIMQCLPEDS 253 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~I~~~~~~D~ 253 (808)
..+|.+........+.+|+.++|.|.+.+. .| ...+.| +|..+..+... .....++ ...|.|.....+|
T Consensus 152 ~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~-~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d- 227 (256)
T 3sob_H 152 TKGPSVFPLAPSSKSTSGGTAALGCLVKDY-FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT- 227 (256)
T ss_dssp CBCCEEEEECCC-----TTEEEEEEEEEEE-BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-
T ss_pred CCCCEEEEECCCcccccCCcEEEEEEEEEE-ECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-
Confidence 346666654445556789999999999642 34 568999 55544321100 0111122 1368899999999
Q ss_pred EEEEEEEEeCceeEEEEEEEEEe
Q psy2145 254 GVYTCRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 254 G~Y~C~a~n~~g~~~~~~~l~V~ 276 (808)
|.|+|.|.|..+.......|.+.
T Consensus 228 ~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 228 QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp CCCEEEEEEGGGTEEEEEECCCC
T ss_pred ceEEEEEEeCCCCcceEEEeccc
Confidence 99999999988766666665543
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-16 Score=125.39 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=71.1
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
+.+.+|+.+.|.|.+ .| |.|.|.|||||++|..+.++.+..+++.++|.|.++..+|+|.|+|.|.| .+.++.
T Consensus 6 v~~~~G~~v~l~C~v--s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~ 78 (84)
T 2lu7_A 6 VRSTPGGDLELVVHL--SG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL 78 (84)
T ss_dssp EEECTTSCEEEECCC--SC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred EEEecCCCEEEEEEE--CC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence 568899999999998 56 88999999999999999999999999899999999999999999999744 577888
Q ss_pred EEEEeC
Q psy2145 726 LKVKSK 731 (808)
Q Consensus 726 l~V~~~ 731 (808)
|.|+.|
T Consensus 79 l~V~eP 84 (84)
T 2lu7_A 79 VSVEEP 84 (84)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 988754
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=152.25 Aligned_cols=172 Identities=15% Similarity=0.261 Sum_probs=110.7
Q ss_pred cccCCCceEEEEEEeeCCC--CCcEEEEEECC--EecC----------------CCCCeEEEeeC--cEEEEEECCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGD--PTLKVEWFRNE--KPLE----------------DSSRITTKHDF--GYVAMDLSHVRAE 572 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~--P~~~v~W~k~g--~~l~----------------~~~~~~~~~~~--~~~~L~I~~v~~~ 572 (808)
.+.+|++|+|.|.+ .+. +.+.+.|||.. ..+. ...|+.+..+. +.++|.|.+++.+
T Consensus 12 ~~~~G~~v~L~C~~--~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 89 (230)
T 1ypz_F 12 SRPRDETAQISCKV--FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE 89 (230)
T ss_dssp EEETTSCEEEEEEE--CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred EEeCCCcEEEEEEe--eccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChh
Confidence 58899999999999 453 56789999842 2110 23456655432 5678999999999
Q ss_pred CCEEEEEEEEeC--Ce--eEEEEEEEEEEeccc-ccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCcc
Q psy2145 573 DEGIYICKATNA--LG--EAVTTASMKIKTKAG-LQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSE 647 (808)
Q Consensus 573 D~G~Y~C~a~N~--~G--~~~~s~~l~V~~~~~-i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 647 (808)
|+|.|.|.+.|. .. .......|.|..... +. . .....|.+.. +....
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~--~------------------------~~~p~~~v~~--p~~~~ 141 (230)
T 1ypz_F 90 DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLD--A------------------------DISPKPTIFL--PSVAE 141 (230)
T ss_dssp GCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCC--S------------------------CCSCCCCEEC--CCHHH
T ss_pred hCEEEEEEEECCCCCcccccCCCEEEEEecccccCc--c------------------------cCCCCceEEC--CCchh
Confidence 999999999985 11 111224677763110 00 0 0001132222 22234
Q ss_pred ccCCceEEEEEEEeeCCC-CC-eEEEEEE-CCEEccCCCcEEEEEeCC----EEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 648 IMEGQSAHYDCRVVPVGD-PT-MRFEWFV-NGVELKMGSRFHVQHDFG----YVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~-P~-p~i~W~~-~g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
+.+|+.++|.|.+ .|. |. +.|.|++ ||+.|..+....+...++ .+.|.|..... | |.|+|.|.|..+..
T Consensus 142 v~~g~~~~L~C~~--~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 142 TNLHKTGTYLCLL--EAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp HHHHSCEEEEEEE--EEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred hccCCcceEEEEE--eeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 6779999999999 454 75 6999999 998775432111112222 24789988775 5 99999999998754
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-16 Score=127.40 Aligned_cols=75 Identities=15% Similarity=0.321 Sum_probs=67.3
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.+.+|+.+.|.|.+ .| |.|.|.|+|||++|..+.++.+..+++.++|.|.++..+|+|.|+|.|.|. +.++.|
T Consensus 17 ~~~~g~~v~l~C~v--~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l 89 (91)
T 2lvc_A 17 HAITSECVMLACEV--DR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTV 89 (91)
T ss_dssp ECCTTCCEEEEEEC--SC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEE
T ss_pred EEECCCcEEEEEEE--CC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEE
Confidence 46789999999998 45 889999999999999999999999999999999999999999999998665 667777
Q ss_pred EE
Q psy2145 727 KV 728 (808)
Q Consensus 727 ~V 728 (808)
+|
T Consensus 90 tV 91 (91)
T 2lvc_A 90 TI 91 (91)
T ss_dssp EC
T ss_pred EC
Confidence 65
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=129.13 Aligned_cols=97 Identities=15% Similarity=0.315 Sum_probs=88.1
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.||.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+..+.++.+....+...|.|.+++.+|+|.|+|.|
T Consensus 6 ~pp~i~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (114)
T 2cqv_A 6 SGPQIIQFPEDQ-KVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLV 82 (114)
T ss_dssp CCCEESCCCCSE-EEETTCCEEEEEEE--ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred CCCEEEeCCCCe-EEeCCCeEEEEEEE--EcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence 578898877776 68999999999999 799999999999999999888888887776779999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEeccc
Q psy2145 582 TNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V~~~~~ 601 (808)
.|..|....++.|.|...|.
T Consensus 83 ~N~~g~~~~~~~l~V~~~p~ 102 (114)
T 2cqv_A 83 ENKLGSRQAQVNLTVVDKPD 102 (114)
T ss_dssp ECSSCEEECCEEEEEECSCS
T ss_pred EECCCcEEEEEEEEEECCCC
Confidence 99999999999999987654
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=146.79 Aligned_cols=172 Identities=16% Similarity=0.308 Sum_probs=112.8
Q ss_pred cccCCCceEEEEEEeeCCC----CCcEEEEEECC--E---ec-----C-----------CCCCeEEEee--CcEEEEEEC
Q psy2145 515 AVEEGKNAHFSCRLIPVGD----PTLKVEWFRNE--K---PL-----E-----------DSSRITTKHD--FGYVAMDLS 567 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~----P~~~v~W~k~g--~---~l-----~-----------~~~~~~~~~~--~~~~~L~I~ 567 (808)
.+.+|++|+|.|.+. +. +...|.|||.. . .+ . ...|+.+..+ .+.++|.|.
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 88 (232)
T 3qhz_H 11 LVKPTQTLTLTCSFS--GFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT 88 (232)
T ss_dssp EECTTSCEEEEEEEE--SCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred EECCCCcEEEEEEEe--CcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence 588999999999984 32 33445999732 1 11 0 1246766654 366789999
Q ss_pred CCCCCCCEEEEEEEEeCCe--------eEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEE
Q psy2145 568 HVRAEDEGIYICKATNALG--------EAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFT 639 (808)
Q Consensus 568 ~v~~~D~G~Y~C~a~N~~G--------~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~ 639 (808)
+++.+|+|.|.|.+.|..| .......|.|...+ ..+|.+.
T Consensus 89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------~~~P~v~ 136 (232)
T 3qhz_H 89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS--------------------------------TKGPSVF 136 (232)
T ss_dssp SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC--------------------------------CBCCEEE
T ss_pred cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC--------------------------------CCCCEEE
Confidence 9999999999999998631 12223455554211 1246555
Q ss_pred eecCCCccccCCceEEEEEEEeeCC-CC-CeEEEEEECCEEcc---------CCCcEEEEEeCCEEEEEEccCCCCCcEE
Q psy2145 640 QLLTGTSEIMEGQSAHYDCRVVPVG-DP-TMRFEWFVNGVELK---------MGSRFHVQHDFGYVTLDITKCVPADSGV 708 (808)
Q Consensus 640 ~~~~~~~~v~~G~~v~l~C~v~~~g-~P-~p~i~W~~~g~~l~---------~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 708 (808)
..... ..+..|+.++|.|.+ .| .| .+.|.|+++|..+. .+..|.+ .+.|.|......| |.
T Consensus 137 ~~~~~-~~~~~g~~v~L~C~~--~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-g~ 207 (232)
T 3qhz_H 137 PLAPS-SKSTSGGTAALGCLV--KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QT 207 (232)
T ss_dssp EECC--------CEEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGGGT-CC
T ss_pred Eeccc-ccccCCCcEEEEEEE--eeEeCCCeEEEEEECCEecceeeccceeCCCCCEEE-----EEEEEEchhhcCC-CE
Confidence 33332 346679999999999 45 34 45788999997432 1223322 2479999998889 99
Q ss_pred EEEEEEeCCcceEEEEEEEEE
Q psy2145 709 YMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 709 Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|+|.|.|..|.......|.+.
T Consensus 208 ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 208 YICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp CEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEEeCCCCccEEEEeCCC
Confidence 999999999988888777653
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=146.31 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=116.9
Q ss_pred ecCceeecCCCeEEEEEEEeecCCC--CeEEEEeeC--CEE---c---c----------------CCCceEEEec--Cce
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFHN--NVP---I---K----------------SGSRFTETNN--FGF 240 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~~--g~~---l---~----------------~~~~~~~~~~--~~~ 240 (808)
.+..+.+.+|++|+|.|.+.+...+ ...+.|||. +.. + . ...|+.+..+ .+.
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 4556789999999999999532222 568999983 211 1 1 1235554432 456
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCce-----------e--EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccc
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALG-----------Q--AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSI 307 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~ 307 (808)
++|.|.+++.+|+|.|.|.+.+..+ . ......|.|...
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~----------------------------- 136 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSA----------------------------- 136 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCC-----------------------------
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccC-----------------------------
Confidence 7899999999999999999987532 1 112345666421
Q ss_pred cccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCC-ccEEEEEECCEeccCCCcEEEEe-eCc---EEEEEEccCCC
Q psy2145 308 IEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS-KLKVTWLRNGVPIQASNRVSTMH-DFG---YVALNFKYTYP 382 (808)
Q Consensus 308 ~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~-~~~---~~~L~I~~v~~ 382 (808)
...+|.+........+..|+.+.|.|.+.. ..| ...+.|+++|..+.......... ++. .+.|.|.....
T Consensus 137 ----~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~-~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~ 211 (239)
T 3tv3_H 137 ----STKGPSVFPLAPSSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL 211 (239)
T ss_dssp ----CCBCCEEEEECCCCCC--TTEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGT
T ss_pred ----CCcCCEEEEECCChhhccCCcEEEEEEEee-EeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhc
Confidence 123555553333444567999999999942 245 35699999987542111000111 111 13688999888
Q ss_pred CCCeEEEEEEEcCCcceEEEEEEEE
Q psy2145 383 EDSGTYTCRAVNELGEAVTSSTLFV 407 (808)
Q Consensus 383 ~d~G~Y~C~a~n~~g~~~~~~~l~V 407 (808)
.| |.|+|.|.|..+.......|.+
T Consensus 212 ~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 212 GT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp TT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CC-CEEEEEEEECCCCceEEEEecc
Confidence 88 9999999999877766665554
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=141.87 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=111.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee-------ccCcEEEEee---CCeEEEEEcccCc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT-------IGHRFRPIHD---FGYVALDIIDTIP 117 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~-------~~~r~~~~~~---~~~~~L~I~~~~~ 117 (808)
...|..+ .+.+|++++|.|.+.+ .+ ..+.|||.. . .|. ...|+.+..+ .+.++|.|.+++.
T Consensus 5 ~q~p~~v-~v~~G~~v~L~C~~~~--~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 5 EQSPSAL-SLHEGTDSALRCNFTT--TM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EESCSEE-EEETTCCEEEEEEESS--CC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred EECCCeE-EEccCCcEEEEEEEeC--CC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 3456677 8999999999999984 33 379999842 2 221 3568887765 6778999999999
Q ss_pred CCCeeEEEEEEecCc---------c--eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeE
Q psy2145 118 EDSGTYTCRAVNLVG---------F--AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIF 186 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 186 (808)
+|+|.|.|.+.+..+ . ....+.|.|..... ...+|.+
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~--------------------------------~~~~P~v 128 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ--------------------------------PPAKPSV 128 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC--------------------------------CCCCCEE
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCC--------------------------------CCCCCeE
Confidence 999999999998642 1 11335777753211 0224444
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
.... + .++|.|.+.+ ..|. +.|.|+++ ..+...........+|.+++. .....+|.|.|+|.|.|..+
T Consensus 129 ~~~~-------~-~~~l~C~~~g-~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~-~~~~~~~~~~ytC~v~~~~~ 197 (207)
T 1ypz_E 129 FIMK-------N-GTNVACLVKD-FYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAV-KLGQYGDSNSVTCSVQHNSE 197 (207)
T ss_dssp EEEE-------E-TTEEEEEEEE-ESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE-ECEEESSTTTCEEEEEETTE
T ss_pred EEeC-------C-CCeEEEEEee-EeCCCeEEEEecC-CcccCCccceEEcCCCcEEEE-EeecccCCCcEEEEEEECCc
Confidence 3321 1 2699999964 3444 79999999 777544322222334544443 23334778999999999877
Q ss_pred eEE
Q psy2145 266 QAV 268 (808)
Q Consensus 266 ~~~ 268 (808)
...
T Consensus 198 ~~~ 200 (207)
T 1ypz_E 198 TVH 200 (207)
T ss_dssp EEE
T ss_pred cEe
Confidence 544
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-16 Score=155.09 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=110.1
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCC---cEEEEEECCEecCCCCC-eEE-Eee---CcEEEEEECCCCCCCCEEE
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPT---LKVEWFRNEKPLEDSSR-ITT-KHD---FGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~---~~v~W~k~g~~l~~~~~-~~~-~~~---~~~~~L~I~~v~~~D~G~Y 577 (808)
|+.++... .+.+|+.++|.|.+ .|.++ +.|.| ++..+..... ... ... .+...|.|.++..+|+|.|
T Consensus 7 ~~~~P~~~-~v~~G~~v~L~C~~--~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y 81 (214)
T 1ow0_A 7 SLHRPALE-DLLLGSEANLTCTL--TGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTF 81 (214)
T ss_dssp EEECCCHH-HHHHCSSCCCEEEE--TTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEE
T ss_pred EEECcChH-HhccCCCcEEEEEE--eeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeE
Confidence 34434444 57899999999999 67654 68999 5544432100 000 000 0234799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCceEEEE
Q psy2145 578 ICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQSAHYD 657 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~l~ 657 (808)
+|.|.|..+.......|.+.. ...+|.+.........+.+|+.++|.
T Consensus 82 ~C~~~~~~~~~~~~~~i~~~~---------------------------------~~~~P~v~~~~~~~~~~~~g~~~~L~ 128 (214)
T 1ow0_A 82 TCTAAYPESKTPLTATLSKSG---------------------------------NTFRPEVHLLPPPSEELALNELVTLT 128 (214)
T ss_dssp EEEECCSSCSSCEEEEEECCS---------------------------------SCCCCEEEEECCCTTTTTSSSEEEEE
T ss_pred EEEEecCCCCCceeEeeccCC---------------------------------CCCCCEEEecCCCHHHhccCCceEEE
Confidence 999999877543333332100 01246655444333457889999999
Q ss_pred EEEeeCCC-CC-eEEEEEECCEEccCCCcE----EEE---EeCCE---EEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 658 CRVVPVGD-PT-MRFEWFVNGVELKMGSRF----HVQ---HDFGY---VTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 658 C~v~~~g~-P~-p~i~W~~~g~~l~~~~~~----~~~---~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
|.+ .|. |. +.|.|+|||..|..+... ... .++.+ +.|.|.....+|.|.|+|.|.|..-.
T Consensus 129 C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 129 CLA--RGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp EEE--EEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred EEE--eeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 999 574 54 599999999998765211 122 22222 24455544445689999999998643
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=127.46 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=72.3
Q ss_pred ccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE--EEeCC---EEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 648 IMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV--QHDFG---YVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 648 v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~--~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
...|..+.|.|.+ .|.|.|.|.|+|||+.|..+.++.+ ...+. ..+|.|.++..+|+|.|+|.|+|.+|.++.
T Consensus 13 ~~~~~~~~~~c~v--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 90 (103)
T 1wwb_X 13 PTSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90 (103)
T ss_dssp CCCCCEEEEEEEE--ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred ceECcEEEEEEEE--EEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence 3568899999999 7999999999999999998876433 22221 346999999999999999999999999999
Q ss_pred EEEEEEEeCCCc
Q psy2145 723 STSLKVKSKSDI 734 (808)
Q Consensus 723 s~~l~V~~~p~~ 734 (808)
++.|.|..+|.+
T Consensus 91 ~~~l~V~~~P~~ 102 (103)
T 1wwb_X 91 QISAHFMGWPGI 102 (103)
T ss_dssp EEEECCSCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988753
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=130.50 Aligned_cols=97 Identities=28% Similarity=0.513 Sum_probs=84.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEe-CCEEEEEEccCCCCCcEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHD-FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||..+.. ..++.+..+ .+..+|.|.++..+|+|.|+|.
T Consensus 8 ~P~~~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 84 (110)
T 2dm2_A 8 APFFEMKLK-HYKIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM 84 (110)
T ss_dssp CCCBSSCCC-CEEEETTCCEEEEEEB--CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred CCEEEecCc-CeEEeCCCeEEEEEEE--EecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence 466666554 3578999999999999 7999999999999999986 567777665 5667999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeCCCc
Q psy2145 713 AINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
|.|.+|..+.++.|.|..+|..
T Consensus 85 a~N~~g~~~~~~~l~V~~~~~~ 106 (110)
T 2dm2_A 85 AANPQGRISCTGRLMVQAVNSG 106 (110)
T ss_dssp EECTTCCEEECCCEEEECCSCC
T ss_pred EEECCCeEEEEEEEEEECCCCC
Confidence 9999999999999999987654
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=171.73 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=117.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee------------ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT------------IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
.+.+|++++|.|.+.. +.|.+.|.|+|++..+. ...|+.+..++ +|.|.+++.+|+|.|+|.+.
T Consensus 377 ~~~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 377 TARIGEPLVLKCKGAP-KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp EEETTSCEEECCTTCC-SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred ceecCCcEEEeeeecC-CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEEEE
Confidence 7889999999999933 57888999999876321 13344443333 69999999999999999999
Q ss_pred ecCcce-EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCe-EEEEEE
Q psy2145 129 NLVGFA-EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQR-AHFECR 206 (808)
Q Consensus 129 n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~-v~L~C~ 206 (808)
|..|.. ...+.|.|...+ ..|.+.... ..+.+|+. +.|.|.
T Consensus 453 n~~~~~~~~~~~l~V~~~~-----------------------------------~~p~i~~~~--~~~~~~~~~~~l~C~ 495 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIP-----------------------------------GKPEIVDSA--SELTAGVPNKVGTCV 495 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCC-----------------------------------CCCEEESCC--SEECTTSCEEEEEEE
T ss_pred cCCCceeEEEEEEEEEcCC-----------------------------------CCCEEEcCC--cccccCCceeEEEEE
Confidence 998887 777888886432 234443332 23555555 567999
Q ss_pred EeecCCCCeEEEEeeCCEEccCCC-ceEEE----e--cCc----eEEEEEccCCC-CCcEEEEEEEEeCcee
Q psy2145 207 LIPVSDNTMKVEWFHNNVPIKSGS-RFTET----N--NFG----FVALDIMQCLP-EDSGVYTCRAVNALGQ 266 (808)
Q Consensus 207 ~~~~~~p~~~v~W~~~g~~l~~~~-~~~~~----~--~~~----~~~L~I~~~~~-~D~G~Y~C~a~n~~g~ 266 (808)
+.+ +.|.+.|+|++||.+|.... ++.+. . +.| ..+|.|..++. ++.|.|+|+|+|..+.
T Consensus 496 ~~~-~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 496 SEG-SYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEE-EBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred CCC-CCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 952 36889999999999987533 22221 1 222 23699999984 4588999999998643
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=123.52 Aligned_cols=94 Identities=29% Similarity=0.479 Sum_probs=83.4
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-eeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-HDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..+.++... ..++..+|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 80 (99)
T 1g1c_A 4 EAPKIFERIQSQ-TVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 80 (99)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCceEecCcce-EEcCCCcEEEEEEE--EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEE
Confidence 478898888776 68999999999999 79999999999999999887776554 356677899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEe
Q psy2145 581 ATNALGEAVTTASMKIKT 598 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~ 598 (808)
|.|..|....++.|.|..
T Consensus 81 a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 81 AINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCcEEEEEEEEEec
Confidence 999999999999999874
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=123.35 Aligned_cols=95 Identities=22% Similarity=0.500 Sum_probs=86.8
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+..+.++.+..+++..+|.|.++..+|+|.|+|.
T Consensus 4 ~~~P~i~~~~~~~-~v~~G~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (99)
T 3puc_A 4 SSKPVIVTGLQDT-TVSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80 (99)
T ss_dssp CEEEEEEECCCCE-EEESSSCEEEEEEE--EEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCCEEEecCccE-EEeCCCcEEEEEEE--EecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEE
Confidence 3578888888776 68999999999999 78999999999999999988999988888888999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEe
Q psy2145 581 ATNALGEAVTTASMKIKT 598 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~ 598 (808)
|.|..|....++.|.|..
T Consensus 81 a~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 81 VKNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEeCCCcEeEEEEEEEEe
Confidence 999999999999998864
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=131.32 Aligned_cols=94 Identities=21% Similarity=0.354 Sum_probs=85.1
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
..+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++.+.......+|.|.++..+|+|.|+|.
T Consensus 12 ~~~~~i~~~p~~-~~v~~G~~v~L~C~~--~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (106)
T 1nct_A 12 TLAARILTKPRS-MTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88 (106)
T ss_dssp SCCCEEEECCCC-EEESSSSCEECCEEE--ECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEEC
T ss_pred CCCCEEEECCCC-EEEeCCCcEEEEEEE--EEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEE
Confidence 356778777654 689999999999999 79999999999999999999999988877788999999999999999999
Q ss_pred EEeCCcceEEEEEEEEE
Q psy2145 713 AINRAGEAVSSTSLKVK 729 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~ 729 (808)
|.|..|..+.++.|.|+
T Consensus 89 a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 89 VENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CBCSSCBCCEEEEEEEC
T ss_pred EEeCCCeEEEEEEEEEE
Confidence 99999999999999885
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=121.21 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=79.3
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.++.+.+|++++|.|.+ .+ +.+.|.|+|||.+|..+.++.+..+++.++|.|.+++.+|+|.|+|.|
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v--~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a 79 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIEL--SE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA 79 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEE--SS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEE--CC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEE
Confidence 468999999999999999999999999 34 457899999999999888998888888889999999999999999999
Q ss_pred EeCceeEEEEEEEEEee
Q psy2145 261 VNALGQAVTSGNLLVHS 277 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~~ 277 (808)
.|. ..++.|.|..
T Consensus 80 ~n~----~~sa~L~V~~ 92 (93)
T 1waa_A 80 ANT----KSAANLKVKE 92 (93)
T ss_dssp TTE----EEEEEEEEEC
T ss_pred CCC----cEEEEEEEEc
Confidence 873 4678888863
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=125.92 Aligned_cols=92 Identities=18% Similarity=0.354 Sum_probs=82.8
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.+|.|..++.+. .+.+|+.+.|.|.+ .|.+.++|+|||..|..+.++.+..+++...|.|.++..+|+|.|+|.|
T Consensus 6 ~p~~~~~~~~~~-~v~~G~~v~l~C~v----~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (100)
T 2yuz_A 6 SGLKILTPLTDQ-TVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAP 80 (100)
T ss_dssp CCCCCSBCCCCE-EEETTSCCCEEEEC----SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEE
T ss_pred CCCEEeccCCce-EEcCCCCEEEEEEe----CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEE
Confidence 478899999887 68999999999985 7888999999999999999999988888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecc
Q psy2145 582 TNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V~~~~ 600 (808)
.|. ..+.++.|.|..+|
T Consensus 81 ~N~--~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 81 DAY--NVTLPAKVHVISGP 97 (100)
T ss_dssp SSS--CCCEEEEEEEECCS
T ss_pred cCC--CeeEEEEEEEeCCC
Confidence 998 56778899998754
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=146.14 Aligned_cols=186 Identities=10% Similarity=0.089 Sum_probs=116.0
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c--------------cCCCceEEEec--CceEEEEEc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I--------------KSGSRFTETNN--FGFVALDIM 246 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l--------------~~~~~~~~~~~--~~~~~L~I~ 246 (808)
..+..+.+.+|++|+|.|.+.+...+...+.|||. +.. + ....|+....+ .+.++|.|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 35567889999999999999532234578999983 211 1 01245655432 456789999
Q ss_pred cCCCCCcEEEEEEEEeCc----------------------eeEEEEEEEEEeeCCcccccccccchhhhhhhhhcccccc
Q psy2145 247 QCLPEDSGVYTCRAVNAL----------------------GQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQR 304 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~----------------------g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~ 304 (808)
+++.+|+|.|.|.+.+.. ......+.|.|...
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~-------------------------- 137 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSA-------------------------- 137 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSC--------------------------
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEccc--------------------------
Confidence 999999999999998742 11122356666521
Q ss_pred ccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecCCC-ccEEEEEECCEeccCCC-cEEEEeeCc---EEEEEEcc
Q psy2145 305 TSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDS-KLKVTWLRNGVPIQASN-RVSTMHDFG---YVALNFKY 379 (808)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~~~~-~~~~~~~~~---~~~L~I~~ 379 (808)
...+|.+........+..|+.++|.|.+.. ..| .+.+.|+++|..+.... ......++. .+.|.|..
T Consensus 138 -------~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~-~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~ 209 (248)
T 3u2s_H 138 -------STKGPSVFPLAPSSKSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 209 (248)
T ss_dssp -------CCBCCEEEEECCC------CEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEG
T ss_pred -------CCCCCEEEEeCCCccccCCCcEEEEEEEee-EECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEECh
Confidence 113455543333334557999999999942 245 57899999986432110 000111111 23688888
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy2145 380 TYPEDSGTYTCRAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 380 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 408 (808)
....| |.|+|.|.|..+.......|.+.
T Consensus 210 ~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 237 (248)
T 3u2s_H 210 SSLGT-QTYICNVNHKPSNTKVDKKVEPK 237 (248)
T ss_dssp GGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred hhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence 88888 99999999998877666555543
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=155.44 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=115.6
Q ss_pred cCCCCcEEEEEEEeeCC-CC-CceEEEEeCCEEeeccCcE--EEEeeC---CeEEEEEcccCcCCCeeEEEEEEecCcce
Q psy2145 62 LRERGHAHFECKLEPVT-DS-NLKVEWFKNGRPVTIGHRF--RPIHDF---GYVALDIIDTIPEDSGTYTCRAVNLVGFA 134 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~-~p-~~~v~W~~~g~~l~~~~r~--~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 134 (808)
+.+|++++|.|.+.++. .| ...|.|||++..+...... ....++ ...+|.|.++..+|+|.|+|+|.|..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 78999999999998631 13 3479999999766422110 011111 23479999999999999999999887644
Q ss_pred EEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCC
Q psy2145 135 EVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT 214 (808)
Q Consensus 135 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~ 214 (808)
.....+.+.. ....+|.+.+.+......+|+.++|.|.+.+...+.
T Consensus 260 ~~~~~v~~~~----------------------------------~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~ 305 (376)
T 2aty_A 260 PIEKTISKTK----------------------------------GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPED 305 (376)
T ss_pred ceEEEEcCCC----------------------------------CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCC
Confidence 3333332210 115678888887776667799999999996433346
Q ss_pred eEEEEeeCCEEccCCCceE--EEecCce---EEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 215 MKVEWFHNNVPIKSGSRFT--ETNNFGF---VALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 215 ~~v~W~~~g~~l~~~~~~~--~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
+.|+|+|||.++....... ...++.+ ..|.|.....+|.|.|+|+|.|..-
T Consensus 306 i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 306 ITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred cEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 7999999999885432221 1222222 3577887777889999999998643
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=123.55 Aligned_cols=92 Identities=24% Similarity=0.463 Sum_probs=83.8
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.+...+.+|+.+.|.|.+ . .|.+.|.|||||..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~--~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a- 82 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVEL--A-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA- 82 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEE--S-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE-
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEe--c-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE-
Confidence 58888887765678999999999999 5 6999999999999999999999998888889999999999999999999
Q ss_pred eCCcceEEEEEEEEEeCCC
Q psy2145 715 NRAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~ 733 (808)
|....++.|.|..+|.
T Consensus 83 ---g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 83 ---GDEKCSTELFVRSGPS 98 (100)
T ss_dssp ---TTEEEEEEEEECCSCC
T ss_pred ---CCceEEEEEEEecCCC
Confidence 8889999999998764
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=121.75 Aligned_cols=90 Identities=17% Similarity=0.321 Sum_probs=77.4
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECC--EecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
+|.|..++.+. .+.+|+.+.|.|.+ .|.|.|.|.|+|+| ..+.... ......+...|.|.++..+|+|.|+|.
T Consensus 2 ~P~i~~~~~~~-~v~~G~~~~l~C~~--~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 76 (93)
T 1wit_A 2 KPKILTASRKI-KIKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLK 76 (93)
T ss_dssp CCEECCCCCEE-EECTTBCCEEEEEE--ECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred CCeEEcCCCce-EEeCCCEEEEEEEE--EEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEE
Confidence 68887777665 68999999999999 79999999999999 8886653 333445566899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKIK 597 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~ 597 (808)
|.|..|..+.++.|.|+
T Consensus 77 a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 77 VKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred EEcCCCeEEEEEEEEEC
Confidence 99999999999988874
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=134.46 Aligned_cols=99 Identities=32% Similarity=0.584 Sum_probs=85.3
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+|.|...+.. ..+.+|+.++|.|.+ .|.|.|.|.|+|||..+..+.++.+... .+..+|.|.++..+|+|.|+|.
T Consensus 40 ~~P~~~~~~~~-~~v~~G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 116 (154)
T 1fhg_A 40 VKPYFTKTILD-MEVVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116 (154)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE--EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEccCCc-EEEeCCCeEEEEEEE--EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEE
Confidence 45777776654 679999999999999 7999999999999999999888887654 4567999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeCCCcc
Q psy2145 713 AINRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~p~~~ 735 (808)
|.|.+|....++.|.|..+|.+.
T Consensus 117 a~N~~G~~~~~~~l~V~~~p~~~ 139 (154)
T 1fhg_A 117 AVNSLGEATCTAELLVETMGKEG 139 (154)
T ss_dssp EEETTEEEEEEEEEEEECC----
T ss_pred EEECCCeEEEEEEEEEeCcCcCC
Confidence 99999999999999999887654
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=141.18 Aligned_cols=173 Identities=18% Similarity=0.327 Sum_probs=117.9
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC--E---ec--------------CCCCCeEEEeeC--cEEEEEECCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--K---PL--------------EDSSRITTKHDF--GYVAMDLSHVRAED 573 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~---~l--------------~~~~~~~~~~~~--~~~~L~I~~v~~~D 573 (808)
.+.+|++|+|.|.+.....+...+.|||.. . .+ ....|+.+..+. +.++|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D 90 (230)
T 3n9g_H 11 VRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSED 90 (230)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhh
Confidence 588999999999984212345679999732 1 11 012567665543 56789999999999
Q ss_pred CEEEEEEEEeCC-----eeE---EEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCC
Q psy2145 574 EGIYICKATNAL-----GEA---VTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGT 645 (808)
Q Consensus 574 ~G~Y~C~a~N~~-----G~~---~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~ 645 (808)
+|.|.|.+.+.. +.. .....|.|...+. .+|.+......
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~--------------------------------~~P~v~~~~~~- 137 (230)
T 3n9g_H 91 TAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST--------------------------------KGPSVFPLAPS- 137 (230)
T ss_dssp CEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC--------------------------------BCCEEEEECCC-
T ss_pred CEEEEEEEccCCCCcccccccccCCCEEEEEEecCC--------------------------------CCCEEEecCCC-
Confidence 999999999864 111 1224566643211 23555433332
Q ss_pred ccccCCceEEEEEEEeeCC-CC-CeEEEEEECCEEccC-----------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVG-DP-TMRFEWFVNGVELKM-----------GSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g-~P-~p~i~W~~~g~~l~~-----------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
..+.+|+.++|.|.+. | .| .+.|.| ||..+.. +..|.+ .+.|.|.....+| |.|+|.
T Consensus 138 ~~~~~g~~v~L~C~~~--~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~ 207 (230)
T 3n9g_H 138 SKSTSGGTAALGCLVK--DYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICN 207 (230)
T ss_dssp CCCCTTCEEEEEEEEE--EEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEE-----EEEEEEESTTBTT-BCCEEE
T ss_pred ccccCCCCEEEEEEEE--eEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEE-----EEEEEECHHHcCC-CeEEEE
Confidence 3467899999999994 4 45 568999 7766542 122222 2479999999999 999999
Q ss_pred EEeCCcceEEEEEEEEEe
Q psy2145 713 AINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~ 730 (808)
|.|..+.......|.|..
T Consensus 208 v~h~~~~~~~~~~~~v~~ 225 (230)
T 3n9g_H 208 VNHKPSNTKVDKRVEPKS 225 (230)
T ss_dssp EEEGGGTEEEEEECCCCT
T ss_pred EEECCCCcceEEEccCCC
Confidence 999999888887777653
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=152.89 Aligned_cols=179 Identities=13% Similarity=0.223 Sum_probs=115.7
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCC---CC-cEEEEEECCEecCCCCC-eEEEeeC----cEEEEEECCCCCCC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD---PT-LKVEWFRNEKPLEDSSR-ITTKHDF----GYVAMDLSHVRAED 573 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~---P~-~~v~W~k~g~~l~~~~~-~~~~~~~----~~~~L~I~~v~~~D 573 (808)
+.+|+.++.....+.+|+.++|.|.+ .|. |. ..|+|+|++..+..... ......+ ....|.|.++..+|
T Consensus 167 p~v~~~~p~~~~~~~~g~~v~L~C~~--~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D 244 (376)
T 2aty_A 167 SSVFIFPPKPKDVLTITLTPKVTCVV--VDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLN 244 (376)
T ss_pred cEEEEeCcCHHHceeeCCeeEEEEEE--eccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccC
Confidence 33445555433237889999999999 566 32 46999999976542210 0000111 22369999999999
Q ss_pred CEEEEEEEEeCCeeEEEEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCCCccccCCce
Q psy2145 574 EGIYICKATNALGEAVTTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTGTSEIMEGQS 653 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~~~~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 653 (808)
+|.|+|.|.|..+.......+.+.. ....+|.+...... ....+|+.
T Consensus 245 ~g~Y~C~~~~~~~~~~~~~~v~~~~--------------------------------~~~~~P~v~v~~~~-~~~~~g~~ 291 (376)
T 2aty_A 245 GKEFKCRVNSAAFPAPIEKTISKTK--------------------------------GRPKAPQLYTIPPP-KEQMAKDK 291 (376)
T ss_pred CCEEEEEEecCCCCCceEEEEcCCC--------------------------------CCCcCCeEEeeCCC-HHHhcCCc
Confidence 9999999999877543333332210 01124665554443 34556999
Q ss_pred EEEEEEEeeCCC--CCeEEEEEECCEEccCCCcEEE--EEeCC---EEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 654 AHYDCRVVPVGD--PTMRFEWFVNGVELKMGSRFHV--QHDFG---YVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 654 v~l~C~v~~~g~--P~p~i~W~~~g~~l~~~~~~~~--~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
++|.|.+ .|. |.+.|+|+|||+++........ ..++. .+.|.|.....+|.|.|+|.|.|..-
T Consensus 292 ~~L~C~~--~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 292 VSLTCMI--TDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred eEEEEEE--EEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 9999999 575 3579999999998854322221 22222 24677777777789999999999864
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-14 Score=125.08 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=83.2
Q ss_pred ccCCCeeeec--CCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEE
Q psy2145 500 TKQRPVFTKP--LQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 500 ~~~~P~f~~~--~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 577 (808)
...+|.|..+ +.....+.+|+.+.|.|.+ .|.|.|.|.|+|+|..+. ..++.+....+...|.|.++..+|+|.|
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~--~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 94 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPF--QGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEY 94 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEE--EEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEE
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEE--ccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEE
Confidence 3457888654 3334478999999999999 799999999999999997 5666676667777899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEecc
Q psy2145 578 ICKATNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V~~~~ 600 (808)
+|.|.|..|..+.++.|.|...|
T Consensus 95 ~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 95 ELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEEEECSSCEECCEEEEEEECCC
T ss_pred EEEEEeCCCeEEEEEEEEEEcCC
Confidence 99999999999999999998754
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-15 Score=124.65 Aligned_cols=93 Identities=28% Similarity=0.459 Sum_probs=78.5
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-CCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-GSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+|.|...+.. ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+.. +.++.+.. ++ +|.|.++..+|+|.|+|.
T Consensus 7 ~~P~i~~~p~~-~~v~~G~~~~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~~--~L~i~~v~~~d~G~Y~C~ 80 (100)
T 2edj_A 7 GPPIILQGPAN-QTLAVDGTALLKCKA--TGDPLPVISWLKEGFTFPGRDPRATIQE-QG--TLQIKNLRISDTGTYTCV 80 (100)
T ss_dssp SSCEEEECCCC-EEEESSSEEEECCEE--ECSSCCEEEEEESSSEESSSCSSCEECT-TC--CEEEESCCTTTCCEEEEE
T ss_pred CCCEEEeCcCC-EEEcCCCcEEEEEEE--EEcCCCEEEEEECCEECCCCCCCEEEcC-CC--EEEEccCCcccCEEEEEE
Confidence 35777766543 678999999999999 7999999999999999874 45555433 22 799999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeCC
Q psy2145 713 AINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~p 732 (808)
|.|..|..+.++.|.|..+|
T Consensus 81 a~n~~g~~~~~~~l~V~~~~ 100 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVTESG 100 (100)
T ss_dssp EECSSCCCBCCEEEEEESCC
T ss_pred EEcCCCCEEEEEEEEEecCC
Confidence 99999999999999998764
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=118.04 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
+.++ .+.+|+++.|.|.+. + |.+.|.|||||.+|..+.++.+..+++..+|.|.+++.+|+|.|+|.| |...
T Consensus 3 lt~v-~~~~G~~v~l~C~vs--~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~ 74 (84)
T 2lu7_A 3 MTRV-RSTPGGDLELVVHLS--G-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDS 74 (84)
T ss_dssp CCCE-EECTTSCEEEECCCS--C-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTC
T ss_pred CeEE-EEecCCCEEEEEEEC--C-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEE
Confidence 4566 899999999999986 3 777899999999999999999999988889999999999999999998 5567
Q ss_pred EEEEEEEe
Q psy2145 136 VQATLQCR 143 (808)
Q Consensus 136 ~~~~l~V~ 143 (808)
.++.|.|.
T Consensus 75 ~~a~l~V~ 82 (84)
T 2lu7_A 75 RIFLVSVE 82 (84)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEE
Confidence 78888885
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=121.82 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=79.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----------cEEEEEeCCEEEEEEccCCCC
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----------RFHVQHDFGYVTLDITKCVPA 704 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----------~~~~~~~~~~~~L~I~~v~~~ 704 (808)
+|.|...+.+ ..+.+|+.+.|.|.+ .+ .|.+.|||||++|..+. ++.+..++..++|+|.++..+
T Consensus 8 ~~~~~~~l~d-~~v~eG~~a~f~C~v--s~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~ 82 (112)
T 2e6q_A 8 TARLVAGLED-VQVYDGEDAVFSLDL--ST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82 (112)
T ss_dssp CCCEEECCCC-EEEETTCEEEEEEEE--SS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCST
T ss_pred CcEEecCCCC-eEEcCCCcEEEEEEE--CC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHH
Confidence 4778888776 689999999999999 56 77899999999999988 999988888999999999999
Q ss_pred CcEEEEEEEEeCCcceEEEEEEEEEeCCCcc
Q psy2145 705 DSGVYMCKAINRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 705 D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~ 735 (808)
|+|.|+|..- +...+++.|.|..+|...
T Consensus 83 D~G~Y~~~~~---~~~~ssA~L~V~~~p~~~ 110 (112)
T 2e6q_A 83 DSGALVGFSC---PGVQDSAALTIQESSGPS 110 (112)
T ss_dssp TCSEEEEEEE---TTEEEEEEEEEECSSCSC
T ss_pred HCccEEEEEE---CCeeEEEEEEEeCCCccc
Confidence 9999977432 445779999999988643
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=122.96 Aligned_cols=88 Identities=26% Similarity=0.384 Sum_probs=77.0
Q ss_pred EEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC--cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 638 ~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|...+. ...+.+|+.++|.|.+ .| |.+.|.|+|||..|..+. +|.+..++...+|.|.++..+|+|.|+|.|.|
T Consensus 10 ~~~~~~-~~~v~~G~~v~l~C~~--~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 85 (103)
T 1x44_A 10 VTKQLE-DTTAYCGERVELECEV--SE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85 (103)
T ss_dssp CSBCCC-CEEEETTEEEEEEEEC--SS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred eeccCC-CEEEECCCCEEEEEEe--cC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence 444444 3678899999999999 67 779999999999999888 77998888889999999999999999999988
Q ss_pred CCcceEEEEEEEEEeCCC
Q psy2145 716 RAGEAVSSTSLKVKSKSD 733 (808)
Q Consensus 716 ~~G~~~~s~~l~V~~~p~ 733 (808)
.+.++.|.|..+|.
T Consensus 86 ----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 86 ----GQSSAKLSVDLKSG 99 (103)
T ss_dssp ----EEEEEEEEEECCCS
T ss_pred ----CcEEEEEEEeCCCC
Confidence 58889999998875
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-15 Score=148.67 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=111.0
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCC--CceEEEEeCCEEeeccCcEE-E-EeeC---CeEEEEEcccCcCCCeeEE
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDS--NLKVEWFKNGRPVTIGHRFR-P-IHDF---GYVALDIIDTIPEDSGTYT 124 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p--~~~v~W~~~g~~l~~~~r~~-~-~~~~---~~~~L~I~~~~~~D~G~Y~ 124 (808)
++..|..+ .+.+|++++|.|.+.+. .| .+.|.| ++..+....... . ..++ ...+|.|.++..+|+|.|+
T Consensus 7 ~~~~P~~~-~v~~G~~v~L~C~~~g~-~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~ 82 (214)
T 1ow0_A 7 SLHRPALE-DLLLGSEANLTCTLTGL-RDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFT 82 (214)
T ss_dssp EEECCCHH-HHHHCSSCCCEEEETTC-CSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEE
T ss_pred EEECcChH-HhccCCCcEEEEEEeee-ECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEE
Confidence 34557776 78999999999999852 33 268999 444433210000 0 0011 3357999999999999999
Q ss_pred EEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeec-CceeecCCCeEEE
Q psy2145 125 CRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSL-KNCEIKEGQRAHF 203 (808)
Q Consensus 125 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~v~~G~~v~L 203 (808)
|.|.|..+.......|.+. ....+|.+.+.+ ....+.+|+.++|
T Consensus 83 C~~~~~~~~~~~~~~i~~~-----------------------------------~~~~~P~v~~~~~~~~~~~~g~~~~L 127 (214)
T 1ow0_A 83 CTAAYPESKTPLTATLSKS-----------------------------------GNTFRPEVHLLPPPSEELALNELVTL 127 (214)
T ss_dssp EEECCSSCSSCEEEEEECC-----------------------------------SSCCCCEEEEECCCTTTTTSSSEEEE
T ss_pred EEEecCCCCCceeEeeccC-----------------------------------CCCCCCEEEecCCCHHHhccCCceEE
Confidence 9999987654333333210 014567765544 3345778999999
Q ss_pred EEEEeecCCC-CeEEEEeeCCEEccCCCceE---EEe---cCceE----EEEEccCCCCCcEEEEEEEEeCce
Q psy2145 204 ECRLIPVSDN-TMKVEWFHNNVPIKSGSRFT---ETN---NFGFV----ALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 204 ~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~~---~~~---~~~~~----~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
.|.+.+ ..| .+.|.|+|||..+..+.... ... .+|.+ .|.|.....+|.|.|+|+|.|...
T Consensus 128 ~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 128 TCLARG-FSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp EEEEEE-ESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred EEEEee-eECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 999964 234 46999999999986552111 222 33322 345554444568999999999643
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-15 Score=128.28 Aligned_cols=99 Identities=30% Similarity=0.460 Sum_probs=85.0
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-eCCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-DFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+|.|...+. ...+.+|+.++|.|.+ .|.|.|.|.|+|||..+..+.++.+.. ..+..+|.|.++..+|+|.|+|.
T Consensus 8 ~~P~i~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 84 (110)
T 2dm3_A 8 FRPHFLQAPG-DLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84 (110)
T ss_dssp CCCEEEECCC-EEEEESSSCBCCEEEE--ECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEE
T ss_pred CCCcEEeCCC-cEEEeCCCEEEEEEEE--EEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEE
Confidence 4688877654 4679999999999999 799999999999999998776655443 44567999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeCCCcc
Q psy2145 713 AINRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~p~~~ 735 (808)
|.|..|..+.++.|.|..+|..+
T Consensus 85 a~n~~g~~~~~~~l~V~~~p~~P 107 (110)
T 2dm3_A 85 ATNRAGQNSFSLELVVAAKESGP 107 (110)
T ss_dssp EECSSCEEEECCEEEEECCCCSS
T ss_pred EECCCCEEEEEEEEEEeCCCCCC
Confidence 99999999999999999887643
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=120.16 Aligned_cols=88 Identities=14% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCCeeeecCCCcc-cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNID-AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~-~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.||.|+.|+.+.. .+.+|+.+.|.|.+ .+ |.+.|+|+|||++|..+.++.+..+++..+|.|.++..+|+|.|+|.
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v--~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEV--DR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCV 79 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEEC--SC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEE--CC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEE
Confidence 4677777777642 45689999999998 55 88899999999999999999999999988999999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKI 596 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V 596 (808)
|.|. +++++|+|
T Consensus 80 a~n~----~~~~~ltV 91 (91)
T 2lvc_A 80 AGDE----CAYFTVTI 91 (91)
T ss_dssp CSSC----EEEEEEEC
T ss_pred Ecce----EEEEEEEC
Confidence 9775 55566654
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-15 Score=127.76 Aligned_cols=95 Identities=22% Similarity=0.377 Sum_probs=70.4
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|+|..+..+.++.+.... .+|.|.++..+|+|.|+|.|.
T Consensus 10 ~P~~~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~ 84 (108)
T 3kvq_A 10 APTITGNLE-NQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQAC 84 (108)
T ss_dssp -CCCBSCCC-CEEEETTCCEEEECBC--C----CCEEEEESSSBCCCBTTEEEETTT--TEEEECSCCGGGCEEEEEEEC
T ss_pred CCceecCCC-CeEEeCCCeEEEEEEC--cCcCCCeEEEEECCeEcccCCCeEEeCCC--cEEEEeecCcccCEEEEEEEE
Confidence 455655443 3578899999999999 79999999999999999887777664433 489999999999999999999
Q ss_pred eCCcceEEEEEEEEEeCCCc
Q psy2145 715 NRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~~ 734 (808)
|..|....++.|.|.++|..
T Consensus 85 n~~g~~~~~~~l~V~~~~~~ 104 (108)
T 3kvq_A 85 SVLGCAKVEAFFIIEGAQEK 104 (108)
T ss_dssp ----CEEEEEEEEEEC----
T ss_pred eCCCceEEEEEEEEeCCCcc
Confidence 99999999999999988653
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=125.19 Aligned_cols=95 Identities=18% Similarity=0.339 Sum_probs=75.3
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCC---CCeEEEEEECCE-Ecc--CCCcEEEEEeC------CEEEEEEccCCC
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGD---PTMRFEWFVNGV-ELK--MGSRFHVQHDF------GYVTLDITKCVP 703 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~---P~p~i~W~~~g~-~l~--~~~~~~~~~~~------~~~~L~I~~v~~ 703 (808)
|.|+..+.+ ..+.+|+.++|.|.+ .|. |.|.|.|||++. ++. .+.++.+.... ...+|.|.++..
T Consensus 8 ~~F~~~P~~-v~V~eG~~v~L~C~v--~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 84 (126)
T 2dav_A 8 ILFIEKPQG-GTVKVGEDITFIAKV--KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84 (126)
T ss_dssp CSCCSCCCC-CEEETTCCEEEEEEE--ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred cEEEEcCCC-eEEeCCCCEEEEEEE--eccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc
Confidence 556666644 679999999999999 454 899999999752 121 24566664321 247999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEe-CCC
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKS-KSD 733 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~-~p~ 733 (808)
.|+|.|+|+|+|..|..++++.|.|.. ++.
T Consensus 85 ~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~ 115 (126)
T 2dav_A 85 NFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115 (126)
T ss_dssp TSCEEEEEEEECSSCEEEECCEEEEECCCCS
T ss_pred ccCEEEEEEEEeCCCcEEEEEEEEEEecCCC
Confidence 999999999999999999999999998 543
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-14 Score=119.87 Aligned_cols=95 Identities=31% Similarity=0.558 Sum_probs=82.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC-ceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS-RFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..||.|...+.+..+.+|++++|.|.+ .+.|.+.|.|+|+|..+.... ++....+++..+|.|.+++.+|+|.|+|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (99)
T 1u2h_A 3 KAPPTFKVSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCK 80 (99)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEE--EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEEcCCceEecCCCEEEEEEEE--EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEE
Confidence 457899999999999999999999999 577888999999999987654 45555566777899999999999999999
Q ss_pred EEeCceeEEEEEEEEEee
Q psy2145 260 AVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~ 277 (808)
|.|..|....++.|.|..
T Consensus 81 a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 81 AVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCceeEEEEEEEEC
Confidence 999999999999998864
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=123.49 Aligned_cols=99 Identities=25% Similarity=0.444 Sum_probs=86.4
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEeeC-cEEEEEECCCCCCCCEEE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHDF-GYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y 577 (808)
...+|.|+..+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+.. ..++.+..++ +.++|.|.+++.+|+|.|
T Consensus 12 ~~~~p~f~~~p~~~-~v~~G~~v~L~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (116)
T 2kkq_A 12 HKRAPMFIYKPQSK-KVLEGDSVKLECQI--SAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88 (116)
T ss_dssp CCBCCCBSSCCCCE-EEETTEEEEEEEEB--CCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEE
T ss_pred CCCCCeEEeCCCcE-EEeCCCcEEEEEEE--eccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEE
Confidence 34589999988887 69999999999999 8999999999999999875 4677666543 556899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 578 ICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
+|.|.|..|....++.|.|...|.
T Consensus 89 ~C~a~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 89 TVSAVNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp EEEEEETTEEEEEEEEEEEECCSC
T ss_pred EEEEEcCCCeEEEEEEEEEeCCCC
Confidence 999999999999999999987654
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=123.62 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=79.9
Q ss_pred CCeEEeecCCC--ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 635 KPIFTQLLTGT--SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 635 ~P~~~~~~~~~--~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.+...+... ..+.+|+.++|.|.+ .|.|.+ |.|+|||+.+..+.++.+..++....|.|.++..+|+|.|+|.
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~--~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 83 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCEL--SRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECR 83 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEEC--SSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEe--cCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEE
Confidence 45555554443 468899999999999 799999 9999999999999999999888889999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeCCCc
Q psy2145 713 AINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
|.|..| ++.|.|..+|..
T Consensus 84 a~n~~~----~~~l~V~~~P~p 101 (104)
T 2e6p_A 84 TEGVSA----FFGVTVQDPSGP 101 (104)
T ss_dssp CSSCCC----CEEEEEECCCCS
T ss_pred ECCceE----EEEEEEcCCCCC
Confidence 999854 778888887753
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=120.96 Aligned_cols=95 Identities=26% Similarity=0.489 Sum_probs=80.8
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCe-EEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+....+. ......+...|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~~~~~p~~~-~~~~G~~~~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 80 (100)
T 2kdg_A 4 GPPRFIQVPENM-SIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACV 80 (100)
T ss_dssp EEEECCCCCCCE-EEETTCCEEEEEEC--EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEeCCCCE-EecCCCEEEEEEEE--EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEE
Confidence 467887777665 68999999999999 78999999999999998876543 233445667899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEec
Q psy2145 581 ATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~ 599 (808)
|.|..|..+.++.|.|..+
T Consensus 81 a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 81 AKNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEcCCCeEEEEEEEEEEec
Confidence 9999999999999999764
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=125.19 Aligned_cols=91 Identities=27% Similarity=0.428 Sum_probs=80.3
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+.. ..+.+|+.+.|.|.+ .|. |.|.|||||..|..+.++.+..++..+.|.|.++..+|+|.|+|.|
T Consensus 20 p~~~~~~~~-~~v~~G~~v~l~C~~--~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-- 92 (113)
T 2edh_A 20 IKFTEGLRN-EEATEGATAVLRCEL--SKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC-- 92 (113)
T ss_dssp CCEEECCCC-CEECTTSCEEEEEEE--SSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE--
T ss_pred CcccccCCc-eEEeCCCeEEEEEEE--CCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe--
Confidence 567666554 679999999999999 665 6799999999999999999999988899999999999999999999
Q ss_pred CCcceEEEEEEEEEeCCCcc
Q psy2145 716 RAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 716 ~~G~~~~s~~l~V~~~p~~~ 735 (808)
|....++.|.|..+|..+
T Consensus 93 --~~~~~~~~l~V~~~p~~~ 110 (113)
T 2edh_A 93 --GKERTSAMLTVRAMPSGP 110 (113)
T ss_dssp --TTEEEEEEEEECCCCCSS
T ss_pred --CCCCEEEEEEEeCCCCCc
Confidence 888999999999887654
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=117.06 Aligned_cols=89 Identities=22% Similarity=0.457 Sum_probs=79.2
Q ss_pred eecCCCcccccCCCceEEEEEEeeCCC-CCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 507 TKPLQNIDAVEEGKNAHFSCRLIPVGD-PTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 507 ~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
..++.+. .+.+|+.+.|.|.+ .|. |.+.|.|+|++..+..+.++.+...++...|.|.+++.+|+|.|+|.|.|..
T Consensus 5 ~~~~~~~-~v~~G~~v~l~C~~--~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (97)
T 2bk8_A 5 SGQIMHA-VGEEGGHVKYVCKI--ENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDY 81 (97)
T ss_dssp ECCCCCE-EECTTCCEEEEEEE--ESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred eccCcCE-EEcCCCcEEEEEEE--eccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCC
Confidence 3344444 68999999999999 686 9999999999999999889888778888899999999999999999999999
Q ss_pred eeEEEEEEEEEEe
Q psy2145 586 GEAVTTASMKIKT 598 (808)
Q Consensus 586 G~~~~s~~l~V~~ 598 (808)
|....++.|.|..
T Consensus 82 g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 82 GEDSSYAELFVKG 94 (97)
T ss_dssp CEEEEEEEEEETT
T ss_pred CeEeEEEEEEEEe
Confidence 9999999998864
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=135.79 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=106.6
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCC--E---Ec-------cCCCceEEEec---CceEEEEEccCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNN--V---PI-------KSGSRFTETNN---FGFVALDIMQCLP 250 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g--~---~l-------~~~~~~~~~~~---~~~~~L~I~~~~~ 250 (808)
+...+..+.+.+|++|+|.|.+. +.+ ..+.|||.. . .+ ....|+....+ .+..+|.|.+++.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~--~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFT--TTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEES--SCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCeEEEccCCcEEEEEEEe--CCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 34456678899999999999994 333 479999842 2 11 12356666654 5677999999999
Q ss_pred CCcEEEEEEEEeCce---------e--EEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeec
Q psy2145 251 EDSGVYTCRAVNALG---------Q--AVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFT 319 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~ 319 (808)
+|+|.|.|.+.+..+ . ....+.|.|..... ...+|.+.
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~-------------------------------~~~~P~v~ 129 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ-------------------------------PPAKPSVF 129 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC-------------------------------CCCCCEEE
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCC-------------------------------CCCCCeEE
Confidence 999999999998642 1 11235777764210 00123221
Q ss_pred cCCCceEeecCCeEEEEEEEeecCCCc-cEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCcc
Q psy2145 320 QPMRDIHVAENQAAHFEARLIPVGDSK-LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGE 398 (808)
Q Consensus 320 ~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g~ 398 (808)
+..+ .+.|.|.+. ...|. +.|+|+++ ..+...........++...+. .....+|.|.|+|.|.|..+.
T Consensus 130 -------~~~~-~~~l~C~~~-g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~-~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 130 -------IMKN-GTNVACLVK-DFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAV-KLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp -------EEEE-TTEEEEEEE-EESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE-ECEEESSTTTCEEEEEETTEE
T ss_pred -------EeCC-CCeEEEEEe-eEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEE-EeecccCCCcEEEEEEECCcc
Confidence 1122 279999983 23454 79999999 666544222222233433332 222336789999999998765
Q ss_pred e
Q psy2145 399 A 399 (808)
Q Consensus 399 ~ 399 (808)
.
T Consensus 199 ~ 199 (207)
T 1ypz_E 199 V 199 (207)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=124.18 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=80.1
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT-MRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
|.|...+. ...+.+|+.++|.|.+ .|.|. +.|.|||||.+|..+.++.+..++..++|.|.++..+|+|.|+|.|
T Consensus 9 ~~~~~~~~-~~~v~~G~~v~l~C~v--~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a- 84 (104)
T 2eny_A 9 VGITKRLK-TMEVLEGESCSFECVL--SHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV- 84 (104)
T ss_dssp CCCSBCCC-CEEEESSCCEEEEEEC--SSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE-
T ss_pred CEEEecCC-CcEEcCCCcEEEEEEE--cCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE-
Confidence 45555554 3679999999999999 78774 5899999999999999999999988999999999999999999997
Q ss_pred eCCcceEEEEEEEEEeCCCcc
Q psy2145 715 NRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~~~ 735 (808)
|....++.|.|..+|...
T Consensus 85 ---~~~~~~a~L~V~~~p~~~ 102 (104)
T 2eny_A 85 ---RGLTSKASLIVRERSGPS 102 (104)
T ss_dssp ---TTEEEEECEEEECCCSSC
T ss_pred ---CCeeEEEEEEEeCCCcCC
Confidence 446789999999988643
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=122.69 Aligned_cols=90 Identities=30% Similarity=0.586 Sum_probs=77.1
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
.+|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||..+...... ...+..+|.|.++..+|+|.|+|.|
T Consensus 10 ~~P~~~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a 83 (99)
T 2yr3_A 10 VAPSFSSVLK-DCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLA 83 (99)
T ss_dssp EEEEEEECCC-CEEECTTCCEEEECEE--EEESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEE
T ss_pred cCCceeecCC-CCEEeCCCeEEEEEEE--eeeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEE
Confidence 4577777654 4679999999999999 79999999999999998866542 2456679999999999999999999
Q ss_pred EeCCcceEEEEEEEEE
Q psy2145 714 INRAGEAVSSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~ 729 (808)
.|..|..+.++.|.|+
T Consensus 84 ~N~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 84 ENALGQVSCSAWVTVH 99 (99)
T ss_dssp ECSSCEEEEECCEEEC
T ss_pred EECCCeEEEEEEEEEC
Confidence 9999999999988874
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=122.97 Aligned_cols=99 Identities=25% Similarity=0.504 Sum_probs=85.2
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEee-CcEEEEEECCCCCCCCEEE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHD-FGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y 577 (808)
...+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+.. ..++.+... .+...|.|.+++.+|+|.|
T Consensus 5 ~~~~P~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm2_A 5 SSGAPFFEMKLKHY-KIFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81 (110)
T ss_dssp CSCCCCBSSCCCCE-EEETTCCEEEEEEB--CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCC
T ss_pred CCCCCEEEecCcCe-EEeCCCeEEEEEEE--EecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEE
Confidence 34588888888776 68999999999999 8999999999999999876 456666654 5666899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 578 ICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
+|.|.|..|....++.|.|...+.
T Consensus 82 ~C~a~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 82 TIMAANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp EEEEECTTCCEEECCCEEEECCSC
T ss_pred EEEEEECCCeEEEEEEEEEECCCC
Confidence 999999999999999999987543
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=121.19 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=73.6
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.| |.|.|+|||..+..+.++.+. ++ .|.|.++..+|+|.|+|.|.
T Consensus 9 pp~~~~~~~-~~~v~~G~~v~l~C~~--~g~p-p~i~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~ 80 (95)
T 2ckn_A 9 PWGVPVEVE-SLLVHPGDLLQLRCRL--RDDV-QSINWLRDGVQLVESNRTRIT--GE--EVEVRDSIPADSGLYACVTS 80 (95)
T ss_dssp SCCBTTBBC-CEEECTTSCEEEECCE--ESSC-CEEEEEBTTBCCCCCSSEEEC--SS--EEEESSCCGGGSEEEEEEEE
T ss_pred CCEEEcCcc-eEEEcCCCeEEEEEEC--CCCC-CceEEEECCEecCCCCCEEEe--CC--EEEECCCChHHCEEEEEEec
Confidence 355554433 3678999999999999 6888 899999999999988887764 22 89999999999999999999
Q ss_pred eCCcceEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKV 728 (808)
Q Consensus 715 N~~G~~~~s~~l~V 728 (808)
|..|..+.++.|.|
T Consensus 81 n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 81 SPSGSDTTYFSVNV 94 (95)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred cCCCcEEEEEEEEE
Confidence 99999999999887
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=122.30 Aligned_cols=93 Identities=17% Similarity=0.304 Sum_probs=81.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.. ..+.+|+.+.|.|.+ .| |.+.|.|+|||..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.
T Consensus 8 pp~~~~~~~~-~~v~~G~~v~l~C~~--~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 83 (103)
T 2edf_A 8 PAAIIKPLED-QWVAPGEDVELRCEL--SR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE 83 (103)
T ss_dssp CCCEEECCCC-EEECTTSCEEECCEE--SS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECS
T ss_pred CcEEEecCCc-cEEcCCCCEEEEEEE--eC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEc
Confidence 4666665554 679999999999999 66 8889999999999999999999988888999999999999999999999
Q ss_pred eCCcceEEEEEEEEEeCCCcc
Q psy2145 715 NRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~~~ 735 (808)
| ...++.|.|..+|..+
T Consensus 84 n----~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 84 A----SKSTASLHVEEKASGP 100 (103)
T ss_dssp S----CEEEEEEEECCCSSSS
T ss_pred c----CCcEEEEEEeCCCCCC
Confidence 9 4788999999887643
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=136.65 Aligned_cols=170 Identities=15% Similarity=0.265 Sum_probs=111.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECC--Ee---c--------------CCCCCeEEEeeC--cEEEEEECCCCCCC
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNE--KP---L--------------EDSSRITTKHDF--GYVAMDLSHVRAED 573 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g--~~---l--------------~~~~~~~~~~~~--~~~~L~I~~v~~~D 573 (808)
.+.+|++|+|.|.+.....+...+.|||.. .. + ....|+.+..+. +.++|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D 90 (226)
T 3mlr_H 11 VKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASD 90 (226)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGG
T ss_pred EEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCccc
Confidence 588999999999984212345679999832 11 1 012466665443 56789999999999
Q ss_pred CEEEEEEEEeCCee------EE---EEEEEEEEecccccccccCcccccccccccCCCCCCCCCCccccCCCeEEeecCC
Q psy2145 574 EGIYICKATNALGE------AV---TTASMKIKTKAGLQLETQHPEGLKKIQELEQPASPMPQEPERQYEKPIFTQLLTG 644 (808)
Q Consensus 574 ~G~Y~C~a~N~~G~------~~---~s~~l~V~~~~~i~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~P~~~~~~~~ 644 (808)
+|.|.|.+.+..+. .. ....|.|...+. .+|.+......
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~--------------------------------~~P~i~~~~~~ 138 (226)
T 3mlr_H 91 TGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTT--------------------------------KGPSVFPLAPS 138 (226)
T ss_dssp CEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCC--------------------------------BCCEEEEEEEE
T ss_pred CEEEEEeEccCCCcccccchhhhhCCccEEeeccCCC--------------------------------CCCcEEEecCc
Confidence 99999999875310 11 113455543211 23555432221
Q ss_pred CccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccC-----------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKM-----------GSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~-----------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
..+.+|+.++|.|.+. ...| .+.|.| +|..+.. +..|.+ .+.|.|.....+| |.|+|.
T Consensus 139 -~~~~~g~~~~l~C~~~-~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~ 208 (226)
T 3mlr_H 139 -SKSTSGGTAALGCLVK-DYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICN 208 (226)
T ss_dssp -ECSTTSSEEEEEEEEE-EEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEE-----EEEEEEEGGGTTT-CCCEEE
T ss_pred -ccccCCCCEEEEEEEE-EEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEE-----EEEEEECHhHcCC-CeEEEE
Confidence 2456899999999994 2245 578999 6544322 223333 2479999999889 999999
Q ss_pred EEeCCcceEEEEEE
Q psy2145 713 AINRAGEAVSSTSL 726 (808)
Q Consensus 713 A~N~~G~~~~s~~l 726 (808)
|.|..+.......|
T Consensus 209 v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 209 VNHKPSNTKVDKKV 222 (226)
T ss_dssp EEEGGGTEEEEEEC
T ss_pred EEECCCCcCeEEEc
Confidence 99999887655554
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-15 Score=125.13 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=78.3
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEeCCEEEEEEccCCCCCcEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS----RFHVQHDFGYVTLDITKCVPADSGVYM 710 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 710 (808)
+|.|...+.. ..+.+|+.++|.|.+ .|.| +.|.|||||..+..+. +|.+..+++...|.|.++..+|+|.|+
T Consensus 8 p~~~~~~~~~-~~v~~G~~v~l~C~~--~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 83 (101)
T 2edk_A 8 PVLIVTPLED-QQVFVGDRVEMAVEV--SEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ 83 (101)
T ss_dssp CCCEEECCCC-EEEESSCCCBCCEEE--SCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEE
T ss_pred CCEEEecCCc-eEEcCCCCEEEEEEE--eCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEE
Confidence 4677766554 679999999999999 7888 9999999999998877 778888888889999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEEeCC
Q psy2145 711 CKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 711 C~A~N~~G~~~~s~~l~V~~~p 732 (808)
|.|.| ...++.|.|..+|
T Consensus 84 C~a~n----~~~~~~l~V~~~P 101 (101)
T 2edk_A 84 VITNG----GQCEAELIVEEKQ 101 (101)
T ss_dssp EECSS----CEECCBEEEECCC
T ss_pred EEEcC----CcEEEEEEEeCCC
Confidence 99988 4677889998765
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=120.70 Aligned_cols=89 Identities=27% Similarity=0.463 Sum_probs=79.3
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+|.|...+.....+.+|+.+.|.|.+ +.|.+.|.|+|||..|..+ .++.+..+++..+|.|.++..+|+|.|+|.
T Consensus 14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~---~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 90 (104)
T 1pd6_A 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV 90 (104)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEEC---SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEE
T ss_pred CCCEEEEcCCCcEEEecCCCEEEEEEE---cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEE
Confidence 468898888876789999999999998 6899999999999999988 899998888889999999999999999999
Q ss_pred EEeCCcceEEEEEEEEE
Q psy2145 713 AINRAGEAVSSTSLKVK 729 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~ 729 (808)
| |....++.|.|.
T Consensus 91 a----~~~~~~~~l~V~ 103 (104)
T 1pd6_A 91 V----GGEKCSTELFVK 103 (104)
T ss_dssp E----TTEEECCEEEEE
T ss_pred E----CCCcEEEEEEEe
Confidence 8 556777888886
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=120.34 Aligned_cols=91 Identities=23% Similarity=0.363 Sum_probs=72.3
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCC---eEEEEEECCEEcc---CCCcEEEEEe------CCEEEEEEccCCC
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPT---MRFEWFVNGVELK---MGSRFHVQHD------FGYVTLDITKCVP 703 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~---p~i~W~~~g~~l~---~~~~~~~~~~------~~~~~L~I~~v~~ 703 (808)
|.|...+.. ..+.+|++++|.|.+ .|.|. |.|.|||++.... .+.++.+... .+..+|.|.++..
T Consensus 5 p~f~~~p~~-~~v~~G~~v~L~C~~--~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 81 (108)
T 3cx2_A 5 GLFVMRPQD-GEVTVGGSITFSARV--AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81 (108)
T ss_dssp CSCSBCCCC-EEEETTCCEEEEEEE--ECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred cEEEeCCCc-EEEeCCCCEEEEEEE--CCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC
Confidence 666666543 678999999999999 79998 9999999883222 1345655321 1246899999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+|+|.|+|.|.|.+|..++++.|.|.
T Consensus 82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 82 AFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ccCEEEEEEEecCCCceEEEEEEEEe
Confidence 99999999999999999999999996
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=124.70 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=81.5
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-CCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ..++....++ +|.|.+++.+|+|.|+|.
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~--~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~ 80 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVA--TGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCI 80 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBC--CCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEE
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEE--EecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEE
Confidence 568999999999999999999999999 6889999999999999864 4555554443 799999999999999999
Q ss_pred EEeCceeEEEEEEEEEeeCC
Q psy2145 260 AVNALGQAVTSGNLLVHSKK 279 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~~~ 279 (808)
|.|..|....++.|.|...+
T Consensus 81 a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 81 ASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EECSSCEEEEECCEEEECCS
T ss_pred EEcCCCcEEEEEEEEEEeCC
Confidence 99999999888999997643
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=119.42 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=70.6
Q ss_pred cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC-------cEEEEEECCCCCCCCEEEEEEEEeCCeeEE
Q psy2145 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-------GYVAMDLSHVRAEDEGIYICKATNALGEAV 589 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 589 (808)
..+..+.|.|.+ .|.|.|+|+|+|||++|..+.++...... ...+|.|.++...|+|.|+|+|.|..|...
T Consensus 13 ~~~~~~~l~c~v--~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~ 90 (126)
T 1he7_A 13 VEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90 (126)
T ss_dssp CCCCEEEEEEEE--CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred ccCccEEEEEEE--eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEE
Confidence 467889999999 89999999999999999988776544221 234799999999999999999999999999
Q ss_pred EEEEEEEEecc
Q psy2145 590 TTASMKIKTKA 600 (808)
Q Consensus 590 ~s~~l~V~~~~ 600 (808)
.++.|.|...|
T Consensus 91 ~t~~l~v~~~P 101 (126)
T 1he7_A 91 ASIMAAFMDNP 101 (126)
T ss_dssp EEEEECCCSCT
T ss_pred EEEEEEEEcCC
Confidence 99999888765
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=121.81 Aligned_cols=93 Identities=23% Similarity=0.331 Sum_probs=73.9
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCC---CCeEEEEEECCE-EccC--CCcEEEEEeC------CEEEEEEccCCC
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGD---PTMRFEWFVNGV-ELKM--GSRFHVQHDF------GYVTLDITKCVP 703 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~---P~p~i~W~~~g~-~l~~--~~~~~~~~~~------~~~~L~I~~v~~ 703 (808)
+.|+..+. ...+.+|+.++|.|.+ .|. |.|.|+|||++. .+.. +.++.+.... ...+|.|.++..
T Consensus 13 ~~f~~~P~-~v~V~eG~~v~L~C~v--~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 89 (118)
T 2edn_A 13 GVFLKKPD-SVSVETGKDAVVVAKV--NGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL 89 (118)
T ss_dssp SSCSBCCC-CCEEETTSCEECCEEE--ETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCT
T ss_pred ceEEECCC-CeEEeCCCCEEEEEEE--eccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCCh
Confidence 56666654 3679999999999999 564 899999999752 2222 3455554321 147999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
.|+|.|+|+|+|..|..++++.|.|+.+
T Consensus 90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 90 GDRGYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp TTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred hhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 9999999999999999999999999875
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=125.13 Aligned_cols=159 Identities=10% Similarity=0.112 Sum_probs=107.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe-CCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~-~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.|+++ .|.+|+++.|.|.+.. ..|. .+.|.- .++.+.. ....+...|.|.+++. | |.|.|.+.+....
T Consensus 5 ~P~~~-~V~~G~Sv~l~Cs~~c-~~p~-~~~~~t~l~~~~~~------~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~ 73 (185)
T 1iam_A 5 SPSKV-ILPRGGSVLVTCSTSC-DQPK-LLGIETPLPKKELL------LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ 73 (185)
T ss_dssp ESSEE-EEETTEEEEEEEEECS-SSCS-EEEEECSSCEEEEC------SSSSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred ECCCc-EEeCCCCEEEEEEccC-CCCc-cceEEeeCCCccEe------ccCCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence 45666 7999999999999974 3333 477753 1111110 1123445799999973 4 9999999765455
Q ss_pred eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCC
Q psy2145 134 AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN 213 (808)
Q Consensus 134 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p 213 (808)
....+.|+|+. .|..+.+.+....+.+|+.++|.|.+.+ +.|
T Consensus 74 ~~~~~~l~V~~-------------------------------------~P~~v~i~~~~~~~~~G~~~tL~C~v~g-~~P 115 (185)
T 1iam_A 74 STAKTFLTVYW-------------------------------------TPERVELAPLPSWQPVGKQLTLRCQVEG-GAP 115 (185)
T ss_dssp EEEECEEEEEB-------------------------------------CCSEEEECCCCSEECTTSEEEEEEEEEC-CBC
T ss_pred eEEEEEEEEeC-------------------------------------CCCCCEEccCCccccCCCcEEEEEEcCC-ccC
Confidence 67778888863 3444555666666999999999999963 456
Q ss_pred C--eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 214 T--MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 214 ~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
. +.|.|||+++.+.... ...+....+|.+.....+|...|+|+|.|..+
T Consensus 116 ~~~l~i~w~kg~~~l~~~~---~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 116 RAQLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp GGGEEEEEEETTEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred CCCcEEEEEeCCEEccccc---CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 5 4699999999986432 11223344677665555555599999998665
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=134.37 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=108.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EEee---------ccCcEEEEee--CCeEEEEEcccC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RPVT---------IGHRFRPIHD--FGYVALDIIDTI 116 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~l~---------~~~r~~~~~~--~~~~~L~I~~~~ 116 (808)
...|..+ .+.+|++++|.|.+.+.......+.|||. | ..|. ...|+.+..+ .+.++|.|.+++
T Consensus 5 ~q~p~~v-~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 5 VPEHQTV-PVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EESCSEE-EEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeCCCEE-EEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 3456677 89999999999999842212468999984 2 2221 1367877654 567899999999
Q ss_pred cCCCeeEEEEEEecCc------c--eEEEEEEEEecCCCccccccccccceeeeeeccccccccccccccccCCCCeEEe
Q psy2145 117 PEDSGTYTCRAVNLVG------F--AEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQRGEYIEETTTQAPIFTT 188 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~g------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 188 (808)
.+|+|.|.|.+.+..+ . ....+.|.|..... ...+|.+..
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~--------------------------------~~~~P~v~~ 131 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQ--------------------------------PHTKPSVFV 131 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSC--------------------------------CCBCCEEEE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCC--------------------------------CCcCCcEEE
Confidence 9999999999987631 1 11234666653210 023454443
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCcee
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQ 266 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 266 (808)
.. ..++|.|.+.+ ..|. +.|.|+++ ..+..+........+|.+++. .....+|.|.|+|.|.|..+.
T Consensus 132 ~~--------~~~~L~C~~~g-~~P~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~-~~~~~~~~~~ytC~V~h~~~~ 199 (229)
T 1hxm_A 132 MK--------NGTNVACLVKE-FYPKDIRINLVSS-KKITEFDPAIVISPSGKYNAV-KLGKYEDSNSVTCSVQHDNKT 199 (229)
T ss_dssp EE--------ETTEEEEEEES-CBSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE-EEEEETTTTTCEEEEEETTEE
T ss_pred cC--------CCCeEEEEEEE-EeCCCEEEEEecC-CEEecCccceEECCCCcEEEE-ECcccCCCCcEEEEEEeCCCC
Confidence 22 12489999963 3454 49999999 777644332222344544443 222347889999999997653
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=122.02 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=85.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.|...+.++.+.+|+++.|.|.+ .+.|.+.|.|+|+|..+..+.++.+....+..+|.|.++..+|+|.|+|.|
T Consensus 12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~--~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 89 (106)
T 1nct_A 12 TLAARILTKPRSMTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVV 89 (106)
T ss_dssp SCCCEEEECCCCEEESSSSCEECCEEE--ECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECC
T ss_pred CCCCEEEECCCCEEEeCCCcEEEEEEE--EEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEE
Confidence 568999999999999999999999999 588889999999999998888888877666779999999999999999999
Q ss_pred EeCceeEEEEEEEEEe
Q psy2145 261 VNALGQAVTSGNLLVH 276 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V~ 276 (808)
.|..|....++.|.|.
T Consensus 90 ~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 90 ENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp BCSSCBCCEEEEEEEC
T ss_pred EeCCCeEEEEEEEEEE
Confidence 9999998888888874
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=117.01 Aligned_cols=92 Identities=21% Similarity=0.421 Sum_probs=82.5
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
.+|.|..++.+...+.+|+++.|.|.+ . .|.+.|.|+|||..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~--~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVEL--A-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEE--S-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEe--c-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence 489999998885578899999999999 6 6999999999999999888999888888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEEecc
Q psy2145 582 TNALGEAVTTASMKIKTKA 600 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V~~~~ 600 (808)
|....++.|.|..+|
T Consensus 83 ----g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 83 ----GDEKCSTELFVRSGP 97 (100)
T ss_dssp ----TTEEEEEEEEECCSC
T ss_pred ----CCceEEEEEEEecCC
Confidence 778888999998754
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=120.94 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=71.7
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC----CEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF----GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSL 726 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l 726 (808)
.....|.|.+ .|.|.|.|.|+|||..+..+.++.+.... ...+|.|.++..+|+|.|+|.|.|.+|.+..++.|
T Consensus 20 ~~~~~l~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 97 (118)
T 1wwc_A 20 RLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97 (118)
T ss_dssp CCEEEEEEEE--ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEEe--eeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence 3667899999 79999999999999999988877664422 35689999999999999999999999999999999
Q ss_pred EEEeCCCcc
Q psy2145 727 KVKSKSDIV 735 (808)
Q Consensus 727 ~V~~~p~~~ 735 (808)
.|..+|...
T Consensus 98 ~v~~~P~~v 106 (118)
T 1wwc_A 98 HFLKEPFPV 106 (118)
T ss_dssp CCSCCCCCS
T ss_pred EEccCCCch
Confidence 998887543
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-14 Score=122.11 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=79.3
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.+ ..+.+|+.+.|.|.+ .|.|.+ |.|||||..+..+.++.+..++....|.|.++..+|+|.|+|.|.
T Consensus 8 ~p~~~~~~~~-~~v~~G~~v~l~C~~--~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 83 (106)
T 2dlt_A 8 QLEVLQDIAD-LTVKAAEQAVFKCEV--SDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD 83 (106)
T ss_dssp CCCEEECCCC-EEEESSCCEECCCEE--SCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred CCEEecCCCC-eEEeCCCeEEEEEEE--cCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEc
Confidence 4777776654 689999999999999 788888 999999999999999999988888999999999999999999999
Q ss_pred eCCcceEEEEEEEEEe
Q psy2145 715 NRAGEAVSSTSLKVKS 730 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~ 730 (808)
|. ..+.++.|.|..
T Consensus 84 n~--~~~~~~~l~V~~ 97 (106)
T 2dlt_A 84 GY--ALSLSAKLNFLE 97 (106)
T ss_dssp TS--CCCCCBCEEEEC
T ss_pred cC--CceEEEEEEEEE
Confidence 99 555677777763
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=136.60 Aligned_cols=182 Identities=12% Similarity=0.119 Sum_probs=113.7
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c--------------cCCCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I--------------KSGSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l--------------~~~~~~~~~~~--~~~~~L~I~~~ 248 (808)
+..+.+.+|++|+|.|.+.+.......+.|||. +.. + ....|+.+..+ .+.++|.|.++
T Consensus 30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 109 (256)
T 3sob_H 30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL 109 (256)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence 346779999999999999532233578999983 211 1 01245555432 35678999999
Q ss_pred CCCCcEEEEEEEEeCce-----------eEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCe
Q psy2145 249 LPEDSGVYTCRAVNALG-----------QAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPV 317 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~~g-----------~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~ 317 (808)
+.+|+|.|.|.+.+..| .....+.|.|... ...+|.
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~---------------------------------~~~~P~ 156 (256)
T 3sob_H 110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSA---------------------------------STKGPS 156 (256)
T ss_dssp CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSS---------------------------------CCBCCE
T ss_pred CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecC---------------------------------CCCCCE
Confidence 99999999999987431 1222346666531 123455
Q ss_pred eccCCCceEeecCCeEEEEEEEeecCCC-ccEEEEEECCEeccCCCc---EEEEeeCc---EEEEEEccCCCCCCeEEEE
Q psy2145 318 FTQPMRDIHVAENQAAHFEARLIPVGDS-KLKVTWLRNGVPIQASNR---VSTMHDFG---YVALNFKYTYPEDSGTYTC 390 (808)
Q Consensus 318 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~I~~v~~~d~G~Y~C 390 (808)
+........+.+|+.++|.|.+.. ..| .+.+.| +|..+..... .....++. .+.|.|.....+| |.|+|
T Consensus 157 i~~~~~~~~~~~g~~v~L~C~~~~-~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC 232 (256)
T 3sob_H 157 VFPLAPSSKSTSGGTAALGCLVKD-YFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC 232 (256)
T ss_dssp EEEECCC-----TTEEEEEEEEEE-EBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEE
T ss_pred EEEECCCcccccCCcEEEEEEEEE-EECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEE
Confidence 543233334578999999999842 245 578999 6655432110 01111111 2368899999899 99999
Q ss_pred EEEcCCcceEEEEEEEEE
Q psy2145 391 RAVNELGEAVTSSTLFVE 408 (808)
Q Consensus 391 ~a~n~~g~~~~~~~l~V~ 408 (808)
.|.|..+.......|.+.
T Consensus 233 ~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 233 NVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp EEEEGGGTEEEEEECCCC
T ss_pred EEEeCCCCcceEEEeccc
Confidence 999998777666666554
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=126.69 Aligned_cols=101 Identities=34% Similarity=0.651 Sum_probs=87.2
Q ss_pred CccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee-CcEEEEEECCCCCCCCEEE
Q psy2145 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-FGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 499 ~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y 577 (808)
.+..+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+..+.++.+... .+...|.|.+++.+|+|.|
T Consensus 37 ~v~~~P~~~~~~~~~-~v~~G~~v~L~C~~--~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 113 (154)
T 1fhg_A 37 KPHVKPYFTKTILDM-EVVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 113 (154)
T ss_dssp CCCEEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEE
T ss_pred cCCCCCeEEccCCcE-EEeCCCeEEEEEEE--EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEE
Confidence 345689999888876 68999999999999 7999999999999999998888877643 4556899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEEecccc
Q psy2145 578 ICKATNALGEAVTTASMKIKTKAGL 602 (808)
Q Consensus 578 ~C~a~N~~G~~~~s~~l~V~~~~~i 602 (808)
+|.|.|..|....++.|.|...+.+
T Consensus 114 ~C~a~N~~G~~~~~~~l~V~~~p~~ 138 (154)
T 1fhg_A 114 TCKAVNSLGEATCTAELLVETMGKE 138 (154)
T ss_dssp EEEEEETTEEEEEEEEEEEECC---
T ss_pred EEEEEECCCeEEEEEEEEEeCcCcC
Confidence 9999999999999999999987654
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=123.38 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=68.6
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
...+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.++. +....+..+|.|.++..+|+|.|+|.|.|..|....+
T Consensus 17 ~~~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~ 94 (100)
T 3caf_A 17 LHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 94 (100)
T ss_dssp EEEECTTCCEEEECCE--EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEecCCCEEEEEEEc--cccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEE
Confidence 3468899999999999 799999999999999998654421 1222233489999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 724 TSLKV 728 (808)
Q Consensus 724 ~~l~V 728 (808)
+.|.|
T Consensus 95 ~~l~V 99 (100)
T 3caf_A 95 YHLDV 99 (100)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99887
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=139.61 Aligned_cols=185 Identities=14% Similarity=0.207 Sum_probs=116.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee--------------ccCcEEEEeeC--CeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT--------------IGHRFRPIHDF--GYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~--------------~~~r~~~~~~~--~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+.+.......+.|||. +. .+. ...|+.+..+. +.++|.
T Consensus 27 v~q~~~~-~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 105 (267)
T 3u1s_H 27 LVQSGAE-VKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYME 105 (267)
T ss_dssp EEECCCE-EECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEE
T ss_pred EEeeCCE-EEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEE
Confidence 3445566 79999999999999742234568999983 21 110 12577765443 567899
Q ss_pred EcccCcCCCeeEEEEEEec------Cc------------c-------eEEEEEEEEecCCCccccccccccceeeeeecc
Q psy2145 112 IIDTIPEDSGTYTCRAVNL------VG------------F-------AEVQATLQCRGSAGILTSTQNETGLEQIQYLED 166 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~------~g------------~-------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 166 (808)
|.+++.+|+|.|.|.+.+. .+ . ....+.|.|...
T Consensus 106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~--------------------- 164 (267)
T 3u1s_H 106 LRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSA--------------------- 164 (267)
T ss_dssp ECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCC---------------------
T ss_pred ECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCC---------------------
Confidence 9999999999999999631 01 0 011234444321
Q ss_pred ccccccccccccccCCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCce----
Q psy2145 167 KSKYQRGEYIEETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFGF---- 240 (808)
Q Consensus 167 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~~---- 240 (808)
...+|.+........+.+|+.++|.|.+.+...+.+.+.| ||..+..+... .....++.
T Consensus 165 -------------~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~ 229 (267)
T 3u1s_H 165 -------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLS 229 (267)
T ss_dssp -------------CCBCCEEEEECCCGGGEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEE
T ss_pred -------------CCCCCEEEEecCCcccCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEE
Confidence 1346666643434344689999999999642222678999 66555322110 01112221
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEE
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 275 (808)
..|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 230 s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 230 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 258898888888 9999999998765555444443
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=122.23 Aligned_cols=95 Identities=23% Similarity=0.382 Sum_probs=81.6
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC-CCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED-SSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
..+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|||..+.. ..++....+ + +|.|.+++.+|+|.|+|
T Consensus 6 ~~pP~i~~~p~~~-~v~~G~~v~l~C~~--~g~p~p~i~W~k~g~~~~~~~~~~~~~~~-~--~L~i~~v~~~D~G~Y~C 79 (118)
T 2eo9_A 6 SGPPVIRQGPVNQ-TVAVDGTFVLSCVA--TGSPVPTILWRKDGVLVSTQDSRIKQLEN-G--VLQIRYAKLGDTGRYTC 79 (118)
T ss_dssp CCSCCCSBCCCCE-EEETTCEEEEECBC--CCSSCCEEEEEESSSBCCTTSTTEEEEET-T--EEEEESCCGGGCCCEEE
T ss_pred CCCCEEEcCCCCE-EEcCCCeEEEEEEE--EecCCCEEEEEECCEECcCCCCeEEEccC-C--EEEEccCCcCCCEEEEE
Confidence 4578888877776 68999999999999 8999999999999999875 456655443 4 79999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEeccc
Q psy2145 580 KATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
.|.|..|....++.|.|...+.
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~~~ 101 (118)
T 2eo9_A 80 IASTPSGEATWSAYIEVQEFGV 101 (118)
T ss_dssp EEECSSCEEEEECCEEEECCSC
T ss_pred EEEcCCCcEEEEEEEEEEeCCC
Confidence 9999999999999999987653
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-14 Score=119.51 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=81.6
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCC-cEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT-LKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
..+|.|..++.+. .+.+|+.++|.|.+ .+.|. +.+.|+|||..|..+.++.+..++...+|.|.++..+|+|.|+|
T Consensus 6 ~~p~~~~~~~~~~-~v~~G~~v~l~C~v--~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (104)
T 2eny_A 6 SGHVGITKRLKTM-EVLEGESCSFECVL--SHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82 (104)
T ss_dssp CCCCCCSBCCCCE-EEESSCCEEEEEEC--SSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEE
T ss_pred cCCCEEEecCCCc-EEcCCCcEEEEEEE--cCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEE
Confidence 4567888888887 68999999999999 67774 48999999999999899998888888899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEeccc
Q psy2145 580 KATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
.|.| ...++.|.|..+|.
T Consensus 83 ~a~~----~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 83 SVRG----LTSKASLIVRERSG 100 (104)
T ss_dssp EETT----EEEEECEEEECCCS
T ss_pred EECC----eeEEEEEEEeCCCc
Confidence 9854 56889999987653
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-14 Score=121.80 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=75.6
Q ss_pred cceeecCCCCccccCCCCcEEEEEEEeeC-CCCCceEEEEeCCEE-ee--ccCcEEEEee--C----CeEEEEEcccCcC
Q psy2145 49 IYYTVTKPKSIENLRERGHAHFECKLEPV-TDSNLKVEWFKNGRP-VT--IGHRFRPIHD--F----GYVALDIIDTIPE 118 (808)
Q Consensus 49 ~~~~~~~p~~~~~v~~G~~v~l~C~~~~~-~~p~~~v~W~~~g~~-l~--~~~r~~~~~~--~----~~~~L~I~~~~~~ 118 (808)
.+.++..|.++ .+.+|++++|.|.+.+. +.|.+.|+|||++.. +. .+.++.+... . ..++|.|.+++.+
T Consensus 7 ~~~F~~~P~~v-~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 85 (126)
T 2dav_A 7 GILFIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85 (126)
T ss_dssp SCSCCSCCCCC-EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred ccEEEEcCCCe-EEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence 35677889998 99999999999999842 238899999997521 11 2456655322 1 2468999999999
Q ss_pred CCeeEEEEEEecCcceEEEEEEEEec
Q psy2145 119 DSGTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
|+|.|+|.|.|..|..+.++.|+|..
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999999999999986
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=117.40 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=79.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccC-CCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS-GSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+....+.+|++++|.|.+ .+.|.+.+.|+|+|..+.. ..++....+ + +|.|.+++.+|+|.|+|.
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-~--~L~i~~v~~~d~G~Y~C~ 80 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKA--TGDPLPVISWLKEGFTFPGRDPRATIQEQ-G--TLQIKNLRISDTGTYTCV 80 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEE--ECSSCCEEEEEESSSEESSSCSSCEECTT-C--CEEEESCCTTTCCEEEEE
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEE--EEcCCCEEEEEECCEECCCCCCCEEEcCC-C--EEEEccCCcccCEEEEEE
Confidence 568999999999999999999999999 5889999999999999873 445544333 3 799999999999999999
Q ss_pred EEeCceeEEEEEEEEEee
Q psy2145 260 AVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V~~ 277 (808)
|.|..|....++.|.|..
T Consensus 81 a~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVTE 98 (100)
T ss_dssp EECSSCCCBCCEEEEEES
T ss_pred EEcCCCCEEEEEEEEEec
Confidence 999999998899999875
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=117.43 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=80.8
Q ss_pred CCeEEeecCCC--ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 635 KPIFTQLLTGT--SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 635 ~P~~~~~~~~~--~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+|.+...+... ..+.+|+.+.|.|.+ +.|.+.|.|+|||+.+..+.++.+..++...+|.|.++..+|+|.|+|.
T Consensus 10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~---~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (113)
T 2cpc_A 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL---CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86 (113)
T ss_dssp CSCSEEESCSCEEEEEETTCCEEEEEEE---SCTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred CCcEEEccCCceeEEEEcCCeEEEEEEe---cCCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEE
Confidence 45555544332 357899999999999 3899999999999999999999998888788999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 713 AINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
|.| .+.++.|.|..+|.++..
T Consensus 87 a~n----~~~~~~l~V~~~p~~~~~ 107 (113)
T 2cpc_A 87 IDD----ESASFTVTVTEPPVRIIY 107 (113)
T ss_dssp SSS----CEEEEEEEEECCCCCCCC
T ss_pred Eec----CcEEEEEEEecCCchhcc
Confidence 999 577899999998866543
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=115.63 Aligned_cols=86 Identities=21% Similarity=0.389 Sum_probs=76.2
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+. ...+.+|+.+.|.|.+ +.|.+.|.|||||..|..+.++.+..++...+|.|.++..+|+|.|+|.|
T Consensus 9 ~~~~~~~~-~~~v~~G~~v~l~C~~---~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-- 82 (95)
T 2k1m_A 9 SAFSKKPR-SVEVAAGSPAVFEAET---ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA-- 82 (95)
T ss_dssp CCCSBCCC-CEEEETTSCEEEEEEC---SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE--
T ss_pred CeeEeCCC-cEEEeCCCcEEEEEEe---CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE--
Confidence 55555544 3578999999999998 78999999999999999999999998888899999999999999999998
Q ss_pred CCcceEEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKVK 729 (808)
Q Consensus 716 ~~G~~~~s~~l~V~ 729 (808)
|....++.|.|.
T Consensus 83 --g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 --GSSKVKFDLKVI 94 (95)
T ss_dssp --TTEEEEEEEEEE
T ss_pred --CCceEEEEEEEe
Confidence 778888999886
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=117.41 Aligned_cols=93 Identities=27% Similarity=0.562 Sum_probs=79.2
Q ss_pred CccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 499 ~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
....+|.|...+.+. .+.+|+.+.|.|.+ .|.|.|.+.|+|+|..+...... ...+...|.|.++..+|+|.|+
T Consensus 7 ~~~~~P~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~ 80 (99)
T 2yr3_A 7 GMEVAPSFSSVLKDC-AVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYT 80 (99)
T ss_dssp CCCEEEEEEECCCCE-EECTTCCEEEECEE--EEESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEE
T ss_pred CcccCCceeecCCCC-EEeCCCeEEEEEEE--eeeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEE
Confidence 345688998888776 68999999999999 78999999999999998765542 2344568999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEE
Q psy2145 579 CKATNALGEAVTTASMKIK 597 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~ 597 (808)
|.|.|..|....++.|.|+
T Consensus 81 C~a~N~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 81 CLAENALGQVSCSAWVTVH 99 (99)
T ss_dssp EEEECSSCEEEEECCEEEC
T ss_pred EEEEECCCeEEEEEEEEEC
Confidence 9999999999988888773
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=120.31 Aligned_cols=96 Identities=30% Similarity=0.545 Sum_probs=72.7
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....++......+ .|.|.+++.+|+|.|+|.
T Consensus 8 ~~~P~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~ 82 (108)
T 3kvq_A 8 RVAPTITGNLENQ-TTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQ 82 (108)
T ss_dssp ---CCCBSCCCCE-EEETTCCEEEECBC--C----CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEEEEE
T ss_pred cCCCceecCCCCe-EEeCCCeEEEEEEC--cCcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEEEEE
Confidence 4578888877776 68999999999999 899999999999999998877776654444 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEeccc
Q psy2145 581 ATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~~~ 601 (808)
|.|..|....++.|.|...+.
T Consensus 83 a~n~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 83 ACSVLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp EC----CEEEEEEEEEEC---
T ss_pred EEeCCCceEEEEEEEEeCCCc
Confidence 999999999999999987643
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=116.54 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=78.4
Q ss_pred CCCe-eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC--CeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 502 QRPV-FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 502 ~~P~-f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
++|. |...+.+. .+.+|+.+.|.|.+ .+ |.+.|.|+|||..+..+. ++.+..++....|.|.+++.+|+|.|+
T Consensus 5 ~~p~~~~~~~~~~-~v~~G~~v~l~C~~--~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 80 (103)
T 1x44_A 5 SSGIMVTKQLEDT-TAYCGERVELECEV--SE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80 (103)
T ss_dssp CSSCCCSBCCCCE-EEETTEEEEEEEEC--SS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEE
T ss_pred CCCceeeccCCCE-EEECCCCEEEEEEe--cC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEE
Confidence 3454 77777776 68999999999998 66 779999999999998887 678888887789999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEeccc
Q psy2145 579 CKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
|.|.| ...++.|.|...|.
T Consensus 81 C~a~n----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 81 VMTTG----GQSSAKLSVDLKSG 99 (103)
T ss_dssp EEETT----EEEEEEEEEECCCS
T ss_pred EEECC----CcEEEEEEEeCCCC
Confidence 99988 57778888887543
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=114.08 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=77.1
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..||.|...+....+.+|+++.|.|.+. +.| +.|.|+|+|..+..+.++.+.. + .|.|.+++.+|+|.|+|.|
T Consensus 7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~--g~p-p~i~W~k~g~~~~~~~~~~~~~--~--~L~i~~~~~~D~G~Y~C~a 79 (95)
T 2ckn_A 7 AQPWGVPVEVESLLVHPGDLLQLRCRLR--DDV-QSINWLRDGVQLVESNRTRITG--E--EVEVRDSIPADSGLYACVT 79 (95)
T ss_dssp SCSCCBTTBBCCEEECTTSCEEEECCEE--SSC-CEEEEEBTTBCCCCCSSEEECS--S--EEEESSCCGGGSEEEEEEE
T ss_pred CCCCEEEcCcceEEEcCCCeEEEEEECC--CCC-CceEEEECCEecCCCCCEEEeC--C--EEEECCCChHHCEEEEEEe
Confidence 4678888889999999999999999994 666 6999999999998877776542 2 8999999999999999999
Q ss_pred EeCceeEEEEEEEEE
Q psy2145 261 VNALGQAVTSGNLLV 275 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V 275 (808)
.|..|....++.|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999999888888876
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=114.92 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=69.6
Q ss_pred cCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE--eeC---cEEEEEECCCCCCCCEEEEEEEEeCCeeEEEE
Q psy2145 517 EEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK--HDF---GYVAMDLSHVRAEDEGIYICKATNALGEAVTT 591 (808)
Q Consensus 517 ~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~--~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 591 (808)
..|+.+.|.|.+ .|.|.|.|+|+|||+.|..+.++... ..+ ...+|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 14 ~~~~~~~~~c~v--~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 91 (103)
T 1wwb_X 14 TSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91 (103)
T ss_dssp CCCCEEEEEEEE--ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred eECcEEEEEEEE--EEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence 468899999999 89999999999999999887664222 111 12359999999999999999999999999999
Q ss_pred EEEEEEeccc
Q psy2145 592 ASMKIKTKAG 601 (808)
Q Consensus 592 ~~l~V~~~~~ 601 (808)
+.|.|...|.
T Consensus 92 ~~l~V~~~P~ 101 (103)
T 1wwb_X 92 ISAHFMGWPG 101 (103)
T ss_dssp EEECCSCCCC
T ss_pred EEEEECCCCC
Confidence 9999987654
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-14 Score=125.71 Aligned_cols=97 Identities=24% Similarity=0.370 Sum_probs=81.1
Q ss_pred ccCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEccC--CCcEEEE--EeCC--EEEEEEccCCCC
Q psy2145 632 QYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVELKM--GSRFHVQ--HDFG--YVTLDITKCVPA 704 (808)
Q Consensus 632 ~~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l~~--~~~~~~~--~~~~--~~~L~I~~v~~~ 704 (808)
...+|.|.. + ....+.+|+.+.|.|.+ .|.|.|. |.|+++|..|.. ..++.+. ...+ .++|.|.++..+
T Consensus 11 V~~~P~i~~-~-~~~~~~~G~~v~l~C~~--~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 86 (122)
T 2cry_A 11 VNGPPIISS-T-QTQHALHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA 86 (122)
T ss_dssp CCSSCCEEE-E-CCCCCCTTSCCCCCEEE--CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred EecCCCccC-C-CeEEEecCCCEEEEEEE--eecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChh
Confidence 335677776 3 44679999999999999 8999986 999999999986 4677763 2233 679999999999
Q ss_pred Cc-EEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 705 DS-GVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 705 D~-G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
|+ |.|+|.|.|.+|.+..++.|.|..++
T Consensus 87 D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 115 (122)
T 2cry_A 87 DFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115 (122)
T ss_dssp HHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred hCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence 99 99999999999999999999997654
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-14 Score=122.98 Aligned_cols=95 Identities=24% Similarity=0.419 Sum_probs=81.4
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE-EeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ-HDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+.|...+. ...+.+|+.++|.|.+ .|.|.|.|.|||||..|..+.++.+. .+++.++|.|.++..+|+|.|+|.
T Consensus 14 ~~~~~~~~-~~~v~~G~~v~l~C~~--~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 88 (115)
T 2cr6_A 14 VHIIEDLE-DVDVQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE-- 88 (115)
T ss_dssp CEEEECCC-EEEEETTSCEECCCEE--ESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE--
T ss_pred CeEeccCc-cEEEeCCCcEEEEEEE--cCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE--
Confidence 35555554 4679999999999999 79999999999999999988888776 346677899999999999999999
Q ss_pred eCCcceEEEEEEEEEeCCCcccc
Q psy2145 715 NRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
+|....++.|.|..+|.++..
T Consensus 89 --~g~~~~~~~L~V~~~p~~~~~ 109 (115)
T 2cr6_A 89 --AGDQRASAALRVTEKPSVFSR 109 (115)
T ss_dssp --ETTEECCEEEEEECCSSCCSS
T ss_pred --ECCeeEEEEEEEECCCceecc
Confidence 688899999999999887544
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=114.99 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=78.7
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC----------ceEEEecCceEEEEEccCCC
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----------RFTETNNFGFVALDIMQCLP 250 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~----------~~~~~~~~~~~~L~I~~~~~ 250 (808)
..+|.|...+.+..+.+|++++|.|.+. + .+.+.|||||++|..+. ++.+..++..++|.|.+++.
T Consensus 6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs--~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~ 81 (112)
T 2e6q_A 6 SGTARLVAGLEDVQVYDGEDAVFSLDLS--T--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH 81 (112)
T ss_dssp CSCCCEEECCCCEEEETTCEEEEEEEES--S--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCS
T ss_pred cCCcEEecCCCCeEEcCCCcEEEEEEEC--C--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCH
Confidence 3468899999999999999999999993 4 66899999999999887 88888888888999999999
Q ss_pred CCcEEEEEEEEeCceeEEEEEEEEEeeCC
Q psy2145 251 EDSGVYTCRAVNALGQAVTSGNLLVHSKK 279 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 279 (808)
+|+|.|+|...+ ...+++.|.|..+|
T Consensus 82 ~D~G~Y~~~~~~---~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 82 QDSGALVGFSCP---GVQDSAALTIQESS 107 (112)
T ss_dssp TTCSEEEEEEET---TEEEEEEEEEECSS
T ss_pred HHCccEEEEEEC---CeeEEEEEEEeCCC
Confidence 999999774433 45678999998754
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=116.37 Aligned_cols=93 Identities=22% Similarity=0.427 Sum_probs=81.7
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..||.|..++.+. .+.+|+.+.|.|.+ .+ |.+.|.|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|.
T Consensus 6 ~~pp~~~~~~~~~-~v~~G~~v~l~C~~--~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2edf_A 6 SGPAAIIKPLEDQ-WVAPGEDVELRCEL--SR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81 (103)
T ss_dssp CCCCCEEECCCCE-EECTTSCEEECCEE--SS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEE
T ss_pred CCCcEEEecCCcc-EEcCCCCEEEEEEE--eC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEE
Confidence 4578888888886 68999999999999 66 88899999999999988899888888888999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEeccc
Q psy2145 581 ATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~~~~ 601 (808)
|.| ...++.|.|...|.
T Consensus 82 a~n----~~~~~~l~V~~~p~ 98 (103)
T 2edf_A 82 VEA----SKSTASLHVEEKAS 98 (103)
T ss_dssp CSS----CEEEEEEEECCCSS
T ss_pred Ecc----CCcEEEEEEeCCCC
Confidence 999 36778888887553
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-14 Score=120.71 Aligned_cols=98 Identities=28% Similarity=0.497 Sum_probs=84.2
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-eeCcEEEEEECCCCCCCCEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-HDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
..+|.|...+.+. .+.+|+.+.|.|.+ .|.|.+.|.|+|+|..+....+.... ...+..+|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~~~~~-~v~~G~~v~l~C~~--~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 7 GFRPHFLQAPGDL-TVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCCCEEEECCCEE-EEESSSCBCCEEEE--ECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCE
T ss_pred CCCCcEEeCCCcE-EEeCCCEEEEEEEE--EEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEE
Confidence 4588999888776 68999999999999 79999999999999999876654433 34455689999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEeccc
Q psy2145 580 KATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
.|.|..|..+.++.|.|...+.
T Consensus 84 ~a~n~~g~~~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAAKES 105 (110)
T ss_dssp EEECSSCEEEECCEEEEECCCC
T ss_pred EEECCCCEEEEEEEEEEeCCCC
Confidence 9999999999999999987653
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=120.40 Aligned_cols=161 Identities=12% Similarity=0.090 Sum_probs=106.3
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
+.+.|++..|.+|+++.|.|.+. ...+..+.|.- ++..+. ....+...|.|.+++. | |.|.|.+.+.
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~--c~~p~~~~~~t~l~~~~~~-------~~~~~~~~l~l~~vs~-~-g~y~C~~~c~ 70 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTS--CDQPKLLGIETPLPKKELL-------LPGNNRKVYELSNVQE-D-SQPMCYSNCP 70 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEEC--SSSCSEEEEECSSCEEEEC-------SSSSSEEEEEEEEECS-C-BCCEEEEECS
T ss_pred eEEECCCcEEeCCCCEEEEEEcc--CCCCccceEEeeCCCccEe-------ccCCceeEEEEEecCc-C-CEEEEEEECC
Confidence 34566778899999999999993 33333467753 111110 1112334689999973 4 9999999776
Q ss_pred ceeEEEEEEEEEeeCCcccccccccchhhhhhhhhccccccccccccccCCCCeeccCCCceEeecCCeEEEEEEEeecC
Q psy2145 264 LGQAVTSGNLLVHSKKSIQTETQHGESLSRLQQLEQGRYQRTSIIEDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVG 343 (808)
Q Consensus 264 ~g~~~~~~~l~V~~~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~~~l~C~~~~~g 343 (808)
.......+.|+|..+| ......+....+.+|+.++|.|.+. .+
T Consensus 71 ~~~~~~~~~l~V~~~P------------------------------------~~v~i~~~~~~~~~G~~~tL~C~v~-g~ 113 (185)
T 1iam_A 71 DGQSTAKTFLTVYWTP------------------------------------ERVELAPLPSWQPVGKQLTLRCQVE-GG 113 (185)
T ss_dssp SCEEEEECEEEEEBCC------------------------------------SEEEECCCCSEECTTSEEEEEEEEE-CC
T ss_pred CCceEEEEEEEEeCCC------------------------------------CCCEEccCCccccCCCcEEEEEEcC-Cc
Confidence 4556677888887543 2222333344588999999999994 44
Q ss_pred CCc--cEEEEEECCEeccCCCcEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcCCc
Q psy2145 344 DSK--LKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELG 397 (808)
Q Consensus 344 ~p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~g 397 (808)
.|. +.|+|||+++.+.... ...+....+|.+.....+|.+.|+|+|.|..+
T Consensus 114 ~P~~~l~i~w~kg~~~l~~~~---~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 114 APRAQLTVVLLRGEKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp BCGGGEEEEEEETTEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred cCCCCcEEEEEeCCEEccccc---CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 666 4699999999886421 11122334677776655556699999999876
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=116.99 Aligned_cols=93 Identities=25% Similarity=0.380 Sum_probs=81.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+. ...+.+|+.+.|.|.+ |.|.+.|.|+|||..|..+.++.+..+++.+.|.|.++..+|+|.|+|.
T Consensus 8 pp~~~~~~~-~~~v~~G~~v~l~C~~---~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 81 (103)
T 2dku_A 8 ANCFTEELT-NLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD-- 81 (103)
T ss_dssp CCCCSSCCC-CEEEETTSEEEEEEEC---SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE--
T ss_pred CCEeEecCC-cEEEeCCCcEEEEEEe---CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE--
Confidence 356655554 3678999999999985 8899999999999999999999998888899999999999999999998
Q ss_pred eCCcceEEEEEEEEEeCCCcc
Q psy2145 715 NRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~~~ 735 (808)
+|....++.|.|..+|..+
T Consensus 82 --~g~~~~~~~l~V~~~p~~p 100 (103)
T 2dku_A 82 --IGQAQSRAQLLVQGRRSGP 100 (103)
T ss_dssp --CSSCBCCEEEEEECSCCCC
T ss_pred --eCCceEEEEEEEeCccCCC
Confidence 8888999999999887543
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-14 Score=119.09 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=78.5
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC----CeEEEeeCcEEEEEECCCCCCCCEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS----RITTKHDFGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~ 576 (808)
..||.|..++.+. .+.+|+.+.|.|.+ .+.| +.+.|+|||..+..+. ++.+..+++...|.|.++..+|+|.
T Consensus 6 ~~p~~~~~~~~~~-~v~~G~~v~l~C~~--~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 81 (101)
T 2edk_A 6 SGPVLIVTPLEDQ-QVFVGDRVEMAVEV--SEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81 (101)
T ss_dssp CCCCCEEECCCCE-EEESSCCCBCCEEE--SCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSB
T ss_pred cCCCEEEecCCce-EEcCCCCEEEEEEE--eCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEE
Confidence 4578898888886 78999999999999 7888 9999999999998776 6688888888899999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEEec
Q psy2145 577 YICKATNALGEAVTTASMKIKTK 599 (808)
Q Consensus 577 Y~C~a~N~~G~~~~s~~l~V~~~ 599 (808)
|+|.|.| ...++.|.|..+
T Consensus 82 Y~C~a~n----~~~~~~l~V~~~ 100 (101)
T 2edk_A 82 YQVITNG----GQCEAELIVEEK 100 (101)
T ss_dssp EEEECSS----CEECCBEEEECC
T ss_pred EEEEEcC----CcEEEEEEEeCC
Confidence 9999988 345677888754
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=118.00 Aligned_cols=93 Identities=23% Similarity=0.424 Sum_probs=81.6
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.. ..+.+|+++.|.|.+ .|.|.+ |.|+|||..+..+.++.+..++..++|.|.++..+|+|.|+|.
T Consensus 8 pp~~~~~~~~-~~v~~G~~v~l~C~~--~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~-- 81 (103)
T 2e7b_A 8 PVRFQEALKD-LEVLEGGAATLRCVL--SSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS-- 81 (103)
T ss_dssp CCCCTBCCCC-EEEESSSCEEEEEEC--SSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE--
T ss_pred CCEEEecCcc-EEEECCCcEEEEEEE--eCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE--
Confidence 4666555443 678999999999999 799999 9999999999989999999888889999999999999999998
Q ss_pred eCCcceEEEEEEEEEeCCCcc
Q psy2145 715 NRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p~~~ 735 (808)
+|....++.|.|..+|..+
T Consensus 82 --~g~~~~~~~l~V~~~p~~~ 100 (103)
T 2e7b_A 82 --FGDQTTSATLTVTALPSGP 100 (103)
T ss_dssp --CSSCBCCBCEEEECCCCCS
T ss_pred --ECCcEEEEEEEEEeccccc
Confidence 7888889999999887543
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=134.07 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=112.7
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCC------------CCCceEEEEe--CCE--Ee-e--ccC----------cEE
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVT------------DSNLKVEWFK--NGR--PV-T--IGH----------RFR 100 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~------------~p~~~v~W~~--~g~--~l-~--~~~----------r~~ 100 (808)
..++..+..+ .+.+|++++|.|...... .....|.||+ .|+ .+ . .+. +..
T Consensus 159 f~V~tq~~sv-~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~ 237 (401)
T 3f8u_B 159 LTVLTHTPAP-RVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVA 237 (401)
T ss_dssp EEEEESCSSC-EEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEE
T ss_pred EEEeCCCCcE-EEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEE
Confidence 4455667777 999999999999997421 0146799997 232 11 1 111 111
Q ss_pred EE---------eeCCeEEEEEcccCcCCCeeEEEEEEecCcceEEEEEEEEecCCCccccccccccceeeeeeccccccc
Q psy2145 101 PI---------HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGILTSTQNETGLEQIQYLEDKSKYQ 171 (808)
Q Consensus 101 ~~---------~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (808)
.. ...++.+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 238 f~~~~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~---------------------------- 289 (401)
T 3f8u_B 238 FAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY---------------------------- 289 (401)
T ss_dssp EEEESCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE----------------------------
T ss_pred EEeecccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeec----------------------------
Confidence 11 12356799999999999999999999988877777777774
Q ss_pred cccccccccCCCCeEEeecCcee-ecCCC-eEEEEEEEeecCCCC--eEEEEe-eCC---EEccCCCc----eEEEecCc
Q psy2145 172 RGEYIEETTTQAPIFTTSLKNCE-IKEGQ-RAHFECRLIPVSDNT--MKVEWF-HNN---VPIKSGSR----FTETNNFG 239 (808)
Q Consensus 172 ~~~~~~~~~~~~P~~~~~~~~~~-v~~G~-~v~L~C~~~~~~~p~--~~v~W~-~~g---~~l~~~~~----~~~~~~~~ 239 (808)
.+|.+...+.... +..|+ .++|.|.+.+ ..|. +.|+|+ +|+ ..+..... ......+|
T Consensus 290 ----------~pP~V~v~p~~~~~~~~G~~~vtL~C~a~G-fyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DG 358 (401)
T 3f8u_B 290 ----------KPPKVSLMPATLARAAPGEAPPELLCLVSH-FYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDG 358 (401)
T ss_dssp ----------BCCEEEEESSSCCCCCTTCCCCCEEEEEEE-EBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTS
T ss_pred ----------cCCeEeeccCcceeecCCCccEEEEEEecC-CcCCCCcEEEEEecCCCCCceecccccccccccccCCCc
Confidence 3566766665544 46787 8999999964 3454 799995 875 22221110 01112223
Q ss_pred e----EEEEEccCCCCCc-EEEEEEEEeCc
Q psy2145 240 F----VALDIMQCLPEDS-GVYTCRAVNAL 264 (808)
Q Consensus 240 ~----~~L~I~~~~~~D~-G~Y~C~a~n~~ 264 (808)
. .+|.|...+.+|. +.|+|++.|..
T Consensus 359 TysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 359 SVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp CEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred eEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 2 2466655543344 59999999964
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=113.01 Aligned_cols=94 Identities=27% Similarity=0.477 Sum_probs=81.7
Q ss_pred CccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 499 ATKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 499 ~~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
+...||.|...+.+. .+.+|+++.|.|.+ .+. |.+.|+|||..|..+.++.+..+++...|.|.++..+|+|.|+
T Consensus 15 V~~~pp~~~~~~~~~-~v~~G~~v~l~C~~--~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (113)
T 2edh_A 15 VRALPIKFTEGLRNE-EATEGATAVLRCEL--SKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYL 89 (113)
T ss_dssp CCCSCCCEEECCCCC-EECTTSCEEEEEEE--SSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEE
T ss_pred EEcCCCcccccCCce-EEeCCCeEEEEEEE--CCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEE
Confidence 334567898888877 79999999999999 565 6799999999999889999988888889999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEEeccc
Q psy2145 579 CKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
|.| |....++.|.|...|.
T Consensus 90 C~a----~~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 90 CMC----GKERTSAMLTVRAMPS 108 (113)
T ss_dssp EEE----TTEEEEEEEEECCCCC
T ss_pred EEe----CCCCEEEEEEEeCCCC
Confidence 999 7788889999987653
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=115.53 Aligned_cols=81 Identities=25% Similarity=0.469 Sum_probs=71.5
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+.++|.|.+ .|.| |.|.|+|+|..+..+.++.+. + ..|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 13 ~~v~~G~~v~L~C~~--~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 85 (99)
T 2cr3_A 13 FLVHPGDLLQLRCRL--RDDV-QSINWLRDGVQLAESNRTRIT--G--EEVEVQDSVPADSGLYACVTSSPSGSDTTYFS 85 (99)
T ss_dssp CCBCTTSCEEEECCC--CSSC-CEEEEEESSSBCCCCSSEEEC--S--SEEEETTCCTTTCEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEe--cCCC-CeEEEEECCEECCCCCcEEEE--C--CEEEEccCCHHHCEEEEEEEEeCCceEEEEEE
Confidence 467899999999998 7887 799999999999888787765 2 38999999999999999999999999999999
Q ss_pred EEEEeCCC
Q psy2145 726 LKVKSKSD 733 (808)
Q Consensus 726 l~V~~~p~ 733 (808)
|.|...+.
T Consensus 86 l~V~~~~~ 93 (99)
T 2cr3_A 86 VNVSDALP 93 (99)
T ss_dssp ECBCSCCS
T ss_pred EEEecCCC
Confidence 99987654
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=117.05 Aligned_cols=92 Identities=21% Similarity=0.363 Sum_probs=80.9
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
..+|.|..++.+. .+.+|+.+.|.|.+ .+.|.+ +.|+|||..+..+.++.+..++....|.|.++..+|+|.|+|.
T Consensus 6 ~~~p~~~~~~~~~-~v~~G~~v~l~C~~--~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (106)
T 2dlt_A 6 SGQLEVLQDIADL-TVKAAEQAVFKCEV--SDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFV 81 (106)
T ss_dssp CCCCCEEECCCCE-EEESSCCEECCCEE--SCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEE
T ss_pred CCCCEEecCCCCe-EEeCCCeEEEEEEE--cCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEE
Confidence 4578999988887 68999999999999 788887 9999999999988899888888888999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEe
Q psy2145 581 ATNALGEAVTTASMKIKT 598 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~ 598 (808)
|.|. ....++.|.|..
T Consensus 82 a~n~--~~~~~~~l~V~~ 97 (106)
T 2dlt_A 82 PDGY--ALSLSAKLNFLE 97 (106)
T ss_dssp EETS--CCCCCBCEEEEC
T ss_pred EccC--CceEEEEEEEEE
Confidence 9998 555667777764
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=111.44 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=77.5
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKA 581 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 581 (808)
..|.|..++.+. .+.+|+.+.|.|.+ +.|.+.|.|+|||..+..+.++.+..++...+|.|.+++.+|+|.|+|.|
T Consensus 7 ~~~~~~~~~~~~-~v~~G~~v~l~C~~---~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 7 PVSAFSKKPRSV-EVAAGSPAVFEAET---ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp CCCCCSBCCCCE-EEETTSCEEEEEEC---SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred CCCeeEeCCCcE-EEeCCCcEEEEEEe---CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence 357788877776 68999999999987 68889999999999999888998888888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEE
Q psy2145 582 TNALGEAVTTASMKIK 597 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V~ 597 (808)
|....++.|.|.
T Consensus 83 ----g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 ----GSSKVKFDLKVI 94 (95)
T ss_dssp ----TTEEEEEEEEEE
T ss_pred ----CCceEEEEEEEe
Confidence 667777888875
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=115.35 Aligned_cols=91 Identities=22% Similarity=0.488 Sum_probs=74.1
Q ss_pred CCCeeeecCC---CcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC---eEEEeeCcEEEEEECCCCCCCCE
Q psy2145 502 QRPVFTKPLQ---NIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR---ITTKHDFGYVAMDLSHVRAEDEG 575 (808)
Q Consensus 502 ~~P~f~~~~~---~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~D~G 575 (808)
.+|.|+.++. ....+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....+ +...... .+|.|.+++.+|+|
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G 78 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSDKG 78 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCE--EEESCCEEEEEETTEECCGGGSTTCCEEEGGG--TEEEECSCCGGGCE
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEc--cccCCCEEEEEECCEEcccccccccEEEecCe--EEEEEccCCcCCCE
Confidence 4677876542 33468899999999999 7899999999999999876543 3333332 37999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEE
Q psy2145 576 IYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 576 ~Y~C~a~N~~G~~~~s~~l~V 596 (808)
.|+|.|.|..|....++.|.|
T Consensus 79 ~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 79 NYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEeCCCEEEEEEEEEE
Confidence 999999999999998888877
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=114.21 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=75.8
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCE-Ecc-------CCCcEEEEEe-CCEEEEEEccCCCCC
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV-ELK-------MGSRFHVQHD-FGYVTLDITKCVPAD 705 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~-~l~-------~~~~~~~~~~-~~~~~L~I~~v~~~D 705 (808)
.|.|...+.+ ..+.+|++++|.|.+ .|.|.+.|.|++++. .+. .+.++.+... .+..+|.|.++..+|
T Consensus 6 ~p~~~~~~~~-~~v~~G~~v~L~C~~--~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D 82 (108)
T 3m45_A 6 SQGQFPLTQN-VTVVEGGTAILTCRV--DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSD 82 (108)
T ss_dssp --CCCEECCC-EEEETTSCEEEEEEE--SSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGG
T ss_pred CCCccccCCe-eEEEeCCcEEEEeEE--cCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhH
Confidence 4666666553 678999999999999 799999999999875 222 2347776543 347799999999999
Q ss_pred cEEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 706 SGVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 706 ~G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
+|.|+|.|.| .|..+.++.|.|..+|
T Consensus 83 ~G~Y~C~~~n-~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 83 EGQYTCSLFT-MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp CEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred CeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence 9999999999 9999999999998775
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=113.92 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=78.3
Q ss_pred ccCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 500 ~~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
...+|.|+.++.+...+.+|+.+.|.|.+ +.|.+.|.|+|||..|..+ .++.+..+++...|.|.++..+|+|.|+
T Consensus 12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~---~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 88 (104)
T 1pd6_A 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQ 88 (104)
T ss_dssp CSTTSSCSEECCSEEEEETTSCEEEEEEC---SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEE
T ss_pred ccCCCEEEEcCCCcEEEecCCCEEEEEEE---cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEE
Confidence 45688999999885579999999999997 5888999999999999887 7888887887889999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEE
Q psy2145 579 CKATNALGEAVTTASMKIK 597 (808)
Q Consensus 579 C~a~N~~G~~~~s~~l~V~ 597 (808)
|.|. ....++.|.|.
T Consensus 89 C~a~----~~~~~~~l~V~ 103 (104)
T 1pd6_A 89 CVVG----GEKCSTELFVK 103 (104)
T ss_dssp EEET----TEEECCEEEEE
T ss_pred EEEC----CCcEEEEEEEe
Confidence 9993 45566777775
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=115.32 Aligned_cols=94 Identities=20% Similarity=0.325 Sum_probs=74.9
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCC---CCcEEEEEECCE-ecCC--CCCeEEEee--C----cEEEEEECCC
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGD---PTLKVEWFRNEK-PLED--SSRITTKHD--F----GYVAMDLSHV 569 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~---P~~~v~W~k~g~-~l~~--~~~~~~~~~--~----~~~~L~I~~v 569 (808)
..+.|+..+.++ .+.+|+.++|.|.+ .|. |.|.|.|||++. .+.. +.++.+... . ...+|.|.++
T Consensus 11 ~~~~f~~~P~~v-~V~eG~~v~L~C~v--~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 87 (118)
T 2edn_A 11 PTGVFLKKPDSV-SVETGKDAVVVAKV--NGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKV 87 (118)
T ss_dssp CSSSCSBCCCCC-EEETTSCEECCEEE--ETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSC
T ss_pred CcceEEECCCCe-EEeCCCCEEEEEEE--eccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeC
Confidence 356788888776 69999999999999 554 799999999752 2222 345554322 1 2468999999
Q ss_pred CCCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 570 RAEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 570 ~~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
..+|+|.|+|+|+|..|..++++.|.|..
T Consensus 88 ~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 88 VLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp CTTTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred ChhhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 99999999999999999999999999986
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=113.24 Aligned_cols=92 Identities=15% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCC---cEEEEEECCEecC---CCCCeEEEee------CcEEEEEECCCC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPT---LKVEWFRNEKPLE---DSSRITTKHD------FGYVAMDLSHVR 570 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~---~~v~W~k~g~~l~---~~~~~~~~~~------~~~~~L~I~~v~ 570 (808)
.|.|+..+.++ .+.+|++++|.|.+ .|.|. +.|.|+|++.... ...++.+... .+...|.|.+++
T Consensus 4 ~p~f~~~p~~~-~v~~G~~v~L~C~~--~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 80 (108)
T 3cx2_A 4 IGLFVMRPQDG-EVTVGGSITFSARV--AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80 (108)
T ss_dssp CCSCSBCCCCE-EEETTCCEEEEEEE--ECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCC
T ss_pred ccEEEeCCCcE-EEeCCCCEEEEEEE--CCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCC
Confidence 57888877776 68999999999999 78988 9999999873221 1235544321 124589999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 571 AEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
.+|+|.|+|.|.|..|..++++.|.|.
T Consensus 81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 81 PAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CccCEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 808 | ||||
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 8e-17 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-16 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-16 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-16 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 4e-10 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-16 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-15 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-14 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-14 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-07 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 8e-16 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 1e-15 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 3e-14 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 3e-14 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 6e-07 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-15 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-14 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 9e-14 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 5e-13 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-09 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 1e-14 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 3e-14 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 5e-14 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 1e-13 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 4e-08 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-14 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 3e-14 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 5e-14 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-12 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 6e-09 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 3e-13 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 9e-13 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-12 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 8e-10 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-06 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-12 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 8e-10 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-08 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 3e-08 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 0.002 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 2e-12 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 3e-12 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 8e-12 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-11 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 3e-04 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-12 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-12 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-12 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 7e-12 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-08 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-12 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 6e-10 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 8e-09 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-08 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 4e-04 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 8e-12 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 6e-11 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 2e-10 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 6e-09 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 5e-07 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-11 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 8e-11 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 8e-11 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-10 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 4e-06 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-11 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-10 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-10 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-09 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-07 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 6e-11 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 4e-10 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 3e-09 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 7e-08 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 3e-04 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 6e-11 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 7e-10 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 4e-09 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 3e-08 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 2e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-10 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 2e-09 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 4e-09 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 2e-08 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-05 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 1e-10 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 9e-09 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-08 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 1e-07 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 9e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-10 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 2e-08 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 9e-08 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 2e-07 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 9e-06 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 2e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 2e-09 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-09 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 7e-04 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 2e-10 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 5e-10 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 7e-10 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 8e-10 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 0.003 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-10 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 5e-10 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-08 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-08 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-04 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-10 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 2e-08 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 5e-08 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 2e-05 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-05 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-10 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-09 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-07 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 7e-07 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 9e-06 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 3e-10 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 7e-10 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 1e-09 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 1e-08 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 3e-05 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 4e-10 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 2e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 3e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 0.001 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-09 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-09 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 5e-06 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 1e-09 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 3e-09 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 3e-08 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 7e-07 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 3e-04 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 1e-08 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 1e-07 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 2e-07 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 4e-05 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 3e-08 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 2e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-05 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 6e-08 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 9e-08 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 9e-08 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-07 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 0.004 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 9e-08 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 2e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 9e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 0.004 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 3e-07 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 9e-06 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 3e-05 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 0.002 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 0.003 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 3e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 3e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 4e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 2e-06 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 9e-04 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 4e-07 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 1e-05 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 6e-05 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 3e-04 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 5e-07 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 1e-04 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 3e-04 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 5e-04 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 6e-07 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 9e-06 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 2e-04 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 0.002 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 2e-06 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 3e-06 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 1e-05 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 8e-05 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 2e-06 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 9e-06 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 5e-05 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 6e-05 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 2e-06 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 2e-05 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 3e-05 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 3e-05 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 4e-04 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 4e-06 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 3e-05 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 3e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 6e-06 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 1e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 5e-04 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 0.002 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 8e-06 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 1e-05 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 1e-05 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 4e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 2e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 3e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 7e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 2e-04 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 2e-05 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 3e-05 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 3e-05 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 0.001 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 4e-05 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 0.001 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 0.004 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 5e-05 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 3e-04 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 4e-04 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 6e-04 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 1e-04 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 5e-04 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 2e-04 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 0.001 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 0.001 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 3e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 8e-04 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 5e-04 | |
| d1d5mb1 | 98 | b.1.1.2 (B:93-190) Class II MHC beta chain, C-term | 0.001 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 0.001 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 0.002 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.001 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.002 | |
| d1uvqb1 | 97 | b.1.1.2 (B:95-191) Class II MHC beta chain, C-term | 0.002 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 0.003 | |
| d1uvqa1 | 99 | b.1.1.2 (A:85-183) Class II MHC alpha chain, C-ter | 0.003 | |
| d1neua_ | 119 | b.1.1.1 (A:) Myelin membrane adhesion molecule P0 | 0.004 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (182), Expect = 8e-17
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P ++ +++ G+ ++ + W I+ N+ L
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKS 280
I+ E G YT N LG NL V K
Sbjct: 59 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 95
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 3e-16
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P Q D V ++ ++ G + TW++ IQ S + + L
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
E G YT N+LG L V K
Sbjct: 59 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 3e-16
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + ++ V G++ ++ G + W + K +++S + ++
Sbjct: 1 PQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + R E G Y N LG ++ + K
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 3e-16
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P Q ++ G+S +V G + W +++ V++
Sbjct: 1 PQIIQFPEDQ-KVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I G Y N+ G + +L V K
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 4e-10
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ P+ + +R K+ + W K + + + + L I
Sbjct: 4 IQFPEDQK-VRAGESVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ E G YT N +G + Q L
Sbjct: 61 LAARQEHCGCYTLLVENKLGSRQAQVNLT 89
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 73.4 bits (179), Expect = 2e-16
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
+ +AP +++ + +G AHF R+ V + EW+ N V I+ R
Sbjct: 1 SMEAPKIFERIQSQTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPED 58
Query: 240 FVALDIM-QCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
V ++ EDS +A+N G+ + LLV +K
Sbjct: 59 NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 71.1 bits (173), Expect = 1e-15
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+AP + ++ V + AHF R+ VG + W +NGV I+ S+R+ V
Sbjct: 3 EAPKIFERIQSQTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60
Query: 374 ALN-FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ EDS + +A+N GE + + L V++K
Sbjct: 61 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 68.0 bits (165), Expect = 1e-14
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFG 560
+ P + +Q+ V +G +AHF R+ VG P + EW++N +E S RI +
Sbjct: 3 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 59
Query: 561 YVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ + V ED + KA N GE + A + ++ K
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 67.2 bits (163), Expect = 2e-14
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
E P + + + +G AH+ RVV G P EW+ NGV+++ R +
Sbjct: 3 EAPKIFERIQSQ-TVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDN 59
Query: 694 VTLDITKCV-PADSGVYMCKAINRAGEAVSSTSLKVKSK 731
V + + V DS M KAIN AGE S L V++K
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 46.8 bits (110), Expect = 3e-07
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ +S + + AHF ++ + + EW+KNG + R V +
Sbjct: 8 FERIQSQT-VGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64
Query: 113 -IDTIPEDSGTYTCRAVNLVGFAEVQATLQCRG 144
D EDS + +A+N+ G A L +
Sbjct: 65 IRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 71.5 bits (174), Expect = 8e-16
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 177 EETTTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET- 235
EE P FT ++ + E+ EG A F+C++ +V WF ++ P+K F
Sbjct: 2 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDY 59
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ G +L I + +D YTC+AVN+LG+A + LLV +
Sbjct: 60 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 71.5 bits (174), Expect = 1e-15
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 309 EDTVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS-TM 367
E+ P FT+ + D+ V E AA F+ ++ G +V W ++ P++ S
Sbjct: 2 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDY 59
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ G +L +D YTC+AVN LGEA ++ L VE+
Sbjct: 60 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 67.2 bits (163), Expect = 3e-14
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 630 ERQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH 689
E+ + KP FT+ + E++EG +A +DC+V DP + + N +
Sbjct: 3 EKPHVKPYFTKTILDM-EVVEGSAARFDCKVEGYPDPEVMWFKDDN-PVKESRHFQIDYD 60
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ G +L I++ D Y CKA+N GEA + L V++
Sbjct: 61 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 67.2 bits (163), Expect = 3e-14
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P FTK + +++ V EG A F C++ DP + N E + G
Sbjct: 8 KPYFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDEEGNC 65
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKT 598
++ +S V +D+ Y CKA N+LGEA TA + ++T
Sbjct: 66 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 46.4 bits (109), Expect = 6e-07
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGYVALD 111
+E + E A F+CK+E + +V WFK+ PV F+ + G +L
Sbjct: 12 TKTILDME-VVEGSAARFDCKVEG--YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 68
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
I + +D YTC+AVN +G A A L
Sbjct: 69 ISEVCGDDDAKYTCKAVNSLGEATCTAELL 98
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 69.8 bits (170), Expect = 3e-15
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 504 PVFTKPLQN---IDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-TTKHDF 559
P +T + + AV F C G+P + W +N K + RI K
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59
Query: 560 GYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ ++ + V D+G Y C N G T + +
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 67.9 bits (165), Expect = 1e-14
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 315 APVFTQPM----RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTM-HD 369
AP +T R V F G+ + WL+NG + +R+
Sbjct: 1 APYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVR 58
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ +L + P D G YTC NE G + L V
Sbjct: 59 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 65.6 bits (159), Expect = 9e-14
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 636 PIFTQ---LLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDF 691
P +T + + + + C G+P W NG E K R +
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59
Query: 692 GYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ +L + VP+D G Y C N G + L V
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 63.7 bits (154), Expect = 5e-13
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 183 APIFTTSLKNCE----IKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNN 237
AP +T + K + + F C + + W N K R
Sbjct: 1 APYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVR 58
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+L + +P D G YTC N G + +L V
Sbjct: 59 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 52.5 bits (125), Expect = 3e-09
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 54 TKPKSIEN----LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGYV 108
T + +E + F C + + W KNG+ HR +
Sbjct: 5 TNTEKMEKRLHAVPAANTVKFRCPAGG--NPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 62
Query: 109 ALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+L + +P D G YTC N G L
Sbjct: 63 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.4 bits (166), Expect = 1e-14
Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P F + V EG++A+F CR+ + V W ++++ L+ S + +++
Sbjct: 1 QPRFIVKPYGTE-VGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 57
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ ++ V+ +D+G Y +A N+ G + + +
Sbjct: 58 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.8 bits (162), Expect = 3e-14
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P F E+ EGQ A+F CR+ ++ + V W ++ +K ++ + N L
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 59
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
I + +D G YT RA N+ G L V
Sbjct: 60 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 94
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.5 bits (161), Expect = 5e-14
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+P F GT E+ EGQSA++ CRV+ W + ELK ++ +++
Sbjct: 1 QPRFIVKPYGT-EVGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 57
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSD 733
L I + D G Y +A N G L V S+
Sbjct: 58 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.7 bits (159), Expect = 1e-13
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P F V E Q+A+F R+ + S VTW ++ ++ S + ++ L
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 59
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKA 411
+D G YT RA N G L V +
Sbjct: 60 TINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (117), Expect = 4e-08
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ KP E + E A+F C++ S V W K+ R + ++ ++ L I
Sbjct: 5 IVKPYGTE-VGEGQSANFYCRVIA--SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+D G YT RA N G E L
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 67.9 bits (165), Expect = 1e-14
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + + + + V++G++ C++ G P V W N KPL T
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRATVTDSG----- 55
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + V+ D+G Y C+ATN G+ +++
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 66.7 bits (162), Expect = 3e-14
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P + Q + +GQ C+V G P W N L G R V
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLSGG-RATVTDSG---- 55
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L I D G Y C+A N G+ T ++V
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 65.9 bits (160), Expect = 5e-14
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 183 APIFTTSLKNC-EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
AP + + +K+GQ C++ V W HN P+ G +
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRATVTDSG---- 55
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L I D G Y CRA N G + V+
Sbjct: 56 -LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 62.1 bits (150), Expect = 1e-12
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 315 APVFTQ-PMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
AP + Q P + I V + Q ++ G V W N P+ T
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRATVTDSG---- 55
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
L K D G Y CRA NE G+ + + V
Sbjct: 56 -LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 51.7 bits (123), Expect = 6e-09
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
KP+ + +++ CK+ V W N +P++ G L I
Sbjct: 6 EQKPEKVIVVKQGQDVTIPCKVTG--LPAPNVVWSHNAKPLSGGRATVTDSG-----LVI 58
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
D G Y CRA N G + +Q
Sbjct: 59 KGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 64.6 bits (156), Expect = 3e-13
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELK------------- 680
+PI L + + G + C+V D +W + +
Sbjct: 3 HRPILQAGLPANASTVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60
Query: 681 MGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
+ + D L I D+G Y C A N G + S L V
Sbjct: 61 LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 63.1 bits (152), Expect = 9e-13
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS--------- 550
++ RP+ L + G + F C++ D ++W ++ +
Sbjct: 1 SRHRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYL 58
Query: 551 ----SRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ D + + +V ED G Y C A N++G + +A + +
Sbjct: 59 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 61.9 bits (149), Expect = 2e-12
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 180 TTQAPIFTTSL-KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKS---------- 228
+ PI L N G F C++ SD ++W + S
Sbjct: 1 SRHRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYL 58
Query: 229 ---GSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ T + L I ED+G YTC A N++G + S L V
Sbjct: 59 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 54.6 bits (130), Expect = 8e-10
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 316 PVFTQPM-RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQAS------------- 361
P+ + + F ++ D++ + W+++ +
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62
Query: 362 NRVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
D L + ED+G YTC A N +G + S+ L V
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 44.2 bits (103), Expect = 4e-06
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPV-------------TIGHR 98
P + G F CK+ +D+ ++W K+ +
Sbjct: 8 QAGLPANAS-TVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64
Query: 99 FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
D L I + ED+G YTC A N +G + A L
Sbjct: 65 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (148), Expect = 2e-12
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF-HVQHDFG 692
P F ++ E+ GQ A + C + R V
Sbjct: 1 RTPHFLRI--QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 58
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
+ ++ D+G Y C G +S+ L VK
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.3 bits (129), Expect = 8e-10
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP-IKSGSRFTETNNFGF 240
+ P F ++N E+ GQ A F+C I + ++ +V ++
Sbjct: 1 RTPHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ +++ D+G Y C G +++ LV
Sbjct: 60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 94
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 2e-08
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVP---IQASNRVSTMHDF 370
+ P F + +++ V Q A F+ +G + G+ T
Sbjct: 1 RTPHFLRI-QNVEVNAGQFATFQCSA--IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 57
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS-TLFV 407
+ N T D+G Y C E G +++ L V
Sbjct: 58 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 3e-08
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKP---LEDSSRITTKHD 558
+ P F + +QN++ V G+ A F C +G + T
Sbjct: 1 RTPHFLR-IQNVE-VNAGQFATFQCSA--IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSR 56
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAV-TTASMKIK 597
+ ++ + D G Y C G + A + +K
Sbjct: 57 RFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGYVALDI 112
+ +++E + A F+C T + ++ + + ++
Sbjct: 6 LRIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV 64
Query: 113 IDTIPEDSGTYTCRAVNLVGFA 134
++T D+G Y C G
Sbjct: 65 VNTTKRDAGKYRCMIRTEGGVG 86
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P + + + E G + C V W + P+ S +R + L
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVSGGE----L 55
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ + EDSG+Y C A N G S L V +
Sbjct: 56 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 60.7 bits (146), Expect = 3e-12
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P + + + + + G + +SC G P V W R+ +PL +RI
Sbjct: 1 QPDWLDVITDTE-ADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVSGGE--- 54
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ S + ED G+Y C A N G +A + ++
Sbjct: 55 -LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 59.9 bits (144), Expect = 8e-12
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P + + D + G + V WLR+G P+ + NR+ L
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVSGGE----L 55
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
F EDSG Y C A N+ G S+ L V++
Sbjct: 56 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 59.1 bits (142), Expect = 1e-11
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
+P + ++T T E G + C G P W +G L + +
Sbjct: 1 QPDWLDVITDT-EADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLAS----QNRIEVSGG 53
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L +K V DSG+Y C A N+ G +S L V++
Sbjct: 54 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.3 bits (88), Expect = 3e-04
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+ E + C V W ++G+P+ +R L
Sbjct: 5 LDVITDTE-ADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGGE----LRF 57
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ EDSG Y C A N G A L
Sbjct: 58 SKLVLEDSGMYQCVAENKHGTVYASAELT 86
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
T ++ + EG+ A F C + V W + + +R T +I
Sbjct: 2 ILTKPRSMTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEI 59
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
D G Y+ N+ G+ L +
Sbjct: 60 SSVQASDEGNYSVVVENSEGKQEAEFTLTI 89
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
+++ V EG++A FSC G+P V W R + L S+R +
Sbjct: 2 ILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 58
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+S V+A DEG Y N+ G+ ++ I+
Sbjct: 59 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 60.3 bits (145), Expect = 5e-12
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
+ EG+SA + C G+P W G L +R V T +I+ +D
Sbjct: 10 TVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDE 67
Query: 707 GVYMCKAINRAGEAVSSTSLKVK 729
G Y N G+ + +L ++
Sbjct: 68 GNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 59.9 bits (144), Expect = 7e-12
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
R + V E ++A F G+ VTWLR G + S R
Sbjct: 2 ILTKPRSMTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEI 59
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
D G Y+ N G+ TL ++
Sbjct: 60 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 50.6 bits (120), Expect = 1e-08
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+TKP+S+ + E A F C + + V W + G+ ++ R + +I
Sbjct: 3 LTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEI 59
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
D G Y+ N G E + TL
Sbjct: 60 SSVQASDEGNYSVVVENSEGKQEAEFTLT 88
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 61.0 bits (147), Expect = 3e-12
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 9/100 (9%)
Query: 631 RQYEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD 690
RQY P + + GQ +C G+P + +W +
Sbjct: 1 RQYA-PSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDG------SQTSKWL 51
Query: 691 FGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
L I D G Y C+A N G + + +
Sbjct: 52 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 54.4 bits (130), Expect = 6e-10
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 183 APIFTTSL-KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
AP + GQ EC + +++W + T
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECF--AFGNPVPQIKWRKLDGS------QTSKWLSSEP 55
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
L I ED G Y C A N G+ G +++H+
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 51.4 bits (122), Expect = 8e-09
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P G+ C G+P +++W + + T+K
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECF--AFGNPVPQIKWRKLDGS------QTSKWLSSEPL 56
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + +V EDEG Y C+A N G + I
Sbjct: 57 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 49.8 bits (118), Expect = 3e-08
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ + D + Q E G+ ++ W + ++ L
Sbjct: 6 SIKAKFPADTYALTGQMVTLECF--AFGNPVPQIKWRKL------DGSQTSKWLSSEPLL 57
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+ + ED GTY C A N G + + +
Sbjct: 58 HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 91
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 37.9 bits (87), Expect = 4e-04
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
P EC + +++W K L
Sbjct: 8 KAKFPADTY-ALTGQMVTLECFAF--GNPVPQIKWRKLD------GSQTSKWLSSEPLLH 58
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
I + ED GTY C A N+ G Q +
Sbjct: 59 IQNVDFEDEGTYECEAENIKGRDTYQGRII 88
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 8e-12
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFGFVA 242
+ T L++ G+R EC VS++ V+WF N I G +
Sbjct: 2 MVTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 58
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I D+ Y+ +S L V K
Sbjct: 59 LIIEGATKADAAEYSVMTTG----GQSSAKLSVDLK 90
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 6e-11
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRN--EKPLEDSSRITTKHDFGYVA 563
TK L++ G+ C V + V+WF+N E SR + +
Sbjct: 3 VTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 58
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMK 595
+ + D Y T A + +K
Sbjct: 59 LIIEGATKADAAEYSVMTTGGQSSAKLSVDLK 90
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 2e-10
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 9/95 (9%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV--STMHDFGYVAL 375
T+ + D + E V + V W +NG I + + L
Sbjct: 3 VTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 59
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ D+ Y+ A L V+ K
Sbjct: 60 IIEGATKADAAEYSVMTTGGQSSA----KLSVDLK 90
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 6e-09
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH--VQHDFGYV 694
+ T+ L T G+ +C V + +WF NG E+ G + ++ +
Sbjct: 2 MVTKQLEDT-TAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 57
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
L I AD+ Y SS L V K
Sbjct: 58 ILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLK 90
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 5e-07
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI--HDFGYVA 109
VTK EC+ V++ + V+WFKNG + G + R +
Sbjct: 2 MVTKQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 58
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEV 136
L I D+ Y+ A++
Sbjct: 59 LIIEGATKADAAEYSVMTTGGQSSAKL 85
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.3 bits (140), Expect = 3e-11
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG--YVTLDITKCVPADSG 707
GQS C G P W +G ++ +H F L I D
Sbjct: 19 LGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 76
Query: 708 VYMCKAINRAGEAVSSTSLKVKSK 731
Y+C A N+AGE +S LKV +K
Sbjct: 77 EYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.2 bits (137), Expect = 8e-11
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 504 PVFTKPLQNIDA-VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P ++A G++ C G P + W ++ +P+E+ KH F
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61
Query: 563 AMDLSH--VRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ +L+ V DE Y+C A N GE + +K+ K
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.2 bits (137), Expect = 8e-11
Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 184 PIFTT--SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
P S+ N GQ C + TM + + +
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
L I D Y C A N G+ S +L V +K
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.7 bits (133), Expect = 3e-10
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 316 PVFT--QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFG-- 371
P Q + + Q+ G + ++W ++G PI+ H F
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61
Query: 372 YVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L + D Y C A N+ GE S L V +K
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.7 bits (102), Expect = 4e-06
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 52 TVTKPKSIENL--RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG--Y 107
TV +SI N C + + W K+G P+ H F
Sbjct: 5 TVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I + D Y C A N G + L+
Sbjct: 63 SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 3e-11
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFG 560
K+ F K L+ V +G + + D +V+W +N + ++ S G
Sbjct: 3 KKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIG 59
Query: 561 YVA-MDLSHVRAEDEGIYICKATNALGEA 588
+ +S D+ Y C
Sbjct: 60 AKRTLTISQCSLADDAAYQCVVGGEKCST 88
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 1e-10
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
+ F + L ++ +G + D +W NG E++M ++ G
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60
Query: 694 V-TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
TL I++C AD Y C G ST L VK
Sbjct: 61 KRTLTISQCSLADDAAYQC----VVGGEKCSTELFVK 93
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 4e-10
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 182 QAPIFTTSLKNC-EIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
++ F L+ ++ +G + ++D+ +V+W N I+ + G
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60
Query: 241 VA-LDIMQCLPEDSGVYTCRAVNALGQA 267
L I QC D Y C
Sbjct: 61 KRTLTISQCSLADDAAYQCVVGGEKCST 88
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 4e-09
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 314 QAPVFTQPMRDIH-VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
++ F + + + V++ + D +V WL+NG IQ S G
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60
Query: 373 VA-LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L D Y C G S+ LFV+
Sbjct: 61 KRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 93
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 3e-07
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA-LD 111
K + + + + + D + +V+W KNG+ + + G L
Sbjct: 9 QKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLT 65
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEV 136
I D Y C E+
Sbjct: 66 ISQCSLADDAAYQCVVGGEKCSTEL 90
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 6e-11
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD-------I 698
S G A C G P + WF +G+ + + L+
Sbjct: 12 SSATIGNRAVLTCSE-QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 70
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+D+G Y C+A N G ++S +++++
Sbjct: 71 DPLSASDTGEYSCEARNGYGTPMTSNAVRME 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 4e-10
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P P G A +C G P + WF++ + + + T
Sbjct: 6 PTVNIPSS----ATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 564 MD-------LSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + A D G Y C+A N G +T+ +++++
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 3e-09
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P T G RA C + WF + + + + + T + L
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61
Query: 244 D-------IMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ D+G Y+C A N G +TS + +
Sbjct: 62 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 7e-08
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P A G + TW ++G+ + + + + L
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61
Query: 376 N-------FKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
N F D+G Y+C A N G +TS+ + +E
Sbjct: 62 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 8/89 (8%)
Query: 60 ENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD-------I 112
+ A C E + WFK+G + + L+
Sbjct: 12 SSATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 70
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
D+G Y+C A N G ++
Sbjct: 71 DPLSASDTGEYSCEARNGYGTPMTSNAVR 99
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 57.1 bits (137), Expect = 6e-11
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDI 245
L E+ G+ AHFE +S+ + +W P+ + + L +
Sbjct: 4 VEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
C +G + +A N A ++ NL V
Sbjct: 61 HNCQLGMTGEVSFQAAN----AKSAANLKVK 87
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 54.0 bits (129), Expect = 7e-10
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMD 565
KPL ++ V G+ AHF + +P + +W +PL S D +
Sbjct: 4 VEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILI 59
Query: 566 LSHVRAEDEGIYICKATNALGEA 588
L + + G +A NA A
Sbjct: 60 LHNCQLGMTGEVSFQAANAKSAA 82
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 52.1 bits (124), Expect = 4e-09
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNF 377
+P+ + V + AHFE + + + W G P+ AS + D L
Sbjct: 4 VEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+G + +A A +++ L V+
Sbjct: 61 HNCQLGMTGEVSFQA----ANAKSAANLKVK 87
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 49.4 bits (117), Expect = 3e-08
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
E+ G++AH++ + +P + +W + G L + D L + C +
Sbjct: 12 EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMT 68
Query: 707 GVYMCKAINRAGEAVSSTSLKVK 729
G + A A S+ +LKVK
Sbjct: 69 GEVSFQ----AANAKSAANLKVK 87
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 41.7 bits (97), Expect = 2e-05
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
V KP + AHFE + +++ ++ +W G+P+T I D L +
Sbjct: 4 VEKPLYGVEVFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEV 136
+ +G + +A N A +
Sbjct: 61 HNCQLGMTGEVSFQAANAKSAANL 84
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (135), Expect = 1e-10
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADS 706
+ +GQ +C V + +P +++ V+ V L + +D+
Sbjct: 7 TVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDA 66
Query: 707 GVYMCKAINRAGEAVS-STSLKVK 729
G Y C+ + +S L V+
Sbjct: 67 GRYWCQVEDGGETEISQPVWLTVE 90
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (126), Expect = 2e-09
Identities = 12/75 (16%), Positives = 25/75 (33%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
V +G+ +C + + +P ++ D I + L V D G
Sbjct: 8 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAG 67
Query: 576 IYICKATNALGEAVT 590
Y C+ + ++
Sbjct: 68 RYWCQVEDGGETEIS 82
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 4e-09
Identities = 9/80 (11%), Positives = 23/80 (28%)
Query: 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLP 250
+ +GQ C + + + ++ V + L +
Sbjct: 4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63
Query: 251 EDSGVYTCRAVNALGQAVTS 270
D+G Y C+ + ++
Sbjct: 64 SDAGRYWCQVEDGGETEISQ 83
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 320 QPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD--FGYVALNF 377
P + V++ Q + G + + W+++G +Q +++ L+
Sbjct: 2 AP-VKLTVSQGQPVKLNCSV--EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 58
Query: 378 KYTYPEDSGTYTCRAVNELGEAVTSS-TLFVE 408
K D+G Y C+ + ++ L VE
Sbjct: 59 KSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 2/90 (2%)
Query: 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDT 115
P + + + C +E + + +++ L +
Sbjct: 3 PVKLT-VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 61
Query: 116 IPEDSGTYTCRAVNLVGFAEVQ-ATLQCRG 144
D+G Y C+ + Q L G
Sbjct: 62 ERSDAGRYWCQVEDGGETEISQPVWLTVEG 91
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 1e-10
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 10/110 (9%)
Query: 185 IFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKS---------GSRFTE 234
+F + +K G+ F ++ ++WF + F
Sbjct: 2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQTE 284
+ + I++ +G Y C S +L VH
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN 111
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 9e-09
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 637 IFTQLLTGTSEIMEGQSAHYDCRVVP---VGDPTMRFEWFVNGVEL-------KMGSRFH 686
+F + G + G+ + +V + PT+++ ++ F
Sbjct: 2 LFIEKPQGG-TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 60
Query: 687 VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
+ I K +G Y C+ + S L+V +
Sbjct: 61 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN 111
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-08
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 505 VFTKPLQNIDAVEEGKNAHFSCRLIP---VGDPTLKVEWF-------RNEKPLEDSSRIT 554
+F + Q V+ G++ F ++ + PT+K + K L+
Sbjct: 2 LFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 60
Query: 555 TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
M + + G Y C+ T + +++ G
Sbjct: 61 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 107
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 1e-07
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 10/104 (9%)
Query: 317 VFTQPMRDIHVAENQAAHFEARLIPV-GDSKLKVTW---------LRNGVPIQASNRVST 366
+F + + V + F A++ K + W + G +Q
Sbjct: 2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 367 MHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
+ +G Y C + S L V
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 105
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 9e-05
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 11/106 (10%)
Query: 53 VTKPKSIENLRERGHAHFECKLEP----------VTDSNLKVEWFKNGRPVTIGHRFRPI 102
+ KP+ ++ F K++ K G+ + + F
Sbjct: 4 IEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62
Query: 103 HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGI 148
+ II +G Y C F L+ S G
Sbjct: 63 SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 1e-10
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRL----------IPVSDNTMKVEWFHNNVPIKSGSRF 232
+F ++ E+ G F R+ + ++ +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 233 TETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ L I P +G Y C ++ NL VH
Sbjct: 64 DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 2e-08
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVV---PVGDPTMRFE-------WFVNGVELKMGSR 684
+F E+ G S + RV + P +++ G L++
Sbjct: 4 IGLFVMRPQDG-EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 685 FHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
+ L IT PA +G Y C+ + S+ +L V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 9e-08
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLK---VEWFRNEKPLEDSS--------- 551
+F Q+ + V G + FS R G LK V+WF+ + S
Sbjct: 5 GLFVMRPQDGE-VTVGGSITFSAR--VAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 552 RITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ ++ + G Y C+ + + ++ +
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 10/104 (9%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPV-GDSKLKVTWLRN---------GVPIQASNRV 364
+F +D V + F AR+ V W + G +Q +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L+ P +G Y C + ++ L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 9e-06
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPV-TDSNLKVEWFKN---------GRPVTIGHRFRPI 102
V +P+ E + G F ++ V+WFK G+ + + +
Sbjct: 8 VMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 103 HDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L I D P +G Y C F L
Sbjct: 67 SKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.9 bits (136), Expect = 2e-10
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI-------- 553
+P + P V G A +C G P + WF++ + +
Sbjct: 4 SKPTISVPSS----VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58
Query: 554 TTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ D + V A D G Y C+A N G A+ + + +
Sbjct: 59 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.2 bits (134), Expect = 3e-10
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ--------HDFGYVTLD 697
S + G A C G P + WF +G+ + + D L
Sbjct: 12 SSVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 70
Query: 698 ITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
DSG Y C+A N G A+ S + +
Sbjct: 71 FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--------TET 235
P T + G RA C + WF + + + + + T
Sbjct: 3 PSKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61
Query: 236 NNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ L DSG Y C+A N G A+ S +
Sbjct: 62 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.7 bits (125), Expect = 4e-09
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTM-------- 367
P V A G + +W ++G+ + ++ T
Sbjct: 3 PSKPTISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61
Query: 368 HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
D L F DSG Y C+A N G A+ S ++
Sbjct: 62 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 9/89 (10%)
Query: 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF--------RPIHDFGYVALDI 112
++ A C E + WFK+G + D L
Sbjct: 13 SVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 71
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
DSG Y C+A N G A
Sbjct: 72 DPVTAFDSGEYYCQAQNGYGTAMRSEAAH 100
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (134), Expect = 2e-10
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P R I + + E +G TW + + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ F DSG Y + NELGE + V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.0 bits (131), Expect = 5e-10
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
KP +I G + + + + G P W V + V
Sbjct: 2 KPKILTASRKI-KIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
++ ADSG Y K N GE + + V+
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (129), Expect = 7e-10
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P T+ + +IK G + E + W + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ DSG Y + N LG+ ++V
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (129), Expect = 8e-10
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P + I ++ G + +G P W + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
++ + D G Y K N LGE + ++
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (81), Expect = 0.003
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+T + I+ ++ + E + W + ++
Sbjct: 6 LTASRKIK-IKAGFTHNLEVDFIG--APDPTATWTVGDSGAALAPELLVDAKSSTTSIFF 62
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATL 140
DSG Y + N +G E +
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 55.7 bits (133), Expect = 2e-10
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 504 PVFTKPLQNIDAVE--EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
PVF + + E + +CR +P W N L+ + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVT 590
+ + + V+A+D G Y C ATNA G V+
Sbjct: 63 L-VISNPVKAKDAGSYQCVATNARGTVVS 90
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 54.9 bits (131), Expect = 5e-10
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 631 RQYEKPIFTQLLTGTS--EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ 688
R Y P+F + T E + CR +P + W +NG ELKMG +
Sbjct: 1 RSY-GPVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYR 57
Query: 689 HDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724
+ D+G Y C A N G VS
Sbjct: 58 LVA-GDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 183 APIFTTSLKNCEIKEG---QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFG 239
P+F + EG ++ CR ++ W N +K G G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 240 FVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
+ + +D+G Y C A NA G V+
Sbjct: 62 DL-VISNPVKAKDAGSYQCVATNARGTVVSR 91
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 313 SQAPVFTQPMRDIHVAE---NQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD 369
S PVF + E + R + W NG ++
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
G + + +D+G+Y C A N G V+
Sbjct: 60 AGDL-VISNPVKAKDAGSYQCVATNARGTVVSRE 92
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 53 VTKPKSIENLR--ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVAL 110
+P C+ + W NG + +G R G + +
Sbjct: 8 EEQPAHTLFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAGDL-V 64
Query: 111 DIIDTIPEDSGTYTCRAVNLVGFAE-VQATLQ 141
+D+G+Y C A N G +A+L+
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 3e-10
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 646 SEIMEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKMGSRFH-----VQHDFGYVTLDIT 699
+ + S H+ C V G+P +WF NG L H + L +
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLD 67
Query: 700 KCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDI 734
++G Y A N G+ S I
Sbjct: 68 NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 2e-08
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 512 NIDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSSRIT-----TKHDFGYVAMD 565
I +E + H C V G+P ++WF N L +S I T H + +
Sbjct: 6 TITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQ 65
Query: 566 LSHVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
L + + G Y A N G+ S G
Sbjct: 66 LDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 5e-08
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 6/94 (6%)
Query: 194 EIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTE-----TNNFGFVALDIMQ 247
++ H C V N ++WF+N + + L +
Sbjct: 9 FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSI 281
++G YT A N G+ + I
Sbjct: 69 PTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPI-----HDFG 106
V +I L H C V + ++WF NG + H
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQCRGSAGI 148
+ L + + ++G YT A N G E Q + G GI
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 3e-05
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPV-GDSKLKVTWLRNGVPIQASNRVSTM--- 367
V AP T + + H V G+ K + W NG + S + T
Sbjct: 1 VHFAPTITF------LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHV 54
Query: 368 --HDFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
H + L ++G YT A NE G+ +
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 3e-10
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRL-----IPVSDNTMKVEWFHNNVPIKSGSRFTETNNF 238
P + I EG+ A C+ + + + S SRF +++
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 239 GFVALDIMQ-CLPEDSGVYTCRAVNALGQAVTSGNLLV 275
G L I + D G Y C ++ G L V
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 3e-09
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR-------FEWFVNGVELKMGSRFHVQ 688
P + + + I EG++A C+ P + + + SRF V
Sbjct: 3 PRVKAVKS-SEHINEGETAMLVCKSE--SVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59
Query: 689 HDFGYVTLDITKCVPAD-SGVYMCKAINRAGEAVSSTSLKVK 729
G L I G Y C + G + +L+V+
Sbjct: 60 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 3e-07
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKV-------EWFRNEKPLEDSSRITTK 556
P + + EG+ A C+ P + + SR
Sbjct: 3 PRVKAVKSSEH-INEGETAMLVCKS--ESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59
Query: 557 HDFGYVAMDLSHVRAED-EGIYICKATNALGEAVTTASMKIK 597
G + + ++ E G Y C T++ G +++++
Sbjct: 60 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 7e-07
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 6/98 (6%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARL-----IPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
P H+ E + A + + + + +R
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 371 GYVALN-FKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
G L+ D G Y C + G TL V
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 9e-06
Identities = 22/98 (22%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 52 TVTKPKSIENLRERGHAHFECKLE-----PVTDSNLKVEWFKNGRPVTIGHRFRPIHDFG 106
V KS E++ E A CK E + RF G
Sbjct: 4 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 63
Query: 107 YVALDIID-TIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
L I + + D G Y C + G + TL+ R
Sbjct: 64 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 3e-10
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 8/93 (8%)
Query: 194 EIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTE-------TNNFGFVALDI 245
++ H C V + W N + S L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 246 MQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
Q ++G YT A N GQA S
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 7e-10
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 647 EIMEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKMGSRFHVQ-------HDFGYVTLDI 698
++ H+ C V G P W NG L S + + L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 699 TKCVPADSGVYMCKAINRAGEAVSSTSLKVKSK 731
+ ++G Y A N G+A +S
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 1e-09
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 516 VEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSSRITT-------KHDFGYVAMDLS 567
+ H C V G P + W N L ++S I T + + L+
Sbjct: 9 LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 68
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ G Y A N G+A +
Sbjct: 69 QPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 1e-08
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 323 RDIHVAENQAAHFEARLIPV-GDSKLKVTWLRNGVPIQASNRVSTM-------HDFGYVA 374
+ + H V G + WL NG + ++ + T +
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
L ++G YT A N G+A S
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 9/94 (9%)
Query: 56 PKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVT-------IGHRFRPIHDFGY 107
P S+ L H C V + W NG + +
Sbjct: 4 PASV-QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62
Query: 108 VALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L + ++G YT A N G A
Sbjct: 63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 55.1 bits (131), Expect = 4e-10
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Query: 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV 241
+ P+ +E EC ++ + + +
Sbjct: 1 KYPVLKDQPAEVLFRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 58
Query: 242 ALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
+L ++ D G Y C A G A +
Sbjct: 59 SLVFLRPQASDEGHYQCFAETPAGVASSR 87
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 51.2 bits (121), Expect = 1e-08
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 2/96 (2%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYV 373
+ PV ++ EN E + + + + +
Sbjct: 1 KYPVLKDQPAEVLFRENNPTVLECIIEG--NDQGVKYSWKKDGKSYNWQEHNAALRKDEG 58
Query: 374 ALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
+L F D G Y C A G A + F ++
Sbjct: 59 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 50.0 bits (118), Expect = 2e-08
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 3/91 (3%)
Query: 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGY 561
+ PV + E C + + ++ + +
Sbjct: 1 KYPVLKDQPAEV-LFRENNPTVLECIIEG--NDQGVKYSWKKDGKSYNWQEHNAALRKDE 57
Query: 562 VAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
++ +A DEG Y C A G A +
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVASSRV 88
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 50.0 bits (118), Expect = 3e-08
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGY 693
+ P+ E +C + + + + +
Sbjct: 1 KYPVLKDQPAEVL-FRENNPTVLECIIEG--NDQGVKYSWKKDGKSYNWQEHNAALRKDE 57
Query: 694 VTLDITKCVPADSGVYMCKAINRAGEAVSST-SLKV 728
+L + +D G Y C A AG A S S +
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.6 bits (83), Expect = 0.001
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 3/82 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
+P + RE EC + +K +L
Sbjct: 6 KDQPAEVL-FRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF 62
Query: 113 IDTIPEDSGTYTCRAVNLVGFA 134
+ D G Y C A G A
Sbjct: 63 LRPQASDEGHYQCFAETPAGVA 84
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 1e-09
Identities = 22/131 (16%), Positives = 32/131 (24%), Gaps = 36/131 (27%)
Query: 631 RQYEKPIFTQLLTGTS----EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL------- 679
RQ E P G ++ G D + GDP W +
Sbjct: 1 RQ-EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPARP 57
Query: 680 ----------------------KMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717
+ R V+ + D GVY N
Sbjct: 58 APDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPV 117
Query: 718 GEAVSSTSLKV 728
GE + ++KV
Sbjct: 118 GEDQVNLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 3e-09
Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 2/93 (2%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P + + P F + ++ R
Sbjct: 39 PTVIWQKAITQGNKAPARPAPDA--PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF 96
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ ED GVYT N +G+ + + V
Sbjct: 97 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 1e-07
Identities = 19/97 (19%), Positives = 28/97 (28%)
Query: 311 TVSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDF 370
+S P T + N+A A P + + RV
Sbjct: 32 PISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK 91
Query: 371 GYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ ED G YT N +GE + T+ V
Sbjct: 92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 3e-07
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 31/110 (28%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPL---------------------------- 547
V G + GDP V W +
Sbjct: 21 VVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 78
Query: 548 -EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
E R+ + + EDEG+Y N +GE ++K+
Sbjct: 79 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 5e-06
Identities = 14/75 (18%), Positives = 19/75 (25%)
Query: 67 HAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCR 126
P + F R R + ED G YT
Sbjct: 53 APARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVT 112
Query: 127 AVNLVGFAEVQATLQ 141
N VG +V T++
Sbjct: 113 VKNPVGEDQVNLTVK 127
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.8 bits (128), Expect = 1e-09
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
K +F T E EG+ A C VV W G ++ +
Sbjct: 1 KLMFKNAPT-PQEFKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 57
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
I D G Y C+ A ++ ++V
Sbjct: 58 LQ-IRGIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.6 bits (125), Expect = 3e-09
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+ +F + +EG++A C + V + W + + +
Sbjct: 1 KLMFKNAPTPQE-FKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 57
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + ++ DEG Y C+ + +++
Sbjct: 58 -LQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.5 bits (117), Expect = 3e-08
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+F + E KEG+ A C + VS + W H +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ 59
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
I D G Y C + ++ V
Sbjct: 60 -IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.7 bits (107), Expect = 7e-07
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 3/92 (3%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+F E + A + V + W G + V +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ 59
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ D GTY C + + V
Sbjct: 60 -IRGIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 19/89 (21%), Positives = 24/89 (26%), Gaps = 4/89 (4%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDI 112
P E +E A C + + W GR V + R I I
Sbjct: 5 KNAPTPQE-FKEGEDAVIVCDVVS--SLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-I 60
Query: 113 IDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
D GTY C L +Q
Sbjct: 61 RGIKKTDEGTYRCEGRILARGEINFKDIQ 89
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 1e-08
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P FT +D+ V N + + W R I ++
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAPSPSVL------- 53
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSS 403
T S ++C A N G A + +
Sbjct: 54 --NVTGVTQSTMFSCEAHNLKGLASSRT 79
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 1e-07
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P FT +++ V SC + + W+R + + +
Sbjct: 2 PFFTVEPKDLA-VPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAPSPSVL------ 53
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVT-TASMKIK 597
+ ++ C+A N G A + TA++ ++
Sbjct: 54 ---NVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 85
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 2e-07
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 10/87 (11%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P FT K+ + C + + W+ I + N
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTG--- 57
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTS 270
S +++C A N G A +
Sbjct: 58 ------VTQSTMFSCEAHNLKGLASSR 78
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 4e-05
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P FT + + C V + W+ ++ + +
Sbjct: 2 PFFTVEPKDLA-VPPNAPFQLSCEAVG-PPEPVTIVWWRGTTKIGGPAPSPSVLNVTG-- 57
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSST-SLKVK 729
S ++ C+A N G A S T ++ ++
Sbjct: 58 -------VTQSTMFSCEAHNLKGLASSRTATVHLQ 85
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 3e-08
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 647 EIMEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKMG----SRFHVQHDFGYVTLDITKC 701
+ E + C V G+P W NG L+ ++ + + L K
Sbjct: 10 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 69
Query: 702 VPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737
++G Y A N G A + + + V E
Sbjct: 70 THYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDE 105
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 1e-06
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 194 EIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSG----SRFTETNNFGFVALDIMQC 248
++E + C V N + W HN P++ + + L +
Sbjct: 10 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 69
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVHSK 278
++G YT A N LG A + N +
Sbjct: 70 THYNNGNYTLIAKNPLGTANQTINGHFLKE 99
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 513 IDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDS----SRITTKHDFGYVAMDLS 567
+ ++EE + C V G+P + W N +PL +S + + + +
Sbjct: 8 VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFN 67
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTKAG 601
+ G Y A N LG A T + +
Sbjct: 68 KPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 101
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 321 PMRDIHVAENQAAHFEARLIPV-GDSKLKVTWLRNGVPIQAS----NRVSTMHDFGYVAL 375
P R + + E + V G+ + WL NG P++ S + L
Sbjct: 5 PPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCL 64
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESK 410
F ++G YT A N LG A + +
Sbjct: 65 LFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIG----HRFRPIHDFG 106
TV P + +L E C V + + W NG+P+ + +
Sbjct: 1 TVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 60
Query: 107 YVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
L ++G YT A N +G A
Sbjct: 61 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.8 bits (115), Expect = 6e-08
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
V + R V F + W R S + L
Sbjct: 3 MVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG-----IL 56
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
+ P D+GTY C N ++TL V+
Sbjct: 57 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.4 bits (114), Expect = 9e-08
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 6/94 (6%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
+ T + + G + C P W
Sbjct: 2 IMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRAMDFNG-----I 55
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L I P+D+G Y+C N + +L V+
Sbjct: 56 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.4 bits (114), Expect = 9e-08
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
V + ++ +V G + F C P + W R S +
Sbjct: 3 MVTVEEQRSQ-SVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG-----I 55
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + +V+ D G Y+C +N TA++ ++
Sbjct: 56 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.9 bits (110), Expect = 2e-07
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 6/92 (6%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+ ++ ++ G F C + W + L
Sbjct: 3 MVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-----L 56
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
I P D+G Y C N + L V
Sbjct: 57 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.0 bits (79), Expect = 0.004
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALD 111
TV + +S +R F C + + W + L
Sbjct: 5 TVEEQRSQS-VRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRAMDFNG-----ILT 57
Query: 112 IIDTIPEDSGTYTCRAVNLVGFAEVQATLQCR 143
I + P D+GTY C N+ + ATL +
Sbjct: 58 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 9e-08
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 15/106 (14%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI--------- 553
RPV P V+ G C G + W N +++ +
Sbjct: 1 RPVIVSPANETMEVDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVE 58
Query: 554 ---TTKHDFGYVAMDLSHVRAEDEGI-YICKATNALGEAVTTASMK 595
+ +++S + + + C A N G +
Sbjct: 59 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 2e-07
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 11/105 (10%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEW----------FVNGVELKMGSR 684
+P+ T E+ G C V ++W + + +
Sbjct: 1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60
Query: 685 FHVQHDFGYVTLDITKCVPADSGV-YMCKAINRAGEAVSSTSLKV 728
+ + L+I++ + C A N G + L
Sbjct: 61 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 9e-07
Identities = 18/106 (16%), Positives = 22/106 (20%), Gaps = 16/106 (15%)
Query: 316 PVFTQPMRD-IHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVS--------- 365
PV P + + V G W NG I + V
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59
Query: 366 ---TMHDFGYVALNFKYTYPEDSGT-YTCRAVNELGEAVTSSTLFV 407
LN +TC A N G L
Sbjct: 60 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (81), Expect = 0.004
Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 15/105 (14%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF----------- 232
I + + + E+ G + C + W N I
Sbjct: 3 VIVSPANETMEVDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60
Query: 233 -TETNNFGFVALDIMQCLPEDSGV-YTCRAVNALGQAVTSGNLLV 275
+ + L+I + +TC A N G L+
Sbjct: 61 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 3e-07
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 6/105 (5%)
Query: 180 TTQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV-----PIKSGSRFTE 234
T P +S + G++ +C + + NV +
Sbjct: 3 TVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 62
Query: 235 TNNFGFVALDIMQCLPE-DSGVYTCRAVNALGQAVTSGNLLVHSK 278
T L I + +Y C A N+ G L
Sbjct: 63 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 9e-06
Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGV-----ELKMGSRFHVQHD 690
PI + T + G+ C + P + V + +
Sbjct: 8 PIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65
Query: 691 FGYVTLDITKCVPA-DSGVYMCKAINRAGEAVSSTSLKVKSK 731
TL I+ V A +Y C A N G LK +
Sbjct: 66 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 6/103 (5%)
Query: 314 QAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTW-----LRNGVPIQASNRVSTMH 368
P + H + + + L +G + + +
Sbjct: 5 NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64
Query: 369 DFGYVALNFKYTYPE-DSGTYTCRAVNELGEAVTSSTLFVESK 410
+ L Y C A N G L +
Sbjct: 65 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.002
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 500 TKQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI------ 553
T P Q A+ G+ C I P ++ W E LE +
Sbjct: 3 TVNGPPIISSTQTQHALH-GEKGQIKCF-IRSTPPPDRIAWSWKENVLESGTSGRYTVET 60
Query: 554 TTKHDFGYVAMDLSHVRAE-DEGIYICKATNALGEAVTTASMKIK 597
+ + + +S++ + IY C A N+ G +K +
Sbjct: 61 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 105
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.003
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 11/105 (10%)
Query: 52 TVTKPKSIENLR-----ERGHAHFECKLEPVTDSNLKVEWFKNGR-----PVTIGHRFRP 101
TV P I + + +C + + +K
Sbjct: 3 TVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 62
Query: 102 IHDFGYVALDIIDTIPE-DSGTYTCRAVNLVGFAEVQATLQCRGS 145
+ L I + + Y C A N G L+ +GS
Sbjct: 63 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 107
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 3e-07
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 5/105 (4%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPV-GDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
++ VA ++ E R+ V L + R +
Sbjct: 3 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62
Query: 375 --LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDT 417
N + ++C AV +L +F + A L+
Sbjct: 63 ATFNSTADREDGHRNFSCLAVLDLMSR--GGNIFHKHSAPKMLEI 105
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 3e-07
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPV-GDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
P L + + G+S +CRV V ++ F L +
Sbjct: 2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61
Query: 695 --TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
T + T + C A+ + K
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 4e-07
Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 3/103 (2%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTET--NNFGF 240
+L+ + G+ ECR+ V ++ + F N + +
Sbjct: 3 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
+ + ++C AV L + + K ++
Sbjct: 63 ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEI 105
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 2e-06
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPV-GDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
LQ V GK+ CR+ V +L + FR + L +
Sbjct: 3 RQVILTLQPTL-VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61
Query: 563 AMDL--SHVRAEDEGIYICKATNALGEAVTTASMKIKTKAGLQLET 606
+ R + + C A L ++ K A LE
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLMSR--GGNIFHKHSAPKMLEI 105
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 9e-04
Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 3/91 (3%)
Query: 53 VTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFKNGRPVTIGHRFRPIHDFGYVA-- 109
V + EC++ V +L + F+ + +
Sbjct: 5 VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATAT 64
Query: 110 LDIIDTIPEDSGTYTCRAVNLVGFAEVQATL 140
+ + ++C AV +
Sbjct: 65 FNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 4e-07
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 1/83 (1%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
+ C + P + W+ + + + + + L DSG Y
Sbjct: 16 ANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHY 74
Query: 710 MCKAINRAGEAVSSTSLKVKSKS 732
C N + S K
Sbjct: 75 YCVVRNSSYCLRIKISAKFVENE 97
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Query: 508 KPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLS 567
+ + I + C L P + + W++++ S+ ++ +
Sbjct: 6 REEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV 64
Query: 568 HVRAEDEGIYICKATNALGEAVTTASMKIKTK 599
+ ED G Y C N+ S K
Sbjct: 65 PAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 96
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 327 VAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVALNFKYTYPEDSG 386
+ N+ L P + K +TW ++ S ++ L F EDSG
Sbjct: 14 SSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSG 72
Query: 387 TYTCRAVNELGEAVTSSTLFVESKAS 412
Y C N +
Sbjct: 73 HYYCVVRNSSYCLRIKISAKFVENEP 98
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Query: 196 KEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGV 255
+ C L P +++ + W+ ++ + + L + EDSG
Sbjct: 15 SANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH 73
Query: 256 YTCRAVNALGQAVTSGNLLVHSKKS 280
Y C N+ + +
Sbjct: 74 YYCVVRNSSYCLRIKISAKFVENEP 98
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 5e-07
Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 6/93 (6%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR-----FTETNN 237
++ I G EC + N V W N + E N
Sbjct: 3 VQLYIKRQSEHSILAGDPFELECP-VKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTS 270
F L LP D+G Y C A +
Sbjct: 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESH 94
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 11/94 (11%), Positives = 23/94 (24%), Gaps = 7/94 (7%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR-----ITTKHD 558
++ K ++ G C + V W + + +
Sbjct: 4 QLYIKRQSEH-SILAGDPFELECP-VKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61
Query: 559 FGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ + V D G Y C A + +
Sbjct: 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHS 95
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHVQH--- 689
+ ++ + + S I+ G +C V W +
Sbjct: 2 DVQLYIKRQSEHS-ILAGDPFELECPVK--YCANRPHVTWCKLNGTTCVKLEDRQTSWKE 58
Query: 690 --DFGYVTLDITKCVPADSGVYMCKAINRAGEAVS-STSLKVK 729
+ + L +P D+G Y C A ++ S ST+L V
Sbjct: 59 EKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 5e-04
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPI-----QASNRVSTMHD 369
++ + + + E + ++ VTW + +
Sbjct: 3 VQLYIKRQSEHSILAGDPFELECP-VKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61
Query: 370 FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSST 404
+ L+F+ P D+G+Y C A + + ST
Sbjct: 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHST 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 46.1 bits (108), Expect = 6e-07
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 640 QLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDIT 699
Q ++ G C + V R + L
Sbjct: 7 QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFK 66
Query: 700 KCVPADSGVYMCKAINRAGEAVSST-SLKV 728
+P D GVY C+ N G+ + L V
Sbjct: 67 TTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 43.0 bits (100), Expect = 9e-06
Identities = 24/94 (25%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P + + K+ K G C +V R T N
Sbjct: 5 VPQYVS--KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVT-SGNLLV 275
L LPED GVYTC N +G+ S L V
Sbjct: 63 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRI--TTKHDFGYVAMDLSHVRAED 573
+ G C +P +F+N K + + T + + ED
Sbjct: 15 AKAGDVTMIYCMY--GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPED 72
Query: 574 EGIYICKATNALGEAVTTA 592
EG+Y C+ N +G+ +
Sbjct: 73 EGVYTCEVDNGVGKPQKHS 91
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.0 bits (82), Expect = 0.002
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV--STMHDFGY 372
P + +D+ + + +NG + + + +
Sbjct: 5 VPQYVS--KDMMAKAGDVTMIYCMY--GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG 60
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSS 403
L FK T PED G YTC N +G+ S
Sbjct: 61 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 16/87 (18%), Positives = 22/87 (25%), Gaps = 1/87 (1%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
+ + + E F P L WL N P L
Sbjct: 5 EFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTS 402
T D G Y+C A + + S
Sbjct: 64 YIAKTEASDLGNYSCFATSHIDFITKS 90
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 44.3 bits (103), Expect = 3e-06
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLD 697
F+ +I EG + C P P + + W +N + + L
Sbjct: 6 FSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY 64
Query: 698 ITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSES 738
I K +D G Y C A + S K S ++
Sbjct: 65 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 105
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
F+ ++ + EG F+C P P L W NE P +
Sbjct: 4 QEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTA 592
+ ++ A D G Y C AT+ + +
Sbjct: 63 LYIAKTEASDLGNYSCFATSHIDFITKSV 91
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 40.4 bits (93), Expect = 8e-05
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
+I EG F C P + W N P + + L
Sbjct: 5 EFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTS 270
I + D G Y+C A + + S
Sbjct: 64 YIAKTEASDLGNYSCFATSHIDFITKS 90
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 2e-06
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 15/98 (15%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
Y + + G E C+ G+P + F
Sbjct: 1 YGPRLDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLK-------------DGTFP 45
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKS 730
+ G Y+C+A + GE ++ V S
Sbjct: 46 LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 9e-06
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 17/97 (17%)
Query: 183 APIFTTSL--KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF 240
P N E + C+ + +++ + F
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDG-------------TFPL 46
Query: 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277
+ + + G Y CRA + G+ + V S
Sbjct: 47 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 5e-05
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 315 APVFTQPM--RDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGY 372
P + + EN + G+ ++ L++G T+
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTVTRD-- 57
Query: 373 VALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVES 409
GTY CRA + GE T+ V S
Sbjct: 58 -----------LEGTYLCRARSTQGEVTREVTVNVLS 83
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 6e-05
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 15/81 (18%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
E C+ G+P +++ ++ T EG
Sbjct: 16 WPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTVTRD-------------LEG 60
Query: 576 IYICKATNALGEAVTTASMKI 596
Y+C+A + GE ++ +
Sbjct: 61 TYLCRARSTQGEVTREVTVNV 81
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 649 MEGQSAHYDCRVVPVGDPT------------MRFEWFVNGVELKMG---------SRFHV 687
+ G A CR+ P + T + NG +
Sbjct: 15 LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE 74
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVS 736
G V L I +D G Y C + + + ++ LKV+ ++
Sbjct: 75 SIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN 123
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 21/112 (18%)
Query: 51 YTVTKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFKNGRPVTIGH------------ 97
+ V P A C++ P + + ++V W+++ +
Sbjct: 3 FRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQA 62
Query: 98 --------RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAEVQATLQ 141
+ G VAL I + D G YTC + E L+
Sbjct: 63 PEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 22/102 (21%), Positives = 30/102 (29%), Gaps = 21/102 (20%)
Query: 196 KEGQRAHFECRLIPVSD-NTMKVEWFHNNVPIKSG--------------------SRFTE 234
G A CR+ P + M+V W+ + E
Sbjct: 15 LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE 74
Query: 235 TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
+ G VAL I D G YTC + Q + L V
Sbjct: 75 SIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 22/110 (20%)
Query: 509 PLQNIDAVEEGKNAHFSCRLIPVGDPTL---------------------KVEWFRNEKPL 547
P I A+ G A CR+ P + T + + +
Sbjct: 8 PGHPIRALV-GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYR 66
Query: 548 EDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
+ + G VA+ + +VR DEG Y C + + +K++
Sbjct: 67 GRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (89), Expect = 4e-04
Identities = 23/111 (20%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 319 TQPMRDIHVAENQAAHFEARLIPVGDSKL------------KVTWLRNGVPIQAS----- 361
P I A R+ P ++ V RNG A
Sbjct: 6 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 65
Query: 362 -NRVSTMH---DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
R + G VAL + D G YTC + + + L VE
Sbjct: 66 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 4e-06
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV-------ALDIMQCL 249
G + ++D+ +V W + + R + L I
Sbjct: 9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 68
Query: 250 PEDSGVYTCRAVNALGQAVTSGNLLVH 276
+DSG Y + G + + L +
Sbjct: 69 RDDSGTYNVTVYSTNGTRILNKALDLR 95
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 3e-05
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 518 EGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDL-------SHVR 570
G + + + D +V W R + + R L ++
Sbjct: 9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 68
Query: 571 AEDEGIYICKATNALGEAVTTASMKIK 597
+D G Y + G + ++ ++
Sbjct: 69 RDDSGTYNVTVYSTNGTRILNKALDLR 95
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 7/88 (7%)
Query: 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV-------TLDITKC 701
G + + + D W + R L I
Sbjct: 8 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL 67
Query: 702 VPADSGVYMCKAINRAGEAVSSTSLKVK 729
DSG Y + G + + +L ++
Sbjct: 68 TRDDSGTYNVTVYSTNGTRILNKALDLR 95
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 6e-06
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 6/88 (6%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD------FGYVTLDITK 700
I E C P + +++ + + F +
Sbjct: 15 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 701 CVPADSGVYMCKAINRAGEAVSSTSLKV 728
D+G Y C G + +K+
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKL 102
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVP------IKSGSRFTETN 236
+ +S I E C S ++ ++ + K + + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 237 NFGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
F + ED+G YTC G + + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 5e-04
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHD----- 369
+ ++ + EN +++ + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 370 -FGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
F + FK ED+GTYTC E G + + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.002
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHV------ 569
+ E SC P ++ ++ + + + L
Sbjct: 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75
Query: 570 RAEDEGIYICKATNALGEAVTTASMKI 596
ED G Y C + G + +K+
Sbjct: 76 TREDTGTYTCMVSEEGGNSYGEVKVKL 102
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 8e-06
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P + + V ++ + W+ + A+ S + L
Sbjct: 3 PTLKVQVPNASVDVGDDVLLRCQVEG--RGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
T + TC A N++G A S + V
Sbjct: 61 A-NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-05
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA 563
P + N +V+ G + C++ + W E + + +
Sbjct: 3 PTLKVQVPNA-SVDVGDDVLLRCQVEG--RGLEQAGWILTELEQSATVMKSGGLPSLGLT 59
Query: 564 MDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + + C A N +G A + + +
Sbjct: 60 L-ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-05
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVAL 243
P + N + G C+ + W + + + + L
Sbjct: 3 PTLKVQVPNASVDVGDDVLLRCQ--VEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTSGNLLV 275
+ TC A N +G+A S + V
Sbjct: 61 -ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 4e-05
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 4/93 (4%)
Query: 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVT 695
P + S + G C+V + W + +E +T
Sbjct: 3 PTLKVQVPNAS-VDVGDDVLLRCQVEG--RGLEQAGWILTELEQSATVMKSGGLPSLGLT 59
Query: 696 LDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L + C A N G A S + V
Sbjct: 60 L-ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 6/103 (5%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVG-DSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
+ ++ ++L V LR ++ + + V
Sbjct: 5 ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVT 61
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVESKASLQLDT 417
++CR +L LF + A QL T
Sbjct: 62 TTVLVRRDHHGAQFSCRTELDLRPQ--GLELFENTSAPYQLQT 102
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 2/96 (2%)
Query: 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG 692
Y P +L S G+ C+V G P + + E ++ V
Sbjct: 1 YWTPERVELAPLPSWQPVGKQLTLRCQV-EGGAPRAQLTVVLLRGEKELKREPAVGEP-A 58
Query: 693 YVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
VT + + C+
Sbjct: 59 EVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 7e-05
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 4/101 (3%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
+ G++ C++ + + V +K E V
Sbjct: 5 ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE---VT 61
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVHSKKSIQT 283
++ ++CR L + +QT
Sbjct: 62 TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQT 102
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 516 VEEGKNAHFSCRLIPVG-DPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDE 574
GK C++ L V R EK L+ + + V + R
Sbjct: 16 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHG 72
Query: 575 GIYICKATNALGEAVTTASMKIKTKAGLQLET 606
+ C+ L + T A QL+T
Sbjct: 73 AQFSCRTELDLRPQ--GLELFENTSAPYQLQT 102
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 2e-05
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 7/94 (7%)
Query: 315 APVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVA 374
P + + + V W+ +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPS---RWAGMGRR 61
Query: 375 LNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
L + DSG Y+C + L V+
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRPA---GTVHLLVD 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-05
Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 5/88 (5%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
P + G + +C + V W + +
Sbjct: 6 CPAQEVARGVL-TSLPGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVT 590
L V+ D G Y C V
Sbjct: 64 ---LRSVQLHDSGNYSCYRAGRPAGTVH 88
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 3e-05
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 7/94 (7%)
Query: 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVA 242
P + G C ++ V W S
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR--- 61
Query: 243 LDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
L + DSG Y+C + +LLV
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRPA---GTVHLLVD 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 15/85 (17%), Positives = 20/85 (23%), Gaps = 7/85 (8%)
Query: 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVP 703
G + G S C + W + L +
Sbjct: 14 GVLTSLPGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPSRWA---GMGRRLLLRSVQL 69
Query: 704 ADSGVYMCKAINRAGEAVSSTSLKV 728
DSG Y C AG + L V
Sbjct: 70 HDSGNYSCYR---AGRPAGTVHLLV 91
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.8 bits (94), Expect = 4e-05
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 647 EIMEGQSAHYDCRVVP-VGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV-TLDITKCVPA 704
EI G+S + C+V D + + R V + TL I
Sbjct: 11 EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 70
Query: 705 DSGVYMCKAINRAGEAVSST-SLKV 728
D+G+Y C G +T ++K+
Sbjct: 71 DAGIYKCVVTAEDGTQSEATVNVKI 95
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (83), Expect = 0.001
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 516 VEEGKNAHFSCRLIP-VGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVA-MDLSHVRAED 573
+ G++ F C++ D + EK + RI+ + + + + + +D
Sbjct: 12 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 71
Query: 574 EGIYICKATNALGEAVT-TASMKI 596
GIY C T G T ++KI
Sbjct: 72 AGIYKCVVTAEDGTQSEATVNVKI 95
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.4 bits (80), Expect = 0.004
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 186 FTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVA-L 243
EI G+ F C++ + + + + + R + N + L
Sbjct: 3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 62
Query: 244 DIMQCLPEDSGVYTCRAVNALGQAVTS 270
I +D+G+Y C G +
Sbjct: 63 TIYNANIDDAGIYKCVVTAEDGTQSEA 89
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.8 bits (94), Expect = 5e-05
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 647 EIMEGQSAHYDCRVVPVGDPTMRF------EWFVNGVELKMGSRFHVQHDFGYVTLDITK 700
++ E +S C P + + + ++ + + + F + +
Sbjct: 12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71
Query: 701 CVPADSGVYMCKAINRAGEAVSSTSLKVK 729
D+G Y C G+ S+ +
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKV------EWFHNNVPIKSGSRFTETNN 237
T+ + ++ E + C S ++ + + + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 238 FGFVALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
F + +D+G YTC GQ ++ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (87), Expect = 4e-04
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMH------- 368
D+ V EN++ G S +V W A ++
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCT--YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 369 -DFGYVALNFKYTYPEDSGTYTCRAVNELGEAVTSSTLFVE 408
F + F +D+G YTC E G+ ++ +
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (86), Expect = 6e-04
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKV------EWFRNEKPLEDSSRITTK 556
+ ++ V E ++ +C P ++ + ++ +
Sbjct: 1 KGSVYTAQSDVQ-VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 557 HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597
F + S V +D G Y C + G+ S+ +
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 1e-04
Identities = 15/88 (17%), Positives = 21/88 (23%), Gaps = 5/88 (5%)
Query: 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQC 248
S + K G A +C + G L I
Sbjct: 3 SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKA-----ESPKYGLMGRKNLLIFNL 57
Query: 249 LPEDSGVYTCRAVNALGQAVTSGNLLVH 276
DSGVY C + + + H
Sbjct: 58 SEGDSGVYQCLSEERVKNKTVFQVVAKH 85
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 13/79 (16%), Positives = 18/79 (22%), Gaps = 5/79 (6%)
Query: 650 EGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVY 709
G +A C + + G L I DSGVY
Sbjct: 11 HGGTAELKCSQKSNLARVFWKFQNGV-----LKAESPKYGLMGRKNLLIFNLSEGDSGVY 65
Query: 710 MCKAINRAGEAVSSTSLKV 728
C + R +
Sbjct: 66 QCLSEERVKNKTVFQVVAK 84
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYV 562
+P+ +P + + AV G + +CR + D V+W + + D G
Sbjct: 2 KPLQVEPPEPVVAVALGASRQLTCR-LACADRGASVQWRGLDTS-----LGAVQSDTGRS 55
Query: 563 AMDLSHVRAEDEGIYICKATNALGEAVTTASMKI 596
+ + + G +C + T + +
Sbjct: 56 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.001
Identities = 14/92 (15%), Positives = 22/92 (23%), Gaps = 6/92 (6%)
Query: 316 PVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRVSTMHDFGYVAL 375
P + VA + R + D V W + A + L
Sbjct: 4 LQVEPPEPVVAVALGASRQLTCR-LACADRGASVQWRGLDTSLGAVQSDTGRSV-----L 57
Query: 376 NFKYTYPEDSGTYTCRAVNELGEAVTSSTLFV 407
+ +GT C + L V
Sbjct: 58 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.001
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYV 694
KP+ + + G S CR+ D +W S VQ D G
Sbjct: 2 KPLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGL-----DTSLGAVQSDTGRS 55
Query: 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
L + + +G +C + L V
Sbjct: 56 VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 13/100 (13%)
Query: 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPV----GDPTMRFEWFVNGVELKMGSRFHVQH 689
+ IF Q L C + + + +W+ + L + +
Sbjct: 3 AQAIFKQKLP------VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV 56
Query: 690 DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729
L + G Y C A + ++
Sbjct: 57 KD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 93
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 8e-04
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 516 VEEGKNAHFSCRLIPV----GDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRA 571
+ + C + + K++W+++ KPL + + + + +V
Sbjct: 11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAE 67
Query: 572 EDEGIYICKATNALGEAVTTASMKIK 597
+ G Y C A+ + I+
Sbjct: 68 KHRGNYTCHASYTYLGKQYPITRVIE 93
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 5e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 641 LLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITK 700
L +MEGQ C + ++ +G LK H + IT
Sbjct: 5 LQASAEVVMEGQPLFLRCHG-WRNWDVYKVIYYKDGEALKYWYENH--------NISITN 55
Query: 701 CVPADSGVYMCKAINRAGEAVSST-SLKVK 729
DSG Y C + S ++ V
Sbjct: 56 ATVEDSGTYYCTGKVWQLDYESEPLNITVI 85
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.001
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYV 108
TV K+ + H C + +++V WF+NG+ G D+ +
Sbjct: 8 TVYPAKTQPL---QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ 64
Query: 109 ALDIIDTIPEDSGTYTCR 126
L +++T+P YTC+
Sbjct: 65 TLVMLETVPRSGEVYTCQ 82
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPAD 705
E EG++ C P ++ +F NG K I + +
Sbjct: 10 LEFQEGETIVLRCHS-WKDKPLVKVTFFQNGKSKKFSRSDPNFS--------IPQANHSH 60
Query: 706 SGVYMCKAINRAGEAVSST-SLKVK 729
SG Y C S ++ V+
Sbjct: 61 SGDYHCTGNIGYTLYSSKPVTITVQ 85
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.002
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 516 VEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG 575
+EG+ C P +KV +F+N K + S G
Sbjct: 12 FQEGETIVLRCH-SWKDKPLVKVTFFQNGKSKKFSRSDPNFSI--------PQANHSHSG 62
Query: 576 IYICKATNALGEAVT 590
Y C +
Sbjct: 63 DYHCTGNIGYTLYSS 77
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.0 bits (84), Expect = 0.001
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 12/106 (11%)
Query: 312 VSQAPVFTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASNRV------- 364
+ +P T + E + + +P K +TW + + V
Sbjct: 2 LIASPAKTH---EKTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADVTDFDRRI 57
Query: 365 STMHDFGYVALNFKYTYPEDSGTYTCRAVNELGEA-VTSSTLFVES 409
+ D D Y C A N + V ++
Sbjct: 58 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 103
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.0 bits (84), Expect = 0.002
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVEL-------KMGSRFHV 687
P T T +EG+ DC + P P W R
Sbjct: 5 SPAKTHEKT----PIEGRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITA 59
Query: 688 QHDFGYVTLDITKCVPADSGVYMCKAINRAGEA-VSSTSLKVKS 730
D +TK +D Y+C A N A + V ++K
Sbjct: 60 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 103
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Score = 35.8 bits (82), Expect = 0.002
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYV 108
T++ ++ H C + +KV WF+N + T G D+ +
Sbjct: 6 TISPSRTEA---LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQ 62
Query: 109 ALDIIDTIPEDSGTYTCR 126
L +++ P+ YTC
Sbjct: 63 ILVMLEMTPQRGDVYTCH 80
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.003
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 19/101 (18%)
Query: 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-------- 689
F+Q + G + + + P P W ++ +
Sbjct: 1 FSQQIYG----VVYGNVTFHV---PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRV 53
Query: 690 --DFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTSLKV 728
D +L I +D Y ++ N L V
Sbjct: 54 YLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM--KFFLYV 92
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Score = 35.7 bits (82), Expect = 0.003
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 80 SNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCR 126
+ + W NG+ VT G F D + + + +P Y C+
Sbjct: 34 PVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCK 83
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.7 bits (81), Expect = 0.004
Identities = 8/89 (8%), Positives = 24/89 (26%)
Query: 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQ 247
+ + I + + K ++ ++ ++ I
Sbjct: 28 WVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN 87
Query: 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVH 276
D+G +TC N + + ++
Sbjct: 88 LDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 808 | |||
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.77 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.77 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.75 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.75 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.74 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.71 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.71 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.7 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.7 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.69 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.69 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.67 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.64 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.63 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.63 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.63 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.62 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.62 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.61 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.6 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.6 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.59 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.59 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.59 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.58 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.58 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.58 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.57 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.56 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.56 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.55 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.55 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.55 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.55 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.54 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.54 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.53 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.53 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.53 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.53 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.52 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.52 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.52 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.51 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.51 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.51 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.51 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.51 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.5 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.5 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.5 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.5 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.49 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.48 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.48 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.47 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.47 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.47 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.47 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.47 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.46 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.45 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.45 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.45 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.45 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.43 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.43 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.43 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.43 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.43 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.43 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.43 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.42 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.42 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.41 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.4 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.39 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.39 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.38 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.38 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.37 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.37 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.37 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.37 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.36 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.35 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.34 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.34 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.33 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.33 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.33 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.33 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.32 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.32 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.32 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.31 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.3 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.27 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.25 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.25 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.24 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.23 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.23 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.23 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.23 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.21 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.21 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.2 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.17 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.14 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.12 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.12 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.05 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.99 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.99 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.99 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.92 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.87 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.86 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.76 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.6 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.58 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.54 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.5 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.5 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.5 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.49 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.46 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.45 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.45 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.43 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.42 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.42 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.42 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.42 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.41 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.41 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.4 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.4 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.4 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.39 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.38 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.38 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.38 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.38 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.38 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.38 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.36 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.36 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.36 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.36 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.35 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.35 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.33 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.32 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.31 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.31 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.31 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.31 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.3 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.3 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.29 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.28 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.28 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.28 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.28 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.27 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.27 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.25 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.24 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.23 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.23 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.22 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.22 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.22 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.22 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.22 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.21 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.2 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.2 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.19 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.18 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.18 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.18 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.18 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.17 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.17 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.17 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.15 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.15 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.15 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.13 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.13 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.12 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.11 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.1 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.1 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.1 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.09 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.09 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.09 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.09 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.08 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.08 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.08 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.07 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.07 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.07 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.06 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.06 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.06 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.06 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.05 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.05 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.05 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.03 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.03 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.01 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.01 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.01 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.01 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.01 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.01 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.0 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.0 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.0 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.99 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.98 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.98 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.98 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.97 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.96 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.96 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.96 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.95 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.95 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.95 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.95 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.95 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.94 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.94 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.94 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.93 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.93 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.92 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.92 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.92 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.91 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.91 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.9 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.9 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.9 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.9 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.89 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.89 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.89 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.89 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.88 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.88 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.88 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.86 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.86 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.86 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.86 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.85 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.85 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.84 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.84 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.84 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.84 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.83 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.83 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.83 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.83 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.82 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.8 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.8 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.79 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.79 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.79 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.78 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.78 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.78 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.77 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.76 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.76 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.75 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.75 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.73 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.73 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.73 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.71 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.71 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.71 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.71 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.7 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.7 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.7 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.69 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.69 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.68 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.68 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.68 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.67 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.66 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.65 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.65 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.65 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.64 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.64 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.64 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.64 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.63 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.62 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.62 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.61 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.61 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.6 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.6 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.6 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.59 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.59 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.58 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.58 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.58 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.57 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.57 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.57 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.57 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.57 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.56 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.56 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.55 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.55 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.54 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.54 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.54 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.53 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.53 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.53 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.52 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.52 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.52 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.52 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.52 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.51 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.51 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.51 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.5 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.5 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.5 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.49 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.49 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.48 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.47 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.47 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.47 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.46 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.46 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.46 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.45 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.45 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.45 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.45 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.45 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.44 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.44 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.44 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.44 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.43 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.43 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.41 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.4 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.4 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.4 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.4 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.4 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.4 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.39 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.39 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.39 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.38 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.38 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.38 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.37 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.37 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.37 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.36 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.35 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.35 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.35 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.34 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.34 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.34 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.32 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.32 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.32 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 97.31 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.3 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.29 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.29 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.29 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.28 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.28 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.28 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.28 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.27 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.27 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.26 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.26 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.25 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.25 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.25 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.25 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.25 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.24 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.24 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.24 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.23 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.23 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.22 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.21 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.19 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.18 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.18 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.17 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.17 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.17 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.16 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.16 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.15 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.14 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.14 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.14 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 97.14 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.14 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.14 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 97.13 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.11 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.1 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.1 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.09 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.09 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.06 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.06 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.06 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.05 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.03 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.02 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.02 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.01 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.01 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.01 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.0 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.0 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 96.98 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 96.98 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.98 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.96 |
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.77 E-value=8.6e-19 Score=146.31 Aligned_cols=95 Identities=34% Similarity=0.483 Sum_probs=85.9
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHV-QHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
++|.|...+.+ ..+.+|+.+.|.|.+ .|+|.|.|.|||||.+|..+.++.+ ..+++.++|.|.++..+|+|.|+|.
T Consensus 3 eaP~f~~~~~~-~~v~~g~~v~l~c~v--~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~ 79 (98)
T d1g1ca_ 3 EAPKIFERIQS-QTVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 79 (98)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred cCCeEecCCCc-EEEcCCCcEEEEEEE--EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence 46899888865 689999999999999 7999999999999999998877654 4567889999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeC
Q psy2145 713 AINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~ 731 (808)
|+|.+|.+++++.|.|+.+
T Consensus 80 a~N~~G~~~~~~~L~V~~k 98 (98)
T d1g1ca_ 80 AINIAGETSSHAFLLVQAK 98 (98)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEECCcEEEEEEEEEEEEC
Confidence 9999999999999999864
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.77 E-value=4.2e-19 Score=147.95 Aligned_cols=95 Identities=28% Similarity=0.405 Sum_probs=88.1
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|+..+.+ ..+.+|+.+.|.|.+ .|.|.|.|.|+|||+.|..+.++.+..+++.++|.|.++..+|+|.|+|.|+
T Consensus 1 ~P~f~~~p~~-~~v~~G~~~~l~C~~--~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 77 (97)
T d1koaa1 1 QPRFIVKPYG-TEVGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77 (97)
T ss_dssp SCEEEECCCC-CEEETTSCEEEEEEE--ECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred CCEEEEeCCC-EEEeCCCcEEEEEEE--EEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence 4889888775 578999999999999 7999999999999999999999998888899999999999999999999999
Q ss_pred eCCcceEEEEEEEEEeCC
Q psy2145 715 NRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~~p 732 (808)
|.+|.++.++.|.|...+
T Consensus 78 N~~G~~~~~~~l~V~~~~ 95 (97)
T d1koaa1 78 NSYGTKEEIVFLNVTRHS 95 (97)
T ss_dssp ETTEEEEEEECCEEECSC
T ss_pred ECCCEEEEEEEEEEeecC
Confidence 999999999999998654
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.9e-18 Score=144.95 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=86.7
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|.|...+. ...+.+|+.+.|.|.+ .|.|.|.|.|+|||+.|..++++++....+.++|.|.++..+|+|.|+|.|+|
T Consensus 1 P~~~~~p~-~~~v~~G~~~~l~C~v--~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 77 (101)
T d2cqva1 1 PQIIQFPE-DQKVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 77 (101)
T ss_dssp CEESCCCC-SEEEETTCCEEEEEEE--ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CeEEeeCC-cEEEeCCCcEEEEEEE--EecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence 44554433 3678999999999999 79999999999999999999999998888889999999999999999999999
Q ss_pred CCcceEEEEEEEEEeCCCc
Q psy2145 716 RAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 716 ~~G~~~~s~~l~V~~~p~~ 734 (808)
.+|.++.++.|.|.++|..
T Consensus 78 ~~G~~~~~~~l~V~~~P~p 96 (101)
T d2cqva1 78 KLGSRQAQVNLTVVDKPDP 96 (101)
T ss_dssp SSCEEECCEEEEEECSCSC
T ss_pred CCCEEEEEEEEEEEecCCC
Confidence 9999999999999998764
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.75 E-value=1.2e-18 Score=141.94 Aligned_cols=89 Identities=30% Similarity=0.548 Sum_probs=80.8
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|+..+.+ ..+.+|+++.|.|.+ .|.|.|.|+|+|||++|..+.++.+. .+ .|.|.++..+|+|.|+|.|.
T Consensus 1 kP~f~~~~~~-~~v~~G~~~~l~C~~--~g~P~p~v~W~k~g~~i~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~ 73 (89)
T d1cs6a4 1 QPDWLDVITD-TEADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKLVLEDSGMYQCVAE 73 (89)
T ss_dssp EEEEEECCCC-EEEETTCCEEEECEE--EEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEECCC-EEECCCCcEEEEEEE--EEEcCCEEEEEEeeccccccceeeee--ee--eEEEEeecccCCEEEEEEEE
Confidence 3888888876 678999999999999 79999999999999999999888774 33 79999999999999999999
Q ss_pred eCCcceEEEEEEEEEe
Q psy2145 715 NRAGEAVSSTSLKVKS 730 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~ 730 (808)
|.+|.+++++.|.|++
T Consensus 74 N~~G~~~~~~~l~V~A 89 (89)
T d1cs6a4 74 NKHGTVYASAELTVQA 89 (89)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCEEEEEEEEEEEC
Confidence 9999999999999974
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.75 E-value=3.7e-18 Score=143.59 Aligned_cols=94 Identities=34% Similarity=0.638 Sum_probs=85.8
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.+|.|...+.+ ..+.+|+.+.|.|.+ .|+|.|.|.|+|||++|..+.++.+..+ .+.++|.|.++..+|+|.|+|.
T Consensus 7 ~~P~f~~~~~~-~~v~~G~~~~l~C~~--~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 83 (102)
T d1fhga_ 7 VKPYFTKTILD-MEVVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 83 (102)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE--EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEcCCCc-EEEecCCcEEEEEEE--EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEE
Confidence 46889888775 678999999999999 7999999999999999999999988664 5688999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEe
Q psy2145 713 AINRAGEAVSSTSLKVKS 730 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~ 730 (808)
|+|.+|.+++++.|.|+.
T Consensus 84 a~N~~G~~~~~~~L~V~s 101 (102)
T d1fhga_ 84 AVNSLGEATCTAELLVET 101 (102)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCcEEEEEEEEEEEE
Confidence 999999999999999974
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.74 E-value=1.9e-18 Score=142.54 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=85.3
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+. ...+.+|++++|.|.+ .|+|.|.|.|+|||..|..+.++.+...++.++|.|.++..+|+|.|+|.|+
T Consensus 2 ~P~i~~~~~-~~~v~~G~~~~l~c~~--~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 78 (93)
T d1wiua_ 2 KPKILTASR-KIKIKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCC-EEEECSSBCCEEEEEE--ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred CCeEEeCCC-cEEEeCCCeEEEEEEE--EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence 577777665 4679999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceEEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKVK 729 (808)
Q Consensus 715 N~~G~~~~s~~l~V~ 729 (808)
|.+|+++.++.|.|+
T Consensus 79 N~~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 79 NELGEDEAIFEVIVQ 93 (93)
T ss_dssp ETTEEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEC
Confidence 999999999999884
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.71 E-value=2.3e-17 Score=137.46 Aligned_cols=94 Identities=29% Similarity=0.474 Sum_probs=85.5
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEE-EeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITT-KHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
++|.|+.++.+. .+.+|+.+.|.|.+ .|.|.|.|+|+|||.+|..+.++.. ..+++.++|.|.++..+|+|.|+|.
T Consensus 3 eaP~f~~~~~~~-~v~~g~~v~l~c~v--~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~ 79 (98)
T d1g1ca_ 3 EAPKIFERIQSQ-TVGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 79 (98)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred cCCeEecCCCcE-EEcCCCcEEEEEEE--EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence 579999999887 68999999999999 7999999999999999998877554 4567788999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEEe
Q psy2145 581 ATNALGEAVTTASMKIKT 598 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V~~ 598 (808)
|.|..|..++++.|.|+.
T Consensus 80 a~N~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 80 AINIAGETSSHAFLLVQA 97 (98)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCcEEEEEEEEEEEE
Confidence 999999999999999975
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.71 E-value=1.4e-17 Score=138.61 Aligned_cols=94 Identities=21% Similarity=0.467 Sum_probs=87.5
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
.|.|+.++.+. .+.+|+++.|.|.+ .|.|.|.|+|+|||+.|..+.++.+..+++.+.|.|.++..+|+|.|+|.|.
T Consensus 1 ~P~f~~~p~~~-~v~~G~~~~l~C~~--~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 77 (97)
T d1koaa1 1 QPRFIVKPYGT-EVGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77 (97)
T ss_dssp SCEEEECCCCC-EEETTSCEEEEEEE--ECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred CCEEEEeCCCE-EEeCCCcEEEEEEE--EEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence 48899998887 68999999999999 7999999999999999999888888888888899999999999999999999
Q ss_pred eCCeeEEEEEEEEEEec
Q psy2145 583 NALGEAVTTASMKIKTK 599 (808)
Q Consensus 583 N~~G~~~~s~~l~V~~~ 599 (808)
|..|..++++.|.|...
T Consensus 78 N~~G~~~~~~~l~V~~~ 94 (97)
T d1koaa1 78 NSYGTKEEIVFLNVTRH 94 (97)
T ss_dssp ETTEEEEEEECCEEECS
T ss_pred ECCCEEEEEEEEEEeec
Confidence 99999999999999864
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.70 E-value=1.2e-17 Score=136.15 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=76.4
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.....+.+|+.+.|.|.+ .|.|.|.|.|+|||.+|.. +++.+.. + .|.|.++..+|+|.|+|.|.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~--~g~P~p~v~W~~~~~~i~~-~~~~~~~--~--~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSG-GRATVTD--S--GLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEE--EEESCCCCEEEETTEECCS-SSEEEET--T--EEEESSCCSTTCEEEEEEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEE--EEeCCCEEEEEeCCccCcc-ccEEEee--e--eEEECCCChhhCEEEEEEEE
Confidence 37888877766678999999999999 7999999999999999964 4665543 2 69999999999999999999
Q ss_pred eCCcceEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKV 728 (808)
Q Consensus 715 N~~G~~~~s~~l~V 728 (808)
|.+|.++.++.|.|
T Consensus 75 N~~G~~~~~~~l~V 88 (89)
T d1biha4 75 NEHGDKYFETLVQV 88 (89)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEE
Confidence 99999999999987
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.70 E-value=3e-17 Score=135.31 Aligned_cols=92 Identities=15% Similarity=0.302 Sum_probs=86.4
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
+|.|+.++.++ .+.+|+++.|.|.+ .|.|.|.+.|+|||..+..+.++.....++..+|.|.++..+|+|.|+|.|.
T Consensus 2 ~P~i~~~~~~~-~v~~G~~~~l~c~~--~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 78 (93)
T d1wiua_ 2 KPKILTASRKI-KIKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCCEE-EECSSBCCEEEEEE--ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred CCeEEeCCCcE-EEeCCCeEEEEEEE--EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence 78999999887 69999999999999 8999999999999999999999888888888899999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|+.++++.|.|+
T Consensus 79 N~~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 79 NELGEDEAIFEVIVQ 93 (93)
T ss_dssp ETTEEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEC
Confidence 999999999999884
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.1e-17 Score=135.63 Aligned_cols=95 Identities=16% Similarity=0.325 Sum_probs=87.2
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.|+..+.+. .+.+|+.+.|.|.+ .|.|.+.|+|+|||+.|..+.++.+....+.++|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~p~~~-~v~~G~~~~l~C~v--~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 77 (101)
T d2cqva1 1 PQIIQFPEDQ-KVRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 77 (101)
T ss_dssp CEESCCCCSE-EEETTCCEEEEEEE--ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CeEEeeCCcE-EEeCCCcEEEEEEE--EecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence 6677777776 68999999999999 79999999999999999999999988888888999999999999999999999
Q ss_pred CCeeEEEEEEEEEEeccc
Q psy2145 584 ALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 584 ~~G~~~~s~~l~V~~~~~ 601 (808)
..|..++++.|.|...|.
T Consensus 78 ~~G~~~~~~~l~V~~~P~ 95 (101)
T d2cqva1 78 KLGSRQAQVNLTVVDKPD 95 (101)
T ss_dssp SSCEEECCEEEEEECSCS
T ss_pred CCCEEEEEEEEEEEecCC
Confidence 999999999999998654
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.69 E-value=7.6e-17 Score=135.40 Aligned_cols=95 Identities=35% Similarity=0.703 Sum_probs=86.2
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-eCcEEEEEECCCCCCCCEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
..+|.|...+.+. .+.+|+++.|.|.+ .|.|.|.|.|+|||.+|..+.++.+.. ..+.++|.|.++..+|+|.|+|
T Consensus 6 ~~~P~f~~~~~~~-~v~~G~~~~l~C~~--~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 82 (102)
T d1fhga_ 6 HVKPYFTKTILDM-EVVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 82 (102)
T ss_dssp CEEEEEEECCCCE-EEETTSCEEEEEEE--EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred CCCCeEEcCCCcE-EEecCCcEEEEEEE--EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEE
Confidence 3579999999987 68999999999999 799999999999999999998888765 4457789999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEe
Q psy2145 580 KATNALGEAVTTASMKIKT 598 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~ 598 (808)
.|.|..|..++++.|.|+.
T Consensus 83 ~a~N~~G~~~~~~~L~V~s 101 (102)
T d1fhga_ 83 KAVNSLGEATCTAELLVET 101 (102)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCcEEEEEEEEEEEE
Confidence 9999999999999999874
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.69 E-value=4.3e-17 Score=132.66 Aligned_cols=87 Identities=28% Similarity=0.609 Sum_probs=80.3
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEe
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATN 583 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 583 (808)
|.|+..+.+. .+.+|+++.|.|.+ .|.|.|.|+|+|||.+|..+.++.+.. + .|.|.++..+|+|.|+|.|.|
T Consensus 2 P~f~~~~~~~-~v~~G~~~~l~C~~--~g~P~p~v~W~k~g~~i~~~~~~~~~~--~--~L~i~~v~~~D~G~Y~C~a~N 74 (89)
T d1cs6a4 2 PDWLDVITDT-EADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVSG--G--ELRFSKLVLEDSGMYQCVAEN 74 (89)
T ss_dssp EEEEECCCCE-EEETTCCEEEECEE--EEESCCEEEEEETTEECCCCSSEEEET--T--EEEESSCCGGGCEEEEEEEEE
T ss_pred CCeEEECCCE-EECCCCcEEEEEEE--EEEcCCEEEEEEeeccccccceeeeee--e--eEEEEeecccCCEEEEEEEEe
Confidence 8899999987 68999999999999 799999999999999999988877643 3 799999999999999999999
Q ss_pred CCeeEEEEEEEEEE
Q psy2145 584 ALGEAVTTASMKIK 597 (808)
Q Consensus 584 ~~G~~~~s~~l~V~ 597 (808)
..|...+++.|.|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (89)
T d1cs6a4 75 KHGTVYASAELTVQ 88 (89)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 99999999999986
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.67 E-value=9.6e-18 Score=137.57 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=78.0
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
..+.+|+++.|.|.+ .|+|.|.|.|++||.+|..+.++.+......++|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 9 ~~v~~G~~~~l~C~~--~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 86 (91)
T d1tnna_ 9 MTVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT 86 (91)
T ss_dssp EECSSSSCCCEEEEC--CCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEE
T ss_pred EEEeCCCcEEEEEEE--EEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEE
Confidence 578999999999999 899999999999999999999999988888999999999999999999999999999999999
Q ss_pred EEEE
Q psy2145 726 LKVK 729 (808)
Q Consensus 726 l~V~ 729 (808)
|.|+
T Consensus 87 l~V~ 90 (91)
T d1tnna_ 87 LTIQ 90 (91)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9885
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.64 E-value=3.3e-16 Score=127.41 Aligned_cols=87 Identities=26% Similarity=0.565 Sum_probs=76.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
+|.|...+.....+.+|+.+.|.|.+ .|.|.|.|+|+|||.+|..+ ++.+..+ .|.|.++..+|+|.|+|.|.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~--~g~P~p~v~W~~~~~~i~~~-~~~~~~~----~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGG-RATVTDS----GLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEE--EEESCCCCEEEETTEECCSS-SEEEETT----EEEESSCCSTTCEEEEEEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEE--EEeCCCEEEEEeCCccCccc-cEEEeee----eEEECCCChhhCEEEEEEEE
Confidence 58888877776678999999999999 79999999999999999654 5554432 59999999999999999999
Q ss_pred eCCeeEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKI 596 (808)
Q Consensus 583 N~~G~~~~s~~l~V 596 (808)
|..|....++.|.|
T Consensus 75 N~~G~~~~~~~l~V 88 (89)
T d1biha4 75 NEHGDKYFETLVQV 88 (89)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEE
Confidence 99999999998887
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=2.5e-16 Score=131.70 Aligned_cols=94 Identities=26% Similarity=0.292 Sum_probs=74.7
Q ss_pred CeEEeecCC-CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE--EEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 636 PIFTQLLTG-TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF--HVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 636 P~~~~~~~~-~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
|.|...... ..++..|+++.|.|.+ .|.|.|.|.|++||..|...... ......+.++|.|.++..+|+|.|+|.
T Consensus 4 P~i~~~~~~~~~t~~~G~~v~l~C~~--~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (100)
T d1qz1a3 4 PTVQARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI 81 (100)
T ss_dssp EEEEESCSEEEEETTSCCCEEEEEEE--EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred CEEEeCCCceeEEEcCCCCEEEEEEE--EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence 455433322 2357889999999999 79999999999999999765332 223344556999999999999999999
Q ss_pred EEeCCcceEEEEEEEEEeC
Q psy2145 713 AINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V~~~ 731 (808)
|+|.+|.++.++.|.|..+
T Consensus 82 a~N~~G~~~~~~~l~V~~K 100 (100)
T d1qz1a3 82 AENKAGEQDASIHLKVFAK 100 (100)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEECCCEEEEEEEEEEEEC
Confidence 9999999999999999764
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.1e-16 Score=130.10 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=78.9
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-----CCEEEEEEccCCCCCcEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-----FGYVTLDITKCVPADSGV 708 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~ 708 (808)
.+|.|.... ....+....|.|.+ .|+|.|+|.|+|||++|..+.++.+... ...+.|.|.+++.+|+|.
T Consensus 3 ~pP~it~~~----~~~~~~~~~i~~~v--~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (103)
T d1wwbx_ 3 FAPTITFLE----SPTSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD 76 (103)
T ss_dssp CCCCCCCCC----CCCCCCEEEEEEEE--ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred cCCeeEEcC----CCccceeEEEEEEE--EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence 356654432 23467888999999 7999999999999999998877765432 124689999999999999
Q ss_pred EEEEEEeCCcceEEEEEEEEEeCCCc
Q psy2145 709 YMCKAINRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 709 Y~C~A~N~~G~~~~s~~l~V~~~p~~ 734 (808)
|+|.|+|.+|+++.++.|.|.++|++
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~~~P~i 102 (103)
T d1wwbx_ 77 YTLIAKNEYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred EEEEEeccCCEEEEEEEEEEEeCCCC
Confidence 99999999999999999999999876
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.63 E-value=1.3e-16 Score=130.69 Aligned_cols=89 Identities=28% Similarity=0.458 Sum_probs=80.6
Q ss_pred eeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCC
Q psy2145 506 FTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNAL 585 (808)
Q Consensus 506 f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 585 (808)
|+.++.++ .+.+|+++.|.|.+ .|.|.|.|.|+|||.+|..+.++.+.......+|.|.++..+|+|.|+|.|.|..
T Consensus 2 ii~~P~~~-~v~~G~~~~l~C~~--~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 78 (91)
T d1tnna_ 2 ILTKPRSM-TVYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 78 (91)
T ss_dssp CSBCCCCE-ECSSSSCCCEEEEC--CCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSS
T ss_pred EEeCCcCE-EEeCCCcEEEEEEE--EEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECC
Confidence 44555555 68999999999999 8999999999999999999888888888888899999999999999999999999
Q ss_pred eeEEEEEEEEEE
Q psy2145 586 GEAVTTASMKIK 597 (808)
Q Consensus 586 G~~~~s~~l~V~ 597 (808)
|..+.++.|.|+
T Consensus 79 G~~~~~~~l~V~ 90 (91)
T d1tnna_ 79 GKQEAEFTLTIQ 90 (91)
T ss_dssp CBCCEEEEEECC
T ss_pred CEEEEEEEEEEE
Confidence 999999998875
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.62 E-value=1e-16 Score=133.03 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=69.6
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE-EEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH-VQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.+.+|+++.|.|.+ .|+|.|.|.|+|||++|..+.++. .....+.++|.|.++..+|+|.|+|.|+|.+|.++.++.
T Consensus 16 ~v~~G~~v~l~C~~--~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 16 AVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EECTTCCEEEECCE--EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEEE--eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 47789999999999 799999999999999998765442 233344458999999999999999999999999999999
Q ss_pred EEE
Q psy2145 726 LKV 728 (808)
Q Consensus 726 l~V 728 (808)
|.|
T Consensus 94 l~V 96 (97)
T d3dara1 94 LDV 96 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.62 E-value=2.8e-16 Score=128.58 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=72.5
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|....+....+.+|+.++|.|.+ .|+|.|.|.|+|++..+.... ..++ .+|.|.++..+|+|.|+|.|+
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~--~g~P~p~i~W~k~~~~~~~~~----~~~~--~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFA--FGNPVPQIKWRKLDGSQTSKW----LSSE--PLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEE--EEESCCEEEEEECCSCCSCCC----SBSS--SEEEECSCCGGGCEEEEEEEE
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEE--EEccCCEEEEEecccccceEe----eeee--eEEEeCCCCccCCEEEEEEEE
Confidence 47777666666789999999999999 799999999999775443221 1122 379999999999999999999
Q ss_pred eCCcceEEEEEEEEEe
Q psy2145 715 NRAGEAVSSTSLKVKS 730 (808)
Q Consensus 715 N~~G~~~~s~~l~V~~ 730 (808)
|.+|.++.++.|.|.+
T Consensus 76 N~~G~~~~~~~l~V~A 91 (91)
T d1cs6a3 76 NIKGRDTYQGRIIIHA 91 (91)
T ss_dssp ETTEEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEEEC
Confidence 9999999999999863
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.6e-15 Score=127.90 Aligned_cols=97 Identities=22% Similarity=0.191 Sum_probs=77.2
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE--eC--CEEEEEEccCCCCCcEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH--DF--GYVTLDITKCVPADSGV 708 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~ 708 (808)
+.+|.|..... ...+....|.|.+ .|+|.|.|.|+|||++|..+.++.+.. +. ..+.|.|.++..+|+|.
T Consensus 3 ~~PP~i~~~~~----~~~~~~~~i~~~v--~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (105)
T d1wwca_ 3 YYPPRVVSLEE----PELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN 76 (105)
T ss_dssp CCCCCCCCCCC----CCCCCEEEEEEEE--ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred EcCCeeEEeCC----CEEEEEEEEEEEE--EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceE
Confidence 34566654321 2345566788899 799999999999999999888776533 22 24679999999999999
Q ss_pred EEEEEEeCCcceEEEEEEEEEeCCCcc
Q psy2145 709 YMCKAINRAGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 709 Y~C~A~N~~G~~~~s~~l~V~~~p~~~ 735 (808)
|+|.|+|.+|.+++++.|.|..+|...
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~~~P~P~ 103 (105)
T d1wwca_ 77 YTLIAKNPLGTANQTINGHFLKEPFPV 103 (105)
T ss_dssp EEEEEEETTEEEEEEEEECCSCCCCCS
T ss_pred EEEEEEcCCCEEEEEEEEEEEeCCCCC
Confidence 999999999999999999999888654
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1e-15 Score=122.93 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=66.9
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
...+.+|++++|.|.+ .|.|.|.|.|++++..+..+ +. .|.|.++..+|+|.|+|.|+|..|..+.++
T Consensus 8 ~~~v~~G~~~~L~C~~--~g~p~P~i~W~~~~~~~~~~--------~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~ 75 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLES--PPGSSPSVQCRSPRGKNIQG--------GK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKI 75 (84)
T ss_dssp SSCEETTCCEEEEEEC--CTTCCCEEEEECTTCCEEEE--------SS--EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CeEEECCCeEEEEEEe--EcCCchheEEEeecccceee--------ee--eeeeeecccccccEEEEEEEeCCCEEEEEE
Confidence 4568999999999999 89999999999987655432 22 799999999999999999999999999999
Q ss_pred EEEEEeCC
Q psy2145 725 SLKVKSKS 732 (808)
Q Consensus 725 ~l~V~~~p 732 (808)
.|.|.+.|
T Consensus 76 ~v~V~~~~ 83 (84)
T d2nxyb2 76 DIVVLAFQ 83 (84)
T ss_dssp EECEECCC
T ss_pred EEEEEecC
Confidence 99998765
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.1e-15 Score=125.07 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=76.0
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.|...+.+ ..+.+|+.+.|.|.+ .|.|.|.|.|+|||..+..+.+..+....+ .+|.|.++..+|+|.|+|.|.
T Consensus 1 k~~F~~~P~~-~~v~~G~~~~l~C~v--~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~ 76 (92)
T d1epfa2 1 KLMFKNAPTP-QEFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGR 76 (92)
T ss_dssp CSEEEECCSS-EECCTTSCEEECCEE--ECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEE
T ss_pred CcEEEEcCCC-EEEeCCCcEEEEEEE--eecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEE
Confidence 3667766654 689999999999999 799999999999999998876654444332 369999999999999999999
Q ss_pred eCCcceEEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKVK 729 (808)
Q Consensus 715 N~~G~~~~s~~l~V~ 729 (808)
|..|.......|.|.
T Consensus 77 n~~~~~~~~~~i~Vi 91 (92)
T d1epfa2 77 ILARGEINFKDIQVI 91 (92)
T ss_dssp EGGGTEEEEEEEEEE
T ss_pred ECcCCEEEEEEEEEE
Confidence 999988888887774
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.9e-15 Score=122.58 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=74.1
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.++..+.....+.+|+++.|.|.+. .|.|.|.|+|++++.++.. .....+.++|+|.+++.+|+|.|+|+|+
T Consensus 2 kP~~i~~p~~~~~~~~G~~~~l~C~~~-~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~As 75 (90)
T d1gsma1 2 KPLQVEPPEPVVAVALGASRQLTCRLA-CADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGS 75 (90)
T ss_dssp CSEEEESCCSEEEEETTCCEEEEEEEC-CSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCcEEeCCCCeEEEEeCCcEEEEEEec-CCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEE
Confidence 466666666656788999999999984 4899999999998876632 2334567799999999999999999999
Q ss_pred eCCcceEEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKVK 729 (808)
Q Consensus 715 N~~G~~~~s~~l~V~ 729 (808)
|..|..+.++.|.|.
T Consensus 76 n~~g~~~~s~~l~Vy 90 (90)
T d1gsma1 76 CGGRTFQHTVQLLVY 90 (90)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEEC
Confidence 999999999999883
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-15 Score=125.73 Aligned_cols=88 Identities=26% Similarity=0.426 Sum_probs=76.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
+|.|...+.....+.+|+.+.|.|.+ +.|+|.|.|||||+.|..+ .++.+..+++.++|.|.++..+|+|.|+|.|
T Consensus 5 ~~~f~~~l~~~~~v~~G~~v~l~c~v---~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a 81 (94)
T d1pd6a_ 5 STAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 81 (94)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEEC---SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred CCcEEEeCCCCEEECcCCeEEEEEEE---CCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEE
Confidence 58888888766679999999999998 4589999999999999865 5788888899999999999999999999998
Q ss_pred EeCCcceEEEEEEEEE
Q psy2145 714 INRAGEAVSSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~ 729 (808)
.| ..+++.|.|+
T Consensus 82 ~n----~~~s~~l~V~ 93 (94)
T d1pd6a_ 82 GG----EKCSTELFVK 93 (94)
T ss_dssp TT----EEECCEEEEE
T ss_pred ee----EEEEEEEEEE
Confidence 66 4677888886
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.59 E-value=1.5e-15 Score=129.51 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=72.1
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC----CCcE--E-------EEEeCCEEEEEEcc
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM----GSRF--H-------VQHDFGYVTLDITK 700 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~----~~~~--~-------~~~~~~~~~L~I~~ 700 (808)
.+|.|...++...++.+|+++.|.|.+ .|+|.|.|.|+|++..... .+.. . ...+.+.+.|.|.+
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 80 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEE--ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECS
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEE--EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECC
Confidence 468888776666889999999999999 7999999999997754321 1111 1 11122357899999
Q ss_pred CCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2145 701 CVPADSGVYMCKAINRAGEAVSSTSLKV 728 (808)
Q Consensus 701 v~~~D~G~Y~C~A~N~~G~~~~s~~l~V 728 (808)
+..+|+|.|+|.|+|.+|.+.+++.|.|
T Consensus 81 ~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 81 VTFEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 9999999999999999999999999988
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1.8e-15 Score=123.44 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=68.7
Q ss_pred CCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
+....+.+|+++.|.|.+. .|.|.|.|.|+|+|..+..+... ..++ +|+|.++..+|+|.|+|.|+|.+|.++.
T Consensus 9 p~~~~v~~G~~~~l~C~~~-~~~p~~~v~W~k~~~~~~~~~~~---~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 82 (89)
T d1gl4b_ 9 QRSQSVRPGADVTFICTAK-SKSPAYTLVWTRLHNGKLPSRAM---DFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQG 82 (89)
T ss_dssp CCEEEECTTCCEEEEEEEE-ESSSCCEEEEEEGGGBCCCTTEE---EETT--EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred CCeEEEeCCCcEEEEEEcc-CCCCCCEEEEecCCceeeccccE---eece--EEEEecCCcccCEEEEEEEEECCCEEEE
Confidence 3345789999999999994 37899999999999988766432 2233 7999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2145 723 STSLKVK 729 (808)
Q Consensus 723 s~~l~V~ 729 (808)
++.|.|+
T Consensus 83 ~~~l~V~ 89 (89)
T d1gl4b_ 83 TATLHVQ 89 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999884
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.9e-15 Score=124.07 Aligned_cols=92 Identities=25% Similarity=0.437 Sum_probs=76.3
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEc----c--CCCcEEEEEeCCEEEEEEccCC-CCCc
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVEL----K--MGSRFHVQHDFGYVTLDITKCV-PADS 706 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l----~--~~~~~~~~~~~~~~~L~I~~v~-~~D~ 706 (808)
+|.|...+. ...+.+|+.+.|.|.+ .|.|.| .|.|+|++..+ . .+.++.+..+...++|.|.++. ..|+
T Consensus 2 PP~i~~~~~-~~~v~~G~~v~l~C~v--~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~ 78 (101)
T d3b5ha1 2 PPRVKAVKS-SEHINEGETAMLVCKS--ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 78 (101)
T ss_dssp SCCCEESCS-EEEECTTSCEEEEEEC--CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred CceEEEcCC-cEEECcCCeEEEEEEE--EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC
Confidence 366665443 4678999999999999 799987 79999976332 2 2457888888899999999998 5799
Q ss_pred EEEEEEEEeCCcceEEEEEEEEE
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
|.|+|.|+|.+|.++.++.|.|+
T Consensus 79 G~Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 79 GQYRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCEEEEEEEEEEC
Confidence 99999999999999999999984
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.8e-15 Score=123.87 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=72.5
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCC--EEEEEEccCCCCCcEEEEEEEEeCCcce-EE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFG--YVTLDITKCVPADSGVYMCKAINRAGEA-VS 722 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~ 722 (808)
..+.+|+.+.|.|.+ .|.|.|.|.|+|||.+|..+.++.+..... .+.|.|.++..+|+|.|+|.|+|.+|.. +.
T Consensus 6 ~~v~~G~~~~l~C~v--~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~ 83 (91)
T d1rhfa1 6 LTVSQGQPVKLNCSV--EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ 83 (91)
T ss_dssp EEEETTCCEEEEEEE--ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred EEEcCCCeEEEEEEE--EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEE
Confidence 468899999999999 799999999999999999887776655443 4689999999999999999999999986 45
Q ss_pred EEEEEEEe
Q psy2145 723 STSLKVKS 730 (808)
Q Consensus 723 s~~l~V~~ 730 (808)
.+.|.|++
T Consensus 84 ~~~l~V~G 91 (91)
T d1rhfa1 84 PVWLTVEG 91 (91)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEEC
Confidence 78999874
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.7e-15 Score=119.28 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=69.3
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
...+.+|+.+.|.|.+ .|.|.|.|.|+++|..+..+. ........+|.|.++..+|+|.|+|.|.|.+|..+.++
T Consensus 10 ~~~~~~G~~v~l~C~~--~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~ 84 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCST--TGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI 84 (90)
T ss_dssp EEEEETTSCEEEEEEE--ESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred cEEEECCCEEEEEEec--cCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEE
Confidence 3456789999999999 799999999999887765432 23446678999999999999999999999999999999
Q ss_pred EEEEE
Q psy2145 725 SLKVK 729 (808)
Q Consensus 725 ~l~V~ 729 (808)
.|.|.
T Consensus 85 ~v~V~ 89 (90)
T d1vcaa2 85 QVEIY 89 (90)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7.3e-15 Score=123.84 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=71.8
Q ss_pred cccCCceEE---EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeC-------CEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 647 EIMEGQSAH---YDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDF-------GYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 647 ~v~~G~~v~---l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
.+.+|..++ |.|.+ .|+|.|.|+|+|||++|..+.++...... ..+.|.|.++..+|+|.|+|.|+|.
T Consensus 8 ~~~~g~~~~~~ci~~~v--~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~ 85 (107)
T d1he7a_ 8 QLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85 (107)
T ss_dssp CCCCCCCCCEEEEEEEE--CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred EECCCeEEEEEEEEEEE--EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence 455555555 55578 89999999999999999988777654322 2467999999999999999999999
Q ss_pred CcceEEEEEEEEEeCCCcc
Q psy2145 717 AGEAVSSTSLKVKSKSDIV 735 (808)
Q Consensus 717 ~G~~~~s~~l~V~~~p~~~ 735 (808)
+|.++.++.|.|..+|...
T Consensus 86 ~G~~~~~i~v~v~~~P~~~ 104 (107)
T d1he7a_ 86 FGQASASIMAAFMDNPFEF 104 (107)
T ss_dssp TEEEEEEEEECCCSCTTSC
T ss_pred CCEEEEEEEEEEEcCCCCc
Confidence 9999999999999998543
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.6e-15 Score=132.70 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=73.7
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-----------------------------CCcEEEEEeCCEE
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM-----------------------------GSRFHVQHDFGYV 694 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~-----------------------------~~~~~~~~~~~~~ 694 (808)
+...+.+|+.++|.|.+ .|.|.|.|.|+++|..+.. ..++.+....+.+
T Consensus 17 ~~v~v~~G~~v~L~C~v--~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 94 (130)
T d1gxea_ 17 DTIVVVAGNKLRLDVPI--SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS 94 (130)
T ss_dssp CEEEESSSSCCCCEEEC--CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred CCEEEEcCCeEEEEEEE--EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence 34578999999999999 8999999999998866532 2356777778889
Q ss_pred EEEEccCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 695 TLDITKCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 695 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+|.|.++..+|+|.|+|.|+|.+|.++.++.|.|.
T Consensus 95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 99999999999999999999999999999999985
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.2e-15 Score=120.49 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=69.5
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC--cEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS--RFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVS 722 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 722 (808)
...+.+|+.++|.|.+ +.|.|.+.|||||+++..+. ++.+..+++.++|.|.++..+|+|.|+|.|.| ..+
T Consensus 9 ~~~v~~G~~v~l~C~v---~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~ 81 (90)
T d1x44a1 9 DTTAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQS 81 (90)
T ss_dssp CEEEETTEEEEEEEEC---SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEE
T ss_pred CEEEeCCCcEEEEEEE---CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceE
Confidence 3678999999999998 46889999999999998765 47788888999999999999999999999877 467
Q ss_pred EEEEEEEeC
Q psy2145 723 STSLKVKSK 731 (808)
Q Consensus 723 s~~l~V~~~ 731 (808)
++.|+|+.+
T Consensus 82 ~a~l~V~~k 90 (90)
T d1x44a1 82 SAKLSVDLK 90 (90)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEEC
Confidence 888988753
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.55 E-value=1.7e-15 Score=125.43 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=67.9
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE-EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT-TKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
.+.+|+++.|.|.+ .|.|.|.|.|+|||++|..+.++. .....+..+|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 16 ~v~~G~~v~l~C~~--~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 16 AVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EECTTCCEEEECCE--EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEEE--eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 57899999999999 799999999999999997654421 122223348999999999999999999999999999999
Q ss_pred EEE
Q psy2145 594 MKI 596 (808)
Q Consensus 594 l~V 596 (808)
|.|
T Consensus 94 l~V 96 (97)
T d3dara1 94 LDV 96 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.6e-15 Score=118.32 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=66.0
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
|.|...+.+ ..+.+|+++.|.|.+ .|.|.| .|.|||||.+|..... + .+.|.....+|+|.|+|.|+
T Consensus 2 P~f~~~P~~-~~v~~G~~~~l~C~~--~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~ 69 (85)
T d1rhfa2 2 PFFTVEPKD-LAVPPNAPFQLSCEA--VGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAH 69 (85)
T ss_dssp CEEEECCCC-EEECTTCCEEEEEEE--ECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEE
T ss_pred CcEEEeCCc-EEEcCCCEEEEEEEE--ecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEE
Confidence 778887764 678999999999999 799998 9999999999976432 1 24555556679999999999
Q ss_pred eCCcceEE-EEEEEEE
Q psy2145 715 NRAGEAVS-STSLKVK 729 (808)
Q Consensus 715 N~~G~~~~-s~~l~V~ 729 (808)
|.+|.+.+ ++.|.|+
T Consensus 70 N~~G~~~S~~~~v~Vk 85 (85)
T d1rhfa2 70 NLKGLASSRTATVHLQ 85 (85)
T ss_dssp ETTEEEECCCEEEEEC
T ss_pred cCCCcEEEEEEEEEEC
Confidence 99997644 6888774
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=6.6e-15 Score=122.86 Aligned_cols=94 Identities=19% Similarity=0.381 Sum_probs=75.2
Q ss_pred CCeeeecCCCc-ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC--eEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 503 RPVFTKPLQNI-DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR--ITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 503 ~P~f~~~~~~~-~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
||.|...+... .++..|+++.|.|.+ .|.|.|.|.|+|||..|..... .......+..+|.|.+++.+|+|.|+|
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~--~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 80 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEE--EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEE--EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence 67777655543 256789999999999 7999999999999999875432 122222333489999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEEe
Q psy2145 580 KATNALGEAVTTASMKIKT 598 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~~ 598 (808)
.|.|..|..+.++.|.|..
T Consensus 81 ~a~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 81 IAENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEEE
Confidence 9999999999999999875
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.54 E-value=4.9e-15 Score=122.65 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=70.5
Q ss_pred CCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE--EeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQ--HDFGYVTLDITKCVPADSGVYMCKAINRAGEAV 721 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 721 (808)
....+.+|+++.|.|.+ .|.|.|.|.|+|||..+..+....+. ......+|.|.++..+|+|.|+|.|.|.+|...
T Consensus 11 ~~~~~~~G~~v~l~C~~--~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 88 (97)
T d1biha3 11 KDMMAKAGDVTMIYCMY--GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 88 (97)
T ss_dssp CSEEEETTSCEEEEEEE--ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred CCEEEecCCeEEEEEEE--EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence 45678999999999999 79999999999999999876554433 233446899999999999999999999999865
Q ss_pred -EEEEEEEE
Q psy2145 722 -SSTSLKVK 729 (808)
Q Consensus 722 -~s~~l~V~ 729 (808)
.++.|.|.
T Consensus 89 s~s~~L~Vl 97 (97)
T d1biha3 89 KHSLKLTVV 97 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 57888873
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.1e-14 Score=122.08 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=74.9
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCC---CeEEEEEECCEEccC---CCcEEEEEe------CCEEEEEEccCCC
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP---TMRFEWFVNGVELKM---GSRFHVQHD------FGYVTLDITKCVP 703 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~~g~~l~~---~~~~~~~~~------~~~~~L~I~~v~~ 703 (808)
|.|+..+.+ .++.+|++++|.|.+ .|.| .|.|.|+|+|..... +.++..... ...++|.|.+++.
T Consensus 5 ~~Fv~~P~~-~~v~~G~~v~l~C~v--~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 81 (110)
T d2avga1 5 GLFVMRPQD-GEVTVGGSITFSARV--AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81 (110)
T ss_dssp CSEEECCCC-EEEETTSEEEEEEEE--ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT
T ss_pred CEeEECCCe-EEEECCCCEEEEEee--cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH
Confidence 678777664 689999999999999 7998 689999998864432 233333221 1356899999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEeC
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKSK 731 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~ 731 (808)
+|+|.|+|.|+|.+|.+++++.|.|+..
T Consensus 82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 109 (110)
T d2avga1 82 AFTGGYRCEVSTKDKFDCSNFNLTVHEA 109 (110)
T ss_dssp TCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred HHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence 9999999999999999999999999853
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=2.9e-15 Score=124.21 Aligned_cols=89 Identities=29% Similarity=0.493 Sum_probs=72.3
Q ss_pred CCeEEeecCCCccccC---CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEE
Q psy2145 635 KPIFTQLLTGTSEIME---GQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~---G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
+|.|...+.+ ..+.+ |+++.|.|.+ .|.|.|.|.|+|||+.|..+.+..+....+ ..|.|..+..+|+|.|+|
T Consensus 4 ~P~f~~~P~~-~~~~~g~~~~~v~l~C~~--~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C 79 (97)
T d1cs6a1 4 GPVFEEQPAH-TLFPEGSAEEKVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQC 79 (97)
T ss_dssp EEEEEECCCC-EEEETTCSCCEEEECCEE--EEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEE
T ss_pred CCEEEEeCCC-EEEECccCCCeEEEEEEE--EEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEE
Confidence 5888877765 34444 4799999999 799999999999999998776665555555 478899999999999999
Q ss_pred EEEeCCcceEE-EEEEE
Q psy2145 712 KAINRAGEAVS-STSLK 727 (808)
Q Consensus 712 ~A~N~~G~~~~-s~~l~ 727 (808)
.|+|.+|.+.+ ++.|.
T Consensus 80 ~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 80 VATNARGTVVSREASLR 96 (97)
T ss_dssp EEEETTEEEECCCEEEE
T ss_pred EEEECCCEEEEEEEEEe
Confidence 99999998754 56664
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.6e-15 Score=120.21 Aligned_cols=90 Identities=20% Similarity=0.360 Sum_probs=77.2
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC-CCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS-SRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
..+|.|+.++.+...|.+|+.+.|.|.+ . .|.+.+.|||||..|..+ .++.+..+++.++|.|.++..+|+|.|+|
T Consensus 3 ~~~~~f~~~l~~~~~v~~G~~v~l~c~v--~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c 79 (94)
T d1pd6a_ 3 KKSTAFQKKLEPAYQVSKGHKIRLTVEL--A-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 79 (94)
T ss_dssp STTSSCSEECCSEEEEETTSCEEEEEEC--S-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEE
T ss_pred CCCCcEEEeCCCCEEECcCCeEEEEEEE--C-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEE
Confidence 3578999999887679999999999997 4 588999999999999765 56778888888899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEE
Q psy2145 580 KATNALGEAVTTASMKIK 597 (808)
Q Consensus 580 ~a~N~~G~~~~s~~l~V~ 597 (808)
.|.| ..+++.|.|.
T Consensus 80 ~a~n----~~~s~~l~V~ 93 (94)
T d1pd6a_ 80 VVGG----EKCSTELFVK 93 (94)
T ss_dssp EETT----EEECCEEEEE
T ss_pred EEee----EEEEEEEEEE
Confidence 9977 4566777775
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=8.9e-15 Score=119.44 Aligned_cols=87 Identities=20% Similarity=0.349 Sum_probs=71.4
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
+|.|....+....+.+|+.+.|.|.+ .|.|.|.|.|+|++..+.... ...++ +|.|.++..+|+|.|+|.|.
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~--~g~P~p~i~W~k~~~~~~~~~----~~~~~--~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFA--FGNPVPQIKWRKLDGSQTSKW----LSSEP--LLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEE--EEESCCEEEEEECCSCCSCCC----SBSSS--EEEECSCCGGGCEEEEEEEE
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEE--EEccCCEEEEEecccccceEe----eeeee--EEEeCCCCccCCEEEEEEEE
Confidence 67777665444478999999999999 799999999999876543321 11223 79999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|..+.++.|.|+
T Consensus 76 N~~G~~~~~~~l~V~ 90 (91)
T d1cs6a3 76 NIKGRDTYQGRIIIH 90 (91)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEEE
Confidence 999999999999886
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=1.1e-14 Score=120.31 Aligned_cols=90 Identities=21% Similarity=0.367 Sum_probs=75.7
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
+|.+. +. ...+.+|++++|.|.+ .| |.+.|.|+|||+.|..+.++.+..+.+ +|.|.++..+|+|.|+|.|.
T Consensus 5 ~P~i~--~~-~~~v~~g~~v~l~C~~--~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v~~~d~G~Y~C~a~ 76 (96)
T d1l6za2 5 QPFLQ--VT-NTTVKELDSVTLTCLS--ND-IGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEIS 76 (96)
T ss_dssp CCCEE--CS-CSEECTTSCEEEEECC--CC-SSCEEEEEETTEECCCCTTEEEETTTT--EEEECSCCGGGCEEEEEEEE
T ss_pred CCeEE--cC-ceEEeCCCeEEEEEcc--CC-CCCCEEEEEeeeecccccceeccCCce--EEEEeccchhhceEEEEEEE
Confidence 45553 22 3578999999999987 45 668999999999999999988765544 89999999999999999999
Q ss_pred eCCcceEE-EEEEEEEeCC
Q psy2145 715 NRAGEAVS-STSLKVKSKS 732 (808)
Q Consensus 715 N~~G~~~~-s~~l~V~~~p 732 (808)
|.+|...+ .+.|.|..+|
T Consensus 77 N~~g~~~S~~~~L~V~~~P 95 (96)
T d1l6za2 77 NPVSVRRSNSIKLDIIFDP 95 (96)
T ss_dssp SSSCCEECCCCEEEECCSC
T ss_pred eCCCCeEEEeEEEEEEcCC
Confidence 99998864 6899998776
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.4e-15 Score=124.70 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=75.1
Q ss_pred CeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcE-EEEEEEE
Q psy2145 636 PIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSG-VYMCKAI 714 (808)
Q Consensus 636 P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~A~ 714 (808)
|.|...+.+ ..+.+|+.+.|.|.+ .|.|.|.|.|+++|..+....+. ........|.|.++..+|.| .|+|.|+
T Consensus 3 P~i~~~~~~-~~v~~G~~v~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~~Y~C~a~ 77 (92)
T d2ifga1 3 PTLKVQVPN-ASVDVGDDVLLRCQV--EGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAE 77 (92)
T ss_dssp CEEEEECCS-SCCBTTCCEEEEEEE--ECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred CEEEEeCCC-EEEeCCCEEEEeeec--cCCCCcEEEEEECCceeeeeeee--eeeccceeEEEccccccccceEEEEEEE
Confidence 888888775 679999999999999 79999999999999887653222 22355679999999999999 6999999
Q ss_pred eCCcceEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKV 728 (808)
Q Consensus 715 N~~G~~~~s~~l~V 728 (808)
|.+|.++.++.|.|
T Consensus 78 N~~G~~~~s~~l~V 91 (92)
T d2ifga1 78 NDVGRAEVSVQVNV 91 (92)
T ss_dssp ETTEECCEEECCCC
T ss_pred cCCCEEEEEEEEEE
Confidence 99999999998876
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.3e-14 Score=115.14 Aligned_cols=89 Identities=19% Similarity=0.371 Sum_probs=72.8
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
+|.++.++.....+.+|+++.|.|.+. .|.|.+.|+|++++.++.. . ....+...|.|.+++.+|+|.|+|+|.
T Consensus 2 kP~~i~~p~~~~~~~~G~~~~l~C~~~-~g~p~p~v~W~~~~~~~~~---~--~~~~~~~~L~i~~v~~~D~G~Y~C~As 75 (90)
T d1gsma1 2 KPLQVEPPEPVVAVALGASRQLTCRLA-CADRGASVQWRGLDTSLGA---V--QSDTGRSVLTVRNASLSAAGTRVCVGS 75 (90)
T ss_dssp CSEEEESCCSEEEEETTCCEEEEEEEC-CSSTTCEEEEESSTTTTCC---E--EEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCcEEeCCCCeEEEEeCCcEEEEEEec-CCCCccEEEEEEeeeeeee---e--eccCceeeEEcCccChhhCCcEEEEEE
Confidence 466666666655788999999999983 4899999999998877632 1 223445589999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|..+.++.|.|.
T Consensus 76 n~~g~~~~s~~l~Vy 90 (90)
T d1gsma1 76 CGGRTFQHTVQLLVY 90 (90)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEEC
Confidence 999999999999884
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.6e-16 Score=123.07 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=63.0
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..++.+|+.+.|.|.+ .|.|.|+|+|+|||..+.... .+.+++.+|+|.|+|+|+|.+|+++.++
T Consensus 13 ~~~~~~G~~~~l~C~a--~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~ 77 (84)
T d2oz4a3 13 NWTWPENSQQTPMCQA--WGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREV 77 (84)
T ss_dssp EEEEETTCEECCCCCC--EEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cEEEeCCCEEEEEEEE--eEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEE
Confidence 3568899999999999 799999999999998876543 3456788999999999999999999999
Q ss_pred EEEEEeC
Q psy2145 725 SLKVKSK 731 (808)
Q Consensus 725 ~l~V~~~ 731 (808)
.|.|..+
T Consensus 78 ~l~V~~P 84 (84)
T d2oz4a3 78 TVNVLSP 84 (84)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999764
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3e-14 Score=119.08 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=77.8
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEee-----CcEEEEEECCCCCCCCEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHD-----FGYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~ 576 (808)
.||.|+.... ...+..+.|.|.+ .|+|.|+|.|+|||+.|..+.++.+... .....|.|.+++.+|+|.
T Consensus 3 ~pP~it~~~~----~~~~~~~~i~~~v--~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (103)
T d1wwbx_ 3 FAPTITFLES----PTSDHHWCIPFTV--KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD 76 (103)
T ss_dssp CCCCCCCCCC----CCCCCEEEEEEEE--ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred cCCeeEEcCC----CccceeEEEEEEE--EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence 4677754332 2467888999999 8999999999999999998776654421 223579999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEEecccc
Q psy2145 577 YICKATNALGEAVTTASMKIKTKAGL 602 (808)
Q Consensus 577 Y~C~a~N~~G~~~~s~~l~V~~~~~i 602 (808)
|+|.|+|..|+++.++.|.|...|.+
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~~~P~i 102 (103)
T d1wwbx_ 77 YTLIAKNEYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred EEEEEeccCCEEEEEEEEEEEeCCCC
Confidence 99999999999999999999887654
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.51 E-value=4.4e-16 Score=126.46 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=70.7
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSSTS 725 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~~ 725 (808)
.++.+|+++.|.|.+ +.|.|.+.|+|||++|..++++.+..+++.++|.|.++..+|+|.|+|.|.|.. +++.
T Consensus 11 ~~v~~G~~~~~~c~v---s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~sa~ 83 (89)
T d1tiua_ 11 VEVFVGETAHFEIEL---SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SAAN 83 (89)
T ss_dssp EEEETTSCCCEEEBC---SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CCEE
T ss_pred EEEeCCCcEEEEEEE---CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EEEE
Confidence 678999999999987 579999999999999999999999999999999999999999999999987764 4677
Q ss_pred EEEEe
Q psy2145 726 LKVKS 730 (808)
Q Consensus 726 l~V~~ 730 (808)
|.|+.
T Consensus 84 l~V~e 88 (89)
T d1tiua_ 84 LKVKE 88 (89)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88764
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.4e-14 Score=117.54 Aligned_cols=92 Identities=17% Similarity=0.419 Sum_probs=77.6
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecC------CCCCeEEEeeCcEEEEEECCCC-CCCC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLE------DSSRITTKHDFGYVAMDLSHVR-AEDE 574 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~------~~~~~~~~~~~~~~~L~I~~v~-~~D~ 574 (808)
||.|...+.+. .+.+|+.+.|.|.+ .|.|.+ .+.|+|++..+. ...++.+........|.|.++. .+|+
T Consensus 2 PP~i~~~~~~~-~v~~G~~v~l~C~v--~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~ 78 (101)
T d3b5ha1 2 PPRVKAVKSSE-HINEGETAMLVCKS--ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 78 (101)
T ss_dssp SCCCEESCSEE-EECTTSCEEEEEEC--CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred CceEEEcCCcE-EECcCCeEEEEEEE--EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC
Confidence 78888877766 68999999999999 799887 699999764332 2356777778888899999998 5799
Q ss_pred EEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 575 GIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 575 G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
|.|+|.|.|..|..+.++.|.|+
T Consensus 79 G~Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 79 GQYRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCEEEEEEEEEEC
Confidence 99999999999999999999884
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=4.1e-14 Score=115.12 Aligned_cols=78 Identities=22% Similarity=0.453 Sum_probs=66.5
Q ss_pred ccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEE
Q psy2145 514 DAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTAS 593 (808)
Q Consensus 514 ~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~ 593 (808)
..+.+|+++.|.|.+. .+.|.+.|.|+|+|..+..+... ..++ .|.|.++..+|+|.|+|.|.|..|..+.+++
T Consensus 12 ~~v~~G~~~~l~C~~~-~~~p~~~v~W~k~~~~~~~~~~~---~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 85 (89)
T d1gl4b_ 12 QSVRPGADVTFICTAK-SKSPAYTLVWTRLHNGKLPSRAM---DFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 85 (89)
T ss_dssp EEECTTCCEEEEEEEE-ESSSCCEEEEEEGGGBCCCTTEE---EETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred EEEeCCCcEEEEEEcc-CCCCCCEEEEecCCceeeccccE---eece--EEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence 3689999999999994 47889999999999888665422 2233 7999999999999999999999999999999
Q ss_pred EEEE
Q psy2145 594 MKIK 597 (808)
Q Consensus 594 l~V~ 597 (808)
|.|+
T Consensus 86 l~V~ 89 (89)
T d1gl4b_ 86 LHVQ 89 (89)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9874
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.7e-14 Score=117.93 Aligned_cols=89 Identities=13% Similarity=0.279 Sum_probs=74.5
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-eCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-DFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
+.|...+.+. .+.+|+.+.|.|.+ .|.|.|.++|+|+|..+....+..... .++ .|.|.+++.+|+|.|+|.|.
T Consensus 2 ~~F~~~P~~~-~v~~G~~~~l~C~v--~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~ 76 (92)
T d1epfa2 2 LMFKNAPTPQ-EFKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGR 76 (92)
T ss_dssp SEEEECCSSE-ECCTTSCEEECCEE--ECSSCCEEEEEETTEEGGGGCCTTEEECTTS--CEEETTCCGGGCEEEEEEEE
T ss_pred cEEEEcCCCE-EEeCCCcEEEEEEE--eecCCCeEEEEEcCcccccccceeeeeeeee--eEEECCCCHHhCEEEEEEEE
Confidence 5777777776 79999999999999 799999999999999988765433332 223 69999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|.......|.|.
T Consensus 77 n~~~~~~~~~~i~Vi 91 (92)
T d1epfa2 77 ILARGEINFKDIQVI 91 (92)
T ss_dssp EGGGTEEEEEEEEEE
T ss_pred ECcCCEEEEEEEEEE
Confidence 998888888777774
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.6e-14 Score=112.89 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=66.8
Q ss_pred CeEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 184 PIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 184 P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
|.|...|.+..+.+|+++.|.|.+ .|.|.| +|+|||||.++..... + .+.|.....+|+|.|+|.|.|
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~--~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~N 70 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEA--VGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAHN 70 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEE--ECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEEE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEE--ecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEEc
Confidence 789999999999999999999999 588876 9999999999875432 1 344555667899999999999
Q ss_pred CceeEEE-EEEEEE
Q psy2145 263 ALGQAVT-SGNLLV 275 (808)
Q Consensus 263 ~~g~~~~-~~~l~V 275 (808)
..|...+ .+.|.|
T Consensus 71 ~~G~~~S~~~~v~V 84 (85)
T d1rhfa2 71 LKGLASSRTATVHL 84 (85)
T ss_dssp TTEEEECCCEEEEE
T ss_pred CCCcEEEEEEEEEE
Confidence 9997654 677776
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.2e-14 Score=120.34 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE----e--------CCEEEEEEccCC
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH----D--------FGYVTLDITKCV 702 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~----~--------~~~~~L~I~~v~ 702 (808)
+|.|.........+..|+++.|.|.+ .|+|.|.|.|++||..+.......... + ...+.|.|.+++
T Consensus 1 kP~i~~p~~~~i~v~~G~~v~l~C~v--~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 78 (107)
T d1iray3 1 RPVIVSPANETMEVDLGSQIQLICNV--TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 78 (107)
T ss_dssp CCEEEECCSEEEECCTTCCEEEEEEE--EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred CCCEEEECCCEEEEeCCCEEEEEEEe--ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecc
Confidence 47777665555668899999999999 799999999999999998665433211 1 014689999999
Q ss_pred CCCcE-EEEEEEEeCCcceEEEEEEE
Q psy2145 703 PADSG-VYMCKAINRAGEAVSSTSLK 727 (808)
Q Consensus 703 ~~D~G-~Y~C~A~N~~G~~~~s~~l~ 727 (808)
.+|.| .|+|.|+|.+|.++..+.|+
T Consensus 79 ~~D~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 79 SRFYKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred hHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence 99999 59999999999998888886
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.4e-14 Score=114.70 Aligned_cols=73 Identities=8% Similarity=0.103 Sum_probs=64.3
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+.+|++++|+|.+ .|.|.|.|.|++++..+.. ... .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 10 ~v~~G~~~~L~C~~--~g~p~P~i~W~~~~~~~~~--------~~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v 77 (84)
T d2nxyb2 10 HLLQGQSLTLTLES--PPGSSPSVQCRSPRGKNIQ--------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 77 (84)
T ss_dssp CEETTCCEEEEEEC--CTTCCCEEEEECTTCCEEE--------ESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCeEEEEEEe--EcCCchheEEEeeccccee--------eee--eeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence 58999999999999 8999999999998765432 222 69999999999999999999999999999999
Q ss_pred EEEec
Q psy2145 595 KIKTK 599 (808)
Q Consensus 595 ~V~~~ 599 (808)
.|...
T Consensus 78 ~V~~~ 82 (84)
T d2nxyb2 78 VVLAF 82 (84)
T ss_dssp CEECC
T ss_pred EEEec
Confidence 99864
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.1e-15 Score=120.94 Aligned_cols=91 Identities=19% Similarity=0.333 Sum_probs=67.6
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEE---CCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFV---NGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~---~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
.|.|.. +.+ ..+.+|++++|.|.+ .|.|.|.+.|++ ++..+.......+......++|.|.++..+|+|.|+|
T Consensus 2 ~P~f~~-~~~-~~v~~G~~v~l~C~~--~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 77 (96)
T d2c9aa1 2 TPHFLR-IQN-VEVNAGQFATFQCSA--IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77 (96)
T ss_dssp SCEECC-CCC-EEECSSSCEEEEEEE--ESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEE
T ss_pred cCeecc-cCC-EEEeCCCEEEEEEEE--eecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEE
Confidence 488864 554 689999999999999 799988655433 3443333333333333345689999999999999999
Q ss_pred EEEeCCcceEEE-EEEEEE
Q psy2145 712 KAINRAGEAVSS-TSLKVK 729 (808)
Q Consensus 712 ~A~N~~G~~~~s-~~l~V~ 729 (808)
.|.|.+|.+.++ +.|.|+
T Consensus 78 ~a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 78 MIRTEGGVGISNYAELVVK 96 (96)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEEC
Confidence 999999987555 799884
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.5e-15 Score=125.68 Aligned_cols=87 Identities=15% Similarity=0.252 Sum_probs=70.9
Q ss_pred ccccCCceEEEEEEEeeCCCC---CeEEEEEECCEEcc---CCCcEEEEEe------CCEEEEEEccCCCCCcEEEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDP---TMRFEWFVNGVELK---MGSRFHVQHD------FGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~~g~~l~---~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
..+.+|++++|.|.+ .|.| .|.|.|+|++.... .+.++.+... .+.++|.|.++..+|+|.|+|.|
T Consensus 10 ~~v~~G~~v~l~C~v--~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 87 (113)
T d2dava1 10 GTVKVGEDITFIAKV--KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV 87 (113)
T ss_dssp CEEETTCCEEEEEEE--ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEE
T ss_pred EEEeCCCEEEEEEEE--ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEE
Confidence 678999999999999 7998 68999999875432 2344443221 22468999999999999999999
Q ss_pred EeCCcceEEEEEEEEEeCCCc
Q psy2145 714 INRAGEAVSSTSLKVKSKSDI 734 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~~~p~~ 734 (808)
+|.+|..++++.|.|..++..
T Consensus 88 ~N~~G~~~~~~~L~V~~~~~~ 108 (113)
T d2dava1 88 TYKDKFDSCSFDLEVHESTGT 108 (113)
T ss_dssp ECSSCEEEECCEEEEECCCCS
T ss_pred EeCCCEEEEEEEEEEEcCCCc
Confidence 999999999999999877643
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.8e-14 Score=124.32 Aligned_cols=94 Identities=19% Similarity=0.350 Sum_probs=76.7
Q ss_pred CCCeeee----cCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC----------------------------
Q psy2145 502 QRPVFTK----PLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED---------------------------- 549 (808)
Q Consensus 502 ~~P~f~~----~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~---------------------------- 549 (808)
+||.+.. ..++...+.+|+.++|.|.+ .|.|.|.|.|+|++..+..
T Consensus 3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v--~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPI--SGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE 80 (130)
T ss_dssp BCCCSCCSSSCCCCCEEEESSSSCCCCEEEC--CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCS
T ss_pred CCCEEECCCCCCCCCCEEEEcCCeEEEEEEE--EEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeec
Confidence 4666532 23334478999999999999 8999999999998765532
Q ss_pred -CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEEEEE
Q psy2145 550 -SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASMKIK 597 (808)
Q Consensus 550 -~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~V~ 597 (808)
..++.+....+.++|.|.++..+|+|.|+|.|+|.+|..++++.|.|.
T Consensus 81 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 81 TEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp CSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred cCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 234566667777899999999999999999999999999999999885
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.48 E-value=3.2e-15 Score=125.66 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=67.0
Q ss_pred EEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 638 FTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 638 ~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
|.....++..+.+|+.+.|.|.+. .|.|.|.|.|+|||..+...............+|.|.++..+|+|.|+|.|+|..
T Consensus 6 F~~~~~~~v~v~eG~~~~l~C~~~-~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 84 (105)
T d1cs6a2 6 FSAEERDPVKITEGWGVMFTCSPP-PHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 84 (105)
T ss_dssp CCSSCCCCEEEETTSCEEECCCCC-SEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred ccCCCCCCEEEeCCCeEEEEEEcc-CCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECC
Confidence 444445557799999999999863 5899999999999987754332222222223379999999999999999999999
Q ss_pred cceEEEEE
Q psy2145 718 GEAVSSTS 725 (808)
Q Consensus 718 G~~~~s~~ 725 (808)
|..+.++.
T Consensus 85 g~~~~~v~ 92 (105)
T d1cs6a2 85 DFITKSVF 92 (105)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99887754
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.9e-13 Score=113.02 Aligned_cols=82 Identities=30% Similarity=0.524 Sum_probs=67.7
Q ss_pred ccccCCceEEEEEEEeeCCCCC-eEEEEEE-CCEEccC-CCcEEEE-EeCCEEEEEEccCCCCCcEEEEEEEEeCCcce-
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPT-MRFEWFV-NGVELKM-GSRFHVQ-HDFGYVTLDITKCVPADSGVYMCKAINRAGEA- 720 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~-p~i~W~~-~g~~l~~-~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~- 720 (808)
..+.+|+++.|.|.+ .|.|+ |.|.|+| ||..+.. +.++.+. .+.+.++|.|.++..+|+|.|+|.|+|..|..
T Consensus 10 ~~v~~G~~~~l~C~v--~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 87 (97)
T d1epfa1 10 GEISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS 87 (97)
T ss_dssp EEEETTCCEEEEEEE--CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred EEEccCCcEEEEEEE--EeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEE
Confidence 568899999999999 79985 7999999 6776654 5566654 35677899999999999999999999999975
Q ss_pred EEEEEEEEE
Q psy2145 721 VSSTSLKVK 729 (808)
Q Consensus 721 ~~s~~l~V~ 729 (808)
+.++.|.|.
T Consensus 88 ~~tv~l~V~ 96 (97)
T d1epfa1 88 EATVNVKIF 96 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 456777774
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.47 E-value=8.4e-14 Score=118.32 Aligned_cols=93 Identities=20% Similarity=0.434 Sum_probs=71.0
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC----CC--CeE-------EEeeCcEEEEEECC
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED----SS--RIT-------TKHDFGYVAMDLSH 568 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~----~~--~~~-------~~~~~~~~~L~I~~ 568 (808)
.+|.|...++...++.+|+++.|.|.+ .|.|.|.|.|+|++..... .. ... ...+.+...|.|.+
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 80 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEE--ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECS
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEE--EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECC
Confidence 478888876544479999999999999 7999999999997654321 11 111 11122345799999
Q ss_pred CCCCCCEEEEEEEEeCCeeEEEEEEEEE
Q psy2145 569 VRAEDEGIYICKATNALGEAVTTASMKI 596 (808)
Q Consensus 569 v~~~D~G~Y~C~a~N~~G~~~~s~~l~V 596 (808)
+..+|+|.|+|.|.|..|...+++.|.|
T Consensus 81 ~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 81 VTFEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 9999999999999999999999999987
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.7e-14 Score=113.96 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeC--CeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDF--GYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
.|.++ .+.+|+++.|.|.+. +.|.+.|.|+|||..|..+.+..+.... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~P~~~-~v~~G~~~~l~C~v~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 78 (91)
T d1rhfa1 2 APVKL-TVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE 78 (91)
T ss_dssp CCEEE-EEETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred cCeeE-EEcCCCeEEEEEEEE--ecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCC
Confidence 36677 899999999999998 5888999999999999877766554433 446899999999999999999999999
Q ss_pred ce-EEEEEEEEe
Q psy2145 133 FA-EVQATLQCR 143 (808)
Q Consensus 133 ~~-~~~~~l~V~ 143 (808)
.. +..+.|.|.
T Consensus 79 ~~~S~~~~l~V~ 90 (91)
T d1rhfa1 79 TEISQPVWLTVE 90 (91)
T ss_dssp CEECCCEEEEEE
T ss_pred CEEEEEEEEEEE
Confidence 75 456888775
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.2e-13 Score=115.69 Aligned_cols=93 Identities=15% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCC---CcEEEEEECCEecCC---CCCeEEEee------CcEEEEEECCCC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP---TLKVEWFRNEKPLED---SSRITTKHD------FGYVAMDLSHVR 570 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P---~~~v~W~k~g~~l~~---~~~~~~~~~------~~~~~L~I~~v~ 570 (808)
.|.|+..+.++ ++.+|++++|.|.+ .|.| .|.|.|+|++..... +.++..... .+.+.|.|.+++
T Consensus 4 ~~~Fv~~P~~~-~v~~G~~v~l~C~v--~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 80 (110)
T d2avga1 4 IGLFVMRPQDG-EVTVGGSITFSARV--AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80 (110)
T ss_dssp TCSEEECCCCE-EEETTSEEEEEEEE--ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCC
T ss_pred CCEeEECCCeE-EEECCCCEEEEEee--cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccC
Confidence 36788888887 78999999999999 7888 678999998854322 223332221 134579999999
Q ss_pred CCCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 571 AEDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 571 ~~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
.+|+|.|+|.|.|..|..+++++|.|..
T Consensus 81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 81 PAFTGGYRCEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred HHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence 9999999999999999999999999985
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.6e-15 Score=121.54 Aligned_cols=89 Identities=17% Similarity=0.325 Sum_probs=75.6
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCE-EEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEG-IYICKA 581 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a 581 (808)
.|.|...+.+. .+.+|+.+.|.|.+ .|.|.|.|+|+|+|..+...... ....+...|.|.+++.+|.| .|+|.|
T Consensus 2 ~P~i~~~~~~~-~v~~G~~v~l~C~~--~g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~~Y~C~a 76 (92)
T d2ifga1 2 VPTLKVQVPNA-SVDVGDDVLLRCQV--EGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWA 76 (92)
T ss_dssp CCEEEEECCSS-CCBTTCCEEEEEEE--ECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred CCEEEEeCCCE-EEeCCCEEEEeeec--cCCCCcEEEEEECCceeeeeeee--eeeccceeEEEccccccccceEEEEEE
Confidence 58888888887 69999999999999 79999999999999887653322 22344558999999999999 699999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2145 582 TNALGEAVTTASMKI 596 (808)
Q Consensus 582 ~N~~G~~~~s~~l~V 596 (808)
.|..|..+.++.|.|
T Consensus 77 ~N~~G~~~~s~~l~V 91 (92)
T d2ifga1 77 ENDVGRAEVSVQVNV 91 (92)
T ss_dssp EETTEECCEEECCCC
T ss_pred EcCCCEEEEEEEEEE
Confidence 999999999988876
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.6e-13 Score=110.30 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=67.1
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+.+|+.+.|.|.+ .|.|.|.+.|++++..+..+. ........+|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 12 ~~~~G~~v~l~C~~--~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v 86 (90)
T d1vcaa2 12 LAQIGDSVSLTCST--TGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (90)
T ss_dssp EEETTSCEEEEEEE--ESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCEEEEEEec--cCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence 46789999999999 899999999999887765432 2333455689999999999999999999999999999999
Q ss_pred EEE
Q psy2145 595 KIK 597 (808)
Q Consensus 595 ~V~ 597 (808)
.|.
T Consensus 87 ~V~ 89 (90)
T d1vcaa2 87 EIY 89 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=5.3e-14 Score=119.68 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=64.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE--------EEEeCCEEEEEEccCCCCCcEEEEEEEEeCC
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH--------VQHDFGYVTLDITKCVPADSGVYMCKAINRA 717 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 717 (808)
..+.+|+++.|.|.+. .|+|.+.|.|+|||..+....... .......+.|.|.+++.+|+|.|+|.|+|.+
T Consensus 12 ~~v~~G~~v~L~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~ 90 (110)
T d1f97a2 12 SSVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 90 (110)
T ss_dssp SEEETTSCEEEEEECS-CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred CEEecCCeEEEEEEee-cCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence 3688999999999984 489999999999999887654332 2233344589999999999999999999999
Q ss_pred cceEEEEEEEEE
Q psy2145 718 GEAVSSTSLKVK 729 (808)
Q Consensus 718 G~~~~s~~l~V~ 729 (808)
|.+..+..+.+.
T Consensus 91 G~~~~s~~v~l~ 102 (110)
T d1f97a2 91 GTAMRSEAAHMD 102 (110)
T ss_dssp SCCEECCCEEEE
T ss_pred CcEEEEEEEEEE
Confidence 988776554444
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.45 E-value=3e-14 Score=117.90 Aligned_cols=89 Identities=29% Similarity=0.455 Sum_probs=72.2
Q ss_pred CCeeeecCCCcccccCC---CceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEG---KNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G---~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
+|.|+..+.+. .+.+| +++.|.|.+ .|.|.|.++|+|||..|..+........++. .|.|..+..+|+|.|+|
T Consensus 4 ~P~f~~~P~~~-~~~~g~~~~~v~l~C~~--~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C 79 (97)
T d1cs6a1 4 GPVFEEQPAHT-LFPEGSAEEKVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLVAGD-LVISNPVKAKDAGSYQC 79 (97)
T ss_dssp EEEEEECCCCE-EEETTCSCCEEEECCEE--EEESCCEEEEEETTEECCCSTTSSEEEETTE-EEEESCCHHHHCEEEEE
T ss_pred CCEEEEeCCCE-EEECccCCCeEEEEEEE--EEeCCCEEEEEEeeeeccCCCCceEEeeeee-EEEEecccccCCEEEEE
Confidence 68999888886 34444 789999999 7999999999999999987655544444443 78899999999999999
Q ss_pred EEEeCCeeEEE-EEEEE
Q psy2145 580 KATNALGEAVT-TASMK 595 (808)
Q Consensus 580 ~a~N~~G~~~~-s~~l~ 595 (808)
.|+|..|...+ .++|.
T Consensus 80 ~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 80 VATNARGTVVSREASLR 96 (97)
T ss_dssp EEEETTEEEECCCEEEE
T ss_pred EEEECCCEEEEEEEEEe
Confidence 99999998753 56653
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.45 E-value=1.1e-13 Score=111.52 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=63.3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE-EEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV-SST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~s~ 724 (808)
..+.+|++++|.|.+. .|.|.+.+.|||||+.+.... ....|.|.++..+|+|.|+|.|.|..|... ..+
T Consensus 10 ~~v~eG~~v~L~C~~~-~~~p~~~~~W~k~g~~~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v 80 (88)
T d2fcba2 10 LEFQEGETIVLRCHSW-KDKPLVKVTFFQNGKSKKFSR--------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV 80 (88)
T ss_dssp SEECTTCCEEEEEEEG-GGCCCEEEEEEETTEEEEEES--------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CeEecCCeEEEEEEec-CCCCCcEEEEEeecccccccc--------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence 3588999999999983 356788999999999875322 223799999999999999999999999765 468
Q ss_pred EEEEEeC
Q psy2145 725 SLKVKSK 731 (808)
Q Consensus 725 ~l~V~~~ 731 (808)
.|.|++|
T Consensus 81 ~l~V~~P 87 (88)
T d2fcba2 81 TITVQAP 87 (88)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 8888765
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.8e-13 Score=113.79 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe--eC--cEEEEEECCCCCCCCEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH--DF--GYVAMDLSHVRAEDEGI 576 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~ 576 (808)
..||.|+.... ...+....|.|.+ .|.|.|+|.|+|||++|..+.++.... +. ....|.|.+++.+|+|.
T Consensus 3 ~~PP~i~~~~~----~~~~~~~~i~~~v--~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (105)
T d1wwca_ 3 YYPPRVVSLEE----PELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN 76 (105)
T ss_dssp CCCCCCCCCCC----CCCCCEEEEEEEE--ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred EcCCeeEEeCC----CEEEEEEEEEEEE--EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceE
Confidence 34677654322 1234556688898 799999999999999998887765432 21 23579999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEEeccc
Q psy2145 577 YICKATNALGEAVTTASMKIKTKAG 601 (808)
Q Consensus 577 Y~C~a~N~~G~~~~s~~l~V~~~~~ 601 (808)
|+|.|+|..|..++++.|.|...|.
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~~~P~ 101 (105)
T d1wwca_ 77 YTLIAKNPLGTANQTINGHFLKEPF 101 (105)
T ss_dssp EEEEEEETTEEEEEEEEECCSCCCC
T ss_pred EEEEEEcCCCEEEEEEEEEEEeCCC
Confidence 9999999999999999999887653
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.43 E-value=1.3e-14 Score=117.50 Aligned_cols=86 Identities=27% Similarity=0.356 Sum_probs=75.2
Q ss_pred eeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 505 VFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 505 ~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
.|..++.++ .+.+|+++.|.|.+ +.|.+.+.|+|||.+|..+.++.+..+++.++|.|.++..+|+|.|+|.|.|.
T Consensus 3 ~i~~~l~d~-~v~~G~~~~~~c~v---s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 78 (89)
T d1tiua_ 3 EVEKPLYGV-EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA 78 (89)
T ss_dssp CCSBCCCCE-EEETTSCCCEEEBC---SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred EEEcCCcCE-EEeCCCcEEEEEEE---CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce
Confidence 366777887 69999999999987 57899999999999999999999999999999999999999999999999876
Q ss_pred CeeEEEEEEEEEEe
Q psy2145 585 LGEAVTTASMKIKT 598 (808)
Q Consensus 585 ~G~~~~s~~l~V~~ 598 (808)
. +++.|.|..
T Consensus 79 ~----~sa~l~V~e 88 (89)
T d1tiua_ 79 K----SAANLKVKE 88 (89)
T ss_dssp B----CCEEEEEEC
T ss_pred E----EEEEEEEEE
Confidence 4 456677753
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.4e-13 Score=113.67 Aligned_cols=91 Identities=18% Similarity=0.328 Sum_probs=68.1
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEe---eCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWF---HNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~---~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
+|.|. .+.++.+.+|++++|.|.+ .+.|.+.+.|+ +++..+............+..+|.|.++..+|+|.|+|.
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~--~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 78 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSA--IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM 78 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEE--ESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEE--eecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence 68896 5899999999999999999 46665544432 234444333333344444556899999999999999999
Q ss_pred EEeCceeEEEE-EEEEEe
Q psy2145 260 AVNALGQAVTS-GNLLVH 276 (808)
Q Consensus 260 a~n~~g~~~~~-~~l~V~ 276 (808)
|.|..|...++ +.|.|+
T Consensus 79 a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 79 IRTEGGVGISNYAELVVK 96 (96)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEeCCCeEEEEEEEEEEC
Confidence 99999987655 888874
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1e-13 Score=118.49 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=73.9
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCC---CceEEEEeCCEEee---ccCcEEEEe------eCCeEEEEEcccCcC
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDS---NLKVEWFKNGRPVT---IGHRFRPIH------DFGYVALDIIDTIPE 118 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~g~~l~---~~~r~~~~~------~~~~~~L~I~~~~~~ 118 (808)
.|+..|.++ .+.+|++++|.|.+.+ .| .+.|.|||++.... .+.++.... ..+.+.|.|.+++.+
T Consensus 2 ~F~~~P~~~-~v~~G~~v~l~C~v~g--~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 78 (113)
T d2dava1 2 LFIEKPQGG-TVKVGEDITFIAKVKA--EDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 78 (113)
T ss_dssp SCCSCCCCC-EEETTCCEEEEEEEEC--CCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred EEeECCceE-EEeCCCEEEEEEEEcc--CCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHH
Confidence 467889998 9999999999999994 55 57999999875432 233333221 123457999999999
Q ss_pred CCeeEEEEEEecCcceEEEEEEEEecCC
Q psy2145 119 DSGTYTCRAVNLVGFAEVQATLQCRGSA 146 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 146 (808)
|+|.|+|.|.|..|..++++.|.|....
T Consensus 79 D~G~Y~C~a~N~~G~~~~~~~L~V~~~~ 106 (113)
T d2dava1 79 FAGNYRCEVTYKDKFDSCSFDLEVHEST 106 (113)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEECCC
T ss_pred HCeEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence 9999999999999999999999997543
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1e-13 Score=116.37 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=65.5
Q ss_pred ccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccC--CC-cEEEEEeC--CEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKM--GS-RFHVQHDF--GYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~--~~-~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
..+.+|+++.|.|.+ .|.| .|.|.|+|+|..+.. .. ......++ +...|.|.++..+|+|.|+|.|+|.+|.
T Consensus 13 ~~v~~G~~v~L~C~v--~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 90 (104)
T d2aw2a1 13 HSILAGDPFELECPV--KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 90 (104)
T ss_dssp EEEETTSCEEEEEEE--ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred EEEeCCCeEEEEEEE--EeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence 468899999999999 7998 589999998876642 22 22233322 3457999999999999999999999998
Q ss_pred eEE-EEEEEEEe
Q psy2145 720 AVS-STSLKVKS 730 (808)
Q Consensus 720 ~~~-s~~l~V~~ 730 (808)
..+ ++.|.|..
T Consensus 91 ~~s~~~~l~V~e 102 (104)
T d2aw2a1 91 IESHSTTLYVTD 102 (104)
T ss_dssp EECCCEEEEEEC
T ss_pred EEEEEEEEEEEE
Confidence 654 78888864
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.43 E-value=1.1e-13 Score=113.85 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=68.7
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCc-EEEEEECCEecCCCCC-eEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTL-KVEWFRNEKPLEDSSR-ITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~-~v~W~k~g~~l~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.|.|...+.++ .+.+|+.+.|.|.+ .|.|.+ .|.|+|||+.|..... .....+.+ +|.|.++..+|+|.|+|.
T Consensus 2 ~P~i~~~p~~~-~v~~g~~~~l~C~~--~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~ 76 (94)
T d1biha1 2 YPVLKDQPAEV-LFRENNPTVLECII--EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQCF 76 (94)
T ss_dssp CCEECCCCSEE-EEETTSCEEECCCE--ESCCSSCEEEEEESSSBCCTTTTTEEECTTSC--CEEESSCCGGGCEEEEEE
T ss_pred CCEEEecCCcE-EEeCCCeEEEEEEe--cCCCCeeEEEEEeeeeeeeeecceeeecccce--EEEEeccChhcCeEEEEE
Confidence 58888888776 68999999999999 788865 7999999999976554 33333333 799999999999999999
Q ss_pred EEeCCeeEEE
Q psy2145 581 ATNALGEAVT 590 (808)
Q Consensus 581 a~N~~G~~~~ 590 (808)
|.|..|.+.+
T Consensus 77 a~N~~G~~~s 86 (94)
T d1biha1 77 AETPAGVASS 86 (94)
T ss_dssp EEETTEEEEC
T ss_pred EEeCCCEEEE
Confidence 9999998653
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.43 E-value=1.2e-13 Score=113.55 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=69.3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceE-EEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFT-ETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
.|.|...|.++.+.+|++++|.|.+ .+.|. +.|.|++||..+....... ...+.+ +|.|.++..+|+|.|+|.|
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~--~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a 77 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECII--EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQCFA 77 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCE--ESCCSSCEEEEEESSSBCCTTTTTEEECTTSC--CEEESSCCGGGCEEEEEEE
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEe--cCCCCeeEEEEEeeeeeeeeecceeeecccce--EEEEeccChhcCeEEEEEE
Confidence 6889999999999999999999999 57765 4799999999997655433 333333 7999999999999999999
Q ss_pred EeCceeEEE
Q psy2145 261 VNALGQAVT 269 (808)
Q Consensus 261 ~n~~g~~~~ 269 (808)
.|..|...+
T Consensus 78 ~N~~G~~~s 86 (94)
T d1biha1 78 ETPAGVASS 86 (94)
T ss_dssp EETTEEEEC
T ss_pred EeCCCEEEE
Confidence 999997654
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.43 E-value=2e-13 Score=112.78 Aligned_cols=84 Identities=27% Similarity=0.322 Sum_probs=69.2
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE--EecCceEEEEEccCCCCCcEEEEEEEEeCceeE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE--TNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~--~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 267 (808)
+.++.+.+|+++.|.|.+ .+.|.+.|.|+|||..+........ .......+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 10 ~~~~~~~~G~~v~l~C~~--~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 87 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMY--GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 87 (97)
T ss_dssp CCSEEEETTSCEEEEEEE--ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred CCCEEEecCCeEEEEEEE--EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcE
Confidence 568899999999999999 5889999999999999976544322 233344489999999999999999999999976
Q ss_pred E-EEEEEEE
Q psy2145 268 V-TSGNLLV 275 (808)
Q Consensus 268 ~-~~~~l~V 275 (808)
. .++.|+|
T Consensus 88 ~s~s~~L~V 96 (97)
T d1biha3 88 QKHSLKLTV 96 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 4 4678877
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=6.1e-15 Score=124.25 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=68.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-------eCCEEEEEEccCCCCCcEEEEEEEEeCCc
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQH-------DFGYVTLDITKCVPADSGVYMCKAINRAG 718 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 718 (808)
..+.+|+.++|.|.+. .|+|.|.|.|+|||..+..+.++.... ....+.|.|.++..+|+|.|+|.|+|.+|
T Consensus 12 ~~v~~G~~v~l~C~~~-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G 90 (104)
T d1nbqa2 12 SSATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG 90 (104)
T ss_dssp SEEETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred CEEecCCcEEEEEEee-cCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence 4678899999999873 489999999999999987765443221 12235799999999999999999999999
Q ss_pred ceEEEEEEEEEe
Q psy2145 719 EAVSSTSLKVKS 730 (808)
Q Consensus 719 ~~~~s~~l~V~~ 730 (808)
++..++.|.|+.
T Consensus 91 ~~~~s~~v~v~v 102 (104)
T d1nbqa2 91 TPMTSNAVRMEA 102 (104)
T ss_dssp CCEECCCBCCEE
T ss_pred ceEEEEEEEEEE
Confidence 999888776653
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=3.9e-13 Score=110.80 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=75.2
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEe
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 262 (808)
+|.+ .+.+..+.+|++++|.|.+ .+ +.+.|.|+++|..|..+.++.+....+ +|.|.+++.+|.|.|+|.|.|
T Consensus 5 ~P~i--~~~~~~v~~g~~v~l~C~~--~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v~~~d~G~Y~C~a~N 77 (96)
T d1l6za2 5 QPFL--QVTNTTVKELDSVTLTCLS--ND-IGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISN 77 (96)
T ss_dssp CCCE--ECSCSEECTTSCEEEEECC--CC-SSCEEEEEETTEECCCCTTEEEETTTT--EEEECSCCGGGCEEEEEEEES
T ss_pred CCeE--EcCceEEeCCCeEEEEEcc--CC-CCCCEEEEEeeeecccccceeccCCce--EEEEeccchhhceEEEEEEEe
Confidence 4544 3567889999999999987 34 567999999999999988888776655 799999999999999999999
Q ss_pred CceeEEE-EEEEEEeeCC
Q psy2145 263 ALGQAVT-SGNLLVHSKK 279 (808)
Q Consensus 263 ~~g~~~~-~~~l~V~~~~ 279 (808)
..|...+ .+.|+|..+|
T Consensus 78 ~~g~~~S~~~~L~V~~~P 95 (96)
T d1l6za2 78 PVSVRRSNSIKLDIIFDP 95 (96)
T ss_dssp SSCCEECCCCEEEECCSC
T ss_pred CCCCeEEEeEEEEEEcCC
Confidence 9997754 5889887543
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.2e-13 Score=107.52 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=72.9
Q ss_pred eccCCCceEeecCCeEEEEEEEeecCCCccEEEEEECCEeccCCC--cEEEEeeCcEEEEEEccCCCCCCeEEEEEEEcC
Q psy2145 318 FTQPMRDIHVAENQAAHFEARLIPVGDSKLKVTWLRNGVPIQASN--RVSTMHDFGYVALNFKYTYPEDSGTYTCRAVNE 395 (808)
Q Consensus 318 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 395 (808)
|+.++.+..+.+|+.+.|.|.+ +.|.+.+.|+++|.++..+. ++.+..+++.++|.|.++..+|+|.|+|.|.|
T Consensus 3 i~~~l~~~~v~~G~~v~l~C~v---~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n- 78 (90)
T d1x44a1 3 VTKQLEDTTAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG- 78 (90)
T ss_dssp CSBCCCCEEEETTEEEEEEEEC---SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-
T ss_pred EEcCCCCEEEeCCCcEEEEEEE---CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec-
Confidence 5667889999999999999997 45888999999999987664 47777888889999999999999999999966
Q ss_pred CcceEEEEEEEEEe
Q psy2145 396 LGEAVTSSTLFVES 409 (808)
Q Consensus 396 ~g~~~~~~~l~V~~ 409 (808)
..+++.|+|+.
T Consensus 79 ---~~~~a~l~V~~ 89 (90)
T d1x44a1 79 ---GQSSAKLSVDL 89 (90)
T ss_dssp ---EEEEEEEEEEC
T ss_pred ---ceEEEEEEEEE
Confidence 46678888864
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.40 E-value=4.1e-13 Score=108.21 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=62.8
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcceE
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFAE 135 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 135 (808)
++.. .+.+|++++|.|.+.+ +.|.+.+.|||||..+....+ ...|.|.+++.+|+|.|+|+|.|..|...
T Consensus 7 ~p~~-~v~eG~~v~L~C~~~~-~~p~~~~~W~k~g~~~~~~~~--------~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~ 76 (88)
T d2fcba2 7 TPHL-EFQEGETIVLRCHSWK-DKPLVKVTFFQNGKSKKFSRS--------DPNFSIPQANHSHSGDYHCTGNIGYTLYS 76 (88)
T ss_dssp CSCS-EECTTCCEEEEEEEGG-GCCCEEEEEEETTEEEEEESS--------CCEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred CCCC-eEecCCeEEEEEEecC-CCCCcEEEEEeeccccccccc--------ccccccCccCHHHCCeEEEEEEeCCCCEE
Confidence 3444 6899999999999975 567789999999998764321 22699999999999999999999988654
Q ss_pred -EEEEEEEec
Q psy2145 136 -VQATLQCRG 144 (808)
Q Consensus 136 -~~~~l~V~~ 144 (808)
..+.|+|..
T Consensus 77 S~~v~l~V~~ 86 (88)
T d2fcba2 77 SKPVTITVQA 86 (88)
T ss_dssp CCCEEEEECC
T ss_pred eeeEEEEEeC
Confidence 457777753
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.6e-13 Score=107.19 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=64.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceE-EEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAV-SST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~s~ 724 (808)
..+.+|+.++|.|.+. .+.|...+.|||||+.+..... ...|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus 10 ~~V~eG~~v~L~C~~~-~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v 80 (89)
T d1f2qa2 10 EVVMEGQPLFLRCHGW-RNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEPL 80 (89)
T ss_dssp SEEETTSCEEEEEEEG-GGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred CeEeCCCEEEEEEEec-CCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence 4588999999999994 3446779999999999875432 23799999999999999999999998764 567
Q ss_pred EEEEEeCC
Q psy2145 725 SLKVKSKS 732 (808)
Q Consensus 725 ~l~V~~~p 732 (808)
.|+|..+|
T Consensus 81 ~i~V~~~P 88 (89)
T d1f2qa2 81 NITVIKAP 88 (89)
T ss_dssp EEEEECSC
T ss_pred EEEEEeCC
Confidence 89998876
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8e-13 Score=111.07 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=68.6
Q ss_pred cccCCCceEEEE---EEeeCCCCCcEEEEEECCEecCCCCCeEEEeeC-------cEEEEEECCCCCCCCEEEEEEEEeC
Q psy2145 515 AVEEGKNAHFSC---RLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDF-------GYVAMDLSHVRAEDEGIYICKATNA 584 (808)
Q Consensus 515 ~v~~G~~v~l~C---~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~ 584 (808)
.+..|..+++.| .+ .|.|.|.|.|+|||++|..+.++...... ....|.|.++..+|+|.|+|.|.|.
T Consensus 8 ~~~~g~~~~~~ci~~~v--~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~ 85 (107)
T d1he7a_ 8 QLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85 (107)
T ss_dssp CCCCCCCCCEEEEEEEE--CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred EECCCeEEEEEEEEEEE--EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence 455566666555 78 89999999999999999887766544221 2357999999999999999999999
Q ss_pred CeeEEEEEEEEEEecc
Q psy2145 585 LGEAVTTASMKIKTKA 600 (808)
Q Consensus 585 ~G~~~~s~~l~V~~~~ 600 (808)
.|...+++.|.|..+|
T Consensus 86 ~G~~~~~i~v~v~~~P 101 (107)
T d1he7a_ 86 FGQASASIMAAFMDNP 101 (107)
T ss_dssp TEEEEEEEEECCCSCT
T ss_pred CCEEEEEEEEEEEcCC
Confidence 9999999999988765
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.6e-14 Score=113.62 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=60.5
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
++.+|+.+.|.|.+ .|.|.|+|+|+|||..+.... .+.+++.+|+|.|+|+|.|..|+.+..+.|
T Consensus 15 ~~~~G~~~~l~C~a--~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l 79 (84)
T d2oz4a3 15 TWPENSQQTPMCQA--WGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTREVTV 79 (84)
T ss_dssp EEETTCEECCCCCC--EEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEeCCCEEEEEEEE--eEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEEEEE
Confidence 68899999999999 899999999999998776433 344678899999999999999999999999
Q ss_pred EEEe
Q psy2145 595 KIKT 598 (808)
Q Consensus 595 ~V~~ 598 (808)
.|..
T Consensus 80 ~V~~ 83 (84)
T d2oz4a3 80 NVLS 83 (84)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9874
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.6e-13 Score=112.92 Aligned_cols=92 Identities=13% Similarity=0.260 Sum_probs=70.2
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEECCEecCC---CCCeEEEee--CcEEEEEECCCCCCCCEEE
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLED---SSRITTKHD--FGYVAMDLSHVRAEDEGIY 577 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g~~l~~---~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y 577 (808)
+.|+..+.+. ++.+|+++.|.|.+ .|.| .|.|+|+|++..+.. ........+ .+...|.|.++..+|+|.|
T Consensus 4 ~~fi~~~~~~-~v~~G~~v~L~C~v--~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 80 (104)
T d2aw2a1 4 QLYIKRQSEH-SILAGDPFELECPV--KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSY 80 (104)
T ss_dssp EECCCTTEEE-EEETTSCEEEEEEE--ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEE
T ss_pred cEEEecCCeE-EEeCCCeEEEEEEE--EeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeE
Confidence 4566555555 68999999999999 7888 589999999876642 222222222 2345799999999999999
Q ss_pred EEEEEeCCeeEEE-EEEEEEEe
Q psy2145 578 ICKATNALGEAVT-TASMKIKT 598 (808)
Q Consensus 578 ~C~a~N~~G~~~~-s~~l~V~~ 598 (808)
+|.|.|..|...+ ++.|.|.+
T Consensus 81 ~C~A~N~~G~~~s~~~~l~V~e 102 (104)
T d2aw2a1 81 RCSANFQSNLIESHSTTLYVTD 102 (104)
T ss_dssp EEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEEEEEEE
Confidence 9999999998654 68888864
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-12 Score=110.60 Aligned_cols=91 Identities=16% Similarity=0.315 Sum_probs=72.9
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe----e--------CcEEEEEECCCC
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH----D--------FGYVAMDLSHVR 570 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~----~--------~~~~~L~I~~v~ 570 (808)
+|.|+.+......+.+|+++.|.|.+ .|.|.|.|.|++||..+.......... . .....|.|.+++
T Consensus 1 kP~i~~p~~~~i~v~~G~~v~l~C~v--~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 78 (107)
T d1iray3 1 RPVIVSPANETMEVDLGSQIQLICNV--TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 78 (107)
T ss_dssp CCEEEECCSEEEECCTTCCEEEEEEE--EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred CCCEEEECCCEEEEeCCCEEEEEEEe--ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecc
Confidence 37777777665578899999999999 799999999999999987654322211 0 013579999999
Q ss_pred CCCCE-EEEEEEEeCCeeEEEEEEEE
Q psy2145 571 AEDEG-IYICKATNALGEAVTTASMK 595 (808)
Q Consensus 571 ~~D~G-~Y~C~a~N~~G~~~~s~~l~ 595 (808)
.+|.| .|+|.|.|.+|..+..+.|.
T Consensus 79 ~~D~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 79 SRFYKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred hHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence 99999 59999999999998887775
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=3e-12 Score=105.56 Aligned_cols=89 Identities=21% Similarity=0.412 Sum_probs=70.0
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEee-CCEEcc-CCCceEEE-ecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH-NNVPIK-SGSRFTET-NNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~-~g~~l~-~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
+.+.|....+.+|+++.|.|.+ .+.| .+.|.|+| +|..+. ...++... ...+..+|.|.+++.+|+|.|+|.|+
T Consensus 3 V~i~P~~~~v~~G~~~~l~C~v--~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 80 (97)
T d1epfa1 3 VDIVPSQGEISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT 80 (97)
T ss_dssp EEEESSSEEEETTCCEEEEEEE--CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEEECCCEEEccCCcEEEEEEE--EeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEE
Confidence 5567888899999999999999 5676 47999999 566554 34455543 34566789999999999999999999
Q ss_pred eCceeEE-EEEEEEEe
Q psy2145 262 NALGQAV-TSGNLLVH 276 (808)
Q Consensus 262 n~~g~~~-~~~~l~V~ 276 (808)
|..|... .++.|.|.
T Consensus 81 N~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 81 AEDGTQSEATVNVKIF 96 (97)
T ss_dssp ETTTEEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEEEE
Confidence 9999754 46777764
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.3e-13 Score=111.07 Aligned_cols=73 Identities=11% Similarity=0.171 Sum_probs=60.8
Q ss_pred ccccCCceEEEEE------EEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 646 SEIMEGQSAHYDC------RVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 646 ~~v~~G~~v~l~C------~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+.+..|....|.| .+ .|+|.|.|.|+|||++|..+.+..... ++ .|.|.++..+|+|.|+|.|.|.+|.
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~--~~~p~P~i~W~kdg~~l~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKN--ENNELPKLQWYKDCKPLLLDNIHFSGV-KD--RLIVMNVAEKHRGNYTCHASYTYLG 83 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCB--TTTBCCCCEEEETTEECCCCSSSEEEE-TT--EEEESSCCGGGCEEEEEEEEEEETT
T ss_pred EEEecCCCEEEEcCCcccccc--CCCCCCEEEEEECCccccCCCcEEEec-CC--EEEEcccccccCcEEEEEEEECcCC
Confidence 3567899999999 55 799999999999999998766554443 33 6999999999999999999999885
Q ss_pred eEEE
Q psy2145 720 AVSS 723 (808)
Q Consensus 720 ~~~s 723 (808)
...+
T Consensus 84 ~~~~ 87 (103)
T d1iray2 84 KQYP 87 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.37 E-value=6e-13 Score=107.39 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=62.0
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCcce
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFA 134 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 134 (808)
+++.. .|.+|++++|.|.+.+ +.|.+.+.|||||+.+.... ... .|.|.+++.+|+|.|+|+|.|..|..
T Consensus 8 q~p~~-~v~eG~~v~L~C~~~~-~~p~~~~~W~kng~~~~~~~------~~~--~l~I~~v~~~dsG~Y~C~a~n~~~~~ 77 (89)
T d1fnla2 8 QAPRW-VFKEEDPIHLRCHSWK-NTALHKVTYLQNGKDRKYFH------HNS--DFHIPKATLKDSGSYFCRGLVGSKNV 77 (89)
T ss_dssp ECSCS-EEETTCCEEEEEEECT-TCCCEEEEEEETTEEEEEEE------ECC--CEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ECCCC-eEccCCeEEEEEEecC-CCCCcEEEEEEcccccceec------ccc--ccEECccceeccceEEEEEEeCCCCe
Confidence 34444 6899999999999874 56778999999998876321 122 69999999999999999999988765
Q ss_pred E-EEEEEEEe
Q psy2145 135 E-VQATLQCR 143 (808)
Q Consensus 135 ~-~~~~l~V~ 143 (808)
. ..+.|+|.
T Consensus 78 ~S~~v~itV~ 87 (89)
T d1fnla2 78 SSETVNITIT 87 (89)
T ss_dssp ECCCEEEEEE
T ss_pred EEeeEEEEEE
Confidence 4 45677775
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.5e-13 Score=111.72 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=63.8
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG-SRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSST 724 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s~ 724 (808)
..+.+|+++.|.|.+ .| |.|.+.|++||..|... .++.+.. ++ +|.|.++..+|+|.|+|.|.|.+|..+.+.
T Consensus 7 ~~~~~G~~~~l~C~~--~g-~~~~v~W~~~g~~l~~~~~~~~~~~-~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~ 80 (92)
T d1olza1 7 HFFKHGGTAELKCSQ--KS-NLARVFWKFQNGVLKAESPKYGLMG-RK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ 80 (92)
T ss_dssp EEEETTSCEEECCCC--SC-TTCEEEEEESSSBCCCCSSSBCCTT-TT--CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred eeEeCCCEEEEEEEe--ec-cCCceeeecCcccceeeeeeeecce-ee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence 368899999999998 67 77899999999998764 3444333 33 699999999999999999999999887776
Q ss_pred EEEEE
Q psy2145 725 SLKVK 729 (808)
Q Consensus 725 ~l~V~ 729 (808)
.|.+.
T Consensus 81 ~l~~~ 85 (92)
T d1olza1 81 VVAKH 85 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.35 E-value=2.1e-13 Score=114.31 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=64.1
Q ss_pred eeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 51 YTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 51 ~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
.|...|.+...+.+|+++.|.|.+.. +.|.+.|.|+|||..+... .+.......+ +|.|.+++.+|+|.|+|.|.
T Consensus 5 ~F~~~~~~~v~v~eG~~~~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~ 81 (105)
T d1cs6a2 5 EFSAEERDPVKITEGWGVMFTCSPPP-HYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFAT 81 (105)
T ss_dssp CCCSSCCCCEEEETTSCEEECCCCCS-EESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEEE
T ss_pred cccCCCCCCEEEeCCCeEEEEEEccC-CCCCCEEEEEEeeccccccccceeeeecCCC--EEeecccccccCcEEEEEEE
Confidence 34445544338999999999999843 5788899999999876543 3333333333 69999999999999999999
Q ss_pred ecCcceEEE
Q psy2145 129 NLVGFAEVQ 137 (808)
Q Consensus 129 n~~g~~~~~ 137 (808)
|..|....+
T Consensus 82 N~~g~~~~~ 90 (105)
T d1cs6a2 82 SHIDFITKS 90 (105)
T ss_dssp EEETTEEEE
T ss_pred ECCCCEEEE
Confidence 998887655
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=6.2e-13 Score=112.93 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=62.0
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeE--------EEeeCcEEEEEECCCCCCCCEEEEEEEEeCCe
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRIT--------TKHDFGYVAMDLSHVRAEDEGIYICKATNALG 586 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 586 (808)
.+.+|+++.|.|.+. .|.|.+.|+|+|+|..+....... .........|.|.+++.+|+|.|+|.|.|.+|
T Consensus 13 ~v~~G~~v~L~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G 91 (110)
T d1f97a2 13 SVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 91 (110)
T ss_dssp EEETTSCEEEEEECS-CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred EEecCCeEEEEEEee-cCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence 578999999999983 489999999999999886543322 11222233699999999999999999999999
Q ss_pred eEEEEEEEEEE
Q psy2145 587 EAVTTASMKIK 597 (808)
Q Consensus 587 ~~~~s~~l~V~ 597 (808)
+..++..+.+.
T Consensus 92 ~~~~s~~v~l~ 102 (110)
T d1f97a2 92 TAMRSEAAHMD 102 (110)
T ss_dssp CCEECCCEEEE
T ss_pred cEEEEEEEEEE
Confidence 88775444443
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=8.8e-13 Score=109.18 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=69.3
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC--CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcceEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM--GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEAVSS 723 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s 723 (808)
..+.+|+.+.|.|.+. .|.|.+.|.|||+|..+.. ..+.++...++ +|.|.++..+|+|.|+|.|.|..|....+
T Consensus 12 ~~~~~~e~~~l~C~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~ 88 (101)
T d1iray1 12 LVSSANEIDVRPCPLN-PNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88 (101)
T ss_dssp EEEETTSCEEECCCCC-GGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred EEEeCCCeEEEEeeCC-CCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEE
Confidence 3567899999999884 4889999999999976543 33444444554 79999999999999999999999999999
Q ss_pred EEEEEEeC
Q psy2145 724 TSLKVKSK 731 (808)
Q Consensus 724 ~~l~V~~~ 731 (808)
+.|.|..+
T Consensus 89 ~~L~V~~~ 96 (101)
T d1iray1 89 ISAKFVEN 96 (101)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 99999864
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.33 E-value=1.7e-12 Score=104.58 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=64.5
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCce
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALG 265 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 265 (808)
+++++....+.+|++++|.|.+. .+.|.+.+.|||||..+.... ..+ .|.|.+++.+|+|.|+|+|.|..|
T Consensus 5 Lilq~p~~~v~eG~~v~L~C~~~-~~~p~~~~~W~kng~~~~~~~------~~~--~l~I~~v~~~dsG~Y~C~a~n~~~ 75 (89)
T d1fnla2 5 LLLQAPRWVFKEEDPIHLRCHSW-KNTALHKVTYLQNGKDRKYFH------HNS--DFHIPKATLKDSGSYFCRGLVGSK 75 (89)
T ss_dssp EEEECSCSEEETTCCEEEEEEEC-TTCCCEEEEEEETTEEEEEEE------ECC--CEEESSCCGGGCEEEEEEEEETTE
T ss_pred EEEECCCCeEccCCeEEEEEEec-CCCCCcEEEEEEcccccceec------ccc--ccEECccceeccceEEEEEEeCCC
Confidence 34455566788999999999984 266778999999998875321 112 689999999999999999999988
Q ss_pred eEE-EEEEEEEe
Q psy2145 266 QAV-TSGNLLVH 276 (808)
Q Consensus 266 ~~~-~~~~l~V~ 276 (808)
... ..+.|+|+
T Consensus 76 ~~~S~~v~itV~ 87 (89)
T d1fnla2 76 NVSSETVNITIT 87 (89)
T ss_dssp EEECCCEEEEEE
T ss_pred CeEEeeEEEEEE
Confidence 765 45788875
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.2e-13 Score=118.60 Aligned_cols=94 Identities=27% Similarity=0.411 Sum_probs=73.7
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCC-CCeEEEEEECCEEccCC--CcEEEEEe----CCEEEEEEccCCCCC-c
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGD-PTMRFEWFVNGVELKMG--SRFHVQHD----FGYVTLDITKCVPAD-S 706 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~-P~p~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~I~~v~~~D-~ 706 (808)
+|.|. .+. ...+.+|+.+.|.|.+ .|. |.+.+.|+++|..+..+ .++.+... +..++|.|.++..+| +
T Consensus 7 Pp~i~-~~~-~~~~~~G~~~~l~C~v--~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~ 82 (115)
T d2crya1 7 PPIIS-STQ-TQHALHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 82 (115)
T ss_dssp SCCEE-EEC-CCCCCTTSCCCCCEEE--CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHH
T ss_pred CCEEe-cCC-CEEEecCCEEEEEEEe--ecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCC
Confidence 45554 333 3568899999999999 674 56789999999998764 34444322 124689999999999 7
Q ss_pred EEEEEEEEeCCcceEEEEEEEEEeCC
Q psy2145 707 GVYMCKAINRAGEAVSSTSLKVKSKS 732 (808)
Q Consensus 707 G~Y~C~A~N~~G~~~~s~~l~V~~~p 732 (808)
|.|+|.|+|.+|.++.++.|.|++.+
T Consensus 83 G~Y~C~A~N~~G~~~~~~~L~V~~~~ 108 (115)
T d2crya1 83 TIYNCTAWNSFGSDTEIIRLKEQGSE 108 (115)
T ss_dssp SCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred eEEEEEEEECCCeEEEEEEEEEECCC
Confidence 99999999999999999999997654
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.6e-14 Score=117.37 Aligned_cols=83 Identities=20% Similarity=0.432 Sum_probs=65.7
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEe-------eCcEEEEEECCCCCCCCEEEEEEEEeCCee
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKH-------DFGYVAMDLSHVRAEDEGIYICKATNALGE 587 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 587 (808)
.+.+|+.++|.|.+. .|.|.+.+.|+|||..+....++.... ......|.|.+++.+|+|.|+|.|.|..|+
T Consensus 13 ~v~~G~~v~l~C~~~-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 91 (104)
T d1nbqa2 13 SATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 91 (104)
T ss_dssp EEETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred EEecCCcEEEEEEee-cCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence 578999999999873 489999999999999887654332111 111236999999999999999999999999
Q ss_pred EEEEEEEEEEe
Q psy2145 588 AVTTASMKIKT 598 (808)
Q Consensus 588 ~~~s~~l~V~~ 598 (808)
..+++.|.|..
T Consensus 92 ~~~s~~v~v~v 102 (104)
T d1nbqa2 92 PMTSNAVRMEA 102 (104)
T ss_dssp CEECCCBCCEE
T ss_pred eEEEEEEEEEE
Confidence 98887666653
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.9e-12 Score=103.34 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=65.4
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeE
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQA 267 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 267 (808)
+.+....+.+|++++|.|.+.+ +.+...+.|||||..+...... . .|.|.+++.+|+|.|+|+|.|..|..
T Consensus 5 lq~p~~~V~eG~~v~L~C~~~~-~~~~~~~~w~k~g~~~~~~~~~------~--~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 5 LQASAEVVMEGQPLFLRCHGWR-NWDVYKVIYYKDGEALKYWYEN------H--NISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp EEESCSEEETTSCEEEEEEEGG-GCCEEEEEEEETTEECCSCCCS------S--EEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred EeCCcCeEeCCCEEEEEEEecC-CCCCeEEEEEEeeecccccccc------c--eEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 3455667889999999999952 4567899999999988654321 1 79999999999999999999988865
Q ss_pred E-EEEEEEEeeC
Q psy2145 268 V-TSGNLLVHSK 278 (808)
Q Consensus 268 ~-~~~~l~V~~~ 278 (808)
. ..+.|+|...
T Consensus 76 ~S~~v~i~V~~~ 87 (89)
T d1f2qa2 76 ESEPLNITVIKA 87 (89)
T ss_dssp ECCCEEEEEECS
T ss_pred EeeeEEEEEEeC
Confidence 4 4678888763
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=6.9e-13 Score=107.77 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCC-CeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..+|.|...+..+.+.+|++++|.|.+ .+.| .++|.|+|+|.++....+..... ++ +|.|.+++.+|+|.|+|.
T Consensus 4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~--~g~~~~~~i~W~k~~~~l~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~ 78 (93)
T d1n26a1 4 RRCPAQEVARGVLTSLPGDSVTLTCPG--VEPEDNATVHWVLRKPAAGSHPSRWAGM-GR--RLLLRSVQLHDSGNYSCY 78 (93)
T ss_dssp SCCCCCCCCTTEEEECTTCCEEEECTT--SCTTCCSEEEEEEECSSSSCCCEEEEEE-SS--EEEECSCCGGGCEEEEEE
T ss_pred CCCCcEEeCCCCEEEeCCCcEEEEEEe--ecCCCCceEEEEEccccccceeeEEecC-CC--EEEECCCChhcCEEEEEE
Confidence 457888888999999999999999998 4544 56999999999998766554433 33 799999999999999999
Q ss_pred EEeCceeEEEEEEEEE
Q psy2145 260 AVNALGQAVTSGNLLV 275 (808)
Q Consensus 260 a~n~~g~~~~~~~l~V 275 (808)
|.|..+ .++.|.|
T Consensus 79 a~n~~~---~t~~l~V 91 (93)
T d1n26a1 79 RAGRPA---GTVHLLV 91 (93)
T ss_dssp SSSSCS---CEEEEEE
T ss_pred ECCccc---cEEEEEE
Confidence 987543 3445655
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=6.7e-13 Score=107.82 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCC-CcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDP-TLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICK 580 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 580 (808)
.+|.|..+...+ .+.+|+++.|.|.+ .|.| +++|+|+|+|..+....+.. ..+++ +|.|.+++.+|+|.|+|.
T Consensus 5 ~~P~~~~~~~~v-~~~~G~~v~L~C~~--~g~~~~~~i~W~k~~~~l~~~~~~~-~~~~~--~L~I~~v~~~D~G~Y~C~ 78 (93)
T d1n26a1 5 RCPAQEVARGVL-TSLPGDSVTLTCPG--VEPEDNATVHWVLRKPAAGSHPSRW-AGMGR--RLLLRSVQLHDSGNYSCY 78 (93)
T ss_dssp CCCCCCCCTTEE-EECTTCCEEEECTT--SCTTCCSEEEEEEECSSSSCCCEEE-EEESS--EEEECSCCGGGCEEEEEE
T ss_pred CCCcEEeCCCCE-EEeCCCcEEEEEEe--ecCCCCceEEEEEccccccceeeEE-ecCCC--EEEECCCChhcCEEEEEE
Confidence 468888877766 68899999999998 6765 46999999999997665543 34445 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2145 581 ATNALGEAVTTASMKI 596 (808)
Q Consensus 581 a~N~~G~~~~s~~l~V 596 (808)
|.|..+. ++.|.|
T Consensus 79 a~n~~~~---t~~l~V 91 (93)
T d1n26a1 79 RAGRPAG---TVHLLV 91 (93)
T ss_dssp SSSSCSC---EEEEEE
T ss_pred ECCcccc---EEEEEE
Confidence 9886533 344554
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=6.6e-13 Score=110.38 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=67.2
Q ss_pred CCCccccCCceEEEEEEEeeCCCCC--eEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeCCcce
Q psy2145 643 TGTSEIMEGQSAHYDCRVVPVGDPT--MRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINRAGEA 720 (808)
Q Consensus 643 ~~~~~v~~G~~v~l~C~v~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 720 (808)
..+..+.+|+.++|.|.+. .|.|. +.|.|++||+.|..... ......++|+|..+..+|.|.|+|.|+|.+|..
T Consensus 11 p~~~~v~~G~~~~L~C~v~-g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~ 86 (103)
T d1iama1 11 PLPSWQPVGKQLTLRCQVE-GGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ 86 (103)
T ss_dssp CCCSEECTTSEEEEEEEEE-CCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred CCCceEeCCCEEEEEEEec-CCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEEEeCCCCc
Confidence 3345788999999999994 24565 47899999999864322 112335689999999999999999999999998
Q ss_pred EEEEEEEEEeCC
Q psy2145 721 VSSTSLKVKSKS 732 (808)
Q Consensus 721 ~~s~~l~V~~~p 732 (808)
..+..+.|..+.
T Consensus 87 ~~~~~~~~s~p~ 98 (103)
T d1iama1 87 GLELFENTSAPY 98 (103)
T ss_dssp TSCEEEEECCCE
T ss_pred cCeEeeeEcCCC
Confidence 888888876554
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=1.3e-12 Score=109.03 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=61.4
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC------------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM------------GSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
..+.+|+++.|.|.+ .|.|.|.|.|+|++..+.. ..+... .+ ++|.|.++..+|+|.|+|.|
T Consensus 11 v~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~tL~I~~v~~~D~G~Y~C~a 84 (102)
T d1f97a1 11 VQVPENESIKLTCTY--SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SS--SGITFSSVTRKDNGEYTCMV 84 (102)
T ss_dssp EEEETTCCEEEECEE--ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ET--TEEEESCCCGGGCEEEEEEE
T ss_pred EEEeCCCEEEEEEEc--CCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cC--CEEEEeECCccCCEEEEEEE
Confidence 568899999999999 7999999999986532211 112211 22 27999999999999999999
Q ss_pred EeCCcceEEEEEEEEE
Q psy2145 714 INRAGEAVSSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~ 729 (808)
.|..|....++.|.|.
T Consensus 85 ~n~~g~~~~~~~v~v~ 100 (102)
T d1f97a1 85 SEEGGQNYGEVSIHLT 100 (102)
T ss_dssp EETTSSSEEEEEEEEE
T ss_pred EECCCCEEEEEEEEEE
Confidence 9999998888777765
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.3e-13 Score=113.63 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=63.5
Q ss_pred CccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE----------EEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH----------VQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~----------~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
...+.+|+++.|.|.+ .|.|.|.|.|+|++..+.....+. ....+ .+|.|.++..+|+|.|+|.|.
T Consensus 13 ~v~v~~g~~v~L~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~ 88 (105)
T d1nbqa1 13 EVRIPENNPVKLSCAY--SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGTYTCMVS 88 (105)
T ss_dssp BCCEETTCCCEEECEE--ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSEEEEEEE
T ss_pred eEEEeCCCeEEEEEEe--CCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC--ceEEEecccccceeeEEEEEE
Confidence 3568899999999999 799999999999875443211111 01112 279999999999999999999
Q ss_pred eCCcceEEEEEEEEE
Q psy2145 715 NRAGEAVSSTSLKVK 729 (808)
Q Consensus 715 N~~G~~~~s~~l~V~ 729 (808)
|.+|.+...+.|.|.
T Consensus 89 n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 89 EEGGNSYGEVKVKLI 103 (105)
T ss_dssp ETTSSCEECCEEECC
T ss_pred ECCCCEEEEEEEEEE
Confidence 999999988877764
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.5e-12 Score=105.69 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=62.8
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTASM 594 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 594 (808)
.+.+|+++.|.|.+ .| |.|.+.|+++|+.+...........++ .|.|.+++.+|+|.|+|.|.|..|..+.+..|
T Consensus 8 ~~~~G~~~~l~C~~--~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l 82 (92)
T d1olza1 8 FFKHGGTAELKCSQ--KS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV 82 (92)
T ss_dssp EEETTSCEEECCCC--SC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred eEeCCCEEEEEEEe--ec-cCCceeeecCcccceeeeeeeecceee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence 68999999999998 67 668999999999987654322223334 69999999999999999999999987766665
Q ss_pred EEE
Q psy2145 595 KIK 597 (808)
Q Consensus 595 ~V~ 597 (808)
.+.
T Consensus 83 ~~~ 85 (92)
T d1olza1 83 AKH 85 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.25 E-value=5.8e-12 Score=100.31 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=63.0
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
.||.+...+.+ ..+.+|++++|.|.+ .|.|.+. +.|++||..+..+.. +|.|.++..+|+|.|+|.
T Consensus 4 Pkpvi~~~P~~-~~v~~G~~vtL~C~~--~~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~~~~~d~G~Y~C~ 70 (84)
T d1fnla1 4 PKAVVFLEPQW-YSVLEKDSVTLKCQG--AYSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQ 70 (84)
T ss_dssp CCCEEEEESCC-SEEETTCCEEEEEEC--CCBTTBCCCEEEETTEEEESSCS----------EEEESSCCGGGCEEEEEE
T ss_pred CCCEEEECCCC-cEEeCCCeEEEEEEe--ccCCCCeEEEEeeeceeeeecce----------eeEecCCcccCCEEEEEE
Confidence 45777666654 579999999999999 7888875 667899988875432 799999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy2145 713 AINRAGEAVSSTSLKV 728 (808)
Q Consensus 713 A~N~~G~~~~s~~l~V 728 (808)
|.|..++. .+.|.|
T Consensus 71 a~~s~~S~--~v~L~V 84 (84)
T d1fnla1 71 TNLSTLSD--PVQLEV 84 (84)
T ss_dssp CSSSCCCC--CEEEEE
T ss_pred ccCCCccc--cEEEEC
Confidence 99876644 344443
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.25 E-value=3.5e-12 Score=101.97 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=63.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTM-RFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
||.+...+.. ..+.+|+.++|.|.+ .|.|.+ .+.|++||..+..+.. .|.|.++..+|+|.|+|.|
T Consensus 4 kp~i~~~P~~-~~v~~G~~v~L~C~~--~~~~~~~~~~w~~~g~~~~~~~~----------~l~i~~v~~~dsG~Y~C~a 70 (85)
T d2fcba1 4 KAVLKLEPQW-INVLQEDSVTLTCRG--THSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQT 70 (85)
T ss_dssp BCEEEEESCC-SEEETTCEEEEEEEC--SSCCCTTCCEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEC
T ss_pred CCEEEECCCC-eEEcCCCeEEEEEEE--eeccceeEEEeeccccccccccc----------ceEEeeccccCCcEEEEEC
Confidence 4666655543 578999999999999 788766 6999999999976533 6899999999999999999
Q ss_pred EeCCcceEEEEEEEEE
Q psy2145 714 INRAGEAVSSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~ 729 (808)
.|..++. .+.|.|.
T Consensus 71 ~ns~~S~--~v~l~V~ 84 (85)
T d2fcba1 71 GQTSLSD--PVHLTVL 84 (85)
T ss_dssp TTSBCCC--CEEEEEE
T ss_pred CCCcccc--cEEEEEE
Confidence 9987655 3556553
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.3e-12 Score=101.24 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=61.1
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeE-EEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMR-FEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
||.|...+.. ..+.+|+.++|.|.+ .|.|.+. +.|++||..+..... .|.|.+++.+|+|.|+|.|
T Consensus 1 KP~It~~P~~-~~v~~G~~v~L~C~~--~~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~v~~~d~G~Y~C~a 67 (82)
T d1f2qa1 1 KPKVSLNPPW-NRIFKGENVTLTCNG--NNFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQH 67 (82)
T ss_dssp CCCCEEESSC-SEEETTCCEEEECCT--TCC----CCEEEETTEECSCCSS----------EEEECSCCGGGCEEEEEEC
T ss_pred CCEEEEcCCC-eEEeCCCeEEEEEEE--eeeeeecceeeeeeeeeeecccc----------eeEECCCChhhCCcEEEEe
Confidence 4667776554 568999999999999 7888874 667899998875432 7999999999999999999
Q ss_pred EeCCcceEEEEEEEEE
Q psy2145 714 INRAGEAVSSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~~s~~l~V~ 729 (808)
.|..++. .+.|.|.
T Consensus 68 ~~s~~S~--~v~l~V~ 81 (82)
T d1f2qa1 68 QQVNESE--PVYLEVF 81 (82)
T ss_dssp TTSSCCC--CEEEEEE
T ss_pred cCCCCcc--cEEEEEE
Confidence 9987654 4566664
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=8e-12 Score=103.27 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=67.9
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC--CCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED--SSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEAVTTA 592 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~ 592 (808)
.+.+|+.+.|.|.+. .+.|.+.|.|+|+|..+.. .....+...++ +|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 13 ~~~~~e~~~l~C~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 89 (101)
T d1iray1 13 VSSANEIDVRPCPLN-PNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 89 (101)
T ss_dssp EEETTSCEEECCCCC-GGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEeCCCeEEEEeeCC-CCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEEE
Confidence 567899999999874 4789999999999976543 23333444445 799999999999999999999999999999
Q ss_pred EEEEEec
Q psy2145 593 SMKIKTK 599 (808)
Q Consensus 593 ~l~V~~~ 599 (808)
.|.|...
T Consensus 90 ~L~V~~~ 96 (101)
T d1iray1 90 SAKFVEN 96 (101)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999864
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=7e-12 Score=103.61 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=59.9
Q ss_pred cccCCCceEEEE------EEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEEeCCeeE
Q psy2145 515 AVEEGKNAHFSC------RLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKATNALGEA 588 (808)
Q Consensus 515 ~v~~G~~v~l~C------~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 588 (808)
.+..|....|.| .+ .|+|.|.|.|+|||++|..+.+.....+ + .|.|.++..+|+|.|+|.|.|..|..
T Consensus 10 ~~~~g~~~~l~Cp~~~~~~~--~~~p~P~i~W~kdg~~l~~~~~~~~~~~-~--~L~I~~v~~~D~G~Y~C~a~n~~~g~ 84 (103)
T d1iray2 10 KLPVAGDGGLVCPYMEFFKN--ENNELPKLQWYKDCKPLLLDNIHFSGVK-D--RLIVMNVAEKHRGNYTCHASYTYLGK 84 (103)
T ss_dssp EEESSSCEEEECTTGGGGCB--TTTBCCCCEEEETTEECCCCSSSEEEET-T--EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred EEecCCCEEEEcCCcccccc--CCCCCCEEEEEECCccccCCCcEEEecC-C--EEEEcccccccCcEEEEEEEECcCCE
Confidence 578899999999 55 7999999999999999987665444333 3 69999999999999999999988754
Q ss_pred EEE
Q psy2145 589 VTT 591 (808)
Q Consensus 589 ~~s 591 (808)
..+
T Consensus 85 ~~~ 87 (103)
T d1iray2 85 QYP 87 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=6.4e-12 Score=104.77 Aligned_cols=88 Identities=19% Similarity=0.365 Sum_probs=66.5
Q ss_pred CeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCC------------CCCeEEEeeCcEEEEEECCCCC
Q psy2145 504 PVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLED------------SSRITTKHDFGYVAMDLSHVRA 571 (808)
Q Consensus 504 P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~------------~~~~~~~~~~~~~~L~I~~v~~ 571 (808)
|.+..+..++ .+.+|+++.|.|.+ .|.|.|.|.|+|++..+.. ..+... .++ +|.|.+++.
T Consensus 2 ~sV~t~~~~v-~v~~G~~v~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--tL~I~~v~~ 74 (102)
T d1f97a1 2 GSVYTAQSDV-QVPENESIKLTCTY--SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SSS--GITFSSVTR 74 (102)
T ss_dssp CEEECSCSEE-EEETTCCEEEECEE--ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ETT--EEEESCCCG
T ss_pred CCEEccCCcE-EEeCCCEEEEEEEc--CCCCCCeEEEEeccccceeeeccccccccceeeEEEe--cCC--EEEEeECCc
Confidence 4444555554 68999999999999 7999999999986532211 112211 222 699999999
Q ss_pred CCCEEEEEEEEeCCeeEEEEEEEEEEe
Q psy2145 572 EDEGIYICKATNALGEAVTTASMKIKT 598 (808)
Q Consensus 572 ~D~G~Y~C~a~N~~G~~~~s~~l~V~~ 598 (808)
+|+|.|+|.|.|..|.....+.|+|.+
T Consensus 75 ~D~G~Y~C~a~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 75 KDNGEYTCMVSEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp GGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred cCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence 999999999999999988887777754
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.2e-11 Score=102.70 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=73.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCC--eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNT--MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
..||.+.+.+.+..+.+|+.++|+|.+.+ +.|. +.+.|++++..+..... ........|.|..+..+|+|.|+|
T Consensus 2 ~~P~~v~i~p~~~~v~~G~~~~L~C~v~g-~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC 77 (103)
T d1iama1 2 WTPERVELAPLPSWQPVGKQLTLRCQVEG-GAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSC 77 (103)
T ss_dssp BCCSEEEECCCCSEECTTSEEEEEEEEEC-CBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEE
T ss_pred CCCCceEEeCCCceEeCCCEEEEEEEecC-CCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEE
Confidence 35888888888889999999999999963 4554 57899999999864321 223345589999999999999999
Q ss_pred EEEeCceeEEEEEEEEEee
Q psy2145 259 RAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 259 ~a~n~~g~~~~~~~l~V~~ 277 (808)
+|+|..|....+..+.+..
T Consensus 78 ~A~n~~g~~~~~~~~~~s~ 96 (103)
T d1iama1 78 RTELDLRPQGLELFENTSA 96 (103)
T ss_dssp EEEEECGGGTSCEEEEECC
T ss_pred EEEeCCCCccCeEeeeEcC
Confidence 9999999877777777654
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.3e-12 Score=109.30 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=62.2
Q ss_pred CccccCCceEEEEEEEeeCC-C--CCeEEEEEECCEEccCCCcEEEEE--eCCEEEEEEccCCCCCcEEEEEEEEeCCcc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVG-D--PTMRFEWFVNGVELKMGSRFHVQH--DFGYVTLDITKCVPADSGVYMCKAINRAGE 719 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g-~--P~p~i~W~~~g~~l~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 719 (808)
+..+.+|+.++|.|.+ .| . |.+.|.|||||++|..+....+.. ....+.|.|.....+|.|.|+|.|.|.+|.
T Consensus 11 p~~v~~G~~v~l~C~v--~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~ 88 (106)
T d1zxqa1 11 PTLVAVGKSFTIECRV--PTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS 88 (106)
T ss_dssp SSEECTTSEEEEEEEE--CSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred CCEEeCCCEEEEEEEE--eCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCC
Confidence 4578899999999999 55 4 566999999999987543222211 122457888888888899999999999997
Q ss_pred eEEEEEEEEEe
Q psy2145 720 AVSSTSLKVKS 730 (808)
Q Consensus 720 ~~~s~~l~V~~ 730 (808)
......+.+..
T Consensus 89 ~~~~~~~~~s~ 99 (106)
T d1zxqa1 89 RGGNIFHKHSA 99 (106)
T ss_dssp GTCCEEEEECC
T ss_pred CCCeeEecccC
Confidence 76666666543
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.1e-12 Score=106.15 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=62.3
Q ss_pred cccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCC------------CCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDS------------SRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
.+.+|+++.|.|.+ .|.|.|.|.|+|++..+... .+... .++ +|.|.+++.+|+|.|+|.|.
T Consensus 15 ~v~~g~~v~L~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~a~ 88 (105)
T d1nbqa1 15 RIPENNPVKLSCAY--SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF--LPT--GITFKSVTREDTGTYTCMVS 88 (105)
T ss_dssp CEETTCCCEEECEE--ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE--ETT--EEECSCCCTTSCSEEEEEEE
T ss_pred EEeCCCeEEEEEEe--CCCCCCeeEEEeeeeceeeeeeccceeeccccceeee--cCc--eEEEecccccceeeEEEEEE
Confidence 68999999999999 79999999999987544321 12211 122 69999999999999999999
Q ss_pred eCCeeEEEEEEEEEE
Q psy2145 583 NALGEAVTTASMKIK 597 (808)
Q Consensus 583 N~~G~~~~s~~l~V~ 597 (808)
|..|.....+.|.|.
T Consensus 89 n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 89 EEGGNSYGEVKVKLI 103 (105)
T ss_dssp ETTSSCEECCEEECC
T ss_pred ECCCCEEEEEEEEEE
Confidence 999999888777765
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.3e-12 Score=111.88 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=74.0
Q ss_pred ceeecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc--CcEEEEee----CCeEEEEEcccCcCC-Cee
Q psy2145 50 YYTVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG--HRFRPIHD----FGYVALDIIDTIPED-SGT 122 (808)
Q Consensus 50 ~~~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~--~r~~~~~~----~~~~~L~I~~~~~~D-~G~ 122 (808)
|+++..+..+ .+.+|+.+.|.|.+.+ ..|.+.+.|++++..+..+ .++.+..+ +...+|.|.++..+| +|.
T Consensus 7 Pp~i~~~~~~-~~~~G~~~~l~C~v~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~ 84 (115)
T d2crya1 7 PPIISSTQTQ-HALHGEKGQIKCFIRS-TPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTI 84 (115)
T ss_dssp SCCEEEECCC-CCCTTSCCCCCEEECC-SSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSC
T ss_pred CCEEecCCCE-EEecCCEEEEEEEeec-CCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeE
Confidence 3445567777 8899999999999985 3566789999999998754 34443322 223579999999999 799
Q ss_pred EEEEEEecCcceEEEEEEEEecC
Q psy2145 123 YTCRAVNLVGFAEVQATLQCRGS 145 (808)
Q Consensus 123 Y~C~a~n~~g~~~~~~~l~V~~~ 145 (808)
|+|.|.|..|.++..+.|.|...
T Consensus 85 Y~C~A~N~~G~~~~~~~L~V~~~ 107 (115)
T d2crya1 85 YNCTAWNSFGSDTEIIRLKEQGS 107 (115)
T ss_dssp EEEEEECSSCEEEEEECCCCSCS
T ss_pred EEEEEEECCCeEEEEEEEEEECC
Confidence 99999999999999999988654
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.17 E-value=1.8e-11 Score=97.76 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=64.1
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCC-eEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNT-MKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.|.+...|....+.+|++|+|.|.+ .+.|. ..+.|++||..+..... .|.|.++..+|+|.|+|+|.
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~--~~~~~~~~~~w~~~g~~~~~~~~----------~l~i~~v~~~dsG~Y~C~a~ 71 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRG--THSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTG 71 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEEC--SSCCCTTCCEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEECT
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEE--eeccceeEEEeeccccccccccc----------ceEEeeccccCCcEEEEECC
Confidence 5678888888899999999999999 45554 47899999999875432 58899999999999999998
Q ss_pred eCceeEEEEEEEEEe
Q psy2145 262 NALGQAVTSGNLLVH 276 (808)
Q Consensus 262 n~~g~~~~~~~l~V~ 276 (808)
|..++. .+.|+|.
T Consensus 72 ns~~S~--~v~l~V~ 84 (85)
T d2fcba1 72 QTSLSD--PVHLTVL 84 (85)
T ss_dssp TSBCCC--CEEEEEE
T ss_pred CCcccc--cEEEEEE
Confidence 875543 4566663
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.14 E-value=3.9e-11 Score=95.39 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
.+|.+...|....+.+|++++|.|.+ .+.|.+ .+.|++||..+..... +|.|.+++.+|+|.|+|+|
T Consensus 4 Pkpvi~~~P~~~~v~~G~~vtL~C~~--~~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~~~~~d~G~Y~C~a 71 (84)
T d1fnla1 4 PKAVVFLEPQWYSVLEKDSVTLKCQG--AYSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQT 71 (84)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEEC--CCBTTBCCCEEEETTEEEESSCS----------EEEESSCCGGGCEEEEEEC
T ss_pred CCCEEEECCCCcEEeCCCeEEEEEEe--ccCCCCeEEEEeeeceeeeecce----------eeEecCCcccCCEEEEEEc
Confidence 46888889989999999999999998 466665 4677889887754321 7999999999999999999
Q ss_pred EeCceeEEEEEEEEE
Q psy2145 261 VNALGQAVTSGNLLV 275 (808)
Q Consensus 261 ~n~~g~~~~~~~l~V 275 (808)
.|..++ ..+.|+|
T Consensus 72 ~~s~~S--~~v~L~V 84 (84)
T d1fnla1 72 NLSTLS--DPVQLEV 84 (84)
T ss_dssp SSSCCC--CCEEEEE
T ss_pred cCCCcc--ccEEEEC
Confidence 876543 3345544
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.3e-11 Score=96.25 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=61.9
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCe-EEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTM-KVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.|.|...|....+.+|++|+|.|.+ .+.|.+ .+.|++||..+..... .|.|.+++.+|+|.|+|+|.
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~--~~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~v~~~d~G~Y~C~a~ 68 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNG--NNFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQ 68 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCT--TCC----CCEEEETTEECSCCSS----------EEEECSCCGGGCEEEEEECT
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEE--eeeeeecceeeeeeeeeeecccc----------eeEECCCChhhCCcEEEEec
Confidence 3778888888899999999999999 566665 4667889988865432 69999999999999999998
Q ss_pred eCceeEEEEEEEEEe
Q psy2145 262 NALGQAVTSGNLLVH 276 (808)
Q Consensus 262 n~~g~~~~~~~l~V~ 276 (808)
|..+.. .+.|.|.
T Consensus 69 ~s~~S~--~v~l~V~ 81 (82)
T d1f2qa1 69 QVNESE--PVYLEVF 81 (82)
T ss_dssp TSSCCC--CEEEEEE
T ss_pred CCCCcc--cEEEEEE
Confidence 865533 4566664
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.12 E-value=6.3e-12 Score=105.84 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=61.1
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC-------cEEEEEeCCEEEEEEccCCCCCcE---EEEEEEEeC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-------RFHVQHDFGYVTLDITKCVPADSG---VYMCKAINR 716 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~-------~~~~~~~~~~~~L~I~~v~~~D~G---~Y~C~A~N~ 716 (808)
++.||++++|.|.+. .|.|.|.|.|+|+|..+.... ++.+.. ..+|.|.+++.+|+| .|+|.|+|.
T Consensus 13 t~~EG~~~~L~C~v~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~gd~g~Y~C~A~N~ 88 (111)
T d1biha2 13 TPIEGRPFQLDCVLP-NAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKNA 88 (111)
T ss_dssp CCBTTEEEEECCCCC-EEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred cccCCCeEEEEEEcc-cCCCCCEEEEEeCCccccccccceeeeeeecccc---ccccEEeeeEeeccCCceEEEEEEEeC
Confidence 578999999999863 599999999999987764332 222221 237999999998877 799999999
Q ss_pred CcceEEEEEEEEE
Q psy2145 717 AGEAVSSTSLKVK 729 (808)
Q Consensus 717 ~G~~~~s~~l~V~ 729 (808)
+|.+.....+.+.
T Consensus 89 ~g~~~~~~~~~~i 101 (111)
T d1biha2 89 AVDEEVVLVEYEI 101 (111)
T ss_dssp TCSSCEEEEEEEE
T ss_pred CCCceEEEEEEEe
Confidence 9999777655544
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.4e-11 Score=103.00 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=58.6
Q ss_pred cccCCCceEEEEEEeeCCC--CCcEEEEEECCEecCCCCCeEEE--eeCcEEEEEECCCCCCCCEEEEEEEEeCCeeEEE
Q psy2145 515 AVEEGKNAHFSCRLIPVGD--PTLKVEWFRNEKPLEDSSRITTK--HDFGYVAMDLSHVRAEDEGIYICKATNALGEAVT 590 (808)
Q Consensus 515 ~v~~G~~v~l~C~v~~~g~--P~~~v~W~k~g~~l~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 590 (808)
.+.+|+.++|+|.+. .+. |.+.|+|+|||+.|......... .......|.|.....+|.|.|+|+|.|..|....
T Consensus 13 ~v~~G~~v~l~C~v~-g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~ 91 (106)
T d1zxqa1 13 LVAVGKSFTIECRVP-TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG 91 (106)
T ss_dssp EECTTSEEEEEEEEC-SCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred EEeCCCEEEEEEEEe-CcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence 588999999999994 234 55689999999988643222111 1123446888888888999999999999886554
Q ss_pred EEEEEEE
Q psy2145 591 TASMKIK 597 (808)
Q Consensus 591 s~~l~V~ 597 (808)
...+.+.
T Consensus 92 ~~~~~~s 98 (106)
T d1zxqa1 92 NIFHKHS 98 (106)
T ss_dssp CEEEEEC
T ss_pred eeEeccc
Confidence 4444443
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=1.9e-09 Score=93.36 Aligned_cols=93 Identities=20% Similarity=0.340 Sum_probs=68.5
Q ss_pred CccccCCceEEEEEEEee-CCCCCeEEEEEECCEE-----------cc------CCCcEEEEEe---CCEEEEEEccCCC
Q psy2145 645 TSEIMEGQSAHYDCRVVP-VGDPTMRFEWFVNGVE-----------LK------MGSRFHVQHD---FGYVTLDITKCVP 703 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~-~g~P~p~i~W~~~g~~-----------l~------~~~~~~~~~~---~~~~~L~I~~v~~ 703 (808)
++.+.+|++|+|.|.+.+ .+.....|.|++++.. .. ...|..+..+ .+..+|.|.+++.
T Consensus 11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~ 90 (126)
T d1pkoa_ 11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF 90 (126)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence 356789999999999852 2334567999986531 10 0123333322 3468999999999
Q ss_pred CCcEEEEEEEEeCCcceEEEEEEEEEeCCCcccc
Q psy2145 704 ADSGVYMCKAINRAGEAVSSTSLKVKSKSDIVSE 737 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~G~~~~s~~l~V~~~p~~~~~ 737 (808)
+|+|.|+|.+.|..|..+.++.|.|.++...+.+
T Consensus 91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~p 124 (126)
T d1pkoa_ 91 SDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP 124 (126)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEECTTTTSST
T ss_pred hHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeCC
Confidence 9999999999999999999999999988766554
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.99 E-value=6.1e-11 Score=99.68 Aligned_cols=78 Identities=21% Similarity=0.143 Sum_probs=60.6
Q ss_pred ccCCCCcEEEEEEE-eeCCCCCceEEEEeCCEEeeccC-------cEEEEeeCCeEEEEEcccCcCCCe---eEEEEEEe
Q psy2145 61 NLRERGHAHFECKL-EPVTDSNLKVEWFKNGRPVTIGH-------RFRPIHDFGYVALDIIDTIPEDSG---TYTCRAVN 129 (808)
Q Consensus 61 ~v~~G~~v~l~C~~-~~~~~p~~~v~W~~~g~~l~~~~-------r~~~~~~~~~~~L~I~~~~~~D~G---~Y~C~a~n 129 (808)
++.||+++.|.|.+ . |.|.+.+.|+|+|..+.... ++.... .+ +|.|.+++.+|+| .|+|.|.|
T Consensus 13 t~~EG~~~~L~C~v~~--G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~--~L~i~~v~~~D~gd~g~Y~C~A~N 87 (111)
T d1biha2 13 TPIEGRPFQLDCVLPN--AYPKPLITWKKRLSGADPNADVTDFDRRITAGP-DG--NLYFTIVTKEDVSDIYKYVCTAKN 87 (111)
T ss_dssp CCBTTEEEEECCCCCE--EESCCEEEEEEEETTSCGGGCCCCCCTTEEECT-TS--CEEEEEECGGGCCSSEEEEEEEEC
T ss_pred cccCCCeEEEEEEccc--CCCCCEEEEEeCCccccccccceeeeeeecccc-cc--ccEEeeeEeeccCCceEEEEEEEe
Confidence 67899999999997 6 57999999999887765432 222222 22 6999999999887 69999999
Q ss_pred cCcceEEEEEEEEe
Q psy2145 130 LVGFAEVQATLQCR 143 (808)
Q Consensus 130 ~~g~~~~~~~l~V~ 143 (808)
..|.+.....+.+.
T Consensus 88 ~~g~~~~~~~~~~i 101 (111)
T d1biha2 88 AAVDEEVVLVEYEI 101 (111)
T ss_dssp TTCSSCEEEEEEEE
T ss_pred CCCCceEEEEEEEe
Confidence 99988777655554
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5e-11 Score=97.23 Aligned_cols=78 Identities=14% Similarity=-0.000 Sum_probs=58.6
Q ss_pred ccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC----------CcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG----------SRFHVQHDFGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~----------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
..+..|++|+|.|.+ +.|.+.|.|+++|..+..- .+.++..+....+|+|.+++.+|+|.|+|.|.|
T Consensus 5 v~~~~G~sVtl~c~~---~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n 81 (93)
T d1ccza1 5 IYGVVYGNVTFHVPS---NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (93)
T ss_dssp EEEETTCCEEECCCC---SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred EEEEECCCEEEEecC---CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence 356789999999976 6789999999999876421 111122233445899999999999999999999
Q ss_pred CCcceEEEEEEEE
Q psy2145 716 RAGEAVSSTSLKV 728 (808)
Q Consensus 716 ~~G~~~~s~~l~V 728 (808)
..|.++ +.|+|
T Consensus 82 ~~~t~~--~~l~V 92 (93)
T d1ccza1 82 ITDTMK--FFLYV 92 (93)
T ss_dssp CCSCEE--EEEEE
T ss_pred CCcEEE--EEEEE
Confidence 988665 55554
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.1e-10 Score=93.42 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=56.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeecc----------CcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIG----------HRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~----------~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
.+..|++|+|.|.+. .|.+.|.|++++..+..- .+.+...+....+|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~~~G~sVtl~c~~~---~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~ 82 (93)
T d1ccza1 6 YGVVYGNVTFHVPSN---VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (93)
T ss_dssp EEETTCCEEECCCCS---SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEECCCEEEEecCC---CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence 678999999999764 578899999999877521 1112222334457999999999999999999887
Q ss_pred CcceEEEEEEEE
Q psy2145 131 VGFAEVQATLQC 142 (808)
Q Consensus 131 ~g~~~~~~~l~V 142 (808)
.+..+ ..|+|
T Consensus 83 ~~t~~--~~l~V 92 (93)
T d1ccza1 83 TDTMK--FFLYV 92 (93)
T ss_dssp CSCEE--EEEEE
T ss_pred CcEEE--EEEEE
Confidence 66544 55544
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=1.6e-08 Score=87.24 Aligned_cols=89 Identities=25% Similarity=0.301 Sum_probs=64.2
Q ss_pred ecCceeecCCCeEEEEEEEee-cCCCCeEEEEeeCCEEc-----------c------CCCceEEEe---cCceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIP-VSDNTMKVEWFHNNVPI-----------K------SGSRFTETN---NFGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~-~~~p~~~v~W~~~g~~l-----------~------~~~~~~~~~---~~~~~~L~I~~ 247 (808)
+...+.+.+|++|+|.|.+.+ .+.....|.|++.+... . ...+..... ..+.++|.|.+
T Consensus 8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 87 (126)
T d1pkoa_ 8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN 87 (126)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence 444588899999999999852 23335679999864321 0 011222222 23567999999
Q ss_pred CCCCCcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 248 CLPEDSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
++.+|+|.|.|.+.+..|.....+.|.|..
T Consensus 88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~ 117 (126)
T d1pkoa_ 88 VRFSDEGGYTCFFRDHSYQEEAAVELKVED 117 (126)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence 999999999999999988888888999975
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=1.3e-09 Score=89.13 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=58.4
Q ss_pred cccCCceEEEEEEEeeCCCCCeEEEEEECCEEccC----------CCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKM----------GSRFHVQHDFGYVTLDITKCVPADSGVYMCKAINR 716 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~----------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 716 (808)
....|++|+|.|...+...+...|.|+|++..+.. +.++.+.. + .+|+|.+++.+|+|.|+|.+.|.
T Consensus 6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~-n--gSL~I~nl~~~DsG~Y~c~v~~~ 82 (98)
T d1hnga1 6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-N--GDLKIKNLTRDDSGTYNVTVYST 82 (98)
T ss_dssp EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT-T--SCEEESSCCGGGCEEEEEEEEET
T ss_pred EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECC-C--ccEEEeCCCHHHCEEEEEEEEeC
Confidence 45679999999953222334468999999987742 22333322 2 37999999999999999999999
Q ss_pred Ccce--EEEEEEEEE
Q psy2145 717 AGEA--VSSTSLKVK 729 (808)
Q Consensus 717 ~G~~--~~s~~l~V~ 729 (808)
.|.. +.++.|.|.
T Consensus 83 ~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 83 NGTRILNKALDLRIL 97 (98)
T ss_dssp TCCEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEE
Confidence 9987 456667764
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=5.2e-09 Score=85.35 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=57.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeec----------cCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTI----------GHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~----------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
....|++|+|.|...+.......|.|+|++..|.. +.++.+..+ .+|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n---gSL~I~nl~~~DsG~Y~c~v~~~ 82 (98)
T d1hnga1 6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYST 82 (98)
T ss_dssp EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEET
T ss_pred EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC---ccEEEeCCCHHHCEEEEEEEEeC
Confidence 56689999999964321233457999999987752 223333222 26999999999999999999999
Q ss_pred CcceE--EEEEEEEe
Q psy2145 131 VGFAE--VQATLQCR 143 (808)
Q Consensus 131 ~g~~~--~~~~l~V~ 143 (808)
.|... ..+.|.|+
T Consensus 83 ~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 83 NGTRILNKALDLRIL 97 (98)
T ss_dssp TCCEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEE
Confidence 99874 45556554
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.60 E-value=6.7e-08 Score=80.49 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=54.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+.+|+++ .+.+|++|+|.|.... ......+.||| .|.. |. ...++....+...+.|.|.+++.+
T Consensus 2 ~tQP~sv-sv~~G~~vtl~C~~s~-~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 79 (110)
T d2esvd1 2 TTQPPSM-DCAEGRAANLPCNHST-ISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLR 79 (110)
T ss_dssp CBCCSEE-EEETTSCEEEEEECTT-CCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGG
T ss_pred cCcCCEE-EECCCCCEEEEEEEcC-CCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccC
Confidence 3457788 9999999999999763 23445689998 2321 11 122344444567789999999999
Q ss_pred CCeeEEEEEEec
Q psy2145 119 DSGTYTCRAVNL 130 (808)
Q Consensus 119 D~G~Y~C~a~n~ 130 (808)
|+|.|.|.+...
T Consensus 80 Dsa~YyCa~~~~ 91 (110)
T d2esvd1 80 DTAVYYCIVVRS 91 (110)
T ss_dssp GCEEEEEEEEES
T ss_pred CceEEEEEEeCC
Confidence 999999998744
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=3.2e-08 Score=81.91 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred eeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEcc---------------C----CCceEEEecCceEEEEEccCCCCCc
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIK---------------S----GSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~---------------~----~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..+.+|++|+|.|.. .......+.|+|...... . ..|..+..+ + +|.|.+++.+|+
T Consensus 9 ~~v~~G~~V~L~c~~--~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n-g--SL~I~~v~~~D~ 83 (107)
T d1l6za1 9 PQVAEDNNVLLLVHN--LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN-G--SLLFQMITMKDM 83 (107)
T ss_dssp SSCCTTCCEEEEEES--CCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT-S--CEEECSCCGGGC
T ss_pred CcccCCCCEEEEecC--CCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc-c--cEEEcCCCchhC
Confidence 447799999999985 344467899999543211 0 124444333 3 799999999999
Q ss_pred EEEEEEEEeCce-eEEEEEEEEE
Q psy2145 254 GVYTCRAVNALG-QAVTSGNLLV 275 (808)
Q Consensus 254 G~Y~C~a~n~~g-~~~~~~~l~V 275 (808)
|.|+|.+.+..+ ....++.|.|
T Consensus 84 G~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 84 GVYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEEEEEETTEEECCCCEEECC
T ss_pred EEEEEEEEECCCCEEEEEEEEEE
Confidence 999999988754 4445667765
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=3.3e-08 Score=81.86 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=54.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEee-------------------ccCcEEEEeeCCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVT-------------------IGHRFRPIHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~-------------------~~~r~~~~~~~~~~~L~I~~~~~~D~G 121 (808)
.+.+|++|.|.|...+ .....+.|+|+..... ...|..+..+ .+|.|.+++.+|+|
T Consensus 10 ~v~~G~~V~L~c~~~p--~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n---gSL~I~~v~~~D~G 84 (107)
T d1l6za1 10 QVAEDNNVLLLVHNLP--LALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN---GSLLFQMITMKDMG 84 (107)
T ss_dssp SCCTTCCEEEEEESCC--TTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT---SCEEECSCCGGGCE
T ss_pred cccCCCCEEEEecCCC--CCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc---ccEEEcCCCchhCE
Confidence 4679999999998553 4456899998543211 0135554333 27999999999999
Q ss_pred eEEEEEEecCc-ceEEEEEEEE
Q psy2145 122 TYTCRAVNLVG-FAEVQATLQC 142 (808)
Q Consensus 122 ~Y~C~a~n~~g-~~~~~~~l~V 142 (808)
.|+|++.+..+ ..+.++.|.|
T Consensus 85 ~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 85 VYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEEEEETTEEECCCCEEECC
T ss_pred EEEEEEEECCCCEEEEEEEEEE
Confidence 99999987754 4455666655
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.4e-08 Score=81.87 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=62.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeC-CCCCceEEEEeCC--E---Eee---------ccCcEEEE--eeCCeEEEEEccc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPV-TDSNLKVEWFKNG--R---PVT---------IGHRFRPI--HDFGYVALDIIDT 115 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~-~~p~~~v~W~~~g--~---~l~---------~~~r~~~~--~~~~~~~L~I~~~ 115 (808)
+..|..+ .+.+|++|+|.|..... ......+.|+|.. . .+. ...|+.+. ...+.++|.|.++
T Consensus 3 it~P~~V-~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l 81 (116)
T d1xeda_ 3 IFGPEEV-NSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQL 81 (116)
T ss_dssp SBCCSEE-EEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ccCCCEE-EEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhh
Confidence 5678888 89999999999997531 0123467899833 1 111 12344443 3346689999999
Q ss_pred CcCCCeeEEEEEEecCcceEEEEEEEEec
Q psy2145 116 IPEDSGTYTCRAVNLVGFAEVQATLQCRG 144 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 144 (808)
+.+|+|.|.|.+..........+.|+|..
T Consensus 82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 82 SQDDSGRYKCGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp CGGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred CcCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence 99999999999875544455667888764
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.1e-07 Score=81.45 Aligned_cols=90 Identities=22% Similarity=0.356 Sum_probs=61.8
Q ss_pred EeecCceeecCCCeEEEEEEEeec--CCCCeEEEEeeCCEE----------------cc-----CCCceEEEe---cCce
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPV--SDNTMKVEWFHNNVP----------------IK-----SGSRFTETN---NFGF 240 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~~~g~~----------------l~-----~~~~~~~~~---~~~~ 240 (808)
+.+...+.+.+|++|+|.|.+.+. ......+.|++.+.. .. -..|..... ..+.
T Consensus 8 t~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 87 (124)
T d1eaja_ 8 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGD 87 (124)
T ss_dssp SSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTB
T ss_pred EccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCE
Confidence 333345778899999999998532 222467999872110 00 012333322 2244
Q ss_pred EEEEEccCCCCCcEEEEEEEEeCceeEEEEEEEEEe
Q psy2145 241 VALDIMQCLPEDSGVYTCRAVNALGQAVTSGNLLVH 276 (808)
Q Consensus 241 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 276 (808)
++|.|.+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus 88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 88 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 689999999999999999999998888888888874
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.50 E-value=1.9e-07 Score=76.90 Aligned_cols=74 Identities=27% Similarity=0.481 Sum_probs=55.6
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE-E-e-e---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR-P-V-T---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~-~-l-~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||+. |. + + . ...|+....+...++|.|.++.++|
T Consensus 5 QsP~~l-~~~~G~svtl~C~~s~--~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D 81 (106)
T d1a0ql1 5 QSPSSL-SASLGGKVTITCKASQ--DIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED 81 (106)
T ss_dssp EECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred CcCCEE-EECCCCCEEEEEEcCC--CCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence 347777 8999999999999863 34446999982 21 1 1 1 1346777777788899999999999
Q ss_pred CeeEEEEEEec
Q psy2145 120 SGTYTCRAVNL 130 (808)
Q Consensus 120 ~G~Y~C~a~n~ 130 (808)
+|.|.|.+.+.
T Consensus 82 sA~YyCa~~~~ 92 (106)
T d1a0ql1 82 IATYYCLQYYN 92 (106)
T ss_dssp CSEEEEEECSS
T ss_pred CEeEEEEEeCC
Confidence 99999987643
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=9.2e-08 Score=82.06 Aligned_cols=84 Identities=23% Similarity=0.442 Sum_probs=59.9
Q ss_pred ccccCCceEEEEEEEeeC--CCCCeEEEEEECCEE----------------cc-----CCCcEEEEEe---CCEEEEEEc
Q psy2145 646 SEIMEGQSAHYDCRVVPV--GDPTMRFEWFVNGVE----------------LK-----MGSRFHVQHD---FGYVTLDIT 699 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~--g~P~p~i~W~~~g~~----------------l~-----~~~~~~~~~~---~~~~~L~I~ 699 (808)
..+.+|++|+|.|.+.+. +.....|.|++.+.. .. -.+|+.+..+ .+..+|+|.
T Consensus 14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~ 93 (124)
T d1eaja_ 14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT 93 (124)
T ss_dssp EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence 457799999999998522 122357999973210 00 0123443322 234689999
Q ss_pred cCCCCCcEEEEEEEEeCCcceEEEEEEEEE
Q psy2145 700 KCVPADSGVYMCKAINRAGEAVSSTSLKVK 729 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~N~~G~~~~s~~l~V~ 729 (808)
+++.+|+|.|.|.+.|..|.....+.|.|.
T Consensus 94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 999999999999999999999999999885
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=5.5e-07 Score=75.25 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=55.5
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE-E--e----------eccCcEEEEee--CCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR-P--V----------TIGHRFRPIHD--FGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~-~--l----------~~~~r~~~~~~--~~~~~L~I~~~~ 116 (808)
..|..+ .+.+|++|+|.|.+.. ......+.||| .|. + | ....||.+..+ ...+.|.|.+++
T Consensus 4 qsP~~l-~v~~G~~vtl~C~~~~-~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 4 FYPAWL-TVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EESSEE-EEETTCCEEEEEEESC-CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred ECCCeE-EECCCCCEEEEEEECC-CCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 357777 8999999999999874 23455789998 222 1 1 12356766543 356789999999
Q ss_pred cCCCeeEEEEEEecC
Q psy2145 117 PEDSGTYTCRAVNLV 131 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~ 131 (808)
.+|+|.|.|.+....
T Consensus 82 ~~Dsg~YyCa~~~~~ 96 (114)
T d3bp5a1 82 RNDSGIYLCGAISLH 96 (114)
T ss_dssp GGGCEEEEEEEECSS
T ss_pred cCCCeEEEEEEEeCC
Confidence 999999999987543
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.45 E-value=4e-07 Score=75.64 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=56.9
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+.+|+++ .+.+|++|+|.|.+.+.......+.|||. |. .|. ...|+....+...+.|.|.++..+
T Consensus 4 ltQ~ps~-~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 82 (114)
T d2rhea_ 4 LTQPPSA-SGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESE 82 (114)
T ss_dssp SBCCSEE-EECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred cccCCcE-EeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcc
Confidence 4566677 89999999999998742223457899982 21 121 124677777778889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+..
T Consensus 83 DsA~YyCA~~~ 93 (114)
T d2rhea_ 83 DEADYYCAAWN 93 (114)
T ss_dssp GCEEEEEEEEE
T ss_pred cCceEEEeecC
Confidence 99999998864
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.45 E-value=4.2e-07 Score=76.34 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=56.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee------------ccCcEEEEee--CCeEEEEEc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT------------IGHRFRPIHD--FGYVALDII 113 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~------------~~~r~~~~~~--~~~~~L~I~ 113 (808)
...|..+ .+.+|++|+|.|.... ......+.||| .|+. |. ...|+....+ ...++|+|.
T Consensus 4 tQ~p~~~-~~~~G~~vtL~C~~~~-~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (116)
T d1tvda_ 4 TQSSPDQ-TVASGSEVVLLCTYDT-VYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS 81 (116)
T ss_dssp ECCSCCE-EEETTCCEEECCEEEC-CSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred EccCCCE-EEcCCCCEEEEEEEcC-CccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence 4557777 8999999999999874 33556799997 2221 11 1246665443 355789999
Q ss_pred ccCcCCCeeEEEEEEecCc
Q psy2145 114 DTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~~g 132 (808)
+++.+|+|.|.|.+....+
T Consensus 82 ~~~~~Dsg~YyCa~~~~~~ 100 (116)
T d1tvda_ 82 PVRTEDSATYYCAFTLPPP 100 (116)
T ss_dssp SCCGGGCEEEEEEEECTTT
T ss_pred CccccccccceeeEecCCC
Confidence 9999999999998875543
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=7.9e-07 Score=73.74 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=56.1
Q ss_pred cccCCceEEEEEEEeeCCCCC--eEEEEEECCEEccCCCcEEEE-EeCC---EEEEEEccCCCCCcEEEEEEEEeCCcc-
Q psy2145 647 EIMEGQSAHYDCRVVPVGDPT--MRFEWFVNGVELKMGSRFHVQ-HDFG---YVTLDITKCVPADSGVYMCKAINRAGE- 719 (808)
Q Consensus 647 ~v~~G~~v~l~C~v~~~g~P~--p~i~W~~~g~~l~~~~~~~~~-~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~- 719 (808)
.+.+|+.++|.|.+. .|.|. +.|.|+++|+.+......... ..++ .+.|++.-...+|...|+|.|+|.++.
T Consensus 12 ~l~~G~~~~l~C~v~-~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~ 90 (109)
T d1vcaa1 12 PLEAGKPITVKCSVA-DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 90 (109)
T ss_dssp CEETTSCEEEEEEEE-EEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred CccCCCeEEEEeEeC-CcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCc
Confidence 478999999999996 57884 479999999987531110000 0011 235676654444555899999999765
Q ss_pred ------eEEEEEEEEEeCC
Q psy2145 720 ------AVSSTSLKVKSKS 732 (808)
Q Consensus 720 ------~~~s~~l~V~~~p 732 (808)
..++..|.|...|
T Consensus 91 ~~~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 91 DSVPTVRQAVKELQVYISP 109 (109)
T ss_dssp TTSCSEEEEEEECCEECCC
T ss_pred cccccccceeEEeEEEeCC
Confidence 3445668887654
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.42 E-value=2.6e-07 Score=75.90 Aligned_cols=73 Identities=22% Similarity=0.446 Sum_probs=55.3
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|+... ...|+.....+..++|.|.++..+|
T Consensus 6 QsP~sl-sv~~G~svtl~C~~s~--~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D 82 (106)
T d1i8ka_ 6 QSPASL-SVATGEKVTIRCMTST--DIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED 82 (106)
T ss_dssp EECSEE-ECCTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeCCEE-EECCCCCEEEEEEeCC--CCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence 447777 8999999999998863 3344689997 332211 2357776667778899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+.+
T Consensus 83 sa~YyCa~~~ 92 (106)
T d1i8ka_ 83 VGDYYCLQSF 92 (106)
T ss_dssp CEEEEEEECS
T ss_pred CEEEeEecCc
Confidence 9999998654
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=3.3e-07 Score=75.44 Aligned_cols=73 Identities=18% Similarity=0.408 Sum_probs=56.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EEee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RPVT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+.+|+++ .+.+|++|+|.|.... .....+.|||. | +.|. ...++....++..+.|.|.+++++
T Consensus 4 ltQp~s~-~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~ 80 (106)
T d1lk3l1 4 LTQPPAL-TVSPGEKLTISCKASE--SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEAD 80 (106)
T ss_dssp EECCSEE-EECTTSCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeeCCeE-EECCCCCEEEEEEeCC--CCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChh
Confidence 5567777 9999999999999873 33457899972 2 2221 134777777778889999999999
Q ss_pred CCeeEEEEEE
Q psy2145 119 DSGTYTCRAV 128 (808)
Q Consensus 119 D~G~Y~C~a~ 128 (808)
|+|.|.|.+.
T Consensus 81 Dsa~YyCa~~ 90 (106)
T d1lk3l1 81 DTAIYFCQQS 90 (106)
T ss_dssp GCEEEEEEEC
T ss_pred hCCCcccccc
Confidence 9999999654
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.42 E-value=4.7e-07 Score=75.89 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=53.3
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee----------ccCcEEE--EeeCCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT----------IGHRFRP--IHDFGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~----------~~~r~~~--~~~~~~~~L~I~~~~ 116 (808)
..|..+ .+.+|++|+|.|.... ......+.||| .|.. |. ...++.. ......++|.|.+++
T Consensus 5 Q~~~~v-~v~~G~~VtL~C~~~~-~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (114)
T d2ak4d1 5 QAQTEI-SVVEKEDVTLDCVYET-RDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 82 (114)
T ss_dssp CCCCEE-EEETTCCEEECCEEEC-SCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred ecCCeE-EEeCCCCEEEEEEEcC-CCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence 346666 8999999999998764 33445688998 2221 11 0123333 334567899999999
Q ss_pred cCCCeeEEEEEEecCc
Q psy2145 117 PEDSGTYTCRAVNLVG 132 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~g 132 (808)
.+|+|.|.|.+....+
T Consensus 83 ~~Dsg~YyCa~~~~~~ 98 (114)
T d2ak4d1 83 VVDSAVYFCALSGFYN 98 (114)
T ss_dssp GGGCEEEEEEEECSBT
T ss_pred cccCCCceEeCCCCCC
Confidence 9999999998876543
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=1.2e-06 Score=73.21 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=55.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCE-E--c----------cCCCceEEEe--cCceEEEEEccC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNV-P--I----------KSGSRFTETN--NFGFVALDIMQC 248 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~-~--l----------~~~~~~~~~~--~~~~~~L~I~~~ 248 (808)
++..|..+.+.+|++|+|.|.+.. ......+.||| .|. + | ....++.... ....++|.|.++
T Consensus 2 vtqsP~~l~v~~G~~vtl~C~~~~-~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 80 (114)
T d3bp5a1 2 LTFYPAWLTVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT 80 (114)
T ss_dssp EEEESSEEEEETTCCEEEEEEESC-CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSC
T ss_pred ceECCCeEEECCCCCEEEEEEECC-CCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECcc
Confidence 456778889999999999999842 33456789998 222 1 1 1234555543 335578999999
Q ss_pred CCCCcEEEEEEEEeC
Q psy2145 249 LPEDSGVYTCRAVNA 263 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~ 263 (808)
+++|+|.|.|.+...
T Consensus 81 ~~~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 81 RRNDSGIYLCGAISL 95 (114)
T ss_dssp CGGGCEEEEEEEECS
T ss_pred CcCCCeEEEEEEEeC
Confidence 999999999998754
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.41 E-value=7.5e-07 Score=74.22 Aligned_cols=76 Identities=25% Similarity=0.444 Sum_probs=57.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CC----EEeeccCcEEEEee--CCeEEEEEcccCcCCCeeEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NG----RPVTIGHRFRPIHD--FGYVALDIIDTIPEDSGTYT 124 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g----~~l~~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~ 124 (808)
...|.++ .+.+|++|+|.|.+.........+.||| .| ..+..+.|+....+ ...+.|+|.+++.+|+|.|.
T Consensus 4 ~Q~P~s~-~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 82 (113)
T d1vesa_ 4 DQTPRTA-TKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK 82 (113)
T ss_dssp EEECSEE-EECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EeeCCEE-EEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence 3457777 8999999999999974223456799997 22 23445667766544 34578999999999999999
Q ss_pred EEEEe
Q psy2145 125 CRAVN 129 (808)
Q Consensus 125 C~a~n 129 (808)
|.+..
T Consensus 83 Ca~~~ 87 (113)
T d1vesa_ 83 CQAFY 87 (113)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 99864
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.1e-07 Score=76.12 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=56.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC----CE-Ee---e------------ccCcEEEEeeCCeEEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN----GR-PV---T------------IGHRFRPIHDFGYVALDI 112 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~----g~-~l---~------------~~~r~~~~~~~~~~~L~I 112 (808)
...|.++ .+.+|++|+|.|.+.. ......+.|||. +. .+ . ...|+....+...+.|.|
T Consensus 4 ~~sP~~~-t~~~G~~vtL~C~~~~-~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I 81 (114)
T d1akjd_ 4 RVSPLDR-TWNLGETVELKCQVLL-SNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL 81 (114)
T ss_dssp EEECCSC-CCCTTCCEEEEEEECC-SSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred eECCCcE-eccCCCcEEEEEEeCC-CcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence 4568888 8999999999999874 233446899982 21 11 0 124676666777789999
Q ss_pred cccCcCCCeeEEEEEEe
Q psy2145 113 IDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a~n 129 (808)
.+++.+|+|.|.|.+..
T Consensus 82 ~~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 82 SDFRRENEGYYFCSALS 98 (114)
T ss_dssp SSCCGGGCEEEEEEEEE
T ss_pred ccCCCCCCEEEeEeEcC
Confidence 99999999999999864
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=8e-07 Score=73.68 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=51.9
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---ee---------ccCcEEEEe--eCCeEEEEEcccCcCC
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VT---------IGHRFRPIH--DFGYVALDIIDTIPED 119 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~---------~~~r~~~~~--~~~~~~L~I~~~~~~D 119 (808)
++.+ .+.+|++|+|.|...........+.|||. +.. |. ...|+.+.. +.+.++|.|.+++.+|
T Consensus 3 ~~~v-~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~D 81 (108)
T d1hkfa_ 3 AQVL-QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREED 81 (108)
T ss_dssp CEEE-EECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred CEEE-EEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCC
Confidence 4445 88999999999997642233446789982 211 11 124555443 3577899999999999
Q ss_pred CeeEEEEEEec
Q psy2145 120 SGTYTCRAVNL 130 (808)
Q Consensus 120 ~G~Y~C~a~n~ 130 (808)
+|.|.|.+...
T Consensus 82 sG~Y~C~v~~~ 92 (108)
T d1hkfa_ 82 SGHYWCRIYRP 92 (108)
T ss_dssp CEEEEEEEECT
T ss_pred CEEEEEEEecC
Confidence 99999998754
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.8e-07 Score=74.11 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=62.2
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
.||.+...+.. .|..|++|+|.|.. ..+...+.|+|+|......... ....+..+.+.|.+|...|+|.|+|..
T Consensus 3 PKPsLsa~P~~--~V~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y 76 (95)
T d1olla1 3 PKPFIWAEPHF--MVPKEKQVTICCQG---NYGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 76 (95)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC---CTTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeeCCC--cccCCCcEEEEEec---CCCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEe
Confidence 36877777643 57899999999986 4667889999999653311000 000123468999999999999999999
Q ss_pred EeCCcceE--EEEEEEEE
Q psy2145 714 INRAGEAV--SSTSLKVK 729 (808)
Q Consensus 714 ~N~~G~~~--~s~~l~V~ 729 (808)
.|..+... ....|.|.
T Consensus 77 ~~~~~~S~~Sd~leL~VT 94 (95)
T d1olla1 77 RVGELWSEPSNLLDLVVT 94 (95)
T ss_dssp EETTEECCCCCCEEEEEE
T ss_pred CCCCCccCCCCCEEEEEe
Confidence 98866432 23455553
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.40 E-value=6.1e-07 Score=74.39 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=56.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe------CCEEeeccCcEEEEee--CCeEEEEEcccCcCCCeeEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK------NGRPVTIGHRFRPIHD--FGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~------~g~~l~~~~r~~~~~~--~~~~~L~I~~~~~~D~G~Y~C 125 (808)
..|..+ .+.+|++|+|.|.+.........+.||| ....+..+.|+....+ ...++|.|.+++.+|+|.|.|
T Consensus 4 Q~P~s~-t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 82 (112)
T d1sq2n_ 4 QTPRSV-TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC 82 (112)
T ss_dssp EECSEE-EECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred ecCCEE-EEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence 457777 8999999999999864223456789998 2234445667766544 356799999999999999999
Q ss_pred EEEec
Q psy2145 126 RAVNL 130 (808)
Q Consensus 126 ~a~n~ 130 (808)
.+...
T Consensus 83 A~~~~ 87 (112)
T d1sq2n_ 83 GLGVA 87 (112)
T ss_dssp EECBT
T ss_pred EEecC
Confidence 87643
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.40 E-value=5.6e-07 Score=76.29 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=59.6
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeC--CCCCceEEEEeC--CE----Eee----------c----cCcEEEEee--CCe
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPV--TDSNLKVEWFKN--GR----PVT----------I----GHRFRPIHD--FGY 107 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~--~~p~~~v~W~~~--g~----~l~----------~----~~r~~~~~~--~~~ 107 (808)
++..|..+ .+..|++|+|.|.+... ......|.|+|. +. .+. . ..|+.+..+ .+.
T Consensus 2 vv~~p~~v-~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 80 (119)
T d1neua_ 2 VVYTDREV-YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKD 80 (119)
T ss_dssp EEECCSEE-EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTB
T ss_pred EEcCCCeE-EEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCE
Confidence 35677888 89999999999998631 123458999872 11 111 0 124444322 345
Q ss_pred EEEEEcccCcCCCeeEEEEEEecCc--ceEEEEEEEEe
Q psy2145 108 VALDIIDTIPEDSGTYTCRAVNLVG--FAEVQATLQCR 143 (808)
Q Consensus 108 ~~L~I~~~~~~D~G~Y~C~a~n~~g--~~~~~~~l~V~ 143 (808)
++|.|.+++.+|+|.|.|.+.+..+ .....++|.|.
T Consensus 81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 6899999999999999999987543 33455666663
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.39 E-value=4.1e-07 Score=75.68 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=57.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+.+|+++ .+.+|++|+|.|......-....+.||| .|. .|. ...|+....++..++|.|.+++.+
T Consensus 4 ltQp~s~-~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 82 (111)
T d1rzfl1 4 LTQPPSV-SAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTG 82 (111)
T ss_dssp BBCCSEE-EECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeeCcce-EeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccc
Confidence 3567777 9999999999999864112344699997 221 121 135677777778889999999999
Q ss_pred CCeeEEEEEEec
Q psy2145 119 DSGTYTCRAVNL 130 (808)
Q Consensus 119 D~G~Y~C~a~n~ 130 (808)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (111)
T d1rzfl1 83 DEADYYCGTWDS 94 (111)
T ss_dssp GCSEEEEEEEET
T ss_pred cCcceEEeecCC
Confidence 999999988654
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.38 E-value=3.2e-07 Score=75.22 Aligned_cols=74 Identities=27% Similarity=0.454 Sum_probs=55.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe---e---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV---T---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l---~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+.+|+++ .+.+|++|+|.|.... .....+.||| .|..+ . ...++....+...+.|.|.+++.+
T Consensus 2 ltQp~sl-~~~~G~svtl~C~~~~--~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 78 (103)
T d8faba1 2 LTQPPSV-SVSPGQTARITCSANA--LPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAE 78 (103)
T ss_dssp BBCCSEE-EECTTSCEEEEEECTT--GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGG
T ss_pred CCCCCeE-EECCCCCEEEEEEeCC--CCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchh
Confidence 3567777 8999999999998763 3334689998 22211 1 134666667777889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+.+
T Consensus 79 Dsa~YyCA~~~ 89 (103)
T d8faba1 79 DEADYYCQAWD 89 (103)
T ss_dssp GCEEEEEEEEE
T ss_pred HCceEEeeecC
Confidence 99999998764
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.6e-07 Score=76.43 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=58.8
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC-cEEEEEeCCEEEEEEccCCCCCcEEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGS-RFHVQHDFGYVTLDITKCVPADSGVYMC 711 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 711 (808)
+.||.+...+. ..|..|++|+|.|.. ..+...+.|+|+|....... +...........+.|.+|+.+|+|.|+|
T Consensus 5 lpkPsLsa~P~--~~V~~G~~VTL~C~~---~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C 79 (99)
T d1ucta1 5 FPMPFISAKSS--PVIPLDGSVKIQCQA---IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQC 79 (99)
T ss_dssp SCCCCEEESSC--SEEETTCCEEEEECC---CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEE
T ss_pred CCCCEEEecCC--CceeCCCeEEEEEcC---CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEE
Confidence 45788877654 258889999999986 46678999999874221111 1111111233579999999999999999
Q ss_pred EEEeCCcceEEE
Q psy2145 712 KAINRAGEAVSS 723 (808)
Q Consensus 712 ~A~N~~G~~~~s 723 (808)
...|..+-...|
T Consensus 80 ~y~~~~~~S~~S 91 (99)
T d1ucta1 80 QYRIGHYRFRYS 91 (99)
T ss_dssp EEEETTTEEEEC
T ss_pred EEECCCcccCCC
Confidence 999987744333
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.38 E-value=7.3e-07 Score=73.22 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=55.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||+. |..+ ....++........++|.|.+++++
T Consensus 3 ltQsP~~l~~~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~ 80 (106)
T d1a0ql1 3 LTQSPSSLSASLGGKVTITCKAS--QDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE 80 (106)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred eECcCCEEEECCCCCEEEEEEcC--CCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc
Confidence 44567788899999999999983 444446999982 2111 1234566666666779999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 81 DsA~YyCa~~~ 91 (106)
T d1a0ql1 81 DIATYYCLQYY 91 (106)
T ss_dssp GCSEEEEEECS
T ss_pred CCEeEEEEEeC
Confidence 99999998765
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.38 E-value=5.3e-07 Score=74.22 Aligned_cols=76 Identities=22% Similarity=0.401 Sum_probs=57.0
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
++.+|+++ .+.+|++|+|.|.... .....+.||| .|+. |. ...++....+...++|.|.+++.
T Consensus 3 VltQp~sl-~~~~G~svtl~C~~~~--~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 79 (109)
T d1w72l1 3 VLTQPPSV-SVAPGQTARITCGGNN--IGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEA 79 (109)
T ss_dssp CCBCCSEE-EECTTSCEEEEEECTT--GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeeCCeE-EECCCCCEEEEEEcCC--CCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeecc
Confidence 35667777 8999999999999763 2344689997 2221 21 13466666777888999999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+...
T Consensus 80 ~DsavYyCA~~~~ 92 (109)
T d1w72l1 80 GDEADYYCQVWDS 92 (109)
T ss_dssp GGCEEEEEEEEET
T ss_pred CCCEEEEEEecCC
Confidence 9999999998754
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.38 E-value=6.6e-07 Score=73.60 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=55.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++|+|.|.... .....+.||| .|+. |. ...|+....++..+.|.|.++.++
T Consensus 5 tQ~p~~l-~~~~G~svtl~C~~s~--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~ 81 (107)
T d1mexl1 5 TQSQKFM-STSLGNRVSVTCKASQ--NVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSE 81 (107)
T ss_dssp ECCCSEE-EECTTSCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EcCCCeE-EECCCCCEEEEEEeCC--CCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhee
Confidence 3445666 8999999999999763 3334689997 2221 21 135777777778889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+..
T Consensus 82 DsA~YyCa~~~ 92 (107)
T d1mexl1 82 DLAEYFCQQYN 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred cceeEEEeECC
Confidence 99999998653
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.38 E-value=8.6e-07 Score=74.01 Aligned_cols=77 Identities=22% Similarity=0.451 Sum_probs=55.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEe--eCCeEEEEEcccC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIH--DFGYVALDIIDTI 116 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~--~~~~~~L~I~~~~ 116 (808)
...|.++ .+.+|++|+|.|.+.. .....+.||| .|+. +. ...++.... ....++|.|.+++
T Consensus 4 ~Q~P~~v-~v~~G~sv~L~C~~s~--~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 80 (113)
T d2bnqd1 4 TQIPAAL-SVPEGENLVLNCSFTD--SAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ 80 (113)
T ss_dssp ECSSSEE-EEETTCCEEEEEEESC--CCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EeeCCEE-EEcCCCCEEEEEEEec--CcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC
Confidence 3457777 8999999999999874 4455789998 2221 11 123443332 3466799999999
Q ss_pred cCCCeeEEEEEEecCc
Q psy2145 117 PEDSGTYTCRAVNLVG 132 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~g 132 (808)
.+|+|.|.|.+....+
T Consensus 81 ~~Dsg~YyCa~~~~~~ 96 (113)
T d2bnqd1 81 PGDSATYLCAVRPTSG 96 (113)
T ss_dssp GGGCEEEEEEEEESSS
T ss_pred CCCCcEEeEeEecCCC
Confidence 9999999999985543
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.37 E-value=4.8e-07 Score=74.60 Aligned_cols=73 Identities=19% Similarity=0.387 Sum_probs=55.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|..+. ...|+....+...+.|.|.+++.+|
T Consensus 6 Q~p~~l-~v~~G~~vtL~C~~~~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D 82 (107)
T d1j1pl_ 6 QSPATL-SVTPGNSVSLSCRASQ--SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (107)
T ss_dssp EECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CcCCeE-EECCCCCEEEEEEecC--CCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence 446777 8999999999999863 3345799998 222211 1357777777888899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+.+
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1j1pl_ 83 FGMYFCQQAN 92 (107)
T ss_dssp CEEEEEEECS
T ss_pred CEEEEEEcCC
Confidence 9999997654
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=7.9e-07 Score=71.36 Aligned_cols=90 Identities=10% Similarity=0.074 Sum_probs=62.7
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.+|.+...|..+ |..|++|+|.|.. ..+...+.|+|+|......... ....+....+.|.+++..|+|.|+|...
T Consensus 3 PKPsLsa~P~~~-V~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~ 77 (95)
T d1olla1 3 PKPFIWAEPHFM-VPKEKQVTICCQG---NYGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYR 77 (95)
T ss_dssp CCCEEEEESCSE-EETTCCEEEEEEC---CTTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeeCCCc-ccCCCcEEEEEec---CCCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEeC
Confidence 467888888665 6799999999986 5567789999998754311110 0011233479999999999999999998
Q ss_pred eCceeE--EEEEEEEEe
Q psy2145 262 NALGQA--VTSGNLLVH 276 (808)
Q Consensus 262 n~~g~~--~~~~~l~V~ 276 (808)
+..+.. +...+|.|.
T Consensus 78 ~~~~~S~~Sd~leL~VT 94 (95)
T d1olla1 78 VGELWSEPSNLLDLVVT 94 (95)
T ss_dssp ETTEECCCCCCEEEEEE
T ss_pred CCCCccCCCCCEEEEEe
Confidence 865532 224566664
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.36 E-value=9.8e-07 Score=72.58 Aligned_cols=75 Identities=25% Similarity=0.446 Sum_probs=55.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.|||. |.. | ....++....+...+.|.|.+++++
T Consensus 4 ~tQ~P~sl~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 81 (107)
T d1tjgl1 4 LTQSPSSLSASVGDRITITCRAS--QGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEEC--CCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence 45567788899999999999983 344557899982 221 1 1234566665667789999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 DsA~YyCa~~~ 92 (107)
T d1tjgl1 82 DFATYYCQQLH 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred cCceEEEEECc
Confidence 99999997654
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.1e-07 Score=73.81 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=52.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCE--Eeec------------cCcEEEEe---eCCeEEEEEcccCcCCCeeE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGR--PVTI------------GHRFRPIH---DFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~--~l~~------------~~r~~~~~---~~~~~~L~I~~~~~~D~G~Y 123 (808)
...+|++|+|.|... ......+.|++... .+.. ..|+.... +.+.++|.|.+++.+|+|.|
T Consensus 5 ~~~~G~svtL~C~~s--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y 82 (97)
T d2nxyb1 5 LGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (97)
T ss_dssp EEETTSCEEECCBCS--SSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEcCCcEEEEEEEe--cCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence 678999999999987 35666899998442 2211 12332211 23456899999999999999
Q ss_pred EEEEEecCcceEEEEEEEE
Q psy2145 124 TCRAVNLVGFAEVQATLQC 142 (808)
Q Consensus 124 ~C~a~n~~g~~~~~~~l~V 142 (808)
.|.+.+ ....++|.|
T Consensus 83 ~C~v~~----~~~~v~L~V 97 (97)
T d2nxyb1 83 ICEVED----QKEEVQLLV 97 (97)
T ss_dssp EEEETT----EEEEEEEEE
T ss_pred EEEEec----CCeEEEEEC
Confidence 999954 344555544
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.36 E-value=5.9e-07 Score=75.19 Aligned_cols=74 Identities=22% Similarity=0.427 Sum_probs=53.8
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCC--E---Eee---------ccCcEEEEe--eCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNG--R---PVT---------IGHRFRPIH--DFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g--~---~l~---------~~~r~~~~~--~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|.... .....+.|||.. . .|. ...|+.... ....++|.|.+++.
T Consensus 5 Q~P~~~-~~~~G~~vtL~C~~~~--~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~ 81 (114)
T d2cdea1 5 QSPQSL-IILEGKNCTLQCNYTV--SPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL 81 (114)
T ss_dssp EECSEE-EEETTCCCEEEEEECC--SCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred eeCCEE-EEeCCCCEEEEEEEcC--CCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence 347777 8999999999999873 455679999721 1 111 123454432 33567899999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 82 SDSASYICVVSDR 94 (114)
T ss_dssp GGCSEEEEEEECS
T ss_pred hhCcccceeeecC
Confidence 9999999999864
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.35 E-value=9.8e-07 Score=72.28 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=54.5
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|.. .......+.||| .|+.+ ....++..........|.|.+++++
T Consensus 4 ltQ~P~s~~~~~G~svtl~C~~--s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 81 (107)
T d1c5cl1 4 LTQSPSSLSASLGERVSLTCRT--SQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEE--SSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEccCCEEEECCCCCEEEEEEe--CCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhccc
Confidence 3456777889999999999998 344555689998 33221 1233455554555679999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCa~~~ 92 (107)
T d1c5cl1 82 DFADYYCLQYA 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred CCeEEEEecCc
Confidence 99999998754
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.35 E-value=1.4e-06 Score=71.78 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=56.1
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.|||. |+.+ ....++....+....+|.|.+++++
T Consensus 4 ~tQ~p~~l~v~~G~~vtL~C~~~--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~ 81 (107)
T d1j1pl_ 4 LTQSPATLSVTPGNSVSLSCRAS--QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EECcCCeEEECCCCCEEEEEEec--CCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcC
Confidence 34567778899999999999984 344456999982 2221 1234666666667789999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCa~~~ 92 (107)
T d1j1pl_ 82 DFGMYFCQQAN 92 (107)
T ss_dssp GCEEEEEEECS
T ss_pred CCEEEEEEcCC
Confidence 99999998754
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=5.5e-07 Score=74.06 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=55.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|.. |. ...|+....+...+.|.|.++..+|
T Consensus 6 QsP~~l-tv~~G~svtl~C~~s~--~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D 82 (107)
T d1ospl1 6 QSSSSF-SVSLGDRVTITCKASE--DIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED 82 (107)
T ss_dssp CCCSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred eeCCEE-EECCCCCEEEEEecCC--CcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence 457777 8999999999999874 3334699998 2221 11 1357777666677899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1ospl1 83 VATYFCQQYW 92 (107)
T ss_dssp CSEEEEEECS
T ss_pred CCcEEEeecc
Confidence 9999998754
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=8.7e-07 Score=72.70 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=55.3
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||| .|+.. ....++.....+...+|.|.+++.+
T Consensus 4 ltQsP~slsv~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~ 81 (106)
T d1i8ka_ 4 LTQSPASLSVATGEKVTIRCMTS--TDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSE 81 (106)
T ss_dssp EEEECSEEECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEeC--CCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccc
Confidence 34567778899999999999983 44445689997 23221 1234666655666778999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCa~~~ 92 (106)
T d1i8ka_ 82 DVGDYYCLQSF 92 (106)
T ss_dssp GCEEEEEEECS
T ss_pred cCEEEeEecCc
Confidence 99999998654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.33 E-value=8.5e-07 Score=72.96 Aligned_cols=74 Identities=20% Similarity=0.401 Sum_probs=55.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|.++ .+.+|++|+|.|.... .....+.||| .|+ .|. ...|+....++..+.|.|.++.++
T Consensus 5 tQ~P~sl-~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 81 (107)
T d1tjgl1 5 TQSPSSL-SASVGDRITITCRASQ--GVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE 81 (107)
T ss_dssp EEECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeeCCEE-EECCCCCEEEEEEECC--CCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence 3457787 8999999999999873 3345788998 222 221 134666666777889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+.+
T Consensus 82 DsA~YyCa~~~ 92 (107)
T d1tjgl1 82 DFATYYCQQLH 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred cCceEEEEECc
Confidence 99999997654
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=1.1e-06 Score=74.23 Aligned_cols=77 Identities=18% Similarity=0.395 Sum_probs=56.1
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc----------------------CCCceEEE-ec
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK----------------------SGSRFTET-NN 237 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~----------------------~~~~~~~~-~~ 237 (808)
+|.+...|..+.+.+|++|+|.|.+. +.....+.||| .|..+. ...++... ..
T Consensus 1 a~~~~~~P~~~~~~~G~~vtL~C~~~--~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 78 (122)
T d1nezg_ 1 APELRIFPKKMDAELGQKVDLVCEVL--GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT 78 (122)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEE--SCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET
T ss_pred CCceEEcCCEEEECCCCCEEEEEEEc--CccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC
Confidence 47788889999999999999999984 55566799998 222110 01122222 23
Q ss_pred CceEEEEEccCCCCCcEEEEEEEE
Q psy2145 238 FGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 238 ~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
+..++|+|.+++.+|+|.|.|.+.
T Consensus 79 ~~~~~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 79 NNKYVLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEeEEEEcccccCCCEEEEeeEe
Confidence 345689999999999999999875
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.33 E-value=6.2e-07 Score=73.50 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=55.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|.++ .+.+|++|+|.|.... .....+.||| .|+.+. ...++........+.|.|.+++.+
T Consensus 5 tQ~P~s~-~~~~G~svtl~C~~s~--~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 81 (107)
T d1c5cl1 5 TQSPSSL-SASLGERVSLTCRTSQ--EISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESE 81 (107)
T ss_dssp EEECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EccCCEE-EECCCCCEEEEEEeCC--CCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhccc
Confidence 3457777 8999999999999873 4455699998 332211 124566566667789999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCa~~~ 92 (107)
T d1c5cl1 82 DFADYYCLQYA 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred CCeEEEEecCc
Confidence 99999997654
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.33 E-value=9.4e-07 Score=72.63 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=54.8
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLPED 252 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D 252 (808)
+..|..+.+.+|++|+|.|... +.....+.||| .|..+ ....++........+.|.|.+++++|
T Consensus 5 tQsP~~ltv~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D 82 (107)
T d1ospl1 5 SQSSSSFSVSLGDRVTITCKAS--EDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED 82 (107)
T ss_dssp ECCCSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred EeeCCEEEECCCCCEEEEEecC--CCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence 3456678899999999999984 33344689998 22211 12346666666666799999999999
Q ss_pred cEEEEEEEEe
Q psy2145 253 SGVYTCRAVN 262 (808)
Q Consensus 253 ~G~Y~C~a~n 262 (808)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1ospl1 83 VATYFCQQYW 92 (107)
T ss_dssp CSEEEEEECS
T ss_pred CCcEEEeecc
Confidence 9999998764
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=8.9e-07 Score=73.99 Aligned_cols=76 Identities=21% Similarity=0.401 Sum_probs=56.1
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC----CE-Ec---------------cCCCceEEEecCceEEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN----NV-PI---------------KSGSRFTETNNFGFVALDI 245 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~----g~-~l---------------~~~~~~~~~~~~~~~~L~I 245 (808)
+...|.+.++.+|++|+|.|.+.. ......+.|||. +. .+ ....++.........+|.|
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~-~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I 81 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLL-SNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL 81 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECC-SSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred eeECCCcEeccCCCcEEEEEEeCC-CcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence 566888999999999999999852 333446899982 11 11 0123555555666778999
Q ss_pred ccCCCCCcEEEEEEEEe
Q psy2145 246 MQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n 262 (808)
.+++.+|+|.|.|.+..
T Consensus 82 ~~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 82 SDFRRENEGYYFCSALS 98 (114)
T ss_dssp SSCCGGGCEEEEEEEEE
T ss_pred ccCCCCCCEEEeEeEcC
Confidence 99999999999999864
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.32 E-value=1.7e-06 Score=71.22 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=54.6
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPED 252 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~D 252 (808)
+..|..+.+.+|++|+|.|... ......+.|||. |.. | ....++..........|.|.+++.+|
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D 82 (107)
T d1kcvl1 5 TQSPKSMGMSVGEAVTLNCKAS--ENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD 82 (107)
T ss_dssp EESCSEEEEETTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred ECcCCEEeECCCCCEEEEEEec--CCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence 4456678899999999999984 444456999982 221 1 12345666666667789999999999
Q ss_pred cEEEEEEEEe
Q psy2145 253 SGVYTCRAVN 262 (808)
Q Consensus 253 ~G~Y~C~a~n 262 (808)
+|.|.|.+..
T Consensus 83 Sa~YyCa~~~ 92 (107)
T d1kcvl1 83 DADYYCGQSY 92 (107)
T ss_dssp CEEEEEEECS
T ss_pred CceEEEEecC
Confidence 9999998754
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.4e-07 Score=75.37 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=49.6
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEE-EeeCCeEEEEEcccCcCCCeeEEEEEEecCcce
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP-IHDFGYVALDIIDTIPEDSGTYTCRAVNLVGFA 134 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 134 (808)
.|..|++|+|.|... .+...+.|+|+|........... ........+.|.+++.+|+|.|+|...+.....
T Consensus 17 ~V~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S 88 (99)
T d1ucta1 17 VIPLDGSVKIQCQAI---REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRF 88 (99)
T ss_dssp EEETTCCEEEEECCC---TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred ceeCCCeEEEEEcCC---CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCccc
Confidence 588999999999876 46679999997753222111111 112233479999999999999999998876533
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.31 E-value=5e-07 Score=75.69 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=52.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee---------ccCcEEEEe--eCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT---------IGHRFRPIH--DFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~---------~~~r~~~~~--~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|.... .....+.|||. |. .|. ...++.... ....+.|.|.++++
T Consensus 6 Q~~~~v-~v~~G~~vtL~C~~~~--~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1lp9e1 6 QTEGLV-TLTEGLPVMLNCTYQS--TYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL 82 (115)
T ss_dssp ECCSEE-EEETTSCEEECEEEEC--SSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred cCCCeE-EECCCCCEEEEEEEeC--CCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc
Confidence 345566 8999999999999884 34557999982 22 111 123444432 23456799999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+...
T Consensus 83 ~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 83 SDSALYYCALFLA 95 (115)
T ss_dssp GGCEEEEEEEEEC
T ss_pred ccCccceEEEEcC
Confidence 9999999988654
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.31 E-value=2e-06 Score=70.54 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=55.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||+. |+. | ....++....+.....|.|.+++++
T Consensus 3 ltQ~P~sl~~~~G~svtL~C~~~--~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~ 80 (106)
T d1op3k1 3 MTQSPSTLSASVGDTITITCRAS--QSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFD 80 (106)
T ss_dssp EEEECSEEEECTTCEEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeC--CCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEcccccc
Confidence 34567788999999999999984 444456899982 221 1 1234666666667778999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 81 Dsa~YyCa~~~ 91 (106)
T d1op3k1 81 DFATYHCQHYA 91 (106)
T ss_dssp GCSEEEEEEEC
T ss_pred CCCcEeeeeCC
Confidence 99999998764
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.31 E-value=1.7e-06 Score=71.66 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=55.8
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--C----EEccCCCceEEEec--CceEEEEEccCCCCCcEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--N----VPIKSGSRFTETNN--FGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g----~~l~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~ 257 (808)
+...|..+.+.+|++|+|.|.+.........+.|||. | ..+..+.++....+ ...++|.|.+++++|+|.|.
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 81 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR 81 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence 4556778889999999999998532334567899982 2 23334445554433 34678999999999999999
Q ss_pred EEEEe
Q psy2145 258 CRAVN 262 (808)
Q Consensus 258 C~a~n 262 (808)
|.+..
T Consensus 82 CA~~~ 86 (112)
T d1sq2n_ 82 CGLGV 86 (112)
T ss_dssp EEECB
T ss_pred EEEec
Confidence 98754
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.30 E-value=8e-07 Score=72.84 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=52.5
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... ....+.|||. |. .+. ...++....+...++|.|.++..+|
T Consensus 5 QsP~~l-~~~~G~~vtl~C~~s~---~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 80 (104)
T d1yqvl1 5 QSPAIM-SASPGEKVTMTCSASS---SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETED 80 (104)
T ss_dssp EESSEE-EECTTCCEEEEEEESS---CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CcCCeE-EECCCCCEEEEEEeCC---CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCccc
Confidence 457777 8999999999998753 3345789982 21 111 1245666666777899999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
+|.|.|.+.
T Consensus 81 sa~YyCa~~ 89 (104)
T d1yqvl1 81 AATYYCQQW 89 (104)
T ss_dssp CEEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999764
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.30 E-value=8.8e-07 Score=73.05 Aligned_cols=74 Identities=20% Similarity=0.396 Sum_probs=56.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EEee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RPVT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++|+|.|.... .....+.|||. | ..|. ...++....+...+.|.|.+++.+
T Consensus 5 tQsP~~l-~v~~G~svtl~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 81 (107)
T d1kcvl1 5 TQSPKSM-GMSVGEAVTLNCKASE--NVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAD 81 (107)
T ss_dssp EESCSEE-EEETTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred ECcCCEE-eECCCCCEEEEEEecC--CcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheec
Confidence 3557777 8999999999999874 33446999972 2 1121 135677667778889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+..
T Consensus 82 DSa~YyCa~~~ 92 (107)
T d1kcvl1 82 DDADYYCGQSY 92 (107)
T ss_dssp GCEEEEEEECS
T ss_pred CCceEEEEecC
Confidence 99999998753
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.30 E-value=7.9e-07 Score=73.19 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=56.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+.+|.++ .+.+|++|+|.|.... .....+.||| .|+. |. ...|+....+...+.|.|.+++.+
T Consensus 3 ltQP~s~-~~~~G~svtl~C~~~~--~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~ 79 (108)
T d1nfde1 3 LIQPSSA-SVTVGETVKITCSGDQ--LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPE 79 (108)
T ss_dssp EECCSEE-EEETTSCCCEEEEETT--GGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGG
T ss_pred eECCCee-EECCCCCEEEEEECCC--CCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCcccc
Confidence 4568887 8999999999998753 2334688998 2322 11 124777777778889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+..
T Consensus 80 Dsa~YyCA~~~ 90 (108)
T d1nfde1 80 DEAAYYCLSSY 90 (108)
T ss_dssp GCSEEEEEEEE
T ss_pred CCceEEEEeec
Confidence 99999998864
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.30 E-value=2.7e-06 Score=70.71 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=56.3
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCE----EccCCCceEEEe--cCceEEEEEccCCCCCcEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNV----PIKSGSRFTETN--NFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~----~l~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
+...|..+.+.+|++|+|.|.+.....+...+.||| .|. .+....++.... .....+|.|.+++.+|+|.|.
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 82 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence 455678889999999999999853334556799998 222 233344554443 234568999999999999999
Q ss_pred EEEEe
Q psy2145 258 CRAVN 262 (808)
Q Consensus 258 C~a~n 262 (808)
|.+..
T Consensus 83 Ca~~~ 87 (113)
T d1vesa_ 83 CQAFY 87 (113)
T ss_dssp EEEEE
T ss_pred eeeec
Confidence 99864
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.29 E-value=6.4e-07 Score=73.72 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=54.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++|+|.|.... .....+.||| .|+.+. ...++....+...++|.|.+++.+
T Consensus 5 tQsP~s~-~~~~G~~vtl~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~ 81 (107)
T d3cx5k1 5 TQTPVSL-AASLGDRVTISCRASQ--DINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPE 81 (107)
T ss_dssp EEESTTC-CBCSSSCCEEEEEESS--CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSC
T ss_pred ECcCCEE-EECCCCCEEEEEEcCC--CcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeec
Confidence 3457787 8999999999999763 4455689997 332211 124566566677789999999999
Q ss_pred CCeeEEEEEE
Q psy2145 119 DSGTYTCRAV 128 (808)
Q Consensus 119 D~G~Y~C~a~ 128 (808)
|+|.|.|.+.
T Consensus 82 Dsa~YyCa~~ 91 (107)
T d3cx5k1 82 DIATYFCQHH 91 (107)
T ss_dssp CCSEEEEEEC
T ss_pred CCCcEEeeeC
Confidence 9999999764
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.29 E-value=1.7e-06 Score=73.26 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=57.6
Q ss_pred EeecCceeecCCCeEEEEEEEeec--CCCCeEEEEeeC--CE----Ec---------c-C----CCceEEEe--cCceEE
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPV--SDNTMKVEWFHN--NV----PI---------K-S----GSRFTETN--NFGFVA 242 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~~~--g~----~l---------~-~----~~~~~~~~--~~~~~~ 242 (808)
+..+..+.+..|++|+|.|.+... ......+.|++. +. .+ . . ..|+.... ..+.++
T Consensus 3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 82 (119)
T d1neua_ 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS 82 (119)
T ss_dssp EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence 446677889999999999998521 223458999872 11 11 0 0 12333321 234468
Q ss_pred EEEccCCCCCcEEEEEEEEeCce--eEEEEEEEEEe
Q psy2145 243 LDIMQCLPEDSGVYTCRAVNALG--QAVTSGNLLVH 276 (808)
Q Consensus 243 L~I~~~~~~D~G~Y~C~a~n~~g--~~~~~~~l~V~ 276 (808)
|.|.+++.+|+|.|.|.+.+..+ .....+.|.|.
T Consensus 83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 99999999999999999998543 33445666663
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=5.3e-07 Score=76.67 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=54.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCC-----CCCceEEEEeCCEEee--------c---------cCcEEEEee--CCeE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVT-----DSNLKVEWFKNGRPVT--------I---------GHRFRPIHD--FGYV 108 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~-----~p~~~v~W~~~g~~l~--------~---------~~r~~~~~~--~~~~ 108 (808)
+..|.++ +|.+|++|+|.|.+.... .....+.|++.+..-. . ..|+.+..+ .+.+
T Consensus 5 ~~~~~sv-tv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 83 (121)
T d2g5ra1 5 LTMQSSV-TVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNC 83 (121)
T ss_dssp EECCSEE-EECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBC
T ss_pred EEeCCEE-EEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEE
Confidence 4567888 999999999999986211 1224688998542110 0 235665543 4567
Q ss_pred EEEEcccCcCCCeeEEEEEEec
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
+|.|.+++.+|+|.|.|++...
T Consensus 84 sL~I~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 84 TLSIRDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp CEEECSCCGGGCEEEEEEEEET
T ss_pred EEEECCCChHHCEEEEEEEEeC
Confidence 8999999999999999999753
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.28 E-value=1.3e-06 Score=72.63 Aligned_cols=73 Identities=27% Similarity=0.467 Sum_probs=51.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---ee---------ccCcEEEE--eeCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VT---------IGHRFRPI--HDFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~---------~~~r~~~~--~~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|.... .....+.|||. |.. +. ...++... .....++|.|.++..
T Consensus 4 Q~P~~~-~~~~G~~vtl~C~~~~--~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (110)
T d1u3ha1 4 QSPQSL-TVWEGETAILNCSYEN--SAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP 80 (110)
T ss_dssp CSCSSE-EEETTSCEEEEEEECC--TTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT
T ss_pred ecCCEE-EEcCCCCEEEEEEecC--CCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC
Confidence 447777 8999999999999873 33446899982 221 11 11233332 334567899999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|+|.|.|.+..
T Consensus 81 ~Dsa~YyCa~~~ 92 (110)
T d1u3ha1 81 GDSATYFCAASA 92 (110)
T ss_dssp TSCSEEEECCEE
T ss_pred CCceeEeeeecC
Confidence 999999998864
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.28 E-value=9.3e-07 Score=74.19 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=53.3
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee-------------ccCcEEEEe--eCCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT-------------IGHRFRPIH--DFGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~-------------~~~r~~~~~--~~~~~~L~I~~~~ 116 (808)
..|..+ .+.+|++|+|.|.... ......+.||| .|..+. ...++.... ....+.|.|.+++
T Consensus 4 Q~p~~v-~~~~G~~Vtl~C~~~~-~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 4 QTQTSI-SVMEKTTVTMDCVYET-QDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp CCCCEE-EEETTCCEEECCEECC-CCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred ccCCEE-EEcCCCCEEEEEEEcC-CCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 446677 8999999999999864 33445688998 222111 113455443 3456789999999
Q ss_pred cCCCeeEEEEEEec
Q psy2145 117 PEDSGTYTCRAVNL 130 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~ 130 (808)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 82 IEDSAVYFCAMRGD 95 (115)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccccccccceeecC
Confidence 99999999998744
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.4e-06 Score=70.71 Aligned_cols=73 Identities=26% Similarity=0.401 Sum_probs=50.4
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEE--ecCceEEEEEccCCCCCcE
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTET--NNFGFVALDIMQCLPEDSG 254 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~--~~~~~~~L~I~~~~~~D~G 254 (808)
+.+.+.+|++|+|.|...........+.|||. +.. | ....++.+. ...+.++|.|.+++.+|+|
T Consensus 4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG 83 (108)
T d1hkfa_ 4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG 83 (108)
T ss_dssp EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence 44678899999999987432333456789982 211 1 112334333 3457789999999999999
Q ss_pred EEEEEEEeC
Q psy2145 255 VYTCRAVNA 263 (808)
Q Consensus 255 ~Y~C~a~n~ 263 (808)
.|.|.+...
T Consensus 84 ~Y~C~v~~~ 92 (108)
T d1hkfa_ 84 HYWCRIYRP 92 (108)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEecC
Confidence 999998754
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.28 E-value=2.6e-06 Score=69.83 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=54.5
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||+. |.. | ....++....++..++|.|.+++++
T Consensus 4 vtQ~P~~l~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~ 81 (108)
T d1jhll_ 4 LTQSPSYLVASPGETITINCRAS--KSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE 81 (108)
T ss_dssp EEEECSEEEECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred EEccCCeEEecCCCCEEEEEEcc--CCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEec
Confidence 34567778899999999999984 344456999982 211 1 1123445555666678999999999
Q ss_pred CcEEEEEEEEeC
Q psy2145 252 DSGVYTCRAVNA 263 (808)
Q Consensus 252 D~G~Y~C~a~n~ 263 (808)
|+|.|.|.+.+.
T Consensus 82 Dsa~YyCA~~~~ 93 (108)
T d1jhll_ 82 DFAMYICQQHNE 93 (108)
T ss_dssp CCSEEEEEECSS
T ss_pred cceEEEEeeCCC
Confidence 999999976553
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.27 E-value=1.1e-06 Score=72.19 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=55.6
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EEee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RPVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||+. | +.|. ...|+....+...+.|.|.+++++|
T Consensus 5 Q~P~sl-~~~~G~svtL~C~~~~--~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 81 (106)
T d1op3k1 5 QSPSTL-SASVGDTITITCRASQ--SIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDD 81 (106)
T ss_dssp EECSEE-EECTTCEEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred CcCCeE-EECCCCCEEEEEEeCC--CCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccC
Confidence 447777 8999999999999874 33446899982 2 2221 1247777777788899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+..
T Consensus 82 sa~YyCa~~~ 91 (106)
T d1op3k1 82 FATYHCQHYA 91 (106)
T ss_dssp CSEEEEEEEC
T ss_pred CCcEeeeeCC
Confidence 9999998764
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.27 E-value=2e-06 Score=71.78 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=54.5
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE--c----cC------CCceE--EEecCceEEEEEccCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP--I----KS------GSRFT--ETNNFGFVALDIMQCL 249 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~--l----~~------~~~~~--~~~~~~~~~L~I~~~~ 249 (808)
+...|..+.+.+|++|+|.|.+ .+.....+.|||. |.. + .. ..++. .......++|.|.+++
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~--s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 80 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSF--TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ 80 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEE--SCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred cEeeCCEEEEcCCCCEEEEEEE--ecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC
Confidence 3446777889999999999998 3555667999982 221 1 01 11222 2233456789999999
Q ss_pred CCCcEEEEEEEEeCce
Q psy2145 250 PEDSGVYTCRAVNALG 265 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~g 265 (808)
.+|+|.|.|.+....+
T Consensus 81 ~~Dsg~YyCa~~~~~~ 96 (113)
T d2bnqd1 81 PGDSATYLCAVRPTSG 96 (113)
T ss_dssp GGGCEEEEEEEEESSS
T ss_pred CCCCcEEeEeEecCCC
Confidence 9999999999976443
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.27 E-value=1.5e-06 Score=72.87 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=55.2
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc---------------CCCceEEEe--cCceEEEEEc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK---------------SGSRFTETN--NFGFVALDIM 246 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~---------------~~~~~~~~~--~~~~~~L~I~ 246 (808)
++..+..+.+.+|++|+|.|.+.. ......+.||| .|..+. ...|+.... ....++|.|.
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~-~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDT-VYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS 81 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEEC-CSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred EEccCCCEEEcCCCCEEEEEEEcC-CccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence 445677788999999999999852 44566799998 222110 123554432 3345689999
Q ss_pred cCCCCCcEEEEEEEEeCc
Q psy2145 247 QCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 247 ~~~~~D~G~Y~C~a~n~~ 264 (808)
+++.+|+|.|.|.+....
T Consensus 82 ~~~~~Dsg~YyCa~~~~~ 99 (116)
T d1tvda_ 82 PVRTEDSATYYCAFTLPP 99 (116)
T ss_dssp SCCGGGCEEEEEEEECTT
T ss_pred CccccccccceeeEecCC
Confidence 999999999999987643
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.26 E-value=1.9e-06 Score=70.78 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=54.3
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE---c---------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP---I---------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||| .|.. | ....++.....+....|.|.+++++
T Consensus 4 ltQ~p~~l~~~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~ 81 (107)
T d1mexl1 4 MTQSQKFMSTSLGNRVSVTCKAS--QNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSE 81 (107)
T ss_dssp EECCCSEEEECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEeC--CCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhhee
Confidence 34456667899999999999984 34344689998 2221 1 1234666666666778999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 82 DsA~YyCa~~~ 92 (107)
T d1mexl1 82 DLAEYFCQQYN 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred cceeEEEeECC
Confidence 99999998654
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.26 E-value=1.4e-06 Score=71.76 Aligned_cols=72 Identities=21% Similarity=0.427 Sum_probs=55.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|. .|. ...++....+...+.|.|.+++.+|
T Consensus 6 QsP~~l-~~~~G~svtL~C~~s~--~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D 82 (109)
T d1mqkl_ 6 QTPVSL-SASVGETVTITCRASE--NIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED 82 (109)
T ss_dssp EECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CcCCEE-EECCCCCEEEEEEeCC--CcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccC
Confidence 457787 8999999999999873 3344699998 222 121 1246776667778899999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
+|.|.|.+.
T Consensus 83 Sa~YyCA~~ 91 (109)
T d1mqkl_ 83 FGSYYCQHH 91 (109)
T ss_dssp CEEEEEEEC
T ss_pred CeeEEEeee
Confidence 999999875
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.25 E-value=3.1e-06 Score=69.47 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=54.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.|||. |.. | ....++.........+|.|.+++++
T Consensus 4 ~tQ~P~sl~~~~G~svtl~C~~s--~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~ 81 (107)
T d1d5il1 4 MTQSPSSMYASLGERVTITCKAS--QDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEcC--CCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCc
Confidence 34567778899999999999983 444556889982 221 1 0124566665666679999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCa~~~ 92 (107)
T d1d5il1 82 DMGIYYCLQYD 92 (107)
T ss_dssp GCEEEEEEECS
T ss_pred CCEEEEeeecc
Confidence 99999998754
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=7.4e-07 Score=73.94 Aligned_cols=83 Identities=11% Similarity=0.239 Sum_probs=55.2
Q ss_pred ccCCCceEEEEEEeeCCCCCc--EEEEEECCEecCCCCCeEEE-eeCc---EEEEEECCCCCCCCEEEEEEEEeCCee--
Q psy2145 516 VEEGKNAHFSCRLIPVGDPTL--KVEWFRNEKPLEDSSRITTK-HDFG---YVAMDLSHVRAEDEGIYICKATNALGE-- 587 (808)
Q Consensus 516 v~~G~~v~l~C~v~~~g~P~~--~v~W~k~g~~l~~~~~~~~~-~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~-- 587 (808)
+.+|+.++|+|.+. .+.|.+ .|.|+++++.+......... ..++ ...|.+.....+|...|+|.|+|..+.
T Consensus 13 l~~G~~~~l~C~v~-~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~ 91 (109)
T d1vcaa1 13 LEAGKPITVKCSVA-DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 91 (109)
T ss_dssp EETTSCEEEEEEEE-EEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred ccCCCeEEEEeEeC-CcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence 67999999999996 567854 69999999876531110000 0011 135777766666666999999998654
Q ss_pred -----EEEEEEEEEEec
Q psy2145 588 -----AVTTASMKIKTK 599 (808)
Q Consensus 588 -----~~~s~~l~V~~~ 599 (808)
..++..|.|...
T Consensus 92 ~~~~~~~t~~~L~V~~~ 108 (109)
T d1vcaa1 92 SVPTVRQAVKELQVYIS 108 (109)
T ss_dssp TSCSEEEEEEECCEECC
T ss_pred ccccccceeEEeEEEeC
Confidence 345566777654
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.24 E-value=1.5e-06 Score=71.82 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=55.5
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... ......+.|||. |. .|. ...++....+...+.|.|.++..+|
T Consensus 6 Q~P~~~-~v~~G~tv~l~C~~~~-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D 83 (108)
T d2fx7l1 6 QSPGTQ-SLSPGERATLSCRASQ-SVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED 83 (108)
T ss_dssp CSSSEE-EECTTCCEEEEEEESS-CCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeCCeE-EECCCCCEEEEEEeec-CCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence 456777 8999999999999763 223456899982 32 221 1346776777778899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+.+
T Consensus 84 sa~YyCa~~~ 93 (108)
T d2fx7l1 84 FAVYYCQQYG 93 (108)
T ss_dssp CSEEEEEECS
T ss_pred cEEEeeecCC
Confidence 9999998753
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.23 E-value=1.9e-06 Score=72.04 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=53.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc---------------CCCceEEEecCceEEEEEccC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK---------------SGSRFTETNNFGFVALDIMQC 248 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~---------------~~~~~~~~~~~~~~~L~I~~~ 248 (808)
++..+..+.+.+|++|+|.|... .......+.||| .|..+. ...++......+.++|.|.++
T Consensus 3 VtQ~~~~v~v~~G~~VtL~C~~~-~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (114)
T d2ak4d1 3 VTQAQTEISVVEKEDVTLDCVYE-TRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS 81 (114)
T ss_dssp EECCCCEEEEETTCCEEECCEEE-CSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred EEecCCeEEEeCCCCEEEEEEEc-CCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence 34456677899999999999875 244455689998 222110 011122333455678999999
Q ss_pred CCCCcEEEEEEEEeCc
Q psy2145 249 LPEDSGVYTCRAVNAL 264 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~~ 264 (808)
+.+|+|.|.|.+....
T Consensus 82 ~~~Dsg~YyCa~~~~~ 97 (114)
T d2ak4d1 82 QVVDSAVYFCALSGFY 97 (114)
T ss_dssp CGGGCEEEEEEEECSB
T ss_pred ccccCCCceEeCCCCC
Confidence 9999999999887643
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=7.7e-07 Score=72.09 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=51.4
Q ss_pred eeecCCCeEEEEEEEeecCCCCeEEEEeeCCE--EccC------------CCceEEE---ecCceEEEEEccCCCCCcEE
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTMKVEWFHNNV--PIKS------------GSRFTET---NNFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~--~l~~------------~~~~~~~---~~~~~~~L~I~~~~~~D~G~ 255 (808)
+...+|++|+|.|.. .......+.|++... .+.. ..++... ...+..+|.|.+++.+|+|.
T Consensus 4 V~~~~G~svtL~C~~--s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~ 81 (97)
T d2nxyb1 4 VLGKKGDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (97)
T ss_dssp EEEETTSCEEECCBC--SSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred EEEEcCCcEEEEEEE--ecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence 456799999999998 456667899998432 1110 1122211 12245589999999999999
Q ss_pred EEEEEEeCceeEEEEEEEEE
Q psy2145 256 YTCRAVNALGQAVTSGNLLV 275 (808)
Q Consensus 256 Y~C~a~n~~g~~~~~~~l~V 275 (808)
|.|.+.+. ...+.|.|
T Consensus 82 Y~C~v~~~----~~~v~L~V 97 (97)
T d2nxyb1 82 YICEVEDQ----KEEVQLLV 97 (97)
T ss_dssp EEEEETTE----EEEEEEEE
T ss_pred EEEEEecC----CeEEEEEC
Confidence 99999652 34455554
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.22 E-value=1.6e-06 Score=71.41 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=55.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCC-CCceEEEEe--CCEEee------------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFK--NGRPVT------------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~-p~~~v~W~~--~g~~l~------------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
+.+|+++ .+.+|++|+|.|....... ....+.||| .|+.+. ...|+....++..+.|.|.++..
T Consensus 4 ~tQ~~sl-svs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~ 82 (110)
T d1oaql_ 4 VTQESAL-TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT 82 (110)
T ss_dssp EEECSEE-EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG
T ss_pred EeeCCCE-EeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc
Confidence 4456677 8999999999999873111 123488998 232221 13577777778888999999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|+|.|.|.+..
T Consensus 83 ~Dsa~YyCa~~~ 94 (110)
T d1oaql_ 83 EDEAIYFCALWY 94 (110)
T ss_dssp GGCEEEEEEEEE
T ss_pred cccEeEEEEccc
Confidence 999999999764
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=9.8e-07 Score=74.28 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=58.2
Q ss_pred ecCceeecCCCeEEEEEEEeec-CCCCeEEEEeeCC--EE---c---------cCCCceEE--EecCceEEEEEccCCCC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPV-SDNTMKVEWFHNN--VP---I---------KSGSRFTE--TNNFGFVALDIMQCLPE 251 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~~~g--~~---l---------~~~~~~~~--~~~~~~~~L~I~~~~~~ 251 (808)
.|+.+.+.+|++|+|.|..... ......+.|+|.. .. + ....++.+ ....+.++|.|.+++.+
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~ 84 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 84 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence 5667888999999999987310 1123467898832 11 1 01223332 34456779999999999
Q ss_pred CcEEEEEEEEeCceeEEEEEEEEEee
Q psy2145 252 DSGVYTCRAVNALGQAVTSGNLLVHS 277 (808)
Q Consensus 252 D~G~Y~C~a~n~~g~~~~~~~l~V~~ 277 (808)
|+|.|.|.+..........+.|+|..
T Consensus 85 DsG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 85 DSGRYKCGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp GCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred CCEEEEEEEEcCCCCceEeEEEEEEC
Confidence 99999999875433334457777764
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.22 E-value=9.9e-07 Score=73.91 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eeec------------cCcEEEEeeCCeEEEEEcccCc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVTI------------GHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~~------------~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
.|..+ .+.+|++|+|.|.... .....+.||| .|. .|.. ..++....+...+.|.|.+++.
T Consensus 6 ~~~~v-~v~~G~svtl~C~~~~--~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 6 PDARV-TVSEGASLQLRCKYSY--SATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp CCSEE-EEETTSCEEECCEEEC--SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred CCCeE-EECCCCCEEEEEEEcC--CCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 34456 9999999999999874 3445788997 222 1210 1122222334456899999999
Q ss_pred CCCeeEEEEEEecCcceE--EEEEEEEe
Q psy2145 118 EDSGTYTCRAVNLVGFAE--VQATLQCR 143 (808)
Q Consensus 118 ~D~G~Y~C~a~n~~g~~~--~~~~l~V~ 143 (808)
+|+|.|.|.+........ .-..|+|.
T Consensus 83 ~Dsg~YyCa~~~~~~~~~FG~GT~L~V~ 110 (115)
T d1i9ea_ 83 SDSAVYFCAVSGFASALTFGSGTKVIVL 110 (115)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred cccceecccccCCCCCCEECCCEEEEEe
Confidence 999999998764321111 23566665
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.22 E-value=1.7e-06 Score=71.00 Aligned_cols=73 Identities=21% Similarity=0.375 Sum_probs=53.8
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|. .|. ...++....++..+.|.|.+++.+|
T Consensus 6 Q~P~~l-~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D 82 (108)
T d1jhll_ 6 QSPSYL-VASPGETITINCRASK--SISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED 82 (108)
T ss_dssp EECSEE-EECTTSCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred ccCCeE-EecCCCCEEEEEEccC--CcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence 447777 8999999999999873 3344699998 221 111 1234555666777899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+.+
T Consensus 83 sa~YyCA~~~ 92 (108)
T d1jhll_ 83 FAMYICQQHN 92 (108)
T ss_dssp CSEEEEEECS
T ss_pred ceEEEEeeCC
Confidence 9999997654
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.22 E-value=1.7e-06 Score=71.98 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=54.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeC----CCCCceEEEEe--CCEEe---e---------ccCcEEEEeeCCeEEEEEccc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPV----TDSNLKVEWFK--NGRPV---T---------IGHRFRPIHDFGYVALDIIDT 115 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~----~~p~~~v~W~~--~g~~l---~---------~~~r~~~~~~~~~~~L~I~~~ 115 (808)
..|..+ .+.+|++|+|.|.+... ......+.||| .|..+ . ...++....+...+.|.|.++
T Consensus 6 Q~P~~v-~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l 84 (113)
T d1q9ra1 6 QSPSSL-AVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV 84 (113)
T ss_dssp EECSEE-EEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred ccCCEE-EECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence 347777 89999999999987531 11223589998 23211 1 134666666778889999999
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
+.+|+|.|.|.+.+
T Consensus 85 ~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 85 QAEDLAVYYCKQSY 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccCCCeEEEecccC
Confidence 99999999998653
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.21 E-value=3.2e-06 Score=69.14 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=52.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... . ....+.||+. |..+ ....++........++|.|.+++.+
T Consensus 3 vtQsP~~l~~~~G~~vtl~C~~s--~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~ 79 (104)
T d1yqvl1 3 LTQSPAIMSASPGEKVTMTCSAS--S-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETE 79 (104)
T ss_dssp EEEESSEEEECTTCCEEEEEEES--S-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeC--C-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcc
Confidence 34567788899999999999873 2 3345789982 2111 0133455555566779999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 80 Dsa~YyCa~~~ 90 (104)
T d1yqvl1 80 DAATYYCQQWG 90 (104)
T ss_dssp GCEEEEEEECS
T ss_pred cCCeEEEEecC
Confidence 99999997643
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.21 E-value=2.1e-06 Score=71.09 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=50.7
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCCCCcEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 255 (808)
|.++.+.+|++|+|.|... .......+.||| .|..+ ....++....+.....|.|.+++.+|+|.
T Consensus 5 P~svsv~~G~~vtl~C~~s-~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 83 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHS-TISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV 83 (110)
T ss_dssp CSEEEEETTSCEEEEEECT-TCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEEc-CCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence 4467889999999999973 123445689998 23211 11223334445566789999999999999
Q ss_pred EEEEEEe
Q psy2145 256 YTCRAVN 262 (808)
Q Consensus 256 Y~C~a~n 262 (808)
|.|.+..
T Consensus 84 YyCa~~~ 90 (110)
T d2esvd1 84 YYCIVVR 90 (110)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9999864
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.20 E-value=2.8e-06 Score=69.37 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=51.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCCCcEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 255 (808)
|..+.+.+|++|+|.|... ......+.|||. |..+ ....++....+.....|.|.+++++|+|.
T Consensus 5 p~sl~~~~G~svtl~C~~~--~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~ 82 (103)
T d8faba1 5 PPSVSVSPGQTARITCSAN--ALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEAD 82 (103)
T ss_dssp CSEEEECTTSCEEEEEECT--TGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEE
T ss_pred CCeEEECCCCCEEEEEEeC--CCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCce
Confidence 3467788999999999873 444456899982 2211 11334555556667799999999999999
Q ss_pred EEEEEEeC
Q psy2145 256 YTCRAVNA 263 (808)
Q Consensus 256 Y~C~a~n~ 263 (808)
|.|.+.+.
T Consensus 83 YyCA~~~~ 90 (103)
T d8faba1 83 YYCQAWDN 90 (103)
T ss_dssp EEEEEEET
T ss_pred EEeeecCC
Confidence 99987653
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.20 E-value=2.9e-06 Score=68.25 Aligned_cols=81 Identities=20% Similarity=0.409 Sum_probs=55.3
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce---EEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF---TETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
.||.+.+-+.. .+..|+.++|.|.+.+.-.+...|.|++||+++..+... ....++.+.......+..++.+.|+|
T Consensus 2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC 80 (100)
T d1muja1 2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC 80 (100)
T ss_dssp CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence 46777776543 456789999999998765667999999999998654211 11222233333444445667789999
Q ss_pred EEEeC
Q psy2145 259 RAVNA 263 (808)
Q Consensus 259 ~a~n~ 263 (808)
++.+.
T Consensus 81 ~V~H~ 85 (100)
T d1muja1 81 KVEHW 85 (100)
T ss_dssp EEECT
T ss_pred EEEEC
Confidence 99985
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.20 E-value=2.4e-06 Score=70.44 Aligned_cols=75 Identities=27% Similarity=0.446 Sum_probs=54.6
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPED 252 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~D 252 (808)
+..|..+.+.+|++|+|.|.+. .......+.|||. |.. | ....++........+.|.|.+++++|
T Consensus 5 tQ~P~~~~v~~G~tv~l~C~~~-~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D 83 (108)
T d2fx7l1 5 TQSPGTQSLSPGERATLSCRAS-QSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED 83 (108)
T ss_dssp ECSSSEEEECTTCCEEEEEEES-SCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EeeCCeEEECCCCCEEEEEEee-cCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence 3456678899999999999983 1223456899983 321 1 12345666666667789999999999
Q ss_pred cEEEEEEEEe
Q psy2145 253 SGVYTCRAVN 262 (808)
Q Consensus 253 ~G~Y~C~a~n 262 (808)
+|.|.|.+.+
T Consensus 84 sa~YyCa~~~ 93 (108)
T d2fx7l1 84 FAVYYCQQYG 93 (108)
T ss_dssp CSEEEEEECS
T ss_pred cEEEeeecCC
Confidence 9999998754
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.19 E-value=2e-06 Score=71.05 Aligned_cols=74 Identities=20% Similarity=0.385 Sum_probs=55.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CC---EEee---------ccCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NG---RPVT---------IGHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g---~~l~---------~~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
...|..+ .+.+|++|+|.|.... .....+.||| .| +.|. ...++....++..+.|.|.+++.+
T Consensus 7 tQsP~~l-~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~ 83 (109)
T d1bwwa_ 7 TQSPSSL-SASVGDRVTITCQASQ--DIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPE 83 (109)
T ss_dssp EEECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EeeCCEE-EECCCCCEEEEEEecC--CCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeC
Confidence 3447777 8999999999999874 3344688998 22 1221 135677777777889999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+..
T Consensus 84 Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 84 DIATYYCQQYQ 94 (109)
T ss_dssp GCEEEEEEECS
T ss_pred cCceEEEeecC
Confidence 99999998753
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.19 E-value=1.1e-06 Score=73.47 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=54.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--C---EEee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--G---RPVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g---~~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|..+ .+.+|++|+|.|.... .-...+.|||. | +.|. ...++....+...+.|.|.+++.+|
T Consensus 6 Q~P~sv-~~~~G~svtl~C~~s~--~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D 82 (119)
T d1f3rb2 6 QSPSLL-SASVGDRVTLSCKGSQ--NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED 82 (119)
T ss_dssp EETSEE-CCCTTCCEEEEEECSS--CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred ccCCEE-EECCCCCEEEEEEeCC--CCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCC
Confidence 346677 8999999999998763 33446899982 2 2222 1246666666677899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+.+
T Consensus 83 savYyCa~~~ 92 (119)
T d1f3rb2 83 VATYFCYQYN 92 (119)
T ss_dssp CSEEEEEEES
T ss_pred CeEEEeeccC
Confidence 9999998764
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.19 E-value=3.8e-06 Score=69.59 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=51.9
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCCCcEEE
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPEDSGVY 256 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 256 (808)
..+.+.+|++|+|.|.+.+.......+.||+. |.. | ....++....+...+.|.|.+++.+|+|.|
T Consensus 8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y 87 (114)
T d2rhea_ 8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY 87 (114)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence 35788899999999998422223457899983 221 1 112355555566677999999999999999
Q ss_pred EEEEEe
Q psy2145 257 TCRAVN 262 (808)
Q Consensus 257 ~C~a~n 262 (808)
.|.+..
T Consensus 88 yCA~~~ 93 (114)
T d2rhea_ 88 YCAAWN 93 (114)
T ss_dssp EEEEEE
T ss_pred EEeecC
Confidence 998864
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.18 E-value=1.5e-06 Score=72.63 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=52.1
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceEEE--ecCceEEEEEccCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFTET--NNFGFVALDIMQCL 249 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~--~~~~~~~L~I~~~~ 249 (808)
++..+..+.+.+|++|+|.|... ......+.|||. |..+. ...++... .......|.|.+++
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~--~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQ--STYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQ 81 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEE--CSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCC
T ss_pred EEcCCCeEEECCCCCEEEEEEEe--CCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccc
Confidence 34456677899999999999985 344567999982 22110 12233332 22234579999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 250 PEDSGVYTCRAVNA 263 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~ 263 (808)
++|+|.|.|.+...
T Consensus 82 ~~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 82 LSDSALYYCALFLA 95 (115)
T ss_dssp GGGCEEEEEEEEEC
T ss_pred cccCccceEEEEcC
Confidence 99999999988653
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.5e-06 Score=66.82 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=55.5
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
|.||.+...+.. .|..|++|+|.|.. ..+...+.|+|+|..-. .........+.+.|.+|+..|+|.|+|.
T Consensus 2 ypkPsLsa~P~~--~V~~G~~VTL~C~~---~~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~ 72 (93)
T d1olla2 2 YDTPTLSVHPGP--EVISGEKVTFYCRL---DTATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCF 72 (93)
T ss_dssp SCCCEEEEESCS--EEETTCEEEEEEEC---SSSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEE
T ss_pred CCCCEEEEeCCC--cccCCCcEEEEECC---CCCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEE
Confidence 567888877653 58889999999986 56678999999986322 1122224567899999999999999997
Q ss_pred EE
Q psy2145 713 AI 714 (808)
Q Consensus 713 A~ 714 (808)
..
T Consensus 73 ~~ 74 (93)
T d1olla2 73 GS 74 (93)
T ss_dssp CE
T ss_pred eE
Confidence 43
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=2.2e-06 Score=70.34 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=54.9
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee---------ccCcEEEEeeCCeEEEEEcccCcCC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT---------IGHRFRPIHDFGYVALDIIDTIPED 119 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~---------~~~r~~~~~~~~~~~L~I~~~~~~D 119 (808)
..|.++ .+.+|++|+|.|.... .....+.||| .|. .|. ...|+....+...++|.|.++..+|
T Consensus 6 Q~P~sl-~~~~G~svtl~C~~s~--~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D 82 (107)
T d1d5il1 6 QSPSSM-YASLGERVTITCKASQ--DINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED 82 (107)
T ss_dssp EECSEE-EECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeCCEE-EECCCCCEEEEEEcCC--CCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence 347777 8999999999999873 4455688997 222 121 1246776667777899999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1d5il1 83 MGIYYCLQYD 92 (107)
T ss_dssp CEEEEEEECS
T ss_pred CEEEEeeecc
Confidence 9999997654
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.18 E-value=3.2e-06 Score=69.37 Aligned_cols=71 Identities=15% Similarity=0.375 Sum_probs=52.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CE---Ec---------cCCCceEEEecCceEEEEEccCCCCCcE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NV---PI---------KSGSRFTETNNFGFVALDIMQCLPEDSG 254 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~---~l---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 254 (808)
+|..+.+.+|++|+|.|... +.....+.|||. |. .| ....++....++....|.|.+++++|+|
T Consensus 6 Qp~s~~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 83 (106)
T d1lk3l1 6 QPPALTVSPGEKLTISCKAS--ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA 83 (106)
T ss_dssp CCSEEEECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eCCeEEECCCCCEEEEEEeC--CCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCC
Confidence 44567889999999999984 334456899982 21 11 1234666666666779999999999999
Q ss_pred EEEEEEE
Q psy2145 255 VYTCRAV 261 (808)
Q Consensus 255 ~Y~C~a~ 261 (808)
.|.|.+.
T Consensus 84 ~YyCa~~ 90 (106)
T d1lk3l1 84 IYFCQQS 90 (106)
T ss_dssp EEEEEEC
T ss_pred Ccccccc
Confidence 9999654
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.18 E-value=1.4e-06 Score=72.93 Aligned_cols=74 Identities=11% Similarity=0.142 Sum_probs=51.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee----------ccCcEEEEe--eCCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT----------IGHRFRPIH--DFGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~----------~~~r~~~~~--~~~~~~L~I~~~~ 116 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|+ .|. ...++.... ....+.|.|.++.
T Consensus 5 Q~p~~v-~~~~G~~vtl~C~~s~--~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1j8hd1 5 QLGSHV-SVSEGALVLLRCNYSS--SVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH 81 (115)
T ss_dssp CSCSEE-EEETTSCEEECCEEEC--SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred cCCCeE-EEcCCCCEEEEEEeCC--CCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence 346666 8999999999999873 3445799998 222 121 112333322 2344579999999
Q ss_pred cCCCeeEEEEEEec
Q psy2145 117 PEDSGTYTCRAVNL 130 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~ 130 (808)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 82 MSDAAEYFCAVSES 95 (115)
T ss_dssp GGGCEEEEEEEESS
T ss_pred ccCCccceeeecCC
Confidence 99999999999754
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.18 E-value=2e-06 Score=72.12 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=52.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc-------------CCCceEEE--ecCceEEEEEccC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK-------------SGSRFTET--NNFGFVALDIMQC 248 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~-------------~~~~~~~~--~~~~~~~L~I~~~ 248 (808)
++..+..+.+.+|++|+|.|... .......+.|||. |..+. ...++... .....+.|.|.++
T Consensus 2 VtQ~p~~v~~~~G~~Vtl~C~~~-~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (115)
T d1fo0a_ 2 VTQTQTSISVMEKTTVTMDCVYE-TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITAT 80 (115)
T ss_dssp EECCCCEEEEETTCCEEECCEEC-CCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSC
T ss_pred eEccCCEEEEcCCCCEEEEEEEc-CCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCC
Confidence 34456678899999999999984 2344556899982 22110 01233332 2345578999999
Q ss_pred CCCCcEEEEEEEEeC
Q psy2145 249 LPEDSGVYTCRAVNA 263 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~ 263 (808)
+.+|+|.|.|.+...
T Consensus 81 ~~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 81 QIEDSAVYFCAMRGD 95 (115)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred CccccccccceeecC
Confidence 999999999998753
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.17 E-value=2.6e-06 Score=70.76 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=56.2
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCC-CCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVT-DSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~-~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
+.+|.++ .+.+|++|+|.|...... .....+.||| .|+. +. ...++....+...+.|.|.+++.
T Consensus 4 ltQP~s~-~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 82 (112)
T d1lgva1 4 LTQPASV-SGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQA 82 (112)
T ss_dssp BBCCSEE-EECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCG
T ss_pred ccCCCcE-EECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcc
Confidence 4568777 899999999999987411 1233589998 2222 11 13466666677788999999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+.+.
T Consensus 83 ~Dsa~YyCa~~~~ 95 (112)
T d1lgva1 83 EDEADYYCSSYDG 95 (112)
T ss_dssp GGCEEEEEEEECS
T ss_pred ccCEEEEEeeecC
Confidence 9999999988754
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.17 E-value=4.1e-06 Score=68.92 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=54.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE---cc---------CCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP---IK---------SGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||| .|+. |. ...++....+.....|.|.+++++
T Consensus 4 ltQsP~~l~~~~G~svtL~C~~s--~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~ 81 (109)
T d1mqkl_ 4 LTQTPVSLSASVGETVTITCRAS--ENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE 81 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EECcCCEEEECCCCCEEEEEEeC--CCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc
Confidence 34567788899999999999983 34445699999 2221 10 124555555666778999999999
Q ss_pred CcEEEEEEEE
Q psy2145 252 DSGVYTCRAV 261 (808)
Q Consensus 252 D~G~Y~C~a~ 261 (808)
|+|.|.|.+.
T Consensus 82 DSa~YyCA~~ 91 (109)
T d1mqkl_ 82 DFGSYYCQHH 91 (109)
T ss_dssp GCEEEEEEEC
T ss_pred CCeeEEEeee
Confidence 9999999875
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.17 E-value=1.2e-06 Score=72.71 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=55.4
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEe--eCCeEEEEEccc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIH--DFGYVALDIIDT 115 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~--~~~~~~L~I~~~ 115 (808)
++.+|+++ .+.+|++|+|.|...+.......+.||| .++.+. ...|+.... ....+.|.|.++
T Consensus 3 vltQP~s~-sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l 81 (111)
T d1cd0a_ 3 MLNQPHSV-SESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGL 81 (111)
T ss_dssp CEECCSEE-EECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSC
T ss_pred cEecCCee-EECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccC
Confidence 45678887 9999999999999874212234589998 232211 124555543 346789999999
Q ss_pred CcCCCeeEEEEEEec
Q psy2145 116 IPEDSGTYTCRAVNL 130 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~ 130 (808)
+.+|+|.|.|.+.+.
T Consensus 82 ~~~Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 82 KTEDEADYYCQSYDA 96 (111)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred CcccCcEEEEeeccC
Confidence 999999999987653
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=2.9e-06 Score=71.66 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=51.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c---------------cCcEEEEe-eCCeE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I---------------GHRFRPIH-DFGYV 108 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~---------------~~r~~~~~-~~~~~ 108 (808)
..|..+ .+.+|++|+|.|.+.. .....+.||| .|.. |. . ..|+.... ++..+
T Consensus 6 ~~P~~~-~~~~G~~vtL~C~~~~--~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 82 (122)
T d1nezg_ 6 IFPKKM-DAELGQKVDLVCEVLG--SVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKY 82 (122)
T ss_dssp EESSCE-EECTTCCEEEEEEEES--CCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEE
T ss_pred EcCCEE-EECCCCCEEEEEEEcC--ccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEe
Confidence 347777 8999999999999974 4556799998 2221 11 0 12344332 34557
Q ss_pred EEEEcccCcCCCeeEEEEEE
Q psy2145 109 ALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~ 128 (808)
+|+|.+++.+|+|.|.|.+.
T Consensus 83 ~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 83 VLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp EEEESSCCGGGCEEEEEEEE
T ss_pred EEEEcccccCCCEEEEeeEe
Confidence 89999999999999999875
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.15 E-value=4.2e-06 Score=69.12 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=55.2
Q ss_pred cCCCCccccCCCCcEEEEEEEee-C-CCCCceEEEEeC--CEEe----e--------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEP-V-TDSNLKVEWFKN--GRPV----T--------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~-~-~~p~~~v~W~~~--g~~l----~--------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|.+.. . ......+.|||. |... . ...|+....++..+.|.|.+++.
T Consensus 6 QsP~s~-s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~ 84 (111)
T d2gsia1 6 QSPASL-AVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE 84 (111)
T ss_dssp EECSEE-EEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eeCCEE-EECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence 447777 8999999999998753 1 122234899982 2211 1 13577777777888999999999
Q ss_pred CCCeeEEEEEEec
Q psy2145 118 EDSGTYTCRAVNL 130 (808)
Q Consensus 118 ~D~G~Y~C~a~n~ 130 (808)
+|+|.|.|.+.+.
T Consensus 85 ~DsA~YyCa~~~~ 97 (111)
T d2gsia1 85 EDAATYYCSHIRE 97 (111)
T ss_dssp GGCEEEEEEECSS
T ss_pred cCCceEEEEECCC
Confidence 9999999987543
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.5e-06 Score=72.60 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=49.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Eeec------------cCcEEEEee--CCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PVTI------------GHRFRPIHD--FGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l~~------------~~r~~~~~~--~~~~~L~I~~~~~~D~G 121 (808)
.+.+|++|+|.|...........+.|||. |. .|.. ..|+.+..+ .+.++|+|.+++.+|+|
T Consensus 10 ~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg 89 (113)
T d1smoa_ 10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSG 89 (113)
T ss_dssp ECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred EEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCc
Confidence 78899999999987631223457889982 21 1211 136666543 46689999999999999
Q ss_pred eEEEEEEec
Q psy2145 122 TYTCRAVNL 130 (808)
Q Consensus 122 ~Y~C~a~n~ 130 (808)
.|.|.+...
T Consensus 90 ~Y~Cav~~~ 98 (113)
T d1smoa_ 90 LYQCVIYQP 98 (113)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEECC
Confidence 999988543
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.13 E-value=4.5e-06 Score=69.21 Aligned_cols=74 Identities=20% Similarity=0.370 Sum_probs=52.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEee--CCeEEEEEcccC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHD--FGYVALDIIDTI 116 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~--~~~~~L~I~~~~ 116 (808)
...|.++ .+.+|++|+|.|.... .....+.||+ .|+. |. ...++....+ ...++|.|.++.
T Consensus 4 ~Q~p~s~-~~~~G~svtl~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (111)
T d1bd2d1 4 KQNSPSL-SVQEGRISILNCDYTN--SMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQ 80 (111)
T ss_dssp ECCCSEE-EEETTSCEEEEEEECC--TTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EccCCEE-EEcCCCCEEEEEEeCC--CCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCc
Confidence 3457777 8899999999999874 3444688998 2221 11 1234544333 467899999999
Q ss_pred cCCCeeEEEEEEe
Q psy2145 117 PEDSGTYTCRAVN 129 (808)
Q Consensus 117 ~~D~G~Y~C~a~n 129 (808)
.+|+|.|.|.+..
T Consensus 81 ~~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 81 PGDSAVYFCAAME 93 (111)
T ss_dssp GGGCEEEEEEEES
T ss_pred ccccEEEEeeccC
Confidence 9999999998764
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.13 E-value=1.9e-06 Score=71.62 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=53.7
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee---c---------cCcEEEEeeCCeEEEEEcccCcC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT---I---------GHRFRPIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~---~---------~~r~~~~~~~~~~~L~I~~~~~~ 118 (808)
+..|..+ .+.+|++|+|.|...+. .....+.||| .|+.+. . ..++.+..+.....|.|.++..+
T Consensus 2 t~qP~~~-~~~~G~svtl~C~~s~~-~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 79 (112)
T d1kgcd1 2 TTQPNSM-ESNEEEPVHLPCNHSTI-SGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLR 79 (112)
T ss_dssp EECCSEE-EEETTSCEEEEEEESCC-CTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGG
T ss_pred eECCCEE-EECCCCCEEEEEEEeCC-CccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccc
Confidence 3567777 89999999999998742 3334589998 232211 1 12444455566778999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|+|.|.|.+..
T Consensus 80 Dsa~YyCa~~~ 90 (112)
T d1kgcd1 80 DAAVYYCILPL 90 (112)
T ss_dssp GCEEEEEECCC
T ss_pred cceeEeeeEec
Confidence 99999998754
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.13 E-value=7.9e-06 Score=67.41 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=54.9
Q ss_pred EEeecCceeecCCCeEEEEEEEee--cCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIP--VSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~--~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~ 249 (808)
++..|..+.+.+|++|+|.|.+.. .......+.||+. |... ....++.....+..+.|.|.+++
T Consensus 4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~ 83 (111)
T d2gsia1 4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE 83 (111)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence 345677788999999999998741 1112234899982 2211 11346666666667799999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 250 PEDSGVYTCRAVNA 263 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~ 263 (808)
++|+|.|.|.+...
T Consensus 84 ~~DsA~YyCa~~~~ 97 (111)
T d2gsia1 84 EEDAATYYCSHIRE 97 (111)
T ss_dssp GGGCEEEEEEECSS
T ss_pred ccCCceEEEEECCC
Confidence 99999999987543
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.13 E-value=5.5e-06 Score=68.30 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=54.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... +.....+.||+. |+. | ....++....++....|.|.+++++
T Consensus 6 ltQsP~~l~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~ 83 (109)
T d1bwwa_ 6 MTQSPSSLSASVGDRVTITCQAS--QDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPE 83 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEec--CCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeC
Confidence 44557778899999999999984 444456889982 211 1 1234566666666778999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 84 Dsa~YyCA~~~ 94 (109)
T d1bwwa_ 84 DIATYYCQQYQ 94 (109)
T ss_dssp GCEEEEEEECS
T ss_pred cCceEEEeecC
Confidence 99999998654
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.13 E-value=7.6e-06 Score=67.86 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=54.4
Q ss_pred EEeecCceeecCCCeEEEEEEEee----cCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEcc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIP----VSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQ 247 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~----~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~ 247 (808)
++..|..+.+.+|++|+|.|.+.. .......+.|||. |+.+ ....++....+...++|.|.+
T Consensus 4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~ 83 (113)
T d1q9ra1 4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS 83 (113)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence 345677788999999999998731 1122345899982 3211 123455666666777999999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++++|+|.|.|.+.+
T Consensus 84 l~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 84 VQAEDLAVYYCKQSY 98 (113)
T ss_dssp CCGGGCEEEEEEECS
T ss_pred cccCCCeEEEecccC
Confidence 999999999998754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.13 E-value=2e-06 Score=70.63 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=53.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
++..|..+.+.+|++|+|.|... ......+.||| .|+.+ ....++.........+|.|.+++++
T Consensus 4 ltQsP~s~~~~~G~~vtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~ 81 (107)
T d3cx5k1 4 LTQTPVSLAASLGDRVTISCRAS--QDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPE 81 (107)
T ss_dssp EEEESTTCCBCSSSCCEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSC
T ss_pred EECcCCEEEECCCCCEEEEEEcC--CCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeec
Confidence 44567788899999999999983 45555689998 22211 1223444444555679999999999
Q ss_pred CcEEEEEEEE
Q psy2145 252 DSGVYTCRAV 261 (808)
Q Consensus 252 D~G~Y~C~a~ 261 (808)
|+|.|.|.+.
T Consensus 82 Dsa~YyCa~~ 91 (107)
T d3cx5k1 82 DIATYFCQHH 91 (107)
T ss_dssp CCSEEEEEEC
T ss_pred CCCcEEeeeC
Confidence 9999999764
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.12 E-value=3.4e-06 Score=69.91 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=53.4
Q ss_pred cCCCCccccCCCCcEEEEEEEeeC---CCCCceEEEEe--CCEE---e-e--------ccCcEEEEeeCCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPV---TDSNLKVEWFK--NGRP---V-T--------IGHRFRPIHDFGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~---~~p~~~v~W~~--~g~~---l-~--------~~~r~~~~~~~~~~~L~I~~~~ 116 (808)
..|.++ .+.+|++|+|.|...+. ......+.||+ .|+. + . ...|+....+...+.|.|.+++
T Consensus 6 Q~p~sl-sv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~ 84 (112)
T d1mjul1 6 QAAPSV-PVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE 84 (112)
T ss_dssp CCCSEE-EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred ecCCEE-EECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence 446677 89999999999998641 12245789997 2222 1 1 1246666677788899999999
Q ss_pred cCCCeeEEEEE
Q psy2145 117 PEDSGTYTCRA 127 (808)
Q Consensus 117 ~~D~G~Y~C~a 127 (808)
.+|+|.|.|..
T Consensus 85 ~~DsAvYyCa~ 95 (112)
T d1mjul1 85 AEDVGVYYCLQ 95 (112)
T ss_dssp GGGCEEEEEEE
T ss_pred ccCCceEEEEe
Confidence 99999999954
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.11 E-value=3.6e-06 Score=70.32 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=55.2
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE---cc---C---------CCceEEEecCceEEEEEccCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP---IK---S---------GSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~---l~---~---------~~~~~~~~~~~~~~L~I~~~~ 249 (808)
..++..+.+.+|++|+|.|... ......+.||| .|.. |. . ..++.........+|.|.+++
T Consensus 4 ~Q~~~~v~v~~G~svtl~C~~~--~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1i9ea_ 4 TQPDARVTVSEGASLQLRCKYS--YSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH 81 (115)
T ss_dssp ECCCSEEEEETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred EcCCCeEEECCCCCEEEEEEEc--CCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence 3455568899999999999984 34455688998 2221 10 0 111111222334579999999
Q ss_pred CCCcEEEEEEEEeCceeEE--EEEEEEEe
Q psy2145 250 PEDSGVYTCRAVNALGQAV--TSGNLLVH 276 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~g~~~--~~~~l~V~ 276 (808)
.+|+|.|.|.+........ .-..|.|.
T Consensus 82 ~~Dsg~YyCa~~~~~~~~~FG~GT~L~V~ 110 (115)
T d1i9ea_ 82 WSDSAVYFCAVSGFASALTFGSGTKVIVL 110 (115)
T ss_dssp GGGCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred ccccceecccccCCCCCCEECCCEEEEEe
Confidence 9999999998865322211 12567775
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7.6e-06 Score=65.87 Aligned_cols=82 Identities=15% Similarity=0.361 Sum_probs=55.9
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc--eEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR--FTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
..+|.+.+-+.. .+..|+.++|.|.+.+.-.+...|+|++||.++..... .....++.+.......+..+|.+.|+|
T Consensus 3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC 81 (100)
T d1k5nb_ 3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC 81 (100)
T ss_dssp CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence 456777664332 35679999999999875566789999999999864322 222233333344444555677889999
Q ss_pred EEEeC
Q psy2145 259 RAVNA 263 (808)
Q Consensus 259 ~a~n~ 263 (808)
++.+.
T Consensus 82 ~V~H~ 86 (100)
T d1k5nb_ 82 RVNHV 86 (100)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99885
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.10 E-value=2.8e-06 Score=71.16 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=52.8
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC-----CEEee-----------------ccCcEEEEe--eCCeE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN-----GRPVT-----------------IGHRFRPIH--DFGYV 108 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~-----g~~l~-----------------~~~r~~~~~--~~~~~ 108 (808)
+..|..+ .+.+|++|+|.|.+.. ......+.|||. ++.|. ...|+.... +...+
T Consensus 2 ~Q~P~~~-~v~~G~sv~l~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (115)
T d2atpb1 2 IQTPSSL-LVQTNHTAKMSCEVKS-ISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRP 79 (115)
T ss_dssp EEECSEE-EECTTSCEEEEEECCS-SCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSC
T ss_pred EeeCCcE-EEcCCCCEEEEEEEeC-CCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeE
Confidence 4567777 8999999999999874 234457999973 33221 012333332 23456
Q ss_pred EEEEcccCcCCCeeEEEEEEe
Q psy2145 109 ALDIIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 109 ~L~I~~~~~~D~G~Y~C~a~n 129 (808)
+|.|.+++.+|+|.|.|.+..
T Consensus 80 ~L~I~~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 80 FLSIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp EEEECSCCGGGCEEEEEEEEC
T ss_pred EEeecccCCCCCcEEEEeEcC
Confidence 899999999999999998753
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.10 E-value=2.6e-06 Score=71.12 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=53.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEE--ecCceEEEEEccCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTET--NNFGFVALDIMQCL 249 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~--~~~~~~~L~I~~~~ 249 (808)
+...|..+.+.+|++|+|.|... ......+.|||. |.. | ....++... ......+|.|.+++
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~--~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~ 80 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYT--VSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ 80 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEEC--CSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC
T ss_pred cEeeCCEEEEeCCCCEEEEEEEc--CCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC
Confidence 44567788899999999999984 445567999982 111 1 011233332 22355789999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 250 PEDSGVYTCRAVNA 263 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~ 263 (808)
.+|+|.|.|.+...
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 81 LSDSASYICVVSDR 94 (114)
T ss_dssp GGGCSEEEEEEECS
T ss_pred hhhCcccceeeecC
Confidence 99999999999863
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.09 E-value=1.1e-05 Score=66.10 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=52.2
Q ss_pred cCceeecCCCeEEEEEEEeecCCC--CeEEEEee--CCEEcc------------CCCceEEEecCceEEEEEccCCCCCc
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDN--TMKVEWFH--NNVPIK------------SGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
+..+.+.+|++|+|.|.+.. +.. ...+.||| .|+.+. ...++.....+..+.|.|.+++.+|+
T Consensus 7 ~~slsvs~G~tvtl~C~~s~-~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Ds 85 (110)
T d1oaql_ 7 ESALTTSPGETVTLTCRSST-GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDE 85 (110)
T ss_dssp CSEEEECTTCEEEEEEEETT-BCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred CCCEEeCCCCCEEEEEEEcC-CCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCcccc
Confidence 34677899999999999841 221 23488998 232211 13466666666778999999999999
Q ss_pred EEEEEEEEeC
Q psy2145 254 GVYTCRAVNA 263 (808)
Q Consensus 254 G~Y~C~a~n~ 263 (808)
|.|.|.+...
T Consensus 86 a~YyCa~~~~ 95 (110)
T d1oaql_ 86 AIYFCALWYS 95 (110)
T ss_dssp EEEEEEEEET
T ss_pred EeEEEEcccC
Confidence 9999998653
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.09 E-value=3.4e-06 Score=69.90 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=52.8
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCCCcEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 255 (808)
|..+.+.+|++|+|.|.+.........+.||+. |.. | ....++....++..++|.|.+++++|+|.
T Consensus 7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~ 86 (111)
T d1rzfl1 7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (111)
T ss_dssp CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence 446789999999999987422223446999972 211 1 12345666666667899999999999999
Q ss_pred EEEEEEeC
Q psy2145 256 YTCRAVNA 263 (808)
Q Consensus 256 Y~C~a~n~ 263 (808)
|.|.+...
T Consensus 87 YyCA~~~~ 94 (111)
T d1rzfl1 87 YYCGTWDS 94 (111)
T ss_dssp EEEEEEET
T ss_pred eEEeecCC
Confidence 99988653
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.09 E-value=6.5e-06 Score=68.53 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=56.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---e---------eccCcEEE--EeeCCeEEEEEcccCcC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---V---------TIGHRFRP--IHDFGYVALDIIDTIPE 118 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l---------~~~~r~~~--~~~~~~~~L~I~~~~~~ 118 (808)
.|..+ .+.+|++|+|.|.... ....+.||| .|.. | ....++.. ......++|.|.++..+
T Consensus 6 ~P~~~-~~~~G~svtl~C~~s~---~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (115)
T d1ogad1 6 SPQFL-SIQEGENLTVYCNSSS---VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG 81 (115)
T ss_dssp ECSEE-EEETTCCEEEEEECSS---CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred CCCeE-EECCCCCEEEEEEECC---CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence 36666 8999999999999763 234799998 2221 1 11234433 23346679999999999
Q ss_pred CCeeEEEEEEecCcce--EEEEEEEEe
Q psy2145 119 DSGTYTCRAVNLVGFA--EVQATLQCR 143 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~--~~~~~l~V~ 143 (808)
|+|.|.|.+....+.. -.-..|+|.
T Consensus 82 Dsa~YyCa~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 82 DTGLYLCAGAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp GCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred ceeeEcccccCCCCCcEECCCEEEEEe
Confidence 9999999887543322 123566675
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=2.8e-06 Score=69.90 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=50.7
Q ss_pred ccCCCCcEEEEEEEeeCCCC---CceEEEEeCCEEeec------------cCcEEEEeeCCeEEEEEcccCcCCCeeEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDS---NLKVEWFKNGRPVTI------------GHRFRPIHDFGYVALDIIDTIPEDSGTYTC 125 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p---~~~v~W~~~g~~l~~------------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C 125 (808)
++..|++|+|.|.... ... ...+.|.+++..+.. ..|..... .+.++|.|.+++.+|+|.|.|
T Consensus 5 t~~~G~~a~L~C~~~~-~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~C 82 (105)
T d1dr9a1 5 TKEVKEVATLSCGHNV-SVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYEC 82 (105)
T ss_dssp EEETTSCEEECCSCCC-CTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEE
T ss_pred EEEeCCCEEEEEEECC-cccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEEE
Confidence 6789999999998763 221 247889888866521 23444332 345689999999999999999
Q ss_pred EEEecCc
Q psy2145 126 RAVNLVG 132 (808)
Q Consensus 126 ~a~n~~g 132 (808)
.+.+..+
T Consensus 83 ~V~~~~~ 89 (105)
T d1dr9a1 83 VVLKYEK 89 (105)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9986543
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.08 E-value=5.3e-06 Score=68.77 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=50.6
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceE--EEecCceEEEEEccCCCC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFT--ETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~--~~~~~~~~~L~I~~~~~~ 251 (808)
..|..+.+.+|++|+|.|... ......+.|||. |.... ...++. .......++|.|.+++.+
T Consensus 4 Q~P~~~~~~~G~~vtl~C~~~--~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 4 QSPQSLTVWEGETAILNCSYE--NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp CSCSSEEEETTSCEEEEEEEC--CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred ecCCEEEEcCCCCEEEEEEec--CCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 346677889999999999984 444557999983 22111 011222 223345568999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 82 Dsa~YyCa~~~ 92 (110)
T d1u3ha1 82 DSATYFCAASA 92 (110)
T ss_dssp SCSEEEECCEE
T ss_pred CceeEeeeecC
Confidence 99999999864
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.08 E-value=5.3e-06 Score=68.53 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=53.7
Q ss_pred cCCCCccccCCCCcEEEEEEEeeC---CCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPV---TDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~---~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~ 116 (808)
..|..+ .+.+|++|+|.|.+... ......+.||+ .|+. |. ...++....++..+.|.|.++.
T Consensus 6 QsP~sl-s~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~ 84 (112)
T d1ncwl1 6 QSPKTI-SVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE 84 (112)
T ss_dssp EECSEE-EEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred CcCCEE-EECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence 347777 89999999999987531 12234688997 2322 11 1246666667777899999999
Q ss_pred cCCCeeEEEEEEe
Q psy2145 117 PEDSGTYTCRAVN 129 (808)
Q Consensus 117 ~~D~G~Y~C~a~n 129 (808)
.+|+|.|.|...+
T Consensus 85 ~eDsAvYYC~~~~ 97 (112)
T d1ncwl1 85 AEDLGVYYCWQGT 97 (112)
T ss_dssp GGGCEEEEEEECS
T ss_pred cCcCEeEEEEcCC
Confidence 9999999996543
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.08 E-value=3.3e-06 Score=70.23 Aligned_cols=86 Identities=26% Similarity=0.436 Sum_probs=55.6
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE-Ee--ec-------cCcEE---EEeeCCeEEEEEcccCcC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR-PV--TI-------GHRFR---PIHDFGYVALDIIDTIPE 118 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~-~l--~~-------~~r~~---~~~~~~~~~L~I~~~~~~ 118 (808)
..|..+ .+.+|++|+|.|.... ....+.||| .|. +. .. ..... .......+.|.|.+++.+
T Consensus 6 Q~P~~~-~v~~G~~vtl~C~~~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (113)
T d1h5ba_ 6 QSPSAL-SLHEGTDSALRCNFTT---TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE 81 (113)
T ss_dssp EECSEE-EEETTCCEEEEEEESS---CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred ECCCEE-EEcCCCCEEEEEEEec---CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence 447777 8999999999999873 334799998 221 11 10 01111 112235568999999999
Q ss_pred CCeeEEEEEEecCcceE----EEEEEEEe
Q psy2145 119 DSGTYTCRAVNLVGFAE----VQATLQCR 143 (808)
Q Consensus 119 D~G~Y~C~a~n~~g~~~----~~~~l~V~ 143 (808)
|+|.|.|.+....+... .-..|+|.
T Consensus 82 Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~ 110 (113)
T d1h5ba_ 82 DSGTYFCAAEASSGSWQLIFGSGTQLTVM 110 (113)
T ss_dssp GCEEEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred HCEEEEEEecCCCCCCeeEECcCEEEEEE
Confidence 99999999875443321 23466665
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.07 E-value=6.9e-06 Score=68.84 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=53.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee-----------------ccCcEEEEee-CCeEEEEEc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT-----------------IGHRFRPIHD-FGYVALDII 113 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~-----------------~~~r~~~~~~-~~~~~L~I~ 113 (808)
..|..+ .+.+|++|+|.|.... .....+.||| .|+.+. ...++....+ ...+.|.|.
T Consensus 6 Q~P~~~-~~~~G~~v~L~C~~~~--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~ 82 (118)
T d2ij0c1 6 QHPSMV-IVKSGTSVKIECRSLD--TNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT 82 (118)
T ss_dssp EECSEE-EECTTCCEEEEEEECS--SCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred EcCCeE-EEcCCCCEEEEEEEcC--CcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence 446666 8999999999999874 3345799998 332211 1235555433 345689999
Q ss_pred ccCcCCCeeEEEEEEec
Q psy2145 114 DTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n~ 130 (808)
++..+|+|.|.|.+...
T Consensus 83 ~~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 83 SAHPEDSGFYVCSALAG 99 (118)
T ss_dssp SCCGGGCEEEEEEEECS
T ss_pred ccccccCceEEEEEecC
Confidence 99999999999998654
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.07 E-value=9.5e-06 Score=67.20 Aligned_cols=74 Identities=22% Similarity=0.402 Sum_probs=51.2
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------------CCCceEE--EecCceEEEEEccCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------------SGSRFTE--TNNFGFVALDIMQCLP 250 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~~~~~--~~~~~~~~L~I~~~~~ 250 (808)
...|..+.+.+|++|+|.|... ......+.||+ .|+.+. ...++.. ......++|.|.+++.
T Consensus 4 ~Q~p~s~~~~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (111)
T d1bd2d1 4 KQNSPSLSVQEGRISILNCDYT--NSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP 81 (111)
T ss_dssp ECCCSEEEEETTSCEEEEEEEC--CTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EccCCEEEEcCCCCEEEEEEeC--CCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence 3456667789999999999984 44455689998 232110 1123332 2334567999999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|+|.|.|.+..
T Consensus 82 ~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 82 GDSAVYFCAAME 93 (111)
T ss_dssp GGCEEEEEEEES
T ss_pred cccEEEEeeccC
Confidence 999999998764
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.07 E-value=9.8e-06 Score=67.65 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=51.4
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC-----CEEc------c-----------CCCceEEE--ecCceEE
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN-----NVPI------K-----------SGSRFTET--NNFGFVA 242 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~-----g~~l------~-----------~~~~~~~~--~~~~~~~ 242 (808)
+..|..+.+.+|++|+|.|.+.. ......+.|||. ++.+ . ...++... .+....+
T Consensus 2 ~Q~P~~~~v~~G~sv~l~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (115)
T d2atpb1 2 IQTPSSLLVQTNHTAKMSCEVKS-ISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF 80 (115)
T ss_dssp EEECSEEEECTTSCEEEEEECCS-SCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCE
T ss_pred EeeCCcEEEcCCCCEEEEEEEeC-CCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEE
Confidence 34677788999999999999842 234567999983 2221 0 11222222 2334568
Q ss_pred EEEccCCCCCcEEEEEEEEe
Q psy2145 243 LDIMQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 243 L~I~~~~~~D~G~Y~C~a~n 262 (808)
|.|.+++.+|+|.|.|.+..
T Consensus 81 L~I~~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 81 LSIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp EEECSCCGGGCEEEEEEEEC
T ss_pred EeecccCCCCCcEEEEeEcC
Confidence 99999999999999998764
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.06 E-value=6.3e-06 Score=68.26 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=52.1
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceEEE--ecCceEEEEEccCCCC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFTET--NNFGFVALDIMQCLPE 251 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~--~~~~~~~L~I~~~~~~ 251 (808)
.+|..+.+.+|++|+|.|.+.+.......+.|||. ++.+. ...++... .....+.|.|.+++.+
T Consensus 5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~ 84 (111)
T d1cd0a_ 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE 84 (111)
T ss_dssp ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence 34667889999999999998422222345899982 22210 12344433 3345779999999999
Q ss_pred CcEEEEEEEEeC
Q psy2145 252 DSGVYTCRAVNA 263 (808)
Q Consensus 252 D~G~Y~C~a~n~ 263 (808)
|+|.|.|.+.+.
T Consensus 85 Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 85 DEADYYCQSYDA 96 (111)
T ss_dssp GCEEEEEEEEET
T ss_pred cCcEEEEeeccC
Confidence 999999987653
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.06 E-value=6.9e-06 Score=68.02 Aligned_cols=75 Identities=21% Similarity=0.373 Sum_probs=54.3
Q ss_pred cCCCCccccCCCCcEEEEEEEeeC---CCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccC
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPV---TDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTI 116 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~---~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~ 116 (808)
..|..+ .+.+|++|+|.|..... ......+.||+ .|+. |. ...|+....++..++|.|.++.
T Consensus 7 Q~P~s~-~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~ 85 (113)
T d1n4xl_ 7 QTPLYL-PVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE 85 (113)
T ss_dssp EECSEE-EECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred CcCCEE-EECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence 446777 89999999999998631 12234689997 2221 11 1346666666777899999999
Q ss_pred cCCCeeEEEEEEe
Q psy2145 117 PEDSGTYTCRAVN 129 (808)
Q Consensus 117 ~~D~G~Y~C~a~n 129 (808)
.+|+|.|.|...+
T Consensus 86 ~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 86 AEDLGIYYCFQGS 98 (113)
T ss_dssp GGGCEEEEEEECS
T ss_pred cccCEEEEEEECC
Confidence 9999999996543
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.9e-06 Score=70.43 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=50.5
Q ss_pred cCceeecCCCeEEEEEEEeecC-----CCCeEEEEeeCCEEcc-----------------CCCceEEEe--cCceEEEEE
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVS-----DNTMKVEWFHNNVPIK-----------------SGSRFTETN--NFGFVALDI 245 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~-----~p~~~v~W~~~g~~l~-----------------~~~~~~~~~--~~~~~~L~I 245 (808)
+..+++.+|++|+|.|.+.... .....+.|++.+..-. ...|+.+.. ..+.++|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 4568899999999999984111 1235788998532110 012444433 235678999
Q ss_pred ccCCCCCcEEEEEEEEeC
Q psy2145 246 MQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~ 263 (808)
.+++.+|+|.|.|.+...
T Consensus 88 ~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 88 RDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp CSCCGGGCEEEEEEEEET
T ss_pred CCCChHHCEEEEEEEEeC
Confidence 999999999999999764
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.06 E-value=1.2e-05 Score=66.49 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=51.6
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc----------------CCCceEEEecCceEEEEEcc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK----------------SGSRFTETNNFGFVALDIMQ 247 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~----------------~~~~~~~~~~~~~~~L~I~~ 247 (808)
+...|..+.+.+|++|+|.|... + ....+.||| .|+.+. ...............|.|.+
T Consensus 4 V~Q~P~~~~~~~G~~vtl~C~~s--~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 80 (110)
T d2aq2a1 4 VTQSPRNKVAVTGEKVTLSCQQT--N-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES 80 (110)
T ss_dssp EEEECSEEEECTTCCEEEEEEES--S-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred EEEeCCeEEEcCCCCEEEEEEEC--C-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence 45567788899999999999873 2 345799999 232110 01112222334557899999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|+|.|.|.+..
T Consensus 81 ~~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 81 ATPSQTSVYFCASGG 95 (110)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CCHhhCEEEEEeeCC
Confidence 999999999998764
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.05 E-value=1.2e-05 Score=67.31 Aligned_cols=76 Identities=22% Similarity=0.469 Sum_probs=54.1
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc-----------------CCCceEEEe-cCceEEEEE
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK-----------------SGSRFTETN-NFGFVALDI 245 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~-----------------~~~~~~~~~-~~~~~~L~I 245 (808)
+...|..+.+.+|++|+|.|... +.....+.||| .|+.+. ...++.... ....+.|.|
T Consensus 4 v~Q~P~~~~~~~G~~v~L~C~~~--~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i 81 (118)
T d2ij0c1 4 VSQHPSMVIVKSGTSVKIECRSL--DTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTV 81 (118)
T ss_dssp EEEECSEEEECTTCCEEEEEEEC--SSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEE
T ss_pred EEEcCCeEEEcCCCCEEEEEEEc--CCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccc
Confidence 44567778899999999999983 44456799998 232110 123444443 334568999
Q ss_pred ccCCCCCcEEEEEEEEeC
Q psy2145 246 MQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n~ 263 (808)
.+++++|+|.|.|.+...
T Consensus 82 ~~~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 82 TSAHPEDSGFYVCSALAG 99 (118)
T ss_dssp CSCCGGGCEEEEEEEECS
T ss_pred cccccccCceEEEEEecC
Confidence 999999999999998653
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.05 E-value=1.5e-05 Score=66.01 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=54.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeec---CCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPV---SDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQC 248 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~ 248 (808)
++..|..+.+.+|++|+|.|..... ......+.||+. |+.. ....++.....+..++|.|.++
T Consensus 5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~ 84 (113)
T d1n4xl_ 5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 84 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence 4456777889999999999998421 122356899982 2211 1234566666667789999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
+.+|+|.|.|...+
T Consensus 85 ~~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 85 EAEDLGIYYCFQGS 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred CcccCEEEEEEECC
Confidence 99999999996544
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.05 E-value=8.6e-06 Score=67.30 Aligned_cols=72 Identities=11% Similarity=0.300 Sum_probs=51.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe---e-c-----------cCcEE-EEeeCCeEEEEEccc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV---T-I-----------GHRFR-PIHDFGYVALDIIDT 115 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l---~-~-----------~~r~~-~~~~~~~~~L~I~~~ 115 (808)
..|..+ .+.+|++|+|.|.... ....+.||| .|+.+ . . ..++. .......+.|.|.++
T Consensus 6 Q~P~~~-~~~~G~~vtl~C~~s~---~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (110)
T d2aq2a1 6 QSPRNK-VAVTGEKVTLSCQQTN---NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA 81 (110)
T ss_dssp EECSEE-EECTTCCEEEEEEESS---CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred EeCCeE-EEcCCCCEEEEEEECC---CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence 347777 8999999999998763 345799998 23211 1 0 12222 233456689999999
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
..+|+|.|.|.+..
T Consensus 82 ~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 82 TPSQTSVYFCASGG 95 (110)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CHhhCEEEEEeeCC
Confidence 99999999998764
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.03 E-value=1.5e-05 Score=65.67 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=53.6
Q ss_pred EEeecCceeecCCCeEEEEEEEee---cCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIP---VSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQC 248 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~---~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~ 248 (808)
++..|..+.+.+|++|+|.|.+.. .......+.||+. |+.+ ....++.....+..+.|.|.++
T Consensus 4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~ 83 (112)
T d1ncwl1 4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV 83 (112)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence 345577788999999999998731 1222345889982 2211 1234566555666678999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
+++|+|.|.|...+
T Consensus 84 ~~eDsAvYYC~~~~ 97 (112)
T d1ncwl1 84 EAEDLGVYYCWQGT 97 (112)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccCcCEeEEEEcCC
Confidence 99999999996543
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.03 E-value=1e-05 Score=64.59 Aligned_cols=64 Identities=27% Similarity=0.490 Sum_probs=46.0
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee--------ccCcEEEE--eeCCeEEEEEcccCcCCCeeEEEEEEe
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT--------IGHRFRPI--HDFGYVALDIIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~--------~~~r~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n 129 (808)
|++|+|.|.... .....+.||| .|+ .|. ...|+... .+...++|.|.+++++|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~~--~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYSD--RGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEECC--TTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEEcc--ccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 899999999874 4556799998 221 111 23455543 234557999999999999999999874
Q ss_pred c
Q psy2145 130 L 130 (808)
Q Consensus 130 ~ 130 (808)
.
T Consensus 79 ~ 79 (94)
T d2gj6d1 79 D 79 (94)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.01 E-value=6.6e-06 Score=69.02 Aligned_cols=77 Identities=18% Similarity=0.399 Sum_probs=55.1
Q ss_pred eecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEee--CCeEEEEEccc
Q psy2145 52 TVTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHD--FGYVALDIIDT 115 (808)
Q Consensus 52 ~~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~--~~~~~L~I~~~ 115 (808)
++..++.+ .+.+|++++|.|.+.+.......+.||| .|+. |. ...|+....+ ...+.|.|.++
T Consensus 4 vv~~~~sv-~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~ 82 (120)
T d1hxma1 4 LVPEHQTV-PVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP 82 (120)
T ss_dssp EEESCSEE-EEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred EeccCCCE-EECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence 35667777 8999999999999974211335799998 2221 11 1246665544 35689999999
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
+.+|+|.|.|....
T Consensus 83 ~~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 83 SERDEGSYYCACDT 96 (120)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred cccCCceeecCccc
Confidence 99999999998754
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.01 E-value=5.2e-06 Score=68.62 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=52.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---------ccCcEEEEee--CCeEEEEEcccC
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---------IGHRFRPIHD--FGYVALDIIDTI 116 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~--~~~~~L~I~~~~ 116 (808)
...|..+ .+.+|++|+|.|.... .....+.||| .|+. |. ...++....+ ...+.|.|.++.
T Consensus 4 tQ~p~~~-~~~~G~~vtl~C~~~~--~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~ 80 (110)
T d1ac6a_ 4 TQTEGQV-ALSEEDFLTIHCNYSA--SGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ 80 (110)
T ss_dssp EECCSEE-EEETTEEEEECEEEEC--SSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC
T ss_pred EeCCCeE-EECCCCCEEEEEEecC--CCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC
Confidence 3456677 8999999999999873 3334699998 2321 11 1234444322 345689999999
Q ss_pred cCCCeeEEEEEEec
Q psy2145 117 PEDSGTYTCRAVNL 130 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~ 130 (808)
.+|+|.|.|.+...
T Consensus 81 ~~Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 81 ESDSAVYYCALSGG 94 (110)
T ss_dssp GGGCEEEEEEEEET
T ss_pred cCCCcccceeecCC
Confidence 99999999988653
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.01 E-value=9e-06 Score=65.31 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=51.1
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCC---eEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSR---ITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
+||.+...+.. .+..|+.++|.|.+.+.-.+...|+|++||+.+..+.. .....++.+.......+..++.+.|+
T Consensus 2 ~pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~yt 79 (100)
T d1muja1 2 EAPQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYD 79 (100)
T ss_dssp CCCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEE
T ss_pred CCCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEE
Confidence 46666554333 25678999999999533345688999999998865321 11122223322333333456777899
Q ss_pred EEEEeCC
Q psy2145 579 CKATNAL 585 (808)
Q Consensus 579 C~a~N~~ 585 (808)
|++.+..
T Consensus 80 C~V~H~s 86 (100)
T d1muja1 80 CKVEHWG 86 (100)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 9999863
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.01 E-value=7e-06 Score=67.85 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=53.6
Q ss_pred cCCCCccccCCCCcEEEEEEEeeC--CCCCceEEEEe--CCEE---ee---------ccCcEEEEeeCCeEEEEEcccCc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPV--TDSNLKVEWFK--NGRP---VT---------IGHRFRPIHDFGYVALDIIDTIP 117 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~--~~p~~~v~W~~--~g~~---l~---------~~~r~~~~~~~~~~~L~I~~~~~ 117 (808)
..|..+ .+.+|++|+|.|..... ......+.||| .|+. |. ...++....+...+.|.|.+++.
T Consensus 6 QsP~~l-~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 84 (111)
T d1j05a_ 6 QSPASL-AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA 84 (111)
T ss_dssp EECSEE-ECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred ccCCEE-EECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence 347777 89999999999987521 11223499998 3321 21 12466666667778999999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|+|.|.|.+.+
T Consensus 85 ~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 85 DDVATYYCQQTN 96 (111)
T ss_dssp GGCEEEEEEECS
T ss_pred ccCccEEEeecC
Confidence 999999998754
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=7e-06 Score=67.25 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=51.6
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE----Eeec-----------cCcEEEEee--CCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--GR----PVTI-----------GHRFRPIHD--FGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~----~l~~-----------~~r~~~~~~--~~~~~L~I~~~~~~D~G 121 (808)
.+.||++|+|.|...+.........|+|. |+ .|.. ..|+.+..+ .+.++|+|.+++.+|+|
T Consensus 6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa 85 (110)
T d1u9ka_ 6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG 85 (110)
T ss_dssp EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCE
Confidence 68999999999998753234457889982 32 1111 246776654 56789999999999999
Q ss_pred eEEEEEEec
Q psy2145 122 TYTCRAVNL 130 (808)
Q Consensus 122 ~Y~C~a~n~ 130 (808)
.|.|...+.
T Consensus 86 ~YyCa~~~~ 94 (110)
T d1u9ka_ 86 LYRCVIYHP 94 (110)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 999998654
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.01 E-value=4.3e-06 Score=69.88 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=51.1
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc-------------CCCceEEE--ecCceEEEEEccCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK-------------SGSRFTET--NNFGFVALDIMQCL 249 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~-------------~~~~~~~~--~~~~~~~L~I~~~~ 249 (808)
+..+..+.+.+|++|+|.|... ......+.||| .|+.+. ...++... .......|.|.+++
T Consensus 4 tQ~p~~v~~~~G~~vtl~C~~s--~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1j8hd1 4 TQLGSHVSVSEGALVLLRCNYS--SSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH 81 (115)
T ss_dssp ECSCSEEEEETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred EcCCCeEEEcCCCCEEEEEEeC--CCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence 4456678899999999999984 44456799998 222110 01122222 12234479999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 250 PEDSGVYTCRAVNA 263 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~ 263 (808)
++|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 82 MSDAAEYFCAVSES 95 (115)
T ss_dssp GGGCEEEEEEEESS
T ss_pred ccCCccceeeecCC
Confidence 99999999999763
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=4e-06 Score=70.58 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=53.3
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeC----CCCCceEEEEeCC----EEee-----------ccCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPV----TDSNLKVEWFKNG----RPVT-----------IGHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~----~~p~~~v~W~~~g----~~l~-----------~~~r~~~~~~--~~~~~L~ 111 (808)
+..|..+ .+.+|++|+|.|.+... ......+.|++.+ ..+. ...|+.+..+ .+.++|.
T Consensus 4 V~~P~~v-~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (118)
T d1qfoa_ 4 VSSPKNV-QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLL 82 (118)
T ss_dssp EECCSEE-EEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEE
T ss_pred EECCCEE-EEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEE
Confidence 4568888 89999999999998621 1122356788732 1111 1245665433 3567899
Q ss_pred EcccCcCCCeeEEEEEEec
Q psy2145 112 IIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n~ 130 (808)
|.+++.+|+|.|.|++...
T Consensus 83 I~~v~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 83 LKDLKPEDSGTYNFRFEIS 101 (118)
T ss_dssp ECSCCGGGCEEEEEEEECC
T ss_pred ECCCChhHCEEEEEEEEeC
Confidence 9999999999999999754
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.00 E-value=1.1e-05 Score=66.75 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=52.1
Q ss_pred EeecCceeecCCCeEEEEEEEeec---CCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPV---SDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCL 249 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~ 249 (808)
+..|..+.+.+|++|+|.|.+.+. ......+.||+. |+.. ....++.....+....|.|.+++
T Consensus 5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~ 84 (112)
T d1mjul1 5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE 84 (112)
T ss_dssp ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence 345667888999999999997421 122456899982 2211 11335556666677789999999
Q ss_pred CCCcEEEEEEE
Q psy2145 250 PEDSGVYTCRA 260 (808)
Q Consensus 250 ~~D~G~Y~C~a 260 (808)
.+|+|.|.|..
T Consensus 85 ~~DsAvYyCa~ 95 (112)
T d1mjul1 85 AEDVGVYYCLQ 95 (112)
T ss_dssp GGGCEEEEEEE
T ss_pred ccCCceEEEEe
Confidence 99999999953
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=1.7e-05 Score=63.89 Aligned_cols=81 Identities=14% Similarity=0.315 Sum_probs=54.4
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE-Ee-cCceEEEEEccCCCCCcEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE-TN-NFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~-~~-~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
.+|.+.+-+.. .+..|+.++|.|.+.+.-.+...|+|++||..+........ .. ++.+.......+..++.+.|+|+
T Consensus 3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~ 81 (99)
T d1lk2b_ 3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 81 (99)
T ss_dssp BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence 46776654432 24568899999999875556789999999999876443222 22 33333344444556777899999
Q ss_pred EEeC
Q psy2145 260 AVNA 263 (808)
Q Consensus 260 a~n~ 263 (808)
+.+.
T Consensus 82 V~H~ 85 (99)
T d1lk2b_ 82 VKHD 85 (99)
T ss_dssp EECT
T ss_pred EEeC
Confidence 9885
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.99 E-value=1.3e-05 Score=66.06 Aligned_cols=76 Identities=25% Similarity=0.318 Sum_probs=53.4
Q ss_pred EeecCceeecCCCeEEEEEEEeec--CCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPV--SDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLP 250 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~ 250 (808)
+..|..+.+.+|++|+|.|.+... ......+.||| .|+.+ ....++....+...+.|.|.+++.
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 84 (111)
T d1j05a_ 5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA 84 (111)
T ss_dssp EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence 445677888999999999987311 11233499998 23321 123355555566678999999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|+|.|.|.+.+
T Consensus 85 ~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 85 DDVATYYCQQTN 96 (111)
T ss_dssp GGCEEEEEEECS
T ss_pred ccCccEEEeecC
Confidence 999999998754
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=2.9e-05 Score=61.87 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=52.4
Q ss_pred CCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CC-E---EEEEEccCCCCCcEE
Q psy2145 634 EKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FG-Y---VTLDITKCVPADSGV 708 (808)
Q Consensus 634 ~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~-~---~~L~I~~v~~~D~G~ 708 (808)
.+|.+.... ...|+.++|.|.+. .+.|.+.|.|++||+.+........... +| + +.|.|. ..+...
T Consensus 4 ~~P~V~~~~-----~~s~~~~~L~C~~~-g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~ 74 (95)
T d1dr9a2 4 PTPSISDFE-----IPTSNIRRIICSTS-GGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHS 74 (95)
T ss_dssp CCCEEEEEE-----CSSTTEEEEEEEEE-EESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEE
T ss_pred CCCEEEecc-----cCCCCEEEEEEEEC-cccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccce
Confidence 346655332 23578899999994 3479999999999998875433222221 22 2 345554 456779
Q ss_pred EEEEEEeCCcceEE
Q psy2145 709 YMCKAINRAGEAVS 722 (808)
Q Consensus 709 Y~C~A~N~~G~~~~ 722 (808)
|+|.+....-....
T Consensus 75 ~tC~V~h~~l~~~~ 88 (95)
T d1dr9a2 75 FMCLIKYGHLRVNQ 88 (95)
T ss_dssp EEEEEEETTCCEEE
T ss_pred EEEEEEecCCCCcE
Confidence 99999888655443
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=3.6e-06 Score=69.21 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred ccccCCceEEEEEEEeeCCCC---CeEEEEEECCEEccC------------CCcEEEEEeCCEEEEEEccCCCCCcEEEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVGDP---TMRFEWFVNGVELKM------------GSRFHVQHDFGYVTLDITKCVPADSGVYM 710 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g~P---~p~i~W~~~g~~l~~------------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 710 (808)
+++..|++|+|.|.+.. +.. ...+.|.+++..+.. ..|..+.. .+..+|.|.+++.+|+|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~-~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~ 81 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNV-SVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE 81 (105)
T ss_dssp EEEETTSCEEECCSCCC-CTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred EEEEeCCCEEEEEEECC-cccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEE
Confidence 45778999999998732 221 257899998866521 13333332 34468999999999999999
Q ss_pred EEEEeCCc
Q psy2145 711 CKAINRAG 718 (808)
Q Consensus 711 C~A~N~~G 718 (808)
|.+.+..+
T Consensus 82 C~V~~~~~ 89 (105)
T d1dr9a1 82 CVVLKYEK 89 (105)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCC
Confidence 99886544
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.98 E-value=1.7e-05 Score=66.29 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=52.4
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCC-CCceEEEEe--CCEEee--------------ccCc-EEEEeeCCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTD-SNLKVEWFK--NGRPVT--------------IGHR-FRPIHDFGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~-p~~~v~W~~--~g~~l~--------------~~~r-~~~~~~~~~~~L~I~~ 114 (808)
+.+|..+ .+.+|++|+|.|....... ....+.||| .|+.+. .+.+ .....+...+.|.|.+
T Consensus 3 VtQP~~~-~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 81 (117)
T d1dqta_ 3 VTQPSVV-LASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQG 81 (117)
T ss_dssp EECCSEE-ECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECS
T ss_pred EECCCEE-EEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhc
Confidence 4567777 8999999999999864112 223578998 333211 0111 1234456678999999
Q ss_pred cCcCCCeeEEEEEEe
Q psy2145 115 TIPEDSGTYTCRAVN 129 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n 129 (808)
++.+|+|.|.|.+..
T Consensus 82 l~~~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 82 LRAVDTGLYLCKVEL 96 (117)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CccccCEeEEEEEec
Confidence 999999999998864
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.97 E-value=1.2e-05 Score=66.75 Aligned_cols=74 Identities=11% Similarity=0.256 Sum_probs=50.6
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee---c------------cCcEEEE-eeCCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT---I------------GHRFRPI-HDFGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~---~------------~~r~~~~-~~~~~~~L~I~~ 114 (808)
...|..+ .+.+|++|+|.|.... ....+.||| .|..+. . ..++... .+...+.|.|.+
T Consensus 4 ~QsP~~~-~~~~G~~v~l~C~~~~---~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 79 (113)
T d1j8he1 4 TQSSRYL-VKRTGEKVFLECVQDM---DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILES 79 (113)
T ss_dssp EESCSEE-EEETTCCEEECEEESS---CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESS
T ss_pred EccCCEE-EECCCCCEEEEEEEcC---CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEecc
Confidence 3457777 8999999999998652 345788998 232211 0 1223222 233456899999
Q ss_pred cCcCCCeeEEEEEEec
Q psy2145 115 TIPEDSGTYTCRAVNL 130 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n~ 130 (808)
+..+|+|.|.|.+...
T Consensus 80 ~~~~Dsa~YyCa~~~~ 95 (113)
T d1j8he1 80 ASTNQTSMYLCASSST 95 (113)
T ss_dssp CCGGGCEEEEEEEECT
T ss_pred CccCCcccEEeeEccC
Confidence 9999999999998743
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.96 E-value=1.6e-05 Score=66.84 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=53.5
Q ss_pred ecCCC-CccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee--------------ccCcEEEEee--CCeEEE
Q psy2145 53 VTKPK-SIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT--------------IGHRFRPIHD--FGYVAL 110 (808)
Q Consensus 53 ~~~p~-~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~--------------~~~r~~~~~~--~~~~~L 110 (808)
+.+|+ ++ .+.+|++++|.|.+.+..-....+.||| .|+. |. ...||.+..+ ...+.|
T Consensus 4 l~Qp~~s~-t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L 82 (123)
T d1hxmb1 4 LEQPQISS-TKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (123)
T ss_dssp EECCCSEE-EEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred eECCCCeE-EeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceee
Confidence 34444 45 7889999999999986332345789998 2211 11 1246776654 356789
Q ss_pred EEcccCcCCCeeEEEEEEe
Q psy2145 111 DIIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 111 ~I~~~~~~D~G~Y~C~a~n 129 (808)
.|.++..+|+|.|.|.+..
T Consensus 83 ~i~~l~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 83 TIHNVEKQDIATYYCALWE 101 (123)
T ss_dssp EECSCCGGGCEEEEEEEEE
T ss_pred cccccccccCcEEEEeeeC
Confidence 9999999999999998754
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=5.8e-06 Score=68.58 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=49.4
Q ss_pred ccCCCCcEEEEEEEeeCCC-CCce--EEEEeCCE-Eeec-----------cCcE--EEEeeCCeEEEEEcccCcCCCeeE
Q psy2145 61 NLRERGHAHFECKLEPVTD-SNLK--VEWFKNGR-PVTI-----------GHRF--RPIHDFGYVALDIIDTIPEDSGTY 123 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~-p~~~--v~W~~~g~-~l~~-----------~~r~--~~~~~~~~~~L~I~~~~~~D~G~Y 123 (808)
.+..|++|+|.|.+..... +... +.|.+++. .+.. +.+| +.....+.++|.|.+++.+|+|.|
T Consensus 5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y 84 (110)
T d1ncna_ 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLY 84 (110)
T ss_dssp EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEE
T ss_pred EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEE
Confidence 6788999999999874211 2223 34444332 2110 1111 122334456899999999999999
Q ss_pred EEEEEecC--cc---eEEEEEEEEe
Q psy2145 124 TCRAVNLV--GF---AEVQATLQCR 143 (808)
Q Consensus 124 ~C~a~n~~--g~---~~~~~~l~V~ 143 (808)
.|.+.... |. ....+.|.|.
T Consensus 85 ~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 85 QCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp EEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEEEecCCCceEEEEcceEEEEEE
Confidence 99997443 32 1345555553
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.96 E-value=1.1e-05 Score=67.00 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=56.3
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCce--EEEecCceEEEEEccCCC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRF--TETNNFGFVALDIMQCLP 250 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~--~~~~~~~~~~L~I~~~~~ 250 (808)
...|..+.+.+|++|+|.|... + ....+.||| .|..+ ....++ .........+|.|.+++.
T Consensus 4 ~Q~P~~~~~~~G~svtl~C~~s--~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (115)
T d1ogad1 4 EQSPQFLSIQEGENLTVYCNSS--S-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP 80 (115)
T ss_dssp EEECSEEEEETTCCEEEEEECS--S-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG
T ss_pred EeCCCeEEECCCCCEEEEEEEC--C-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc
Confidence 3456678899999999999973 3 234689998 22211 011222 223334567899999999
Q ss_pred CCcEEEEEEEEeCceeEE--EEEEEEEe
Q psy2145 251 EDSGVYTCRAVNALGQAV--TSGNLLVH 276 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~g~~~--~~~~l~V~ 276 (808)
+|+|.|.|.+....+... .-..|+|.
T Consensus 81 ~Dsa~YyCa~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 81 GDTGLYLCAGAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp GGCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred cceeeEcccccCCCCCcEECCCEEEEEe
Confidence 999999998875433221 12456664
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.95 E-value=2.8e-05 Score=62.40 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=56.8
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+.||.+...+.. .|..|++|+|.|+. ..+...+.|+|+|...... +.......+...+.|..+...|+|.|+|.
T Consensus 4 ~pkPsLsa~P~~--~V~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~ 77 (99)
T d1nkra2 4 YEKPSLSAQPGP--TVLAGENVTLSCSS---RSSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCF 77 (99)
T ss_dssp SCCCEEEEESCS--EECTTCEEEEEEEE---SSCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEE
T ss_pred CCCCEEEEeCCC--cccCCCeEEEEECC---CCCccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEE
Confidence 457888777653 68899999999987 5677899999999643211 11112345566788888889999999998
Q ss_pred EEeC
Q psy2145 713 AINR 716 (808)
Q Consensus 713 A~N~ 716 (808)
-...
T Consensus 78 y~~~ 81 (99)
T d1nkra2 78 GSFH 81 (99)
T ss_dssp EEET
T ss_pred eecC
Confidence 6544
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.95 E-value=1.6e-05 Score=63.35 Aligned_cols=64 Identities=30% Similarity=0.581 Sum_probs=46.7
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE--CCEE---c--------cCCCcEEEEEe--CCEEEEEEccCCCCCcEEEEEEEEe
Q psy2145 651 GQSAHYDCRVVPVGDPTMRFEWFV--NGVE---L--------KMGSRFHVQHD--FGYVTLDITKCVPADSGVYMCKAIN 715 (808)
Q Consensus 651 G~~v~l~C~v~~~g~P~p~i~W~~--~g~~---l--------~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N 715 (808)
|++|+|.|.. .+.....+.||+ .|.. | ....++....+ ....+|.|.++..+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~--~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTY--SDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEE--CCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEE--ccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 7899999998 566677899997 2211 1 11245655432 4468999999999999999998875
Q ss_pred C
Q psy2145 716 R 716 (808)
Q Consensus 716 ~ 716 (808)
.
T Consensus 79 ~ 79 (94)
T d2gj6d1 79 D 79 (94)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.7e-05 Score=63.79 Aligned_cols=83 Identities=13% Similarity=0.374 Sum_probs=52.0
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC--CeEEEeeCcEEEEEECCCCCCCCEEEE
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS--RITTKHDFGYVAMDLSHVRAEDEGIYI 578 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 578 (808)
..+|........ .+..|+.++|.|.+.+.-.+...|+|++||+.+.... ......++.+.......+..+|.+.|+
T Consensus 3 ~~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~yt 80 (100)
T d1k5nb_ 3 QRTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA 80 (100)
T ss_dssp CBCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEE
T ss_pred cCCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEE
Confidence 345665543222 2467899999999953223456899999999986532 122223333333333344566778999
Q ss_pred EEEEeCC
Q psy2145 579 CKATNAL 585 (808)
Q Consensus 579 C~a~N~~ 585 (808)
|.+.+..
T Consensus 81 C~V~H~s 87 (100)
T d1k5nb_ 81 CRVNHVT 87 (100)
T ss_dssp EEEECTT
T ss_pred EEEEeCC
Confidence 9999864
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.95 E-value=7.7e-06 Score=67.03 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=52.5
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCCCcE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPEDSG 254 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 254 (808)
+|..+.+.+|++|+|.|.. .......+.|||. |+.+ ....++....+....+|.|.+++.+|+|
T Consensus 6 Qp~sl~~~~G~svtl~C~~--~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 83 (109)
T d1w72l1 6 QPPSVSVAPGQTARITCGG--NNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEA 83 (109)
T ss_dssp CCSEEEECTTSCEEEEEEC--TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eCCeEEECCCCCEEEEEEc--CCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCE
Confidence 3345778899999999997 3334456899982 2211 1134555555667779999999999999
Q ss_pred EEEEEEEeC
Q psy2145 255 VYTCRAVNA 263 (808)
Q Consensus 255 ~Y~C~a~n~ 263 (808)
.|.|.+...
T Consensus 84 vYyCA~~~~ 92 (109)
T d1w72l1 84 DYYCQVWDS 92 (109)
T ss_dssp EEEEEEEET
T ss_pred EEEEEecCC
Confidence 999998653
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.3e-05 Score=63.94 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=54.9
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCK 712 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 712 (808)
+.+|.+...+.. .|..|++|+|.|.. .......+.|+|+|..... .. ........+.|.+++.+|+|.|+|.
T Consensus 3 ~PkP~Lsa~P~~--~V~~G~~VTL~C~~--~~~~~~~f~L~k~g~~~~~--~~--~~~~~~a~F~l~~v~~~~~G~Y~C~ 74 (96)
T d1ucta2 3 YGKPFLSADRGL--VLMPGENISLTCSS--AHIPFDRFSLAKEGELSLP--QH--QSGEHPANFSLGPVDLNVSGIYRCY 74 (96)
T ss_dssp SCCCEEEESSCS--EECTTCCCEEEEEC--SSSCCSEEEEEETTCSSCC--SE--EECSSSEEEECCSCCGGGCEEEEEE
T ss_pred CCCCEEEEeCCC--ccCCCCeEEEEEeC--CCCCceEEEEEECCcccce--EE--cCCCcccEEEEeccccccCcEEEEE
Confidence 346877776643 68899999999975 2345568999999963322 11 1123346899999999999999998
Q ss_pred EEeC
Q psy2145 713 AINR 716 (808)
Q Consensus 713 A~N~ 716 (808)
....
T Consensus 75 y~~~ 78 (96)
T d1ucta2 75 GWYN 78 (96)
T ss_dssp EECT
T ss_pred EEcC
Confidence 7654
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.94 E-value=6.8e-06 Score=68.59 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=52.7
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---------cCCCceEEEecCceEEEEEccCCCCCc
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---------KSGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
..|..+.+.+|++|+|.|... ......+.|||. |.. | ....++........+.|.|.+++++|+
T Consensus 6 Q~P~sv~~~~G~svtl~C~~s--~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds 83 (119)
T d1f3rb2 6 QSPSLLSASVGDRVTLSCKGS--QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV 83 (119)
T ss_dssp EETSEECCCTTCCEEEEEECS--SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred ccCCEEEECCCCCEEEEEEeC--CCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence 356677899999999999873 444456899983 221 1 123455555555667899999999999
Q ss_pred EEEEEEEEe
Q psy2145 254 GVYTCRAVN 262 (808)
Q Consensus 254 G~Y~C~a~n 262 (808)
|.|.|.+.+
T Consensus 84 avYyCa~~~ 92 (119)
T d1f3rb2 84 ATYFCYQYN 92 (119)
T ss_dssp SEEEEEEES
T ss_pred eEEEeeccC
Confidence 999998754
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.94 E-value=2.1e-05 Score=63.32 Aligned_cols=70 Identities=23% Similarity=0.473 Sum_probs=45.6
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc---EEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
+..|+.++|.|.+.++-.+...|+|++||+++..+.. .....++.+.......+...+...|+|++.+..
T Consensus 16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s 88 (101)
T d1fnga1 16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWG 88 (101)
T ss_dssp CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECC
Confidence 3467889999999986455679999999999875421 111223333222233334455668999998863
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.94 E-value=1.6e-05 Score=65.74 Aligned_cols=71 Identities=20% Similarity=0.383 Sum_probs=49.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee-------------ccCcEEEEee-CCeEEEEEccc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT-------------IGHRFRPIHD-FGYVALDIIDT 115 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~-------------~~~r~~~~~~-~~~~~L~I~~~ 115 (808)
.|..+ .+.+|++|+|.|.... ....+.||| .|+. |. ...++..... ...++|.|.++
T Consensus 5 ~P~~~-~~~~G~svtl~C~~~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~ 80 (111)
T d2esve1 5 FPSHS-VIEKGQTVTLRCDPIS---GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA 80 (111)
T ss_dssp ECSEE-EEETTCCEEEEEECCT---TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred CCCEE-EECCCCCEEEEEEECC---CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence 36666 8999999999998652 345799997 2221 11 1234544332 34478999999
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
..+|+|.|.|.+..
T Consensus 81 ~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 81 ELEDSGVYFCASSQ 94 (111)
T ss_dssp CGGGCEEEEEEEES
T ss_pred ccCCCceEEEeeeC
Confidence 99999999998764
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.93 E-value=2e-05 Score=63.20 Aligned_cols=82 Identities=20% Similarity=0.388 Sum_probs=51.5
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc---eEEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR---FTETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
.+|.+.+.+.. ....|+..+|.|.+.+...+...|+|++||..+..+.. .....++.+..+....+..++...|+|
T Consensus 3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC 81 (98)
T d1d5mb1 3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTC 81 (98)
T ss_dssp BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence 35666654433 23456778999999876666789999999999865421 122233344455555677888889999
Q ss_pred EEEeCc
Q psy2145 259 RAVNAL 264 (808)
Q Consensus 259 ~a~n~~ 264 (808)
+|.+..
T Consensus 82 ~V~H~s 87 (98)
T d1d5mb1 82 QVEHPS 87 (98)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 999853
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.93 E-value=1.6e-05 Score=65.79 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=52.7
Q ss_pred ecCceeecCCCeEEEEEEEeecC-CCCeEEEEeeC--CEEc------------cCCCceEEEecCceEEEEEccCCCCCc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVS-DNTMKVEWFHN--NVPI------------KSGSRFTETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~-~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 253 (808)
+|..+.+.+|++|+|.|...... .....+.|||. |+.+ ....++..........|.|.+++++|+
T Consensus 6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 85 (112)
T d1lgva1 6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE 85 (112)
T ss_dssp CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence 35567899999999999974211 12345899982 2211 123455555556677999999999999
Q ss_pred EEEEEEEEeC
Q psy2145 254 GVYTCRAVNA 263 (808)
Q Consensus 254 G~Y~C~a~n~ 263 (808)
|.|.|.+.+.
T Consensus 86 a~YyCa~~~~ 95 (112)
T d1lgva1 86 ADYYCSSYDG 95 (112)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEeeecC
Confidence 9999988753
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.92 E-value=1.4e-05 Score=66.84 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee-------------ccCcEEEEee--CCeEEEEEccc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT-------------IGHRFRPIHD--FGYVALDIIDT 115 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~-------------~~~r~~~~~~--~~~~~L~I~~~ 115 (808)
|..+ .+.+|++|+|.|.+.+.......+.||| .|+ .|. ...|+.+..+ ...+.|.|.++
T Consensus 8 ~~sv-~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l 86 (120)
T d1ypzf1 8 EISI-SRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (120)
T ss_dssp CSEE-EEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred CCEE-EecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence 3455 7889999999999864211234689998 221 121 1135555443 45678999999
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
+.+|+|.|.|.+..
T Consensus 87 ~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 87 EEEDEAIYYCSYGE 100 (120)
T ss_dssp CGGGCSEEEEEECC
T ss_pred ccccceeEEEEEcC
Confidence 99999999997753
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.92 E-value=1.1e-05 Score=67.77 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=50.4
Q ss_pred ecCceeecCCCeEEEEEEEeec----CCCCeEEEEeeCCE----Ec-----------cCCCceEEEe--cCceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPV----SDNTMKVEWFHNNV----PI-----------KSGSRFTETN--NFGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~----~~p~~~v~W~~~g~----~l-----------~~~~~~~~~~--~~~~~~L~I~~ 247 (808)
.|+.+.+.+|++|+|.|.+... ......+.|++.+. .+ ....++.+.. ..+.++|.|.+
T Consensus 6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 4567889999999999998411 11234567877321 11 1123444433 23567899999
Q ss_pred CCCCCcEEEEEEEEeC
Q psy2145 248 CLPEDSGVYTCRAVNA 263 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~ 263 (808)
++.+|+|.|.|++...
T Consensus 86 v~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 86 LKPEDSGTYNFRFEIS 101 (118)
T ss_dssp CCGGGCEEEEEEEECC
T ss_pred CChhHCEEEEEEEEeC
Confidence 9999999999999764
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.92 E-value=2.8e-05 Score=62.56 Aligned_cols=82 Identities=21% Similarity=0.415 Sum_probs=51.6
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc---eEEEecCceEEEEEccCCCCCcEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR---FTETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
..+|.+.+.+.. .+..|+.++|.|.+.+.-.....|+|++||+++..+.. .....++.+.......+...+...|+
T Consensus 3 ~v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~yt 81 (101)
T d1fnga1 3 NVAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYD 81 (101)
T ss_dssp CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEE
T ss_pred CcCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEE
Confidence 347777665433 24568889999999875555789999999999865421 11122322222222233345556899
Q ss_pred EEEEeC
Q psy2145 258 CRAVNA 263 (808)
Q Consensus 258 C~a~n~ 263 (808)
|++.+.
T Consensus 82 C~V~H~ 87 (101)
T d1fnga1 82 CEVDHW 87 (101)
T ss_dssp EEEECT
T ss_pred EEEEEC
Confidence 999885
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.91 E-value=2.5e-05 Score=62.34 Aligned_cols=82 Identities=12% Similarity=0.266 Sum_probs=54.1
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce---EEEecCceEEEEEccCCCCCcEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF---TETNNFGFVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C 258 (808)
.||.+.+.+.. .+..++.++|.|.+.+.-.+...|+|++||+.+..+... ....++.+.......+..++...|+|
T Consensus 2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC 80 (98)
T d1hdmb1 2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTC 80 (98)
T ss_dssp BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEE
T ss_pred CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEE
Confidence 36776665433 355678899999998766678999999999998654321 22223333333333445666678999
Q ss_pred EEEeCc
Q psy2145 259 RAVNAL 264 (808)
Q Consensus 259 ~a~n~~ 264 (808)
.+.+..
T Consensus 81 ~V~H~s 86 (98)
T d1hdmb1 81 VVEHIG 86 (98)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 999853
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.91 E-value=1.9e-05 Score=65.56 Aligned_cols=74 Identities=12% Similarity=0.299 Sum_probs=49.8
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------C---------CCceE-EEecCceEEEEEcc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------S---------GSRFT-ETNNFGFVALDIMQ 247 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------~---------~~~~~-~~~~~~~~~L~I~~ 247 (808)
+...|..+.+.+|++|+|.|... .....+.||| .|..+. . ..++. ...+...+.|.|.+
T Consensus 3 V~QsP~~~~~~~G~~v~l~C~~~---~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 79 (113)
T d1j8he1 3 VTQSSRYLVKRTGEKVFLECVQD---MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILES 79 (113)
T ss_dssp EEESCSEEEEETTCCEEECEEES---SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESS
T ss_pred EEccCCEEEECCCCCEEEEEEEc---CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEecc
Confidence 34456677889999999999873 2345688998 222110 0 11222 22233445799999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 80 ASTNQTSMYLCASSS 94 (113)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred CccCCcccEEeeEcc
Confidence 999999999999875
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.90 E-value=1.3e-05 Score=66.56 Aligned_cols=76 Identities=25% Similarity=0.496 Sum_probs=50.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------CC----CceE---EEecCceEEEEEccCCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------SG----SRFT---ETNNFGFVALDIMQCLP 250 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------~~----~~~~---~~~~~~~~~L~I~~~~~ 250 (808)
+...|..+.+.+|++|+|.|... . ....+.|||. |..+. .. .... .......++|.|.+++.
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~--~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFT--T-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL 80 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEES--S-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG
T ss_pred eEECCCEEEEcCCCCEEEEEEEe--c-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH
Confidence 34467778899999999999983 3 3446899992 22110 00 0000 11123456899999999
Q ss_pred CCcEEEEEEEEeCc
Q psy2145 251 EDSGVYTCRAVNAL 264 (808)
Q Consensus 251 ~D~G~Y~C~a~n~~ 264 (808)
+|+|.|.|.+....
T Consensus 81 ~Dsa~YyCa~~~~~ 94 (113)
T d1h5ba_ 81 EDSGTYFCAAEASS 94 (113)
T ss_dssp GGCEEEEEEEECSS
T ss_pred hHCEEEEEEecCCC
Confidence 99999999987543
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=8.1e-06 Score=67.68 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=51.0
Q ss_pred ccccCCceEEEEEEEeeCC-CCCe--EEEEEECCEE-c---------c--CCCcEE--EEEeCCEEEEEEccCCCCCcEE
Q psy2145 646 SEIMEGQSAHYDCRVVPVG-DPTM--RFEWFVNGVE-L---------K--MGSRFH--VQHDFGYVTLDITKCVPADSGV 708 (808)
Q Consensus 646 ~~v~~G~~v~l~C~v~~~g-~P~p--~i~W~~~g~~-l---------~--~~~~~~--~~~~~~~~~L~I~~v~~~D~G~ 708 (808)
+.+..|++|+|.|.+.+.. .+.. .+.|.+++.. + . ...+|. .....+..+|.|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 3577899999999984222 2222 3445454321 1 0 011221 2233445689999999999999
Q ss_pred EEEEEEeC--Ccc---eEEEEEEEEE
Q psy2145 709 YMCKAINR--AGE---AVSSTSLKVK 729 (808)
Q Consensus 709 Y~C~A~N~--~G~---~~~s~~l~V~ 729 (808)
|.|.+... .|. ..+.+.|.|.
T Consensus 84 Y~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 84 YQCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEcceEEEEEE
Confidence 99998644 343 2556677775
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.90 E-value=1.4e-05 Score=66.28 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=50.8
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceEEEecCceEEEEEccCCCCCcE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFTETNNFGFVALDIMQCLPEDSG 254 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G 254 (808)
.|..+.+.+|++|+|.|...+ ......+.|||. |+.+. ...++....+.....|.|.+++.+|+|
T Consensus 4 qP~~~~~~~G~svtl~C~~s~-~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa 82 (112)
T d1kgcd1 4 QPNSMESNEEEPVHLPCNHST-ISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA 82 (112)
T ss_dssp CCSEEEEETTSCEEEEEEESC-CCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred CCCEEEECCCCCEEEEEEEeC-CCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence 455678899999999999842 222345899992 32211 112334444556678999999999999
Q ss_pred EEEEEEEe
Q psy2145 255 VYTCRAVN 262 (808)
Q Consensus 255 ~Y~C~a~n 262 (808)
.|.|.+..
T Consensus 83 ~YyCa~~~ 90 (112)
T d1kgcd1 83 VYYCILPL 90 (112)
T ss_dssp EEEEECCC
T ss_pred eEeeeEec
Confidence 99998753
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.90 E-value=2.4e-05 Score=64.63 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=49.8
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc----------------CCCceEEEec-CceEEEEEccC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK----------------SGSRFTETNN-FGFVALDIMQC 248 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~----------------~~~~~~~~~~-~~~~~L~I~~~ 248 (808)
..|..+.+.+|++|+|.|... + ....+.|||. |+.+. ...++..... ...++|.|.++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~--~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~ 80 (111)
T d2esve1 4 QFPSHSVIEKGQTVTLRCDPI--S-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA 80 (111)
T ss_dssp EECSEEEEETTCCEEEEEECC--T-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred ECCCEEEECCCCCEEEEEEEC--C-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence 456678899999999999862 2 3457999982 22110 1233443332 33468999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
+.+|+|.|.|.+..
T Consensus 81 ~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 81 ELEDSGVYFCASSQ 94 (111)
T ss_dssp CGGGCEEEEEEEES
T ss_pred ccCCCceEEEeeeC
Confidence 99999999998764
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=5e-05 Score=55.31 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=43.6
Q ss_pred cCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEeCCEEEEEEccCCCCCcEEEEEEEE
Q psy2145 649 MEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHDFGYVTLDITKCVPADSGVYMCKAI 714 (808)
Q Consensus 649 ~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 714 (808)
..|..+.|.|.......+.---.|.|||+.|..+.. .+....+.|.. .+|+|+|.|+--
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl 68 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL 68 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence 358899999999644444456789999999987533 13344677765 789999999954
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=2.7e-05 Score=61.69 Aligned_cols=78 Identities=12% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCC----ceEEEecCceEEEEEccCCCCCcEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGS----RFTETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
.||.+.+.. ...++.++|.|.+.+.-.+...|+|++||+.+..+. ......++.+.......+...|...|+
T Consensus 3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt 78 (94)
T d1de4a1 3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT 78 (94)
T ss_dssp BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence 467776522 224678999999986555678999999999985431 112222333333334445556777899
Q ss_pred EEEEeC
Q psy2145 258 CRAVNA 263 (808)
Q Consensus 258 C~a~n~ 263 (808)
|++.+.
T Consensus 79 C~V~H~ 84 (94)
T d1de4a1 79 CQVEHP 84 (94)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999985
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.89 E-value=2.3e-05 Score=65.61 Aligned_cols=77 Identities=14% Similarity=0.311 Sum_probs=53.0
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceEEEe--cCceEEEEEccCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFTETN--NFGFVALDIMQCL 249 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~--~~~~~~L~I~~~~ 249 (808)
++..+..+.+.+|++++|.|.+.+.......+.|||. |+.+. ...++.... ....+.|.|.+++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence 4445667789999999999999532223457999982 22110 123554443 2356799999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
++|+|.|.|....
T Consensus 84 ~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 84 ERDEGSYYCACDT 96 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccCCceeecCccc
Confidence 9999999998754
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.89 E-value=1.3e-05 Score=65.64 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=52.4
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------------cCCCceEEEecCceEEEEEccCCCCCcE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------------KSGSRFTETNNFGFVALDIMQCLPEDSG 254 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 254 (808)
+|..+.+.+|++|+|.|.. .......+.||| .|+.+ ....++....+.....|.|.+++++|+|
T Consensus 5 QP~s~~~~~G~svtl~C~~--~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa 82 (108)
T d1nfde1 5 QPSSASVTVGETVKITCSG--DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA 82 (108)
T ss_dssp CCSEEEEETTSCCCEEEEE--TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred CCCeeEECCCCCEEEEEEC--CCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCc
Confidence 3556778899999999987 333344689998 23211 0123566666666779999999999999
Q ss_pred EEEEEEEe
Q psy2145 255 VYTCRAVN 262 (808)
Q Consensus 255 ~Y~C~a~n 262 (808)
.|.|.+..
T Consensus 83 ~YyCA~~~ 90 (108)
T d1nfde1 83 AYYCLSSY 90 (108)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeec
Confidence 99998764
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.88 E-value=1.8e-05 Score=65.30 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=51.7
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------------CCCceEEEe--cCceEEEEEccCC
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------------SGSRFTETN--NFGFVALDIMQCL 249 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~~~~~~~--~~~~~~L~I~~~~ 249 (808)
+...+..+.+.+|++|+|.|... ......+.||| .|+.+. ...++.... ......|.|.++.
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~--~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~ 80 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYS--ASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ 80 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEE--CSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC
T ss_pred eEeCCCeEEECCCCCEEEEEEec--CCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC
Confidence 34456678899999999999984 33445699998 232110 112333322 2234579999999
Q ss_pred CCCcEEEEEEEEeC
Q psy2145 250 PEDSGVYTCRAVNA 263 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~ 263 (808)
++|+|.|.|.+...
T Consensus 81 ~~Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 81 ESDSAVYYCALSGG 94 (110)
T ss_dssp GGGCEEEEEEEEET
T ss_pred cCCCcccceeecCC
Confidence 99999999988754
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.88 E-value=6.2e-05 Score=60.29 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 260 (808)
..+|.+...|.. .|..|++|+|.|.. ..+...+.|+|+|........ ......+...+.|..+...|+|.|+|..
T Consensus 4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~G~Y~C~y 78 (99)
T d1nkra2 4 YEKPSLSAQPGP-TVLAGENVTLSCSS---RSSYDMYHLSREGEAHERRLP-AGPKVNGTFQADFPLGPATHGGTYRCFG 78 (99)
T ss_dssp SCCCEEEEESCS-EECTTCEEEEEEEE---SSCCSEEEEEETTCSSCEEEE-CEEEETTEEEEEEEEEECCSCEEEEEEE
T ss_pred CCCCEEEEeCCC-cccCCCeEEEEECC---CCCccEEEEEECCCccccEEE-ccccCCccEEEEEeccccccCEEEEEEe
Confidence 457888888855 57899999999997 556778999999865432111 1112233445678888889999999987
Q ss_pred EeC
Q psy2145 261 VNA 263 (808)
Q Consensus 261 ~n~ 263 (808)
...
T Consensus 79 ~~~ 81 (99)
T d1nkra2 79 SFH 81 (99)
T ss_dssp EET
T ss_pred ecC
Confidence 653
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.88 E-value=3.4e-05 Score=61.82 Aligned_cols=82 Identities=18% Similarity=0.437 Sum_probs=53.2
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc---eEEEecCceEEEEEccCCCCCcEEEE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR---FTETNNFGFVALDIMQCLPEDSGVYT 257 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~ 257 (808)
..+|.+.+-+.. .+..|+.++|.|.+.+.-.+...|+|++||+++..+.. .....++.+.......+..++...|+
T Consensus 3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~yt 81 (99)
T d1uvqa1 3 NEVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYD 81 (99)
T ss_dssp CCCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEE
T ss_pred CcCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEE
Confidence 457777664432 24568889999999876666789999999999865321 12222333333333334455666899
Q ss_pred EEEEeC
Q psy2145 258 CRAVNA 263 (808)
Q Consensus 258 C~a~n~ 263 (808)
|++.+.
T Consensus 82 C~V~H~ 87 (99)
T d1uvqa1 82 CKVEHW 87 (99)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999885
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.86 E-value=3.3e-05 Score=64.79 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=51.4
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc-----------------CCCceEEEe--cCceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK-----------------SGSRFTETN--NFGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~-----------------~~~~~~~~~--~~~~~~L~I~~ 247 (808)
++..+...+|++|+|.|.+.+.......+.|||. |+.+. ...|+.+.. ....+.|.|.+
T Consensus 7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~ 86 (123)
T d1hxmb1 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN 86 (123)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccc
Confidence 3345778899999999999643334456899982 22110 123565543 33567899999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++++|+|.|.|.+..
T Consensus 87 l~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 87 VEKQDIATYYCALWE 101 (123)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cccccCcEEEEeeeC
Confidence 999999999998754
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.86 E-value=1.7e-05 Score=65.89 Aligned_cols=72 Identities=15% Similarity=0.309 Sum_probs=50.4
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee---------------ccCcEEEEe-eCCeEEEEEcccC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT---------------IGHRFRPIH-DFGYVALDIIDTI 116 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~---------------~~~r~~~~~-~~~~~~L~I~~~~ 116 (808)
.|..+ .+.+|++|+|.|.... ....+.||| .|+.+. ...++.... +...++|.|.++.
T Consensus 5 ~P~~~-~~~~G~svtl~C~~~~---~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (113)
T d2ntsp1 5 TPRYL-IKTRGQQVTLSCSPIS---GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE 80 (113)
T ss_dssp ECSEE-EEETTCCEEEEEECST---TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred CCCeE-EECCCCCEEEEEEECC---CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence 36666 8999999999998653 335789998 332211 012333322 3445789999999
Q ss_pred cCCCeeEEEEEEec
Q psy2145 117 PEDSGTYTCRAVNL 130 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~ 130 (808)
.+|+|.|.|.+...
T Consensus 81 ~~Dsa~YyCA~~~~ 94 (113)
T d2ntsp1 81 LGDSALYLCASSLA 94 (113)
T ss_dssp GGGCEEEEEEEESS
T ss_pred cccceeeeeeeeCC
Confidence 99999999988743
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.86 E-value=2.6e-05 Score=62.73 Aligned_cols=82 Identities=13% Similarity=0.348 Sum_probs=49.9
Q ss_pred CCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEE-e-eCcEEEEEECCCCCCCCEEEEE
Q psy2145 502 QRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTK-H-DFGYVAMDLSHVRAEDEGIYIC 579 (808)
Q Consensus 502 ~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~-~-~~~~~~L~I~~v~~~D~G~Y~C 579 (808)
.+|.....+.. ....|+.++|.|.+.+.-.+...|+|++||+.+......... . ++.+.......+..++.+.|+|
T Consensus 3 ~~P~V~v~~~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC 80 (99)
T d1lk2b_ 3 KTPQIQVYSRH--PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC 80 (99)
T ss_dssp BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence 35555443222 245688899999995332245689999999988754322222 2 2223233333345567778999
Q ss_pred EEEeCC
Q psy2145 580 KATNAL 585 (808)
Q Consensus 580 ~a~N~~ 585 (808)
.+.+..
T Consensus 81 ~V~H~s 86 (99)
T d1lk2b_ 81 RVKHDS 86 (99)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 999863
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.86 E-value=8.4e-07 Score=71.30 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=49.9
Q ss_pred CccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------------ccCcEEEEee--CCeEEEEEcccCcCCCe
Q psy2145 58 SIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------------IGHRFRPIHD--FGYVALDIIDTIPEDSG 121 (808)
Q Consensus 58 ~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------------~~~r~~~~~~--~~~~~L~I~~~~~~D~G 121 (808)
++ .|.||++|+|.|.... ....+.||| .|+.+. ...|+....+ ...++|.|.+++.+|+|
T Consensus 2 sl-sV~eG~~vtL~C~~~~---~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa 77 (96)
T d1ymmd1 2 AL-SIQEGENATMNCSYKT---SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTA 77 (96)
T ss_dssp CC-CCSSCCCCCBCCBCSS---CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCS
T ss_pred Cc-eECCCCCEEEEEEEeC---CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCE
Confidence 34 7899999999998762 345799998 232211 1234443322 34468999999999999
Q ss_pred eEEEEEEecCc
Q psy2145 122 TYTCRAVNLVG 132 (808)
Q Consensus 122 ~Y~C~a~n~~g 132 (808)
.|.|.+....|
T Consensus 78 ~YyCA~~~~~g 88 (96)
T d1ymmd1 78 SYFCATDTTSG 88 (96)
T ss_dssp CCEEEEEETTS
T ss_pred EEeEeEecCCC
Confidence 99999876544
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=1.7e-05 Score=62.74 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=49.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
..|.. .|..|++|+|.|... .+...+.|+|+|..-.. ..........+.|.+++.+|+|.|+|...
T Consensus 9 a~P~~--~V~~G~~VTL~C~~~---~~~~~f~L~Keg~~~~~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 9 VHPGP--EVISGEKVTFYCRLD---TATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp EESCS--EEETTCEEEEEEECS---SSCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred EeCCC--cccCCCcEEEEECCC---CCCCEEEEEECCCccce----eecCCCceeEEEecccChhcCceEEEEeE
Confidence 34554 588999999999975 45678999998853221 11222355689999999999999999754
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2e-05 Score=62.40 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=46.2
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccC----cEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGH----RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~----r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
.++.++|.|.+.++-.+...|+|++||+.+..+. ......++.........+...|.+.|+|++.+.
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~ 84 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP 84 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence 4677899999998645667999999999986432 122222333333444455566778899999986
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.6e-05 Score=66.53 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=51.5
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCC-CceEEEEe--CCEE---ee----cc-------Cc-EEEEeeCCeEEEEEcc
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDS-NLKVEWFK--NGRP---VT----IG-------HR-FRPIHDFGYVALDIID 114 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p-~~~v~W~~--~g~~---l~----~~-------~r-~~~~~~~~~~~L~I~~ 114 (808)
+.+|..+ .+.+|++|+|.|.....+.+ ...+.||| .|+. +. .+ .+ .....+...+.|.|.+
T Consensus 3 vtQP~~~-~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 81 (118)
T d1i8lc_ 3 VAQPAVV-LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQG 81 (118)
T ss_dssp EECCSEE-ECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECS
T ss_pred EeCCCEE-EEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeec
Confidence 4567777 89999999999998742222 23588998 2321 11 01 11 1122345567999999
Q ss_pred cCcCCCeeEEEEEEe
Q psy2145 115 TIPEDSGTYTCRAVN 129 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n 129 (808)
++.+|+|.|.|.+..
T Consensus 82 l~~~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 82 LRAMDTGLYICKVEL 96 (118)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cccCCCEEEEEeEec
Confidence 999999999998865
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.84 E-value=2.8e-05 Score=64.46 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc---------------CCCceEEE-ecCceEEEEEccCC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK---------------SGSRFTET-NNFGFVALDIMQCL 249 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~---------------~~~~~~~~-~~~~~~~L~I~~~~ 249 (808)
..|..+.+.+|++|+|.|... + ....+.||| .|+.+. ...++... ......+|.|.+++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~--~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (113)
T d2ntsp1 4 QTPRYLIKTRGQQVTLSCSPI--S-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE 80 (113)
T ss_dssp EECSEEEEETTCCEEEEEECS--T-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred eCCCeEEECCCCCEEEEEEEC--C-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence 356677889999999999863 3 345789999 232211 11223222 23345689999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
++|+|.|.|.+..
T Consensus 81 ~~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 81 LGDSALYLCASSL 93 (113)
T ss_dssp GGGCEEEEEEEES
T ss_pred cccceeeeeeeeC
Confidence 9999999998865
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.84 E-value=2.1e-05 Score=65.08 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=49.6
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc----------------cCCCceEEEe-cCceEEEEEccC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI----------------KSGSRFTETN-NFGFVALDIMQC 248 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l----------------~~~~~~~~~~-~~~~~~L~I~~~ 248 (808)
..|..+.+.+|++|+|.|... .....+.|||. |+.+ ....++.... ....++|.|.++
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~---~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (112)
T d1kgce1 4 QSPRYKVAKRGQDVALRCDPI---SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT 80 (112)
T ss_dssp EECSEEEEETTCCEEEEEECC---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred ECCCeEEECCCCCEEEEEEEC---CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence 456677889999999999862 33457999982 2211 0122333332 234468999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
+++|+|.|.|.+..
T Consensus 81 ~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 81 QQEDSAVYLCASSL 94 (112)
T ss_dssp CGGGCEEEEEEEES
T ss_pred CcCCCEEEEEeeeC
Confidence 99999999998753
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.84 E-value=6.6e-05 Score=60.65 Aligned_cols=70 Identities=14% Similarity=0.301 Sum_probs=52.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------e----------ccCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------T----------IGHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~----------~~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ . ...|+.+..|. ..+.|.|.+++.+|+
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt 90 (116)
T d7fabh1 11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT 90 (116)
T ss_dssp EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence 6789999999999997545556788997 23211 1 12577777653 567899999999999
Q ss_pred eeEEEEEEec
Q psy2145 121 GTYTCRAVNL 130 (808)
Q Consensus 121 G~Y~C~a~n~ 130 (808)
+.|.|.....
T Consensus 91 AvYyCAr~~~ 100 (116)
T d7fabh1 91 AVYYCARNLI 100 (116)
T ss_dssp EEEEEEEECS
T ss_pred eEEEeeeecC
Confidence 9999976543
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=3.1e-05 Score=61.99 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=52.5
Q ss_pred cCCCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE--EEEEeCCEEEEEEccCCCCCcEEEE
Q psy2145 633 YEKPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRF--HVQHDFGYVTLDITKCVPADSGVYM 710 (808)
Q Consensus 633 ~~~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~ 710 (808)
|.||.+...+.. .|..|++|+|.|+. ......+.++|+|......... .....+..+.+.|.+|...|+|.|+
T Consensus 2 ~pkPsLsa~P~~--~v~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~ 76 (98)
T d1ugna2 2 YIKPTLSAQPSP--VVNSGGNVTLQCDS---QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYR 76 (98)
T ss_dssp SCCCEEEEESCS--EEETTCCEEEEEEC---SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEE
T ss_pred CCCCEEEeeCCC--ccCCCCcEEEEeCC---CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEE
Confidence 457888877653 58899999999986 4567789999998754321110 0111234568999999999999999
Q ss_pred EEEEeC
Q psy2145 711 CKAINR 716 (808)
Q Consensus 711 C~A~N~ 716 (808)
|.-.-.
T Consensus 77 C~y~~~ 82 (98)
T d1ugna2 77 CYAYDS 82 (98)
T ss_dssp EEEECT
T ss_pred EeeEcC
Confidence 986543
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.83 E-value=2.7e-05 Score=62.40 Aligned_cols=69 Identities=22% Similarity=0.503 Sum_probs=46.7
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc---EEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
..|+..+|.|.+.++-.+...|+|++||..+..+.. .....|+.+..+....+..++.+.|+|++.+..
T Consensus 16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s 87 (98)
T d1d5mb1 16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS 87 (98)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence 346778999999986556679999999998865421 122234444555556677788889999999864
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.83 E-value=1.6e-05 Score=65.84 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=49.6
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCE---Eee-------------ccCcEEEEee-CCeEEEEEccc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGR---PVT-------------IGHRFRPIHD-FGYVALDIIDT 115 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~---~l~-------------~~~r~~~~~~-~~~~~L~I~~~ 115 (808)
.|..+ .+.+|++++|.|... .....+.||| .|+ .|. ...|+..... ...++|.|.++
T Consensus 5 ~P~~~-~~~~G~svtl~C~~~---~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (112)
T d1kgce1 5 SPRYK-VAKRGQDVALRCDPI---SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT 80 (112)
T ss_dssp ECSEE-EEETTCCEEEEEECC---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred CCCeE-EECCCCCEEEEEEEC---CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence 36666 789999999999865 2345799998 222 111 1234443322 34578999999
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
+++|+|.|.|.+..
T Consensus 81 ~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 81 QQEDSAVYLCASSL 94 (112)
T ss_dssp CGGGCEEEEEEEES
T ss_pred CcCCCEEEEEeeeC
Confidence 99999999998763
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=3.2e-05 Score=61.54 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCCCeEEEeeCcEEEEEECCCCCCCCEEEEEEEE
Q psy2145 503 RPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSSRITTKHDFGYVAMDLSHVRAEDEGIYICKAT 582 (808)
Q Consensus 503 ~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 582 (808)
+|.+...+.. .|..|++|+|.|.. .......+.|+|+|..... ... .....+.+.|.+++.+|+|.|+|...
T Consensus 5 kP~Lsa~P~~--~V~~G~~VTL~C~~--~~~~~~~f~L~k~g~~~~~--~~~--~~~~~a~F~l~~v~~~~~G~Y~C~y~ 76 (96)
T d1ucta2 5 KPFLSADRGL--VLMPGENISLTCSS--AHIPFDRFSLAKEGELSLP--QHQ--SGEHPANFSLGPVDLNVSGIYRCYGW 76 (96)
T ss_dssp CCEEEESSCS--EECTTCCCEEEEEC--SSSCCSEEEEEETTCSSCC--SEE--ECSSSEEEECCSCCGGGCEEEEEEEE
T ss_pred CCEEEEeCCC--ccCCCCeEEEEEeC--CCCCceEEEEEECCcccce--EEc--CCCcccEEEEeccccccCcEEEEEEE
Confidence 5677666655 48999999999985 3345567999999964322 111 12234579999999999999999876
Q ss_pred eC
Q psy2145 583 NA 584 (808)
Q Consensus 583 N~ 584 (808)
..
T Consensus 77 ~~ 78 (96)
T d1ucta2 77 YN 78 (96)
T ss_dssp CT
T ss_pred cC
Confidence 54
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.82 E-value=5.6e-05 Score=61.49 Aligned_cols=69 Identities=17% Similarity=0.367 Sum_probs=51.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|++++|.|.+.++.-....+.|+|. |+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt 89 (119)
T d1kxvc_ 10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT 89 (119)
T ss_dssp EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence 57899999999999975445567889982 2211 11 2578877663 557899999999999
Q ss_pred eeEEEEEEe
Q psy2145 121 GTYTCRAVN 129 (808)
Q Consensus 121 G~Y~C~a~n 129 (808)
+.|.|....
T Consensus 90 A~YYCAr~~ 98 (119)
T d1kxvc_ 90 AMYYCKPSL 98 (119)
T ss_dssp EEEEEEEEE
T ss_pred ceEeeeecc
Confidence 999997654
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1e-05 Score=67.26 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=48.7
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---cc------------CCCceEEEe--cCceEEEEEccCCCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---IK------------SGSRFTETN--NFGFVALDIMQCLPED 252 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l~------------~~~~~~~~~--~~~~~~L~I~~~~~~D 252 (808)
...+.+|++|+|.|.+.+.......+.|||. |.. |. ...|+.+.. ..+.++|.|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 3667899999999987422223456889982 211 10 012444433 4466789999999999
Q ss_pred cEEEEEEEEe
Q psy2145 253 SGVYTCRAVN 262 (808)
Q Consensus 253 ~G~Y~C~a~n 262 (808)
+|.|.|.+..
T Consensus 88 sg~Y~Cav~~ 97 (113)
T d1smoa_ 88 SGLYQCVIYQ 97 (113)
T ss_dssp CEEEEEEECC
T ss_pred CceEEEEEEC
Confidence 9999998854
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00013 Score=57.84 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=52.2
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-cCceE----EEEEccCCCCCcEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-NFGFV----ALDIMQCLPEDSGVY 256 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~----~L~I~~~~~~D~G~Y 256 (808)
.+|.+.... ...|+.++|.|.+.+ ..|.+.|.|++||..+.......... .+|.+ .|.|. ..+...|
T Consensus 4 ~~P~V~~~~----~~s~~~~~L~C~~~g-~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~ 75 (95)
T d1dr9a2 4 PTPSISDFE----IPTSNIRRIICSTSG-GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSF 75 (95)
T ss_dssp CCCEEEEEE----CSSTTEEEEEEEEEE-ESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEE
T ss_pred CCCEEEecc----cCCCCEEEEEEEECc-ccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceE
Confidence 356654333 235788999999974 57888999999999887554333322 23322 35543 4567899
Q ss_pred EEEEEeCceeEE
Q psy2145 257 TCRAVNALGQAV 268 (808)
Q Consensus 257 ~C~a~n~~g~~~ 268 (808)
+|.+.+..-...
T Consensus 76 tC~V~h~~l~~~ 87 (95)
T d1dr9a2 76 MCLIKYGHLRVN 87 (95)
T ss_dssp EEEEEETTCCEE
T ss_pred EEEEEecCCCCc
Confidence 999998654433
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.79 E-value=4.7e-05 Score=60.71 Aligned_cols=71 Identities=23% Similarity=0.412 Sum_probs=49.1
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc---EEEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
+..++.++|.|.+.++-.+...|+|++||+.+..+.. .....|+.+.......+..++...|+|.+.+...
T Consensus 14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl 87 (98)
T d1hdmb1 14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGA 87 (98)
T ss_dssp CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCC
Confidence 4567899999999986566789999999998865432 2222334433333334456667789999998744
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.79 E-value=7.4e-05 Score=61.26 Aligned_cols=75 Identities=17% Similarity=0.398 Sum_probs=52.0
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCC--CCCceEEEEeC--CEEe---e-------------ccCcEEEEeeC--CeEEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVT--DSNLKVEWFKN--GRPV---T-------------IGHRFRPIHDF--GYVALD 111 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~--~p~~~v~W~~~--g~~l---~-------------~~~r~~~~~~~--~~~~L~ 111 (808)
.++... .+++|++|+|.|.+.++. .....+.|||. |+.+ . ...|+.+..|. ..+.|.
T Consensus 5 ~qsg~~-~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~ 83 (120)
T d2agjh1 5 KESGPT-LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLT 83 (120)
T ss_dssp ECCCCS-BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEE
T ss_pred EeECCe-eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeee
Confidence 334334 689999999999998632 23356889982 3211 1 02477776543 457899
Q ss_pred EcccCcCCCeeEEEEEEe
Q psy2145 112 IIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a~n 129 (808)
|.+++.+|++.|.|....
T Consensus 84 i~~l~~eDsAvYyCAr~~ 101 (120)
T d2agjh1 84 LTNLDPVDTATYYCARTS 101 (120)
T ss_dssp EESCCGGGCEEEEEEEEC
T ss_pred EEeeeeccceEEeeEecC
Confidence 999999999999996543
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.79 E-value=1.4e-05 Score=66.57 Aligned_cols=72 Identities=14% Similarity=0.316 Sum_probs=49.0
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe---e---c---------cCcEEEE-eeCCeEEEEEcccC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV---T---I---------GHRFRPI-HDFGYVALDIIDTI 116 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l---~---~---------~~r~~~~-~~~~~~~L~I~~~~ 116 (808)
.|..+ .+.+|++|+|.|... .....+.||| .|+.+ . . ..++... .....++|.|.++.
T Consensus 5 sP~~~-~~~~G~svtl~C~~s---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (114)
T d1ogae1 5 SPKYL-FRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 80 (114)
T ss_dssp SCSEE-EEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred cCCeE-EEcCCCCEEEEEEEe---cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence 46667 899999999999976 2345799998 22211 1 0 1122222 22344689999999
Q ss_pred cCCCeeEEEEEEec
Q psy2145 117 PEDSGTYTCRAVNL 130 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~ 130 (808)
.+|+|.|.|.+...
T Consensus 81 ~~DSa~YyCa~~~~ 94 (114)
T d1ogae1 81 KNPTAFYLCASSSR 94 (114)
T ss_dssp SCCCEEEEEEEESS
T ss_pred cCCceeEEEeeccC
Confidence 99999999977643
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=5e-05 Score=60.71 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
..|.+...|..+ |..|++|+|.|.. ......+.++|+|......... .....+....+.|.+++..|+|.|+|.
T Consensus 3 pkPsLsa~P~~~-v~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~ 78 (98)
T d1ugna2 3 IKPTLSAQPSPV-VNSGGNVTLQCDS---QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY 78 (98)
T ss_dssp CCCEEEEESCSE-EETTCCEEEEEEC---SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEE
T ss_pred CCCEEEeeCCCc-cCCCCcEEEEeCC---CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEe
Confidence 467888888554 8899999999996 4566789999988754322111 111122345799999999999999998
Q ss_pred EEe
Q psy2145 260 AVN 262 (808)
Q Consensus 260 a~n 262 (808)
...
T Consensus 79 y~~ 81 (98)
T d1ugna2 79 AYD 81 (98)
T ss_dssp EEC
T ss_pred eEc
Confidence 754
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.78 E-value=2e-05 Score=65.55 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=48.1
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------C---------CCceEEE-ecCceEEEEEccCC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------S---------GSRFTET-NNFGFVALDIMQCL 249 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------~---------~~~~~~~-~~~~~~~L~I~~~~ 249 (808)
..|..+.+.+|++|+|.|... .....+.||| .|+.+. . ..++... .....++|.|.++.
T Consensus 4 QsP~~~~~~~G~svtl~C~~s---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (114)
T d1ogae1 4 QSPKYLFRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 80 (114)
T ss_dssp CSCSEEEEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred EcCCeEEEcCCCCEEEEEEEe---cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence 345667899999999999983 3345799998 222110 1 1111111 12334579999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|+|.|.|.+..
T Consensus 81 ~~DSa~YyCa~~~ 93 (114)
T d1ogae1 81 KNPTAFYLCASSS 93 (114)
T ss_dssp SCCCEEEEEEEES
T ss_pred cCCceeEEEeecc
Confidence 9999999998764
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.78 E-value=5.7e-05 Score=61.01 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=51.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-----------ccCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-----------IGHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-----------~~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++|+|+|.+.++.-....+.|+| .|+. |. ...|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD 90 (117)
T d1iqdb1 11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD 90 (117)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence 6789999999999997544455788988 2222 11 12477777654 55689999999999
Q ss_pred CeeEEEEEEec
Q psy2145 120 SGTYTCRAVNL 130 (808)
Q Consensus 120 ~G~Y~C~a~n~ 130 (808)
++.|.|.....
T Consensus 91 tAvYYCA~~~~ 101 (117)
T d1iqdb1 91 TAVYYCAVPDP 101 (117)
T ss_dssp CEEEEEEECSS
T ss_pred ceEEEEeEcCC
Confidence 99999987543
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.77 E-value=4.3e-05 Score=60.73 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEe-cCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETN-NFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.|.+...|. ..|..|++|+|.|.. ......+.++|+|..-.......... ......+.|.+++..|+|.|+|...
T Consensus 2 KPsLsa~P~-~~V~~G~~VTl~C~~---~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~ 77 (96)
T d1nkra1 2 KPSLLAHPG-PLVKSEETVILQCWS---DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 77 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEEE---SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEeeCC-CccCCCCcEEEEECC---CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence 466766774 457899999999997 55677899999875422111111111 1223579999999999999999876
Q ss_pred eC
Q psy2145 262 NA 263 (808)
Q Consensus 262 n~ 263 (808)
..
T Consensus 78 ~~ 79 (96)
T d1nkra1 78 VT 79 (96)
T ss_dssp BT
T ss_pred cC
Confidence 43
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=4.4e-05 Score=61.77 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=54.5
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCc--eEEEecCce----EEEEEccCCCCCcE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSR--FTETNNFGF----VALDIMQCLPEDSG 254 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~----~~L~I~~~~~~D~G 254 (808)
..+|.+.+.+.......+..++|.|.+.+.......|.|++||.++..+.. ......+|. ..|.|..-......
T Consensus 3 ~~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~ 82 (102)
T d1q0xl2 3 KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS 82 (102)
T ss_dssp CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred CCCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCC
Confidence 346766655443333346789999999875545689999999998764321 112222332 24666655555677
Q ss_pred EEEEEEEeCce
Q psy2145 255 VYTCRAVNALG 265 (808)
Q Consensus 255 ~Y~C~a~n~~g 265 (808)
.|+|+|.+...
T Consensus 83 ~ytC~V~H~~~ 93 (102)
T d1q0xl2 83 SYSCQVTHEGH 93 (102)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEEECCc
Confidence 99999998654
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.76 E-value=4.8e-05 Score=60.89 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=49.1
Q ss_pred cCCCeeeecCCCcccccCCCceEEEEEEeeCCCCCcEEEEEECCEecCCCC---CeEEEeeCcEE---EEEECCCCCCCC
Q psy2145 501 KQRPVFTKPLQNIDAVEEGKNAHFSCRLIPVGDPTLKVEWFRNEKPLEDSS---RITTKHDFGYV---AMDLSHVRAEDE 574 (808)
Q Consensus 501 ~~~P~f~~~~~~~~~v~~G~~v~l~C~v~~~g~P~~~v~W~k~g~~l~~~~---~~~~~~~~~~~---~L~I~~v~~~D~ 574 (808)
..+|.....+.. .+..|+..+|.|.+.+.-.+...|+|++||+++..+. ......++.+. .|.+. .++.
T Consensus 3 ~~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~ 77 (99)
T d1uvqa1 3 NEVPEVTVFSKS--PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSAD 77 (99)
T ss_dssp CCCCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTT
T ss_pred CcCCEEEEEcCC--cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCC
Confidence 346655543332 2456888999999953333457899999999886531 11122233332 35554 4455
Q ss_pred EEEEEEEEeCC
Q psy2145 575 GIYICKATNAL 585 (808)
Q Consensus 575 G~Y~C~a~N~~ 585 (808)
..|+|.+.+..
T Consensus 78 ~~ytC~V~H~s 88 (99)
T d1uvqa1 78 EIYDCKVEHWG 88 (99)
T ss_dssp CCEEEEEECTT
T ss_pred CEEEEEEEeCC
Confidence 68999999863
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.75 E-value=3.2e-05 Score=63.93 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=48.4
Q ss_pred EeecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEcc------C---------CCceEE-EecCceEEEEEccC
Q psy2145 187 TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPIK------S---------GSRFTE-TNNFGFVALDIMQC 248 (808)
Q Consensus 187 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l~------~---------~~~~~~-~~~~~~~~L~I~~~ 248 (808)
+..|....+.+|++|+|.|... .....+.||| .|+.+. . ..++.. ........|.|.++
T Consensus 3 tQ~P~~~~~~~G~svtl~C~~s---~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 79 (112)
T d2bnub1 3 TQTPKFQVLKTGQSMTLQCAQD---MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSA 79 (112)
T ss_dssp EEECSEEEEETTCCEEEEEEES---SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSC
T ss_pred EECCCeEEECCCCCEEEEEEEE---CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCC
Confidence 3456677899999999999973 2345799998 222110 0 111111 12223347999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
.++|+|.|.|.+..
T Consensus 80 ~~~DsavYyCA~~~ 93 (112)
T d2bnub1 80 APSQTSVYFCASSY 93 (112)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred CHHHCEEEEEeecC
Confidence 99999999998753
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=6.2e-05 Score=59.75 Aligned_cols=79 Identities=15% Similarity=0.311 Sum_probs=52.6
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEE-e-cCceEEEEEccCCCCCcEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET-N-NFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~-~-~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
.||.+.+... ...|+.++|.|.+.+.-.+...|+|++||..+......... . ++.+.......+...|...|+|+
T Consensus 2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~ 78 (94)
T d1t7va1 2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH 78 (94)
T ss_dssp BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence 3666665332 23578999999998755557899999999988654333322 2 22333444445556666789999
Q ss_pred EEeC
Q psy2145 260 AVNA 263 (808)
Q Consensus 260 a~n~ 263 (808)
+.+.
T Consensus 79 V~H~ 82 (94)
T d1t7va1 79 VQHS 82 (94)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9885
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.74 E-value=7.4e-05 Score=61.00 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=53.3
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEee--CCeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHD--FGYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~--~~~~~L~I~ 113 (808)
++... .+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..| ...+.|.|.
T Consensus 6 qsg~~-~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~ 84 (120)
T d1pg7x1 6 QSGPE-LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV 84 (120)
T ss_dssp ECCCE-EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eECCc-EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence 34444 6889999999999986433455788998 33321 11 247777665 356789999
Q ss_pred ccCcCCCeeEEEEEEe
Q psy2145 114 DTIPEDSGTYTCRAVN 129 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a~n 129 (808)
+++.+|++.|.|....
T Consensus 85 ~l~~eDtA~YYCAr~~ 100 (120)
T d1pg7x1 85 RLTSNDSAVYYCARED 100 (120)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccCCCcceEEEeeecC
Confidence 9999999999998653
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.74 E-value=5.8e-05 Score=61.09 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=53.1
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEee--CCeEEEE
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHD--FGYVALD 111 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~--~~~~~L~ 111 (808)
+.++... .+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..| ...+.|.
T Consensus 4 L~qsg~~-~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~ 82 (117)
T d1mfah1 4 VQQSGTV-VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYME 82 (117)
T ss_dssp EEECCCE-EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred EEeECCc-eECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEee
Confidence 3445555 6899999999999997544455788987 33222 11 136777665 3557899
Q ss_pred EcccCcCCCeeEEEEE
Q psy2145 112 IIDTIPEDSGTYTCRA 127 (808)
Q Consensus 112 I~~~~~~D~G~Y~C~a 127 (808)
|.+++.+|++.|.|..
T Consensus 83 i~~L~~eDtAvYYCAr 98 (117)
T d1mfah1 83 LSSLTSEDSAVYYCTR 98 (117)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ecccCCCcceEEEEec
Confidence 9999999999999964
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.74 E-value=6.3e-05 Score=60.88 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=51.2
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..| ...+.|.|.+++.+|
T Consensus 10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eD 89 (117)
T d1um5h1 10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSED 89 (117)
T ss_dssp EECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCc
Confidence 6899999999999997544556889998 2322 211 257777665 355789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 90 tAvYYCAr~ 98 (117)
T d1um5h1 90 SAVYYCARS 98 (117)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999653
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.73 E-value=5.3e-05 Score=61.34 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=49.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------e-c----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------T-I----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ . . ..|+.+..| .....|.|.+++.+|
T Consensus 11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD 90 (115)
T d1f3dh1 11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED 90 (115)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence 5789999999999996443455788987 23222 1 1 247777665 345689999999999
Q ss_pred CeeEEEEE
Q psy2145 120 SGTYTCRA 127 (808)
Q Consensus 120 ~G~Y~C~a 127 (808)
++.|.|..
T Consensus 91 tAvYYCAr 98 (115)
T d1f3dh1 91 SAVYYCAN 98 (115)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEec
Confidence 99999954
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.73 E-value=3.1e-05 Score=64.12 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=50.9
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc---------------CCCceEEE-ecCceEEEEEcc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK---------------SGSRFTET-NNFGFVALDIMQ 247 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~---------------~~~~~~~~-~~~~~~~L~I~~ 247 (808)
++..|..+.+.+|++|+|.|... . ....+.|||. |+.+. ...++... .......|.|.+
T Consensus 4 VtQ~P~~~~~~~G~~v~l~C~~~--~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 80 (113)
T d1nfdb1 4 VVQSPRHIIKEKGGRSVLTCIPI--S-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 80 (113)
T ss_dssp CEEECSEEEEETTCCCEEEEECC--T-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred EEEcCCEEEEeCCCCEEEEEEeC--C-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence 44567778899999999999863 2 3457999983 22110 11233222 223346899999
Q ss_pred CCCCCcEEEEEEEEeC
Q psy2145 248 CLPEDSGVYTCRAVNA 263 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n~ 263 (808)
++.+|+|.|.|.+...
T Consensus 81 ~~~~Dsa~YyCa~~~~ 96 (113)
T d1nfdb1 81 LELEDSAMYFCASSLR 96 (113)
T ss_dssp CCGGGCEEECEEEESS
T ss_pred cCcCCceeEEEEeecC
Confidence 9999999999987653
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=0.0001 Score=61.31 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=48.8
Q ss_pred cCceeecCCCeEEEEEEEeecCC-CCeEEEEee--CCEEcc---------------CCCceEEEecCceEEEEEccCCCC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSD-NTMKVEWFH--NNVPIK---------------SGSRFTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~~--~g~~l~---------------~~~~~~~~~~~~~~~L~I~~~~~~ 251 (808)
|..+.+.+|++|+|.|....... ....+.||| .|+.+. .............+.|.|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 55677889999999999852122 234588998 232110 111112333455678999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999998864
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.71 E-value=6.1e-05 Score=60.68 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=50.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt 90 (117)
T d1c5db1 11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT 90 (117)
T ss_dssp EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence 6799999999999997544455788997 23222 11 2578877764 457899999999999
Q ss_pred eeEEEEE
Q psy2145 121 GTYTCRA 127 (808)
Q Consensus 121 G~Y~C~a 127 (808)
+.|.|..
T Consensus 91 AvYYCAr 97 (117)
T d1c5db1 91 AIYFCTR 97 (117)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 9999964
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.71 E-value=2.7e-05 Score=64.41 Aligned_cols=71 Identities=14% Similarity=0.338 Sum_probs=48.1
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------c---------cCcEEEE-eeCCeEEEEEcccC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------I---------GHRFRPI-HDFGYVALDIIDTI 116 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------~---------~~r~~~~-~~~~~~~L~I~~~~ 116 (808)
.|..+ .+.+|++++|.|.... ....+.||| .|+.+. . ..++... .......|.|.++.
T Consensus 5 ~P~~~-~~~~G~svtl~C~~s~---~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (112)
T d2bnub1 5 TPKFQ-VLKTGQSMTLQCAQDM---NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA 80 (112)
T ss_dssp ECSEE-EEETTCCEEEEEEESS---CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred CCCeE-EECCCCCEEEEEEEEC---CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence 36666 7899999999998763 345799998 332211 0 0122222 22334579999999
Q ss_pred cCCCeeEEEEEEe
Q psy2145 117 PEDSGTYTCRAVN 129 (808)
Q Consensus 117 ~~D~G~Y~C~a~n 129 (808)
++|+|.|.|.+..
T Consensus 81 ~~DsavYyCA~~~ 93 (112)
T d2bnub1 81 PSQTSVYFCASSY 93 (112)
T ss_dssp GGGCEEEEEEEEC
T ss_pred HHHCEEEEEeecC
Confidence 9999999998764
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.71 E-value=4.1e-05 Score=60.26 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=49.8
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceE-EEEEccCCCCCcEEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFV-ALDIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a 260 (808)
.||.+.+.... ..+..++|.|.+.+.-.....|+|++||..+..+........+|.+ ......+..++...|+|++
T Consensus 2 ~PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V 78 (91)
T d3frua1 2 EPPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQV 78 (91)
T ss_dssp BCCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEE
T ss_pred CCCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEE
Confidence 36666553221 2456899999998766667899999999988654333233333322 2222233345667899999
Q ss_pred EeC
Q psy2145 261 VNA 263 (808)
Q Consensus 261 ~n~ 263 (808)
.+.
T Consensus 79 ~H~ 81 (91)
T d3frua1 79 EHE 81 (91)
T ss_dssp ECT
T ss_pred EeC
Confidence 885
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.71 E-value=2.2e-05 Score=65.01 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=50.4
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEE---ee------------ccCcEEEEee-CCeEEEEEccc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRP---VT------------IGHRFRPIHD-FGYVALDIIDT 115 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~---l~------------~~~r~~~~~~-~~~~~L~I~~~ 115 (808)
..|..+ .+.+|++|+|.|.... ....+.|||. |+. |. ...|+..... ...+.|.|.++
T Consensus 6 Q~P~~~-~~~~G~~v~l~C~~~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (113)
T d1nfdb1 6 QSPRHI-IKEKGGRSVLTCIPIS---GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL 81 (113)
T ss_dssp EECSEE-EEETTCCCEEEEECCT---TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred EcCCEE-EEeCCCCEEEEEEeCC---CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence 457777 8999999999998652 3347999982 211 11 0124433322 34568999999
Q ss_pred CcCCCeeEEEEEEec
Q psy2145 116 IPEDSGTYTCRAVNL 130 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n~ 130 (808)
..+|+|.|.|.+...
T Consensus 82 ~~~Dsa~YyCa~~~~ 96 (113)
T d1nfdb1 82 ELEDSAMYFCASSLR 96 (113)
T ss_dssp CGGGCEEECEEEESS
T ss_pred CcCCceeEEEEeecC
Confidence 999999999987643
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.70 E-value=6.2e-05 Score=60.42 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=53.5
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEeeC--CeEEEEE
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHDF--GYVALDI 112 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~~--~~~~L~I 112 (808)
.++... .+++|+++.|.|.+.++.-....+.|+| .|+. |. . ..|+.+..|. ..+.|.|
T Consensus 5 ~esg~~-~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~ 83 (116)
T d1mjuh1 5 QQPGAE-LVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL 83 (116)
T ss_dssp ECCSEE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred eeECCc-EECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecc
Confidence 344444 7899999999999997544556788987 2322 11 1 1477777664 5578999
Q ss_pred cccCcCCCeeEEEEE
Q psy2145 113 IDTIPEDSGTYTCRA 127 (808)
Q Consensus 113 ~~~~~~D~G~Y~C~a 127 (808)
.+++.+|++.|.|..
T Consensus 84 ~sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 84 SSLTSDDSAVYYCAN 98 (116)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred cccCCCCceEEEEcc
Confidence 999999999999964
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.70 E-value=6.7e-05 Score=61.00 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=50.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt 90 (120)
T d1dn0b1 11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT 90 (120)
T ss_dssp EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence 5789999999999997544556788998 23221 11 2578887653 457899999999999
Q ss_pred eeEEEE
Q psy2145 121 GTYTCR 126 (808)
Q Consensus 121 G~Y~C~ 126 (808)
+.|.|.
T Consensus 91 A~YYCA 96 (120)
T d1dn0b1 91 AVYYCA 96 (120)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999994
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.70 E-value=4.7e-05 Score=62.15 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=50.7
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE----cc---C--------CCceEEEec--CceEEEEEccCCCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP----IK---S--------GSRFTETNN--FGFVALDIMQCLPED 252 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~----l~---~--------~~~~~~~~~--~~~~~L~I~~~~~~D 252 (808)
...+.+|++|+|.|.+.+.........|+|. |+. +. . ..|+.+..+ .+..+|+|.+++.+|
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD 83 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD 83 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence 4568899999999998533334557889983 321 11 0 124555433 466789999999999
Q ss_pred cEEEEEEEEeC
Q psy2145 253 SGVYTCRAVNA 263 (808)
Q Consensus 253 ~G~Y~C~a~n~ 263 (808)
+|.|.|...+.
T Consensus 84 sa~YyCa~~~~ 94 (110)
T d1u9ka_ 84 SGLYRCVIYHP 94 (110)
T ss_dssp CEEEEEEEECT
T ss_pred CEEEEEEEeCC
Confidence 99999998654
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.69 E-value=9e-05 Score=60.26 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=52.7
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIID 114 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~ 114 (808)
+... .+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+
T Consensus 8 sg~~-~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~ 86 (122)
T d1vgeh1 8 SGAE-VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (122)
T ss_dssp CCCE-EECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCc-EECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence 4444 6899999999999996444455788988 2221 111 2577777664 556899999
Q ss_pred cCcCCCeeEEEEEE
Q psy2145 115 TIPEDSGTYTCRAV 128 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~ 128 (808)
++.+|++.|.|...
T Consensus 87 L~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 87 LRPEDTAVYYCARD 100 (122)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEEeec
Confidence 99999999999765
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.69 E-value=1.9e-06 Score=69.09 Aligned_cols=71 Identities=20% Similarity=0.359 Sum_probs=48.5
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------------CCCceEEEe--cCceEEEEEccCCCCCcEE
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------------SGSRFTETN--NFGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~ 255 (808)
.+.|.+|++|+|.|... .....+.|||. |+.+. ...++.... .....+|.|.+++.+|+|.
T Consensus 2 slsV~eG~~vtL~C~~~---~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~ 78 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYK---TSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTAS 78 (96)
T ss_dssp CCCCSSCCCCCBCCBCS---SCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSC
T ss_pred CceECCCCCEEEEEEEe---CCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEE
Confidence 45688999999999873 34567999982 32211 112333221 2334579999999999999
Q ss_pred EEEEEEeCce
Q psy2145 256 YTCRAVNALG 265 (808)
Q Consensus 256 Y~C~a~n~~g 265 (808)
|.|.+....|
T Consensus 79 YyCA~~~~~g 88 (96)
T d1ymmd1 79 YFCATDTTSG 88 (96)
T ss_dssp CEEEEEETTS
T ss_pred EeEeEecCCC
Confidence 9999876544
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.68 E-value=7.7e-05 Score=60.16 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT 90 (116)
T d1a2yb_ 11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT 90 (116)
T ss_dssp EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence 6789999999999997544556788998 22221 11 2477777653 557899999999999
Q ss_pred eeEEEEEE
Q psy2145 121 GTYTCRAV 128 (808)
Q Consensus 121 G~Y~C~a~ 128 (808)
+.|.|...
T Consensus 91 AvYYCAr~ 98 (116)
T d1a2yb_ 91 ARYYCARE 98 (116)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 99999754
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.68 E-value=6.5e-05 Score=60.61 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=49.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eD 90 (118)
T d1nlbh1 11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCc
Confidence 6799999999999997544445688987 2321 211 2477777664 55789999999999
Q ss_pred CeeEEEE
Q psy2145 120 SGTYTCR 126 (808)
Q Consensus 120 ~G~Y~C~ 126 (808)
++.|.|.
T Consensus 91 tAvYYCA 97 (118)
T d1nlbh1 91 TATYFCA 97 (118)
T ss_dssp CEEEEEE
T ss_pred ceEEEEe
Confidence 9999994
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=3.3e-05 Score=62.86 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=54.4
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce---EEEecCc-e---EEEEEccCCCCCcE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF---TETNNFG-F---VALDIMQCLPEDSG 254 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~-~---~~L~I~~~~~~D~G 254 (808)
.+|.+.+-+.......++.++|.|.+.+.......|.|++||..+..+... .....+| + ..|.|..-......
T Consensus 3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~ 82 (105)
T d1fp5a2 3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKD 82 (105)
T ss_dssp BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGG
T ss_pred CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCC
Confidence 456654444344445677899999997654446899999999988653211 1122222 2 24777666556667
Q ss_pred EEEEEEEeCce
Q psy2145 255 VYTCRAVNALG 265 (808)
Q Consensus 255 ~Y~C~a~n~~g 265 (808)
.|+|+|.+...
T Consensus 83 ~ytC~V~H~~l 93 (105)
T d1fp5a2 83 EFICRAVHEAA 93 (105)
T ss_dssp GEEEEEECTTS
T ss_pred EEEEEEEECCC
Confidence 89999998543
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.67 E-value=0.00011 Score=59.30 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=51.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD 90 (117)
T d1jnhb1 11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED 90 (117)
T ss_dssp ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence 6789999999999997555666889998 2221 221 2478887664 55789999999999
Q ss_pred CeeEEEEE
Q psy2145 120 SGTYTCRA 127 (808)
Q Consensus 120 ~G~Y~C~a 127 (808)
++.|.|..
T Consensus 91 TAvYYCAr 98 (117)
T d1jnhb1 91 SAVYSCSR 98 (117)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEee
Confidence 99999965
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.67 E-value=6.3e-05 Score=60.59 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=51.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+. |. . ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eD 90 (117)
T d1jpth1 11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAED 90 (117)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCC
Confidence 6789999999999997544456788987 2221 11 1 2577777663 55789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 TAvYYCAr~~ 100 (117)
T d1jpth1 91 TAVYYCARDT 100 (117)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEEeecC
Confidence 9999996543
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.66 E-value=6.8e-05 Score=59.65 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-------------cCcEEEEeeC--CeEEEEEcccCc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-------------GHRFRPIHDF--GYVALDIIDTIP 117 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-------------~~r~~~~~~~--~~~~L~I~~~~~ 117 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.
T Consensus 11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~ 90 (109)
T d2ck0h1 11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKT 90 (109)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCH
Confidence 6799999999999997544556788987 2321 111 1377877763 557899999999
Q ss_pred CCCeeEEEEEE
Q psy2145 118 EDSGTYTCRAV 128 (808)
Q Consensus 118 ~D~G~Y~C~a~ 128 (808)
+|++.|.|...
T Consensus 91 eDTAvYYCAr~ 101 (109)
T d2ck0h1 91 EDTGIYYCVRG 101 (109)
T ss_dssp GGCEEEEEEEE
T ss_pred hHCEEEEEEEc
Confidence 99999999743
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.65 E-value=2.4e-05 Score=65.34 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=49.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c----c---------CCCceEEEe--cCceEEEEEccC
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I----K---------SGSRFTETN--NFGFVALDIMQC 248 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l----~---------~~~~~~~~~--~~~~~~L~I~~~ 248 (808)
++..+...+|++|+|.|.+.+.......+.|||. |+. | . ...++.... ....+.|.|.++
T Consensus 7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l 86 (120)
T d1ypzf1 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (120)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence 4446777899999999998422223456899982 221 1 0 112333333 345678999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
+.+|+|.|.|.+..
T Consensus 87 ~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 87 EEEDEAIYYCSYGE 100 (120)
T ss_dssp CGGGCSEEEEEECC
T ss_pred ccccceeEEEEEcC
Confidence 99999999997653
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.65 E-value=0.00017 Score=52.92 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=57.9
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEee-CCE---EccCCCc-eEE---EecCceEEEEEccCCCCCcEEEEEEEEeC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFH-NNV---PIKSGSR-FTE---TNNFGFVALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~-~g~---~l~~~~~-~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
...+..|+.+.|+|.+. .-...|.++|-| +|. +|..+.. ... ..+-....|.+..+-++|.|.|+|.|.-.
T Consensus 12 ~hs~~~G~~f~leCPVk-YC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVK-YCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEEECTTSCEEEEEEEE-CSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred eeeEecCCceEecCcch-hhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 35688999999999997 466788999988 443 4443322 221 12224557999999999999999999776
Q ss_pred ceeEEE-EEEEEE
Q psy2145 264 LGQAVT-SGNLLV 275 (808)
Q Consensus 264 ~g~~~~-~~~l~V 275 (808)
.|-..+ ++.+.|
T Consensus 91 s~vieSHSvti~V 103 (104)
T d1xaua_ 91 SQVINSHSVTIHV 103 (104)
T ss_dssp TEEEECCCEEEEE
T ss_pred hhheecceEEEEe
Confidence 665443 445544
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.65 E-value=2.9e-05 Score=64.27 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=49.0
Q ss_pred eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc------C---------CCceEE-EecCceEEEEEccCC
Q psy2145 188 TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK------S---------GSRFTE-TNNFGFVALDIMQCL 249 (808)
Q Consensus 188 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~------~---------~~~~~~-~~~~~~~~L~I~~~~ 249 (808)
..|..+.+.+|++|+|.|... .....+.|||. |..+. . ..++.. ..+.....|.|.+++
T Consensus 3 QsP~~~~~~~G~svtL~C~~~---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 79 (112)
T d2cdeb1 3 QTPRYLVIGTGKKITLECSQT---MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR 79 (112)
T ss_dssp EECSEEEEETTCCBCCEEEET---TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred ECCCEEEECCCCCEEEEEEEe---CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence 456677889999999999973 23457999982 22110 0 011111 112234579999999
Q ss_pred CCCcEEEEEEEEeCc
Q psy2145 250 PEDSGVYTCRAVNAL 264 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~ 264 (808)
++|+|.|.|.+....
T Consensus 80 ~~Dsa~YyCA~~~~~ 94 (112)
T d2cdeb1 80 PSHTSQYLCASSENI 94 (112)
T ss_dssp TTTCSEEEEEEECSS
T ss_pred ccccccEEEEEecCC
Confidence 999999999887543
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.64 E-value=3.6e-05 Score=61.20 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEe-CCEEEEEEccCCCCCcEEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFHVQHD-FGYVTLDITKCVPADSGVYMCKA 713 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A 713 (808)
||.+...+. ..|..|++|+|.|.. ......+.++|+|..-..-........ ...+.+.|.+|+..|+|.|+|.-
T Consensus 2 KPsLsa~P~--~~V~~G~~VTl~C~~---~~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y 76 (96)
T d1nkra1 2 KPSLLAHPG--PLVKSEETVILQCWS---DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG 76 (96)
T ss_dssp CCEEEEESC--SEEETTCCEEEEEEE---SSCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeeCC--CccCCCCcEEEEECC---CCCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEE
Confidence 577766654 368889999999987 566778999998853211000000111 12457999999999999999986
Q ss_pred EeC
Q psy2145 714 INR 716 (808)
Q Consensus 714 ~N~ 716 (808)
...
T Consensus 77 ~~~ 79 (96)
T d1nkra1 77 SVT 79 (96)
T ss_dssp EBT
T ss_pred EcC
Confidence 543
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.64 E-value=0.00011 Score=60.19 Aligned_cols=68 Identities=26% Similarity=0.458 Sum_probs=52.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD 89 (124)
T d1zvya1 10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED 89 (124)
T ss_dssp ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence 5789999999999997655666889998 2221 211 2477777664 55789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 90 tAvYYCAr~ 98 (124)
T d1zvya1 90 TAIYTCGAT 98 (124)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEeec
Confidence 999999764
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.64 E-value=8e-05 Score=60.16 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=51.6
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEee--CCeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHD--FGYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~--~~~~~L~I~ 113 (808)
++... .+++|+++.|.|.+.++.--...+.|+| .|+. |.. ..|+.+..| ...+.|.|.
T Consensus 6 esg~~-~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~ 84 (118)
T d2jelh1 6 QSGPE-LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA 84 (118)
T ss_dssp ECCCE-EECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred eECCc-eECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence 34444 6899999999999996433445788987 2321 111 247777765 355789999
Q ss_pred ccCcCCCeeEEEEE
Q psy2145 114 DTIPEDSGTYTCRA 127 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a 127 (808)
+++.+|++.|.|..
T Consensus 85 sL~~eDTAvYYCAr 98 (118)
T d2jelh1 85 RLTSEDSAIYYCAR 98 (118)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccccCcceeeeEEE
Confidence 99999999999943
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.64 E-value=0.00011 Score=59.48 Aligned_cols=70 Identities=17% Similarity=0.333 Sum_probs=51.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD 90 (118)
T d2fbjh1 11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence 5789999999999997544455688987 33211 11 2477777653 55679999999999
Q ss_pred CeeEEEEEEec
Q psy2145 120 SGTYTCRAVNL 130 (808)
Q Consensus 120 ~G~Y~C~a~n~ 130 (808)
++.|.|.....
T Consensus 91 tAvYYCAr~~~ 101 (118)
T d2fbjh1 91 TALYYCARLHY 101 (118)
T ss_dssp CEEEEEEEEET
T ss_pred ceEEEeeEecC
Confidence 99999986554
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00023 Score=51.79 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=43.0
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEE
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAV 128 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 128 (808)
..|..+.|+|.+.....+..--.|+|+|+.|..+.. .+....+.|.. .+|+|.|.|..-
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl 68 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL 68 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence 458889999999853333446789999999986532 12233577765 789999999965
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.64 E-value=9.9e-05 Score=58.79 Aligned_cols=70 Identities=21% Similarity=0.395 Sum_probs=45.2
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE---EEEeeCCeEEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF---RPIHDFGYVALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
..|+.++|.|.+.++-.+...|.|++||..+..+... ....++.+.......+..++...|+|++.+..-
T Consensus 14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl 86 (97)
T d1uvqb1 14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL 86 (97)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTC
T ss_pred cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCC
Confidence 4577889999999865557899999999887754221 122333344444445566777899999988643
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.64 E-value=8e-05 Score=59.75 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=50.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD 90 (114)
T d1indh1 11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED 90 (114)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence 6789999999999997544556788998 2221 211 1477777664 55789999999999
Q ss_pred CeeEEEEE
Q psy2145 120 SGTYTCRA 127 (808)
Q Consensus 120 ~G~Y~C~a 127 (808)
++.|.|..
T Consensus 91 tAvYYCA~ 98 (114)
T d1indh1 91 TALYFCAS 98 (114)
T ss_dssp CEEEEEEC
T ss_pred ccEEEECC
Confidence 99999963
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.63 E-value=7.6e-05 Score=61.00 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=49.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++|+|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD 90 (119)
T d1qnzh_ 11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD 90 (119)
T ss_dssp EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence 6789999999999986433445689997 33221 11 1477776543 55689999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 sAvYYCA~~ 99 (119)
T d1qnzh_ 91 SAVYYCAIH 99 (119)
T ss_dssp CEEEEEEEC
T ss_pred eeEEEEEEe
Confidence 999999643
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.62 E-value=9.9e-05 Score=58.80 Aligned_cols=81 Identities=21% Similarity=0.397 Sum_probs=48.4
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce---EEEecCceEEEEEccCCCCCcEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF---TETNNFGFVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 259 (808)
+|.+.+.+... ...|+.++|.|.+.+.-.+...|.|++||+++..+... ....++.+.......+..++...|+|+
T Consensus 2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~ 80 (97)
T d1uvqb1 2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH 80 (97)
T ss_dssp CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence 45555444332 34577889999998765557899999999987654221 122233343444445567777899999
Q ss_pred EEeCc
Q psy2145 260 AVNAL 264 (808)
Q Consensus 260 a~n~~ 264 (808)
+.+..
T Consensus 81 V~H~s 85 (97)
T d1uvqb1 81 VEHPS 85 (97)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 98853
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=6.7e-05 Score=60.66 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=53.7
Q ss_pred CCCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCc-e---EEEEEccCCCCCcE
Q psy2145 181 TQAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFG-F---VALDIMQCLPEDSG 254 (808)
Q Consensus 181 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~-~---~~L~I~~~~~~D~G 254 (808)
..+|.+.+-+.......++.++|.|.+.+.......|.|++||..+..+... .....+| + ..|.|.........
T Consensus 3 ~~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~ 82 (102)
T d1rzfl2 3 KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHR 82 (102)
T ss_dssp CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSS
T ss_pred CCCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCC
Confidence 4567776654433333467799999998655556799999999988654221 1222233 2 24555544433355
Q ss_pred EEEEEEEeCce
Q psy2145 255 VYTCRAVNALG 265 (808)
Q Consensus 255 ~Y~C~a~n~~g 265 (808)
.|+|++.+...
T Consensus 83 ~ytC~V~H~~~ 93 (102)
T d1rzfl2 83 SYSCQVTHEGS 93 (102)
T ss_dssp CEEEEEEETTE
T ss_pred EEEEEEEECCc
Confidence 79999998643
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.61 E-value=4.8e-05 Score=60.48 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=46.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.|++|++++|.|.+.++.-....+.|+|. |+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 47899999999999864334456789872 2211 11 2477777653 557899999999999
Q ss_pred eeEEEEE
Q psy2145 121 GTYTCRA 127 (808)
Q Consensus 121 G~Y~C~a 127 (808)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999964
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.61 E-value=0.00011 Score=59.89 Aligned_cols=68 Identities=16% Similarity=0.316 Sum_probs=49.9
Q ss_pred ccCCCCcEEEEEEEeeCCC--CCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcC
Q psy2145 61 NLRERGHAHFECKLEPVTD--SNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPE 118 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~--p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~ 118 (808)
.+++|++++|.|.+.++.- ....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e 90 (120)
T d1ai1h1 11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE 90 (120)
T ss_dssp EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence 5789999999999996422 334678988 23222 11 2578877664 4578999999999
Q ss_pred CCeeEEEEEE
Q psy2145 119 DSGTYTCRAV 128 (808)
Q Consensus 119 D~G~Y~C~a~ 128 (808)
|++.|.|...
T Consensus 91 DtAvYYCAr~ 100 (120)
T d1ai1h1 91 DTAMYYCSRE 100 (120)
T ss_dssp GCEEEEEEEE
T ss_pred ceeEEEEEec
Confidence 9999999754
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.60 E-value=0.00012 Score=59.36 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=51.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+. |. . ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD 90 (119)
T d1rz7h1 11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED 90 (119)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence 5789999999999997555556789987 2221 11 1 2477777653 55789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (119)
T d1rz7h1 91 TAVYYCAAD 99 (119)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEeec
Confidence 999999653
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=7.7e-05 Score=61.07 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEE--E-----eeCCe---EEEEEcccCcCCCeeEE
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP--I-----HDFGY---VALDIIDTIPEDSGTYT 124 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~--~-----~~~~~---~~L~I~~~~~~D~G~Y~ 124 (808)
.|... .+..|+.++|.|.+.++......|+|++||..+..+..... . .++.+ ..|.|..-.-.....|+
T Consensus 11 ~p~~~-e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~yt 89 (108)
T d1ow0a2 11 PPPSE-ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFS 89 (108)
T ss_dssp CCCTT-TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEE
T ss_pred CCCHH-HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEE
Confidence 34443 67789999999999986445669999999999876532211 0 12222 24555544434456899
Q ss_pred EEEEecC
Q psy2145 125 CRAVNLV 131 (808)
Q Consensus 125 C~a~n~~ 131 (808)
|+|.+..
T Consensus 90 C~V~H~s 96 (108)
T d1ow0a2 90 CMVGHEA 96 (108)
T ss_dssp EEEECTT
T ss_pred EEEEeCC
Confidence 9998754
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.60 E-value=0.00014 Score=57.62 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=44.3
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------e-c----------cCcEEEEee--CCeEEEEEcccCcCCCee
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------T-I----------GHRFRPIHD--FGYVALDIIDTIPEDSGT 122 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~r~~~~~~--~~~~~L~I~~~~~~D~G~ 122 (808)
+|++++|.|.+.++.-....+.|+| .|+.+ . . ..|+.+..| ...+.|.|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 5899999999997444456789997 33322 1 1 257777655 355789999999999999
Q ss_pred EEEEEEecC
Q psy2145 123 YTCRAVNLV 131 (808)
Q Consensus 123 Y~C~a~n~~ 131 (808)
|.|......
T Consensus 81 YYCAr~~~~ 89 (103)
T d1oari_ 81 YYCARMWYY 89 (103)
T ss_dssp EEEEEEECS
T ss_pred EEeEEECCC
Confidence 999765443
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.59 E-value=0.00015 Score=59.25 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=52.8
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEee--CCeEEEEEcc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHD--FGYVALDIID 114 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~--~~~~~L~I~~ 114 (808)
+... .+++|+++.|.|.+.++.-....+.|+| .|+. |. . ..|+.+..| ...+.|.|.+
T Consensus 6 sG~~-~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~ 84 (126)
T d1lmka1 6 SGTE-LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS 84 (126)
T ss_dssp CCCE-EECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ECCc-eECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence 3344 6889999999999997555566788987 2222 11 1 257777766 4667899999
Q ss_pred cCcCCCeeEEEEE
Q psy2145 115 TIPEDSGTYTCRA 127 (808)
Q Consensus 115 ~~~~D~G~Y~C~a 127 (808)
++.+|++.|.|..
T Consensus 85 L~~eDTAvYYCAr 97 (126)
T d1lmka1 85 LTSEDSAVYYCAR 97 (126)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEee
Confidence 9999999999964
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=3.3e-05 Score=61.59 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAV 261 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 261 (808)
.+|.+...|.. .|..|++|+|.|.. ..+...+.++|+|.......+... .......+.|.+++.+|+|.|+|...
T Consensus 3 PkP~Lsa~Ps~-~V~~G~~VTL~C~~---~~~~~~f~L~keg~~~~~~~~~~~-~~~~~a~F~i~~v~~~~~G~Y~C~y~ 77 (96)
T d1ugna1 3 PKPTLWAEPGS-VITQGSPVTLRCQG---GQETQEYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGRYRCYYG 77 (96)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEEC---CTTCCCEEEEESSSCCHHHHTSCH-HHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeECCC-ccCCCCcEEEEEeC---CCCCCEEEEEECCCCcccEEEccC-CCCCEEEEEEEecCHHHCCeEEEEEe
Confidence 36777777764 47799999999996 456678899998864221000000 01112268899999999999999976
Q ss_pred e
Q psy2145 262 N 262 (808)
Q Consensus 262 n 262 (808)
.
T Consensus 78 ~ 78 (96)
T d1ugna1 78 S 78 (96)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00011 Score=58.14 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEe--eCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIH--DFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.|+.++|.|.+.++-.+...|+|++||..+.......... ++.........+...|...|+|++.+..
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s 83 (94)
T d1t7va1 14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS 83 (94)
T ss_dssp TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence 4789999999998644567999999999876443332222 2333344445556667778999998864
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0001 Score=61.45 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=47.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCC-CeEEEEeeC--CEEcc-------CC-------Cc-eEEEecCceEEEEEccCCCC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDN-TMKVEWFHN--NVPIK-------SG-------SR-FTETNNFGFVALDIMQCLPE 251 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~~--g~~l~-------~~-------~~-~~~~~~~~~~~L~I~~~~~~ 251 (808)
|..+.+.+|++|+|.|.+...+.+ ...+.|||. |+.+. .+ .. .....+...+.|.|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 455678899999999998422222 236889983 22110 00 01 11222345678999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998864
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.58 E-value=0.00033 Score=56.44 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=51.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt 90 (118)
T d1lo4h1 11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence 5789999999999997655666889998 22221 11 2477777664 457899999999999
Q ss_pred eeEEEEEEe
Q psy2145 121 GTYTCRAVN 129 (808)
Q Consensus 121 G~Y~C~a~n 129 (808)
+.|.|....
T Consensus 91 A~YyCAr~~ 99 (118)
T d1lo4h1 91 AIYYCARGT 99 (118)
T ss_dssp EEEEEEEEE
T ss_pred eEEEecccC
Confidence 999997543
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.58 E-value=0.00026 Score=57.28 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=51.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEee------c-------------cCcEEEEeeC--CeEEEEEcccCc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPVT------I-------------GHRFRPIHDF--GYVALDIIDTIP 117 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l~------~-------------~~r~~~~~~~--~~~~L~I~~~~~ 117 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+. . ..|+.+..|. ..+.|.|.+++.
T Consensus 11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~ 90 (120)
T d1dlfh_ 11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA 90 (120)
T ss_dssp EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence 5789999999999997555566889998 333221 1 1377777663 557899999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|++.|.|....
T Consensus 91 eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 91 EDTGIYYCTGIY 102 (120)
T ss_dssp GGCEEEEEEEEB
T ss_pred CCceEEEeeEec
Confidence 999999996543
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.58 E-value=0.00019 Score=58.96 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIID 114 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~ 114 (808)
+... .+++|+++.|.|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+
T Consensus 6 sg~~-~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~ 84 (130)
T d1rhhb1 6 SGAE-VKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN 84 (130)
T ss_dssp CCCE-EECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCc-eECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence 3444 6789999999999997444555788987 3322 111 2477777664 557899999
Q ss_pred cCcCCCeeEEEEEEe
Q psy2145 115 TIPEDSGTYTCRAVN 129 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n 129 (808)
++.+|++.|.|....
T Consensus 85 L~~eDtAvYyCAr~~ 99 (130)
T d1rhhb1 85 LRSDDTAVYYCARDF 99 (130)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCCcEEEEEEeec
Confidence 999999999997653
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.58 E-value=0.00011 Score=59.64 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=49.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD 90 (119)
T d1eapb1 11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSED 90 (119)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCc
Confidence 5789999999999997544455788987 2222 221 2477777653 55789999999999
Q ss_pred CeeEEEEE
Q psy2145 120 SGTYTCRA 127 (808)
Q Consensus 120 ~G~Y~C~a 127 (808)
++.|.|..
T Consensus 91 TAvYYCAr 98 (119)
T d1eapb1 91 SAVYFCKR 98 (119)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEE
Confidence 99999954
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.58 E-value=0.00016 Score=58.46 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=50.2
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.--...+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eD 90 (118)
T d1ct8b1 11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTED 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCc
Confidence 6889999999999997544455788987 2322 211 2367766553 55789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (118)
T d1ct8b1 91 SAIYYCARY 99 (118)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeee
Confidence 999999653
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.57 E-value=0.00012 Score=60.31 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=50.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------e-----------ccCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------T-----------IGHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~-----------~~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ . ...|+.+..|. ..+.|.|.+++.+|
T Consensus 11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eD 90 (125)
T d1rihh1 11 LAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSED 90 (125)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCccc
Confidence 6899999999999996433445688887 33221 1 12477776664 55789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 tAvYYCAR~ 99 (125)
T d1rihh1 91 SAVYYCARE 99 (125)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeee
Confidence 999999754
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.57 E-value=2.4e-05 Score=64.79 Aligned_cols=73 Identities=14% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE---ee---c---------cCcEEEE-eeCCeEEEEEcccC
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP---VT---I---------GHRFRPI-HDFGYVALDIIDTI 116 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~---l~---~---------~~r~~~~-~~~~~~~L~I~~~~ 116 (808)
.|..+ .+.+|++|+|.|.... ....+.||| .|.. |. . ..++... .+...+.|.|.++.
T Consensus 4 sP~~~-~~~~G~svtL~C~~~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 79 (112)
T d2cdeb1 4 TPRYL-VIGTGKKITLECSQTM---GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR 79 (112)
T ss_dssp ECSEE-EEETTCCBCCEEEETT---CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred CCCEE-EECCCCCEEEEEEEeC---CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence 46666 8899999999999752 335799998 2221 11 0 0112221 22344689999999
Q ss_pred cCCCeeEEEEEEecC
Q psy2145 117 PEDSGTYTCRAVNLV 131 (808)
Q Consensus 117 ~~D~G~Y~C~a~n~~ 131 (808)
.+|+|.|.|.+....
T Consensus 80 ~~Dsa~YyCA~~~~~ 94 (112)
T d2cdeb1 80 PSHTSQYLCASSENI 94 (112)
T ss_dssp TTTCSEEEEEEECSS
T ss_pred ccccccEEEEEecCC
Confidence 999999999887543
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=1.4e-05 Score=63.88 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEe
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVN 129 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 129 (808)
.|.. .|..|++|+|.|... .+...+.+||+|.......+.. ........+.|.+++.+|+|.|+|....
T Consensus 10 ~Ps~--~V~~G~~VTL~C~~~---~~~~~f~L~keg~~~~~~~~~~-~~~~~~a~F~i~~v~~~~~G~Y~C~y~~ 78 (96)
T d1ugna1 10 EPGS--VITQGSPVTLRCQGG---QETQEYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGS 78 (96)
T ss_dssp ESCS--EEETTCCEEEEEECC---TTCCCEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred ECCC--ccCCCCcEEEEEeCC---CCCCEEEEEECCCCcccEEEcc-CCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence 4554 588999999999965 4566899999886432111110 0111234799999999999999998754
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.57 E-value=0.00033 Score=56.16 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE-EecCceEEE-EEccCCCCCcEEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE-TNNFGFVAL-DIMQCLPEDSGVYTCRA 260 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L-~I~~~~~~D~G~Y~C~a 260 (808)
.|.+.+-+.. .+..|+..+|.|.+.+.-.+...|.|++||..+........ ..++|.+.+ ....+..+|...|+|++
T Consensus 4 ~P~v~v~~~~-p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V 82 (103)
T d1hdma1 4 FPIAEVFTLK-PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIV 82 (103)
T ss_dssp CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEE
T ss_pred CCeEEEECCC-chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEE
Confidence 4444443322 24578999999999876666799999999998765433322 233343221 11233455666899999
Q ss_pred EeCc
Q psy2145 261 VNAL 264 (808)
Q Consensus 261 ~n~~ 264 (808)
.+..
T Consensus 83 ~H~~ 86 (103)
T d1hdma1 83 THEP 86 (103)
T ss_dssp EETT
T ss_pred EeCC
Confidence 9864
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=9.5e-05 Score=57.99 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=56.0
Q ss_pred ecCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe-CCEEee-ccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 53 VTKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK-NGRPVT-IGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 53 ~~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~-~g~~l~-~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
...|.-+ .+.+|+++.+.|.++ +|...++-++ ++..+. .+..+......| ++|.++...|+|.|.|.|...
T Consensus 9 ~~~p~~V-~v~eg~~~vIPC~vT---~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~G---f~I~~~~~~~~g~y~C~a~~~ 81 (95)
T d1fltx_ 9 SEIPEII-HMTEGRELVIPCRVT---SPNITVTLKKFPLDTLIPDGKRIIWDSRKG---FIISNATYKEIGLLTCEATVN 81 (95)
T ss_dssp CSSCEEE-EECTTSCEEECCCBS---CTTSCCEEEETTTEEECCCSSSEEEETTTE---EEESSCCGGGCEEEEEEEEET
T ss_pred CCCCCEE-EEeCCCCEEEEccCC---CCCceeEEEeccCCccCCCCCEEEECCCCC---EEEeCCCcccCeEEEEEEEEC
Confidence 3345545 899999999999998 6777775444 666554 444444333333 889999999999999999765
Q ss_pred CcceEEEEEE
Q psy2145 131 VGFAEVQATL 140 (808)
Q Consensus 131 ~g~~~~~~~l 140 (808)
|....+.-|
T Consensus 82 -g~~~~S~yl 90 (95)
T d1fltx_ 82 -GHLYKTNYL 90 (95)
T ss_dssp -TEEEEEEEE
T ss_pred -CEEEEEEEE
Confidence 555444433
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00011 Score=60.10 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=52.1
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEE--E-----EeCCE---EEEEEccCCC
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRFHV--Q-----HDFGY---VTLDITKCVP 703 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~~~--~-----~~~~~---~~L~I~~v~~ 703 (808)
+|.+....+....+..|+.++|.|.+... +| ...|.|++||+.+..+..... . .++.+ +.|.|..-.-
T Consensus 4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f-~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w 82 (108)
T d1ow0a2 4 RPEVHLLPPPSEELALNELVTLTCLARGF-SPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW 82 (108)
T ss_dssp CCEEEEECCCTTTTTSSSEEEEEEEEEEE-SSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred CCEEEEECCCHHHhccCCceEEEEEEEEe-ECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence 46666655555567789999999999532 45 559999999999875432211 1 12222 3455544333
Q ss_pred CCcEEEEEEEEeCC
Q psy2145 704 ADSGVYMCKAINRA 717 (808)
Q Consensus 704 ~D~G~Y~C~A~N~~ 717 (808)
.....|+|.+....
T Consensus 83 ~~g~~ytC~V~H~s 96 (108)
T d1ow0a2 83 KKGDTFSCMVGHEA 96 (108)
T ss_dssp HHTCCEEEEEECTT
T ss_pred CCCCEEEEEEEeCC
Confidence 33567999997753
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.56 E-value=0.00018 Score=58.73 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=50.2
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eD 90 (121)
T d1j05b_ 11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED 90 (121)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCc
Confidence 6899999999999986443445788987 23221 11 1377776653 55789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d1j05b_ 91 TAVYYCAPF 99 (121)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEeEee
Confidence 999999754
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.55 E-value=0.00018 Score=52.69 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=57.0
Q ss_pred ceEeecCCeEEEEEEEeecCCCccEEEEEE-CC---EeccCCCc-EEEEee---CcEEEEEEccCCCCCCeEEEEEEEcC
Q psy2145 324 DIHVAENQAAHFEARLIPVGDSKLKVTWLR-NG---VPIQASNR-VSTMHD---FGYVALNFKYTYPEDSGTYTCRAVNE 395 (808)
Q Consensus 324 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g---~~l~~~~~-~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~n~ 395 (808)
...+..|+.+.|+|.+. .-.-.|.++|-| +| .+|..... .....+ -....|.+..+.++|.|.|+|.|.-.
T Consensus 12 ~hs~~~G~~f~leCPVk-YC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVK-YCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEEECTTSCEEEEEEEE-CSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred eeeEecCCceEecCcch-hhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 35678999999999984 445668999988 55 35544332 222222 24557999999999999999999765
Q ss_pred CcceEE-EEEEEE
Q psy2145 396 LGEAVT-SSTLFV 407 (808)
Q Consensus 396 ~g~~~~-~~~l~V 407 (808)
.|-.++ ++.|.|
T Consensus 91 s~vieSHSvti~V 103 (104)
T d1xaua_ 91 SQVINSHSVTIHV 103 (104)
T ss_dssp TEEEECCCEEEEE
T ss_pred hhheecceEEEEe
Confidence 554432 455544
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.55 E-value=0.00027 Score=57.84 Aligned_cols=69 Identities=23% Similarity=0.332 Sum_probs=52.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|+|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD 90 (127)
T d2fx7h1 11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED 90 (127)
T ss_dssp EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence 5789999999999997544556788987 2322 111 2577777664 55789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 TavYYCAR~~ 100 (127)
T d2fx7h1 91 TAVYYCAREG 100 (127)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEeecc
Confidence 9999998654
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.54 E-value=0.00015 Score=58.58 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+-| .. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD 90 (120)
T d1ad9b1 11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED 90 (120)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence 6899999999999997544455788987 22221 11 2577777664 56789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (120)
T d1ad9b1 91 TAFYFCARE 99 (120)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEEEc
Confidence 999999754
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.54 E-value=0.00012 Score=59.46 Aligned_cols=67 Identities=25% Similarity=0.460 Sum_probs=50.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..| ...+.|.|.+++.+|
T Consensus 11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD 90 (121)
T d2p49b1 11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED 90 (121)
T ss_dssp EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence 5789999999999997544556788987 2221 111 147777765 355789999999999
Q ss_pred CeeEEEEE
Q psy2145 120 SGTYTCRA 127 (808)
Q Consensus 120 ~G~Y~C~a 127 (808)
++.|.|..
T Consensus 91 tAvYYCAr 98 (121)
T d2p49b1 91 TATYYCAA 98 (121)
T ss_dssp CEEEEEEE
T ss_pred eeEEeeec
Confidence 99999975
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.54 E-value=0.0001 Score=57.89 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEE-eeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
++.++|.|.+.++-.....|+|++||..+..+...... .++.........+..+|...|+|++.+..
T Consensus 15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~s 82 (91)
T d3frua1 15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEG 82 (91)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCC
Confidence 45799999999865566799999999987654322221 22222222223334456678999998764
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00019 Score=59.79 Aligned_cols=70 Identities=9% Similarity=0.071 Sum_probs=43.4
Q ss_pred eeecCCCeEEEEEEEeecCCCCeEE-EEeeC--CE-E-c------------cCCCceE--EEecCceEEEEEccCCCCCc
Q psy2145 193 CEIKEGQRAHFECRLIPVSDNTMKV-EWFHN--NV-P-I------------KSGSRFT--ETNNFGFVALDIMQCLPEDS 253 (808)
Q Consensus 193 ~~v~~G~~v~L~C~~~~~~~p~~~v-~W~~~--g~-~-l------------~~~~~~~--~~~~~~~~~L~I~~~~~~D~ 253 (808)
..+.+|++|+|.|.+.....+.... .|++. +. + + ....++. .......++|.|.+++.+|+
T Consensus 10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 89 (118)
T d1yjdc1 10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT 89 (118)
T ss_dssp EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence 3466899999999985323333333 44441 11 1 1 0112222 23344567899999999999
Q ss_pred EEEEEEEEe
Q psy2145 254 GVYTCRAVN 262 (808)
Q Consensus 254 G~Y~C~a~n 262 (808)
|.|.|.+..
T Consensus 90 avYyCa~~~ 98 (118)
T d1yjdc1 90 DIYFCKIEV 98 (118)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 999998764
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.53 E-value=0.00014 Score=59.33 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=47.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE--EEeeCCeEEEEEcccCcCCC-eeEEEEEEecCcce
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR--PIHDFGYVALDIIDTIPEDS-GTYTCRAVNLVGFA 134 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~--~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~~g~~ 134 (808)
.+..+..++|.|.+.++......|+|++||..+..+.... ...++.........+..+|- ..|+|.+.+.....
T Consensus 20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s~~~ 96 (107)
T d1hxmb2 20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNKN 96 (107)
T ss_dssp GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETTSGG
T ss_pred HHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECCCCC
Confidence 6778899999999998655567999999998776432211 12233332222233333442 36999999865443
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.53 E-value=0.00012 Score=59.88 Aligned_cols=72 Identities=14% Similarity=0.278 Sum_probs=52.4
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~ 113 (808)
++... .+++|+++.|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.
T Consensus 6 esg~~-~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~ 84 (127)
T d1n0xh1 6 QSGAE-VKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR 84 (127)
T ss_dssp ECCCE-EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred eECCc-eECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence 34444 7899999999999997544445788987 3322 211 2477777663 55789999
Q ss_pred ccCcCCCeeEEEEE
Q psy2145 114 DTIPEDSGTYTCRA 127 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a 127 (808)
+++.+|++.|.|.-
T Consensus 85 ~L~~eDtAvYYCAR 98 (127)
T d1n0xh1 85 SLRSADTAVYYCAR 98 (127)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCCceEEEEEe
Confidence 99999999999963
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=0.0001 Score=57.63 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE---EEEeeCCeE---EEEEcccCcCCCeeEEEEEEecC
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF---RPIHDFGYV---ALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~---~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
..++.++|.|.+.++......|+|++||+.+..+... ....++... .|.|. ..|...|+|.+.+..
T Consensus 13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQG 84 (89)
T ss_dssp SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSS
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECC
Confidence 3467899999999865667799999999998754322 122233222 34443 445567999998753
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.52 E-value=0.00024 Score=57.03 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=46.2
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEE-eeCCeE----EEEEcccCcCCCeeEEEEEEecCc
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPI-HDFGYV----ALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~-~~~~~~----~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
+..|+..+|.|.+.++-.+...|.|++||..+......... .+++.+ .|.| ..+|...|+|++.+..-
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l 87 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPD 87 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTT
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCC
Confidence 35688999999999865567899999999987543322222 223322 3444 44566689999998743
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.52 E-value=0.00021 Score=58.18 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=50.6
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD 90 (123)
T d1mqkh_ 11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED 90 (123)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence 5789999999999996433445688987 2321 211 2477777653 55679999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 tAvYYCAr~~ 100 (123)
T d1mqkh_ 91 TAMYYCVRHE 100 (123)
T ss_dssp CEEEEEEEEE
T ss_pred ccceeEEecC
Confidence 9999997654
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.52 E-value=0.00017 Score=59.13 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=52.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|+|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD 90 (128)
T d2nxyd1 11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD 90 (128)
T ss_dssp EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence 6799999999999997544555788987 2211 111 2578887764 56789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 TA~YYCAr~~ 100 (128)
T d2nxyd1 91 TAVYFCAGVY 100 (128)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEeEEe
Confidence 9999998754
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.52 E-value=0.00019 Score=58.61 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=50.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+- |. . ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD 90 (122)
T d1bz7b1 11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED 90 (122)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence 5789999999999997443455788987 2211 11 1 2577777664 55789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|...+
T Consensus 91 TAvYYCAr~~ 100 (122)
T d1bz7b1 91 TAIYYCTRGG 100 (122)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEeecCC
Confidence 9999997643
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.52 E-value=0.00021 Score=58.36 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |. . ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD 90 (126)
T d1dfbh1 11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED 90 (126)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence 5789999999999997544455788987 2221 21 1 2577777764 55789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 tavYYCAr~~ 100 (126)
T d1dfbh1 91 MALYYCVKGR 100 (126)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEEecc
Confidence 9999997543
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00016 Score=58.57 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=47.5
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE-EEeeCCe----EEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR-PIHDFGY----VALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~-~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
...+.+++|.|.+.++......|+|++||..+..+.... ...+++. ..|.|..-.......|+|+|.+...
T Consensus 18 ~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 93 (104)
T d1o0va1 18 GHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH 93 (104)
T ss_dssp SCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred cCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence 355678999999998644556899999999987543322 2223333 2466655443445679999998743
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.51 E-value=0.00017 Score=58.79 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=51.5
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD 90 (125)
T d1op3h1 11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED 90 (125)
T ss_dssp EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence 5789999999999997544455789998 2222 111 2477877664 56789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 TAvYYCAr~~ 100 (125)
T d1op3h1 91 TAIYYCARKG 100 (125)
T ss_dssp CEEEEEEEEC
T ss_pred ceeEeEeecc
Confidence 9999997643
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.51 E-value=0.00016 Score=59.79 Aligned_cols=69 Identities=22% Similarity=0.426 Sum_probs=50.8
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeC--CE---Ee---e----------------ccCcEEEEee--CCeEEEEEcc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKN--GR---PV---T----------------IGHRFRPIHD--FGYVALDIID 114 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~---~l---~----------------~~~r~~~~~~--~~~~~L~I~~ 114 (808)
.+++|++++|.|.+.++.-....+.|+|. |+ -| . ...|+.+..| ...+.|.|.+
T Consensus 11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~ 90 (127)
T d1i3ua_ 11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS 90 (127)
T ss_dssp ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence 57899999999999964434567889972 21 11 1 0147777665 3567899999
Q ss_pred cCcCCCeeEEEEEEe
Q psy2145 115 TIPEDSGTYTCRAVN 129 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~n 129 (808)
++.+|++.|.|....
T Consensus 91 l~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 91 LKPEDTAVYYCAAKT 105 (127)
T ss_dssp CCGGGCEEEEEEEES
T ss_pred ccccceeEEEEEEEe
Confidence 999999999998653
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.50 E-value=0.00016 Score=58.87 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=49.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD 90 (121)
T d1ol0a_ 11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED 90 (121)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence 5789999999999996433344678987 2222 211 2477777763 55789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d1ol0a_ 91 TAVYYCARE 99 (121)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEEEe
Confidence 999999654
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00014 Score=59.06 Aligned_cols=71 Identities=18% Similarity=0.394 Sum_probs=47.7
Q ss_pred cCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE----EEEeeCCe---EEEEEcccCcCCCeeEEEEEEecCc
Q psy2145 62 LRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF----RPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLVG 132 (808)
Q Consensus 62 v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~----~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g 132 (808)
...++.++|.|.+.++......|.|++||..+..+.-. ....++.+ ..|.|..-.-.....|+|++.+...
T Consensus 16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l 93 (105)
T d1fp5a2 16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA 93 (105)
T ss_dssp SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence 34577899999999864456899999999988654311 11122222 2566665554556689999998654
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00018 Score=59.86 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=44.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEE-Ee--CCE--Eee------------ccCcEEE--EeeCCeEEEEEcccCcCCCe
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEW-FK--NGR--PVT------------IGHRFRP--IHDFGYVALDIIDTIPEDSG 121 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W-~~--~g~--~l~------------~~~r~~~--~~~~~~~~L~I~~~~~~D~G 121 (808)
.+.+|++|+|.|.............| ++ ++. .+. ...+++. ......++|.|.+++.+|+|
T Consensus 11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 90 (118)
T d1yjdc1 11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD 90 (118)
T ss_dssp EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence 46789999999998742223333344 44 221 111 1123343 33456678999999999999
Q ss_pred eEEEEEEec
Q psy2145 122 TYTCRAVNL 130 (808)
Q Consensus 122 ~Y~C~a~n~ 130 (808)
.|.|.+...
T Consensus 91 vYyCa~~~~ 99 (118)
T d1yjdc1 91 IYFCKIEVM 99 (118)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEecc
Confidence 999988654
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.49 E-value=0.00026 Score=57.24 Aligned_cols=68 Identities=16% Similarity=0.357 Sum_probs=50.1
Q ss_pred ccCCCCcEEEEEEEeeCCCC-CceEEEEe--CCEEee------c----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDS-NLKVEWFK--NGRPVT------I----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p-~~~v~W~~--~g~~l~------~----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-. ...+.|+| .|+-+. . ..|+.+..| ...+.|.|.+++.+|
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD 90 (119)
T d1ncwh1 11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED 90 (119)
T ss_dssp EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence 67899999999999964332 34678987 343221 1 247777765 355789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (119)
T d1ncwh1 91 TATYYCAGL 99 (119)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeEe
Confidence 999999654
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.49 E-value=0.00018 Score=58.87 Aligned_cols=68 Identities=16% Similarity=0.363 Sum_probs=48.7
Q ss_pred ccCCCCcEEEEEEEeeCC--CCCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcC
Q psy2145 61 NLRERGHAHFECKLEPVT--DSNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPE 118 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~--~p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~ 118 (808)
.+++|++++|.|.+.++. .....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+
T Consensus 11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e 90 (123)
T d1r0ah1 11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA 90 (123)
T ss_dssp EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence 578999999999998632 2334678997 23221 11 1477776653 4578999999999
Q ss_pred CCeeEEEEEE
Q psy2145 119 DSGTYTCRAV 128 (808)
Q Consensus 119 D~G~Y~C~a~ 128 (808)
|++.|.|...
T Consensus 91 DsAvYyCAr~ 100 (123)
T d1r0ah1 91 DTAIYYCAQS 100 (123)
T ss_dssp GCEEEEEEEE
T ss_pred cceEEeeccc
Confidence 9999999754
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.0003 Score=56.87 Aligned_cols=85 Identities=13% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCeEEeecCCCcc-ccCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcE-EEEEeCCE----EEEEEccCCCCCcE
Q psy2145 635 KPIFTQLLTGTSE-IMEGQSAHYDCRVVPVGDP-TMRFEWFVNGVELKMGSRF-HVQHDFGY----VTLDITKCVPADSG 707 (808)
Q Consensus 635 ~P~~~~~~~~~~~-v~~G~~v~l~C~v~~~g~P-~p~i~W~~~g~~l~~~~~~-~~~~~~~~----~~L~I~~v~~~D~G 707 (808)
+|.+....+.... ...+.+++|.|.+... .| ...|.|++||+.+..+... .....++. +.|.|..-......
T Consensus 4 pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f-~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~ 82 (104)
T d1o0va1 4 PPTVKILQSSCDGGGHFPPTIQLLCLVSGY-TPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 82 (104)
T ss_dssp CCEEEEEEECCCTTSCCCSEEEEEEEEEEE-CCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCEEEEECCCcccccCCCCeEEEEEEEEEE-ECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCC
Confidence 4654443332222 3456789999999533 45 4589999999998754322 22223332 34555543323356
Q ss_pred EEEEEEEeCCcce
Q psy2145 708 VYMCKAINRAGEA 720 (808)
Q Consensus 708 ~Y~C~A~N~~G~~ 720 (808)
.|+|.+.......
T Consensus 83 ~ytC~V~H~~~t~ 95 (104)
T d1o0va1 83 TYTCQVTYQGHTF 95 (104)
T ss_dssp CEEEEEEETTEEE
T ss_pred EEEEEEEECCEeE
Confidence 6999999885433
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.47 E-value=0.0002 Score=58.88 Aligned_cols=83 Identities=17% Similarity=0.277 Sum_probs=56.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD 90 (135)
T d1ieha_ 11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED 90 (135)
T ss_dssp EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence 5789999999999997544455788987 2221 111 2577777664 44689999999999
Q ss_pred CeeEEEEEEecCcce--EEEEEEEEe
Q psy2145 120 SGTYTCRAVNLVGFA--EVQATLQCR 143 (808)
Q Consensus 120 ~G~Y~C~a~n~~g~~--~~~~~l~V~ 143 (808)
++.|.|......+.+ -.-..|+|.
T Consensus 91 TAvYYCAr~~~~~~d~WGqGT~VTVs 116 (135)
T d1ieha_ 91 TAVYYCAKYSGGALDAWGQGTQVTVS 116 (135)
T ss_dssp CEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred ceeeEEEEecCCccceeCCCEEEEEE
Confidence 999999754322211 223456664
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.47 E-value=0.00017 Score=56.28 Aligned_cols=75 Identities=12% Similarity=0.283 Sum_probs=47.0
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE--EEecCc-e---EEEEEccCCCCCcEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT--ETNNFG-F---VALDIMQCLPEDSGVY 256 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~--~~~~~~-~---~~L~I~~~~~~D~G~Y 256 (808)
||.+.+.. ....++.++|.|.+.+.......|+|++||+.+..+.... ..+.+| + ..|.|.. ++...|
T Consensus 3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~y 76 (89)
T d2mhaa1 3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYY 76 (89)
T ss_dssp CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTC
T ss_pred CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEE
Confidence 55555422 1234678999999986555578999999999987543221 122222 2 2355543 344479
Q ss_pred EEEEEeC
Q psy2145 257 TCRAVNA 263 (808)
Q Consensus 257 ~C~a~n~ 263 (808)
+|.+.+.
T Consensus 77 tC~V~H~ 83 (89)
T d2mhaa1 77 TCHVYHQ 83 (89)
T ss_dssp EEEEECS
T ss_pred EEEEEEC
Confidence 9999875
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.47 E-value=0.0003 Score=57.51 Aligned_cols=69 Identities=23% Similarity=0.426 Sum_probs=49.6
Q ss_pred CccccCCceEEEEEEEeeCCC----CCeEEEEEEC--CEEcc----------------CCCcEEEEEe--CCEEEEEEcc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGD----PTMRFEWFVN--GVELK----------------MGSRFHVQHD--FGYVTLDITK 700 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~----P~p~i~W~~~--g~~l~----------------~~~~~~~~~~--~~~~~L~I~~ 700 (808)
...+.+|++|+|.|.+ .|. +...+.||+- |+.+. -.+||.+..| .....|+|.+
T Consensus 9 ~~~v~PG~sv~LsC~~--SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~ 86 (120)
T d2agjh1 9 PTLVKPTQTLTLTCTF--SGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTN 86 (120)
T ss_dssp CSBCCSSSEEEEEEEE--ESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEES
T ss_pred CeeECCCCCEEEEEEE--cccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEe
Confidence 3567889999999998 453 3357889972 32110 1257777664 3467899999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 701 CVPADSGVYMCKAIN 715 (808)
Q Consensus 701 v~~~D~G~Y~C~A~N 715 (808)
++++|++.|.|....
T Consensus 87 l~~eDsAvYyCAr~~ 101 (120)
T d2agjh1 87 LDPVDTATYYCARTS 101 (120)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred eeeccceEEeeEecC
Confidence 999999999996544
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.46 E-value=0.00043 Score=56.10 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=50.8
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------cC----------CCceEEEec--CceEEEEEccCCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------KS----------GSRFTETNN--FGFVALDIMQCLPE 251 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~~~ 251 (808)
...+.+|++++|.|.+.+.......+.|+|. |+.+ .. ..|+.+..+ ...+.|.|.+++.+
T Consensus 8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e 87 (119)
T d1kxvc_ 8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD 87 (119)
T ss_dssp CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence 4568899999999999755555667899983 2211 10 135665544 34568999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|++.|.|....
T Consensus 88 DtA~YYCAr~~ 98 (119)
T d1kxvc_ 88 DTAMYYCKPSL 98 (119)
T ss_dssp GCEEEEEEEEE
T ss_pred CcceEeeeecc
Confidence 99999997654
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00017 Score=57.25 Aligned_cols=78 Identities=10% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE--EEecCc-eEEEEEccCCCCCcEEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT--ETNNFG-FVALDIMQCLPEDSGVYTCR 259 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~--~~~~~~-~~~L~I~~~~~~D~G~Y~C~ 259 (808)
||.+.+.... ..++.++|.|.+.+.......|+|++||+.+..+.... ...+++ +.......+..++...|+|+
T Consensus 3 PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~ 79 (95)
T d1k5na1 3 PPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCH 79 (95)
T ss_dssp CCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEE
T ss_pred CCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEE
Confidence 5666554322 23567999999988766788999999999887543221 122222 22222223344555689999
Q ss_pred EEeC
Q psy2145 260 AVNA 263 (808)
Q Consensus 260 a~n~ 263 (808)
+.+.
T Consensus 80 V~H~ 83 (95)
T d1k5na1 80 VQHE 83 (95)
T ss_dssp EECT
T ss_pred EEEC
Confidence 9885
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.46 E-value=0.00029 Score=58.14 Aligned_cols=68 Identities=22% Similarity=0.395 Sum_probs=49.1
Q ss_pred ccCCCCcEEEEEEEeeCC--CCCceEEEEe--CCEEee------c----------cCcEEEEeeC--CeEEEEEcccCcC
Q psy2145 61 NLRERGHAHFECKLEPVT--DSNLKVEWFK--NGRPVT------I----------GHRFRPIHDF--GYVALDIIDTIPE 118 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~--~p~~~v~W~~--~g~~l~------~----------~~r~~~~~~~--~~~~L~I~~~~~~ 118 (808)
.+++|++++|.|.+.++. +....+.|+| .|+.+. . ..|+.+..|. ..+.|.|.+++.+
T Consensus 11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e 90 (126)
T d1etzb1 11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS 90 (126)
T ss_dssp EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence 578999999999998632 3344677986 222111 1 2477777663 4578999999999
Q ss_pred CCeeEEEEEE
Q psy2145 119 DSGTYTCRAV 128 (808)
Q Consensus 119 D~G~Y~C~a~ 128 (808)
|++.|.|...
T Consensus 91 DtAvYyCAr~ 100 (126)
T d1etzb1 91 DTATYHCARR 100 (126)
T ss_dssp GCEEEEEEEE
T ss_pred ccceEEEEEe
Confidence 9999999754
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.45 E-value=8.8e-05 Score=59.71 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=49.7
Q ss_pred CCeEE-eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCce---EEEEEccCCCCCcEEEEE
Q psy2145 183 APIFT-TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF---VALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 183 ~P~~~-~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C 258 (808)
+|.+. ..|.. ....++.++|.|.+.+.......|.|.++|.............++.+ ..|.|..-... .|.|+|
T Consensus 5 aP~V~~l~p~~-~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC 82 (101)
T d1kcvh2 5 APSVFPLVPGS-ATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTC 82 (101)
T ss_dssp CCEEEEECCCS-CCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEE
T ss_pred CCEEEeECCCc-cccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEE
Confidence 44443 34432 23468899999999865555789999988865321111111222221 35777665553 678999
Q ss_pred EEEeCcee
Q psy2145 259 RAVNALGQ 266 (808)
Q Consensus 259 ~a~n~~g~ 266 (808)
+|.+....
T Consensus 83 ~V~H~~~~ 90 (101)
T d1kcvh2 83 LVAHPKSS 90 (101)
T ss_dssp EEEEGGGT
T ss_pred EEEeCCCC
Confidence 99986543
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.45 E-value=0.00015 Score=59.15 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEc
Q psy2145 55 KPKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDII 113 (808)
Q Consensus 55 ~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~ 113 (808)
++... .+++|+++.|.|.+.++.--...+.|+| .|+. |.. ..|+.+..|. ..+.|.|.
T Consensus 6 esg~~-~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~ 84 (124)
T d2b1hh1 6 QSGAE-VKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS 84 (124)
T ss_dssp ECCCE-EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred eECCc-eECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence 34444 6799999999999996433344678987 2221 111 2577777664 45789999
Q ss_pred ccCcCCCeeEEEEE
Q psy2145 114 DTIPEDSGTYTCRA 127 (808)
Q Consensus 114 ~~~~~D~G~Y~C~a 127 (808)
+++.+|++.|.|..
T Consensus 85 ~L~~eDTA~YYCAR 98 (124)
T d2b1hh1 85 SLKPSDTALYYCAR 98 (124)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccccccceEEEEee
Confidence 99999999999954
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.45 E-value=0.00021 Score=58.17 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=51.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-------------cCcEEEEeeC--CeEEEEEcccCc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-------------GHRFRPIHDF--GYVALDIIDTIP 117 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-------------~~r~~~~~~~--~~~~L~I~~~~~ 117 (808)
.+++|++++|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.
T Consensus 11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 90 (122)
T d1q9rb1 11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA 90 (122)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeecc
Confidence 6789999999999997544455788997 2321 110 1477777664 557899999999
Q ss_pred CCCeeEEEEEEe
Q psy2145 118 EDSGTYTCRAVN 129 (808)
Q Consensus 118 ~D~G~Y~C~a~n 129 (808)
+|++.|.|....
T Consensus 91 eDTAvYYCar~~ 102 (122)
T d1q9rb1 91 EDSATYYCARDH 102 (122)
T ss_dssp GGCEEEEEEECC
T ss_pred CcceEEEEEecC
Confidence 999999998643
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.45 E-value=0.00014 Score=59.79 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=52.3
Q ss_pred CCCccccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcc
Q psy2145 56 PKSIENLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIID 114 (808)
Q Consensus 56 p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~ 114 (808)
+... .+++|++++|.|.+.++.-....+.|+| .|+- |.. ..|+.+..|. ..+.|.|.+
T Consensus 7 sg~~-~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s 85 (130)
T d1rzga1 7 SGAE-VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS 85 (130)
T ss_dssp CCCE-EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred ECCc-eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence 3344 6899999999999987544455788987 2221 111 2477777664 556799999
Q ss_pred cCcCCCeeEEEEEE
Q psy2145 115 TIPEDSGTYTCRAV 128 (808)
Q Consensus 115 ~~~~D~G~Y~C~a~ 128 (808)
++.+|++.|.|...
T Consensus 86 L~~eDtA~YYCAr~ 99 (130)
T d1rzga1 86 LRSEDTAVFYCASP 99 (130)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred cCCCccEEEEEEEe
Confidence 99999999999853
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.45 E-value=0.00029 Score=57.84 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=51.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|++++|.|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD 90 (127)
T d2fb4h1 11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED 90 (127)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence 5789999999999997544455788987 22211 11 2577777764 55789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 91 TA~YYCAr~~ 100 (127)
T d2fb4h1 91 TGVYFCARDG 100 (127)
T ss_dssp CEEEEEEEEC
T ss_pred eeEEEEEEec
Confidence 9999997643
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00028 Score=56.81 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=45.3
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc---EEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR---FRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r---~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++.++|.|.+.++......|+|++||..+..+.. .....++.+ ..|.|..-.-.....|+|+|.+..
T Consensus 19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG 92 (102)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 35678999999986445679999999998864321 111122322 246665554455678999999864
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.44 E-value=0.00024 Score=58.29 Aligned_cols=68 Identities=22% Similarity=0.395 Sum_probs=50.3
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+. |.. ..|+.+..|. ..+.|.|.+++.+|
T Consensus 10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD 89 (126)
T d1rjca1 10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED 89 (126)
T ss_dssp EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence 5789999999999997555566789998 2322 221 1477777654 44679999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 90 TAvYYCAr~ 98 (126)
T d1rjca1 90 TAMYYCAAD 98 (126)
T ss_dssp CEEEEEEEC
T ss_pred CceeEEEee
Confidence 999999754
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.00014 Score=59.30 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=52.2
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEE---EecCce----EEEEEccCCCCCcE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTE---TNNFGF----VALDIMQCLPEDSG 254 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~---~~~~~~----~~L~I~~~~~~D~G 254 (808)
.+|.+.+.+.......+..++|.|.+.+.......|+|++||..+..+..... ...+|. ..|.|..-.+....
T Consensus 4 ~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~ 83 (107)
T d1mjul2 4 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 83 (107)
T ss_dssp BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred cCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCC
Confidence 45666554433332346789999999865445679999999998865421111 122232 24666655544466
Q ss_pred EEEEEEEeCce
Q psy2145 255 VYTCRAVNALG 265 (808)
Q Consensus 255 ~Y~C~a~n~~g 265 (808)
.|+|+|.+...
T Consensus 84 ~ytC~V~H~~~ 94 (107)
T d1mjul2 84 SYTCEATHKTS 94 (107)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEECCC
Confidence 89999998543
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.44 E-value=0.00025 Score=57.20 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=51.1
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-----------CCCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-----------SGSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-----------~~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.....+.+|++|+|.|.+++.......+.|+| .|+. |. -..|+.+..+ .....|.|.++
T Consensus 7 sg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L 86 (117)
T d1iqdb1 7 SGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSL 86 (117)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeeccc
Confidence 34456889999999999965444456688988 2221 11 1234555443 34567999999
Q ss_pred CCCCcEEEEEEEEeC
Q psy2145 249 LPEDSGVYTCRAVNA 263 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n~ 263 (808)
+.+|++.|.|.....
T Consensus 87 ~~eDtAvYYCA~~~~ 101 (117)
T d1iqdb1 87 RSDDTAVYYCAVPDP 101 (117)
T ss_dssp CGGGCEEEEEEECSS
T ss_pred CcCcceEEEEeEcCC
Confidence 999999999987543
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.43 E-value=0.00019 Score=58.33 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=50.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------eec-----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VTI-----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+- |.. ..|+.+..| ...+.|.|.+++.+|
T Consensus 11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eD 90 (124)
T d1yedb1 11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSED 90 (124)
T ss_dssp EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGG
T ss_pred eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCc
Confidence 6789999999999997544455788987 2221 211 257777776 366789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 TAvYYCAR~ 99 (124)
T d1yedb1 91 SAVYFCTRW 99 (124)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEeccc
Confidence 999999753
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.43 E-value=0.00054 Score=55.27 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=51.7
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------cc-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IK-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.....+.+|++++|.|.+++.......+.|+|. |+. |. . ..|+.+..+ ...+.|.|.+
T Consensus 5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s 84 (117)
T d1um5h1 5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS 84 (117)
T ss_dssp ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence 3445678899999999999654455667899882 321 11 1 135555433 3556799999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|++.|.|....
T Consensus 85 L~~eDtAvYYCAr~~ 99 (117)
T d1um5h1 85 LTSEDSAVYYCARSS 99 (117)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cCCCcceEEEEeecc
Confidence 999999999997543
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.41 E-value=0.00039 Score=56.64 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=51.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+.+|++++|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+
T Consensus 6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~ 85 (120)
T d1pg7x1 6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR 85 (120)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence 334556889999999999965444456789988 23321 1 1 235555433 3566899999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|++.|.|....
T Consensus 86 l~~eDtA~YYCAr~~ 100 (120)
T d1pg7x1 86 LTSNDSAVYYCARED 100 (120)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCcceEEEeeecC
Confidence 999999999998653
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.40 E-value=0.00025 Score=57.32 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=48.2
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
....+.+|++++|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ .....|.|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~ 87 (115)
T d1f3dh1 8 GPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT 87 (115)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC
Confidence 3456888999999999965444455688988 23221 1 1 134555433 345679999999
Q ss_pred CCCcEEEEEEE
Q psy2145 250 PEDSGVYTCRA 260 (808)
Q Consensus 250 ~~D~G~Y~C~a 260 (808)
.+|++.|.|..
T Consensus 88 ~eDtAvYYCAr 98 (115)
T d1f3dh1 88 FEDSAVYYCAN 98 (115)
T ss_dssp GGGCEEEEEEE
T ss_pred cCCcEEEEEec
Confidence 99999999953
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.40 E-value=0.00034 Score=56.47 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=50.3
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------cC-----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------KS-----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+.+|++++|.|.+++.......+.|+| .|+.+ .. ..|+.+..+ .....|.|.+
T Consensus 6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~ 85 (117)
T d1mfah1 6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS 85 (117)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence 445667889999999999975444556788987 23211 10 124444433 3456799999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|..
T Consensus 86 L~~eDtAvYYCAr 98 (117)
T d1mfah1 86 LTSEDSAVYYCTR 98 (117)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEec
Confidence 9999999999964
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00019 Score=56.90 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE--EE-eeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR--PI-HDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~--~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
++.++|.|.+.++......|+|++||+.+..+.... .. .++.........+..++...|+|++.+..
T Consensus 15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~ 84 (95)
T d1k5na1 15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEG 84 (95)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECc
Confidence 567999999999766678999999999887643221 11 22222233333344556678999998753
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.40 E-value=0.00014 Score=58.55 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=45.0
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecCcce
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGFA 134 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 134 (808)
..++.++|.|.+.++......|.|.++|........-....++.. ..|.|..-.. +.|.|+|+|.+.....
T Consensus 18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~ 91 (101)
T d1kcvh2 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST 91 (101)
T ss_dssp TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence 467899999999986455679999988854321111111222221 3566654443 4689999999875543
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.40 E-value=0.00011 Score=58.25 Aligned_cols=68 Identities=12% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc--EEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR--FRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
+++.++|.|.+.++......|+|++||..+..... .....++.+.......+..+|...|+|++.+..
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s 84 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS 84 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence 45789999999986444569999999987754321 122233333222333334456778999998864
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.40 E-value=0.00042 Score=54.69 Aligned_cols=79 Identities=10% Similarity=0.215 Sum_probs=48.4
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceE---EEecCc-eEEEEEccCCCCCcEEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFT---ETNNFG-FVALDIMQCLPEDSGVYTC 258 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~---~~~~~~-~~~L~I~~~~~~D~G~Y~C 258 (808)
||.+.+.... ..++.++|.|.+.+.......|+|++||..+..+.... ..+.++ +.......+..+|...|+|
T Consensus 3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC 79 (94)
T d1hyrc1 3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTC 79 (94)
T ss_dssp CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEE
T ss_pred CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEE
Confidence 5666553322 23567899999987666678999999999887543221 112222 2222222333445557999
Q ss_pred EEEeCc
Q psy2145 259 RAVNAL 264 (808)
Q Consensus 259 ~a~n~~ 264 (808)
++.+..
T Consensus 80 ~V~H~~ 85 (94)
T d1hyrc1 80 YMEHSG 85 (94)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 998853
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.39 E-value=0.00053 Score=55.19 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=51.4
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------cC----------CCceEEEec--CceEEEEEccCCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------KS----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
....+.+|++++|.|.+++.......+.|+| .|+.+ .. ..|+.+..+ .....|.|.+++.
T Consensus 8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~ 87 (116)
T d7fabh1 8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA 87 (116)
T ss_dssp CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence 3456889999999999976555667889988 23211 11 235555433 3456899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|++.|.|....
T Consensus 88 eDtAvYyCAr~~ 99 (116)
T d7fabh1 88 ADTAVYYCARNL 99 (116)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEEeeeec
Confidence 999999997654
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.39 E-value=0.00053 Score=56.47 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=51.9
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEeeC--CeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHDF--GYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~~--~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.--...+.|+| .|+- |. . ..|+.+..|. ..+.|.|.+++.+|
T Consensus 10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD 89 (133)
T d1rzfh1 10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD 89 (133)
T ss_dssp EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence 6899999999999997544555788987 2221 11 1 2578887764 56789999999999
Q ss_pred CeeEEEEEEe
Q psy2145 120 SGTYTCRAVN 129 (808)
Q Consensus 120 ~G~Y~C~a~n 129 (808)
++.|.|....
T Consensus 90 tA~YYCAr~~ 99 (133)
T d1rzfh1 90 TAVYYCASNS 99 (133)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEeeecc
Confidence 9999996643
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.39 E-value=0.0001 Score=59.65 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=50.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------ec----------cCcEEEEeeC--CeEEEEEcccCcCCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------TI----------GHRFRPIHDF--GYVALDIIDTIPEDS 120 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~r~~~~~~~--~~~~L~I~~~~~~D~ 120 (808)
.+++|++++|+|.+.++.-....+.|+| .|+.+ .. ..|+.+..|. ..+.|.|.+++.+|+
T Consensus 11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT 90 (116)
T d1fn4b1 11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT 90 (116)
T ss_dssp BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence 5789999999999997544556788998 33221 11 2466666653 557899999999999
Q ss_pred eeEEEEEEe
Q psy2145 121 GTYTCRAVN 129 (808)
Q Consensus 121 G~Y~C~a~n 129 (808)
+.|.|....
T Consensus 91 AvYyCAr~~ 99 (116)
T d1fn4b1 91 GTYYCTRDL 99 (116)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999996543
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.38 E-value=0.00026 Score=57.04 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=48.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.....+..|++++|.|.+.+.......+.|+| .|+- |. . ..|+.+..+ ...+.|.|.++
T Consensus 7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L 86 (118)
T d1nlbh1 7 SGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeec
Confidence 33456889999999999965444455688988 2321 11 1 235555543 35567999999
Q ss_pred CCCCcEEEEEE
Q psy2145 249 LPEDSGVYTCR 259 (808)
Q Consensus 249 ~~~D~G~Y~C~ 259 (808)
+.+|++.|.|.
T Consensus 87 ~~eDtAvYYCA 97 (118)
T d1nlbh1 87 KNEDTATYFCA 97 (118)
T ss_dssp CGGGCEEEEEE
T ss_pred ccCcceEEEEe
Confidence 99999999994
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.38 E-value=0.00046 Score=55.54 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=50.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.-...+.+|+++.|.|.+++.......+.|+| .|+. |. . ..|+.+..+ .....|.|.++
T Consensus 7 sG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L 86 (117)
T d1jnhb1 7 SGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSL 86 (117)
T ss_dssp CCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeeccccc
Confidence 33456789999999999976556667889988 2221 11 1 235555544 35567999999
Q ss_pred CCCCcEEEEEEE
Q psy2145 249 LPEDSGVYTCRA 260 (808)
Q Consensus 249 ~~~D~G~Y~C~a 260 (808)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAr 98 (117)
T d1jnhb1 87 TSEDSAVYSCSR 98 (117)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEEee
Confidence 999999999965
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.38 E-value=0.00034 Score=56.25 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------cC----------CCceEEEec--CceEEEEEccCCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------KS----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
-...+.+|++++|.|.+.+.......+.|+| .|+.+ .. ..|+.+..+ ...+.|.|.+++.
T Consensus 8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~ 87 (117)
T d1c5db1 8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT 87 (117)
T ss_dssp CCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc
Confidence 3456889999999999965444456788988 23322 11 235555543 3456899999999
Q ss_pred CCcEEEEEEE
Q psy2145 251 EDSGVYTCRA 260 (808)
Q Consensus 251 ~D~G~Y~C~a 260 (808)
+|++.|.|..
T Consensus 88 eDtAvYYCAr 97 (117)
T d1c5db1 88 EDTAIYFCTR 97 (117)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEec
Confidence 9999999964
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00023 Score=55.69 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=55.9
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEE-eeCCEEc-cCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCceeEE
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEW-FHNNVPI-KSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNALGQAV 268 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W-~~~g~~l-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 268 (808)
+-+.+.+|+++.+.|.+ ..|...++- ..++..+ +.+..+......| ++|.++...|.|.|.|.|... |...
T Consensus 13 ~~V~v~eg~~~vIPC~v---T~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~G---f~I~~~~~~~~g~y~C~a~~~-g~~~ 85 (95)
T d1fltx_ 13 EIIHMTEGRELVIPCRV---TSPNITVTLKKFPLDTLIPDGKRIIWDSRKG---FIISNATYKEIGLLTCEATVN-GHLY 85 (95)
T ss_dssp EEEEECTTSCEEECCCB---SCTTSCCEEEETTTEEECCCSSSEEEETTTE---EEESSCCGGGCEEEEEEEEET-TEEE
T ss_pred CEEEEeCCCCEEEEccC---CCCCceeEEEeccCCccCCCCCEEEECCCCC---EEEeCCCcccCeEEEEEEEEC-CEEE
Confidence 34678999999999998 567766654 4466655 4555555555555 679999999999999999875 5555
Q ss_pred EEEEEEE
Q psy2145 269 TSGNLLV 275 (808)
Q Consensus 269 ~~~~l~V 275 (808)
.+..|..
T Consensus 86 ~S~yl~~ 92 (95)
T d1fltx_ 86 KTNYLTH 92 (95)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5545543
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.37 E-value=0.00021 Score=56.66 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCce-E---EEEEccCCCCCcEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFGF-V---ALDIMQCLPEDSGVYT 257 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~-~---~L~I~~~~~~D~G~Y~ 257 (808)
+|.+.+...+ ...++.++|.|.+.+.......|.|++||..+...... .....+|. . .|.|. .+|...|+
T Consensus 3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~yt 77 (96)
T d2h26a1 3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLS 77 (96)
T ss_dssp CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEE
T ss_pred CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEE
Confidence 4444443322 23567899999998755556799999999987543211 12223332 2 35554 45556899
Q ss_pred EEEEeC
Q psy2145 258 CRAVNA 263 (808)
Q Consensus 258 C~a~n~ 263 (808)
|++.+.
T Consensus 78 C~V~H~ 83 (96)
T d2h26a1 78 CRVKHS 83 (96)
T ss_dssp EEEEEG
T ss_pred EEEEeC
Confidence 999885
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.37 E-value=0.00042 Score=56.22 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=50.9
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.....+.+|++++|.|.+++......-+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+
T Consensus 7 ~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~ 86 (122)
T d1vgeh1 7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (122)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence 344567899999999999964434456789988 2221 11 1 235555443 3456799999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 248 CLPEDSGVYTCRAV 261 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~ 261 (808)
++.+|++.|.|...
T Consensus 87 L~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 87 LRPEDTAVYYCARD 100 (122)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEEeec
Confidence 99999999999764
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.36 E-value=0.00047 Score=57.27 Aligned_cols=69 Identities=20% Similarity=0.434 Sum_probs=49.7
Q ss_pred ccCCCCcEEEEEEEeeCC--CCCceEEEEe--CCEEe---e-------------ccCcEEEEeeC--CeEEEEEcccCcC
Q psy2145 61 NLRERGHAHFECKLEPVT--DSNLKVEWFK--NGRPV---T-------------IGHRFRPIHDF--GYVALDIIDTIPE 118 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~--~p~~~v~W~~--~g~~l---~-------------~~~r~~~~~~~--~~~~L~I~~~~~~ 118 (808)
.+++|++++|.|.+.++. .....+.|+| .|+.+ . ...|+.+..|. ..+.|.|.+++.+
T Consensus 11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e 90 (132)
T d1tjgh1 11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV 90 (132)
T ss_dssp EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence 578999999999998632 2334688997 22211 0 12577776654 4578999999999
Q ss_pred CCeeEEEEEEe
Q psy2145 119 DSGTYTCRAVN 129 (808)
Q Consensus 119 D~G~Y~C~a~n 129 (808)
|++.|.|....
T Consensus 91 DtAvYYCAr~~ 101 (132)
T d1tjgh1 91 DTATYFCAHRR 101 (132)
T ss_dssp GCEEEEEEEEC
T ss_pred cceEEEEEEec
Confidence 99999997653
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.35 E-value=0.00033 Score=56.33 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=50.2
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------cc-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IK-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
-...+.+|+++.|.|.+++.......+.|+|. |+. |. . ..|+.+..+ .....|.|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~ 87 (117)
T d1jpth1 8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence 45678899999999999754444667899882 221 11 1 234444433 355679999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|++.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (117)
T d1jpth1 88 AEDTAVYYCARDT 100 (117)
T ss_dssp GGGCEEEEEEEEC
T ss_pred CCCceEEEEeecC
Confidence 9999999996543
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.35 E-value=0.0004 Score=56.33 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=48.9
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------cC----------CCceEEEec--CceEEEEEccCCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------KS----------GSRFTETNN--FGFVALDIMQCLPE 251 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~~~ 251 (808)
...+.+|++++|.|.+++.......+.|+|. |+.+ .. ..|+.+..+ .....|.|.+++.+
T Consensus 9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e 88 (120)
T d1dn0b1 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (120)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence 4568899999999999754455567889882 3221 11 235665543 34567999999999
Q ss_pred CcEEEEEE
Q psy2145 252 DSGVYTCR 259 (808)
Q Consensus 252 D~G~Y~C~ 259 (808)
|++.|.|.
T Consensus 89 DtA~YYCA 96 (120)
T d1dn0b1 89 DTAVYYCA 96 (120)
T ss_dssp GCEEEEEE
T ss_pred cccEEEEE
Confidence 99999994
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.35 E-value=0.00033 Score=55.61 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=50.3
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------ccC-------------CCceEEEec--CceEEEEEcc
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IKS-------------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~~-------------~~~~~~~~~--~~~~~L~I~~ 247 (808)
-...+.+|++++|.|.+++......-+.|+| .|+. |.. ..|+.+..+ ...+.|.|.+
T Consensus 8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s 87 (109)
T d2ck0h1 8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN 87 (109)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence 4566889999999999975444556788988 2221 110 125555544 3557899999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 248 CLPEDSGVYTCRAV 261 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~ 261 (808)
++.+|++.|.|...
T Consensus 88 L~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 88 LKTEDTGIYYCVRG 101 (109)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCHhHCEEEEEEEc
Confidence 99999999999753
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.34 E-value=0.00032 Score=57.20 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=48.0
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------cC-----------CCceEEEe--cCceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------KS-----------GSRFTETN--NFGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~~-----------~~~~~~~~--~~~~~~L~I~~~~ 249 (808)
....+.+|++|+|.|.+.+.......+.|+| .|+.+ .. ..|+.+.. ......|.|.+++
T Consensus 8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~ 87 (119)
T d1qnzh_ 8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT 87 (119)
T ss_dssp CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence 3456889999999999964333445689988 23221 11 13555543 2345679999999
Q ss_pred CCCcEEEEEEE
Q psy2145 250 PEDSGVYTCRA 260 (808)
Q Consensus 250 ~~D~G~Y~C~a 260 (808)
.+|++.|.|..
T Consensus 88 ~eDsAvYYCA~ 98 (119)
T d1qnzh_ 88 SDDSAVYYCAI 98 (119)
T ss_dssp GGGCEEEEEEE
T ss_pred ccceeEEEEEE
Confidence 99999999954
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.34 E-value=0.00028 Score=55.78 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=43.9
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE----EEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF----RPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~----~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
++.++|.|.+.++-.+...|+|++||..+..+... ....++.........+..+|...|+|++.+.
T Consensus 15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~ 84 (94)
T d1hyrc1 15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS 84 (94)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence 46789999999865567799999999988754322 1112223323333344455666899999875
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.34 E-value=0.00027 Score=58.28 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=51.0
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------e---c----------cCcEEEEeeC--CeEEEEEcccCc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------T---I----------GHRFRPIHDF--GYVALDIIDTIP 117 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~---~----------~~r~~~~~~~--~~~~L~I~~~~~ 117 (808)
.+++|++++|.|.+.++......+.|+| .|+.+ . . ..|+.+..|. ..+.|.|.+++.
T Consensus 11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~ 90 (131)
T d3c2ah1 11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT 90 (131)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence 5789999999999997544455788987 22211 1 0 2477777663 567899999999
Q ss_pred CCCeeEEEEEE
Q psy2145 118 EDSGTYTCRAV 128 (808)
Q Consensus 118 ~D~G~Y~C~a~ 128 (808)
+|++.|.|...
T Consensus 91 eDTAvYYCAR~ 101 (131)
T d3c2ah1 91 EDTAVYSCTTD 101 (131)
T ss_dssp GGCEEEEEEEE
T ss_pred CCceEEEEecc
Confidence 99999999864
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.32 E-value=0.00038 Score=55.98 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=50.3
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------cC----------CCceEEEe--cCceEEEEEccCCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------KS----------GSRFTETN--NFGFVALDIMQCLPE 251 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~~~~~~~--~~~~~~L~I~~~~~~ 251 (808)
...+.+|++++|.|.+++.......+.|+|. |+.+ .. ..|+.+.. ......|.|.+++.+
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e 88 (116)
T d1a2yb_ 9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD 88 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence 4567899999999999765555678899882 2221 11 12444443 334567999999999
Q ss_pred CcEEEEEEEEe
Q psy2145 252 DSGVYTCRAVN 262 (808)
Q Consensus 252 D~G~Y~C~a~n 262 (808)
|++.|.|....
T Consensus 89 DTAvYYCAr~~ 99 (116)
T d1a2yb_ 89 DTARYYCARER 99 (116)
T ss_dssp GCEEEEEEEES
T ss_pred cceEEEEEEeC
Confidence 99999997543
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.32 E-value=0.00035 Score=55.94 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=50.8
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+.+|+++.|.|.+++.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s 85 (116)
T d1mjuh1 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (116)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence 444567889999999999975445556788988 2221 11 1 125555433 3556899999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|..
T Consensus 86 L~~eDtAvYYCAr 98 (116)
T d1mjuh1 86 LTSDDSAVYYCAN 98 (116)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCCceEEEEcc
Confidence 9999999999964
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.32 E-value=0.00053 Score=55.33 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=51.4
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
-...+.+|+++.|.|.+.+.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+++
T Consensus 8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~ 87 (118)
T d2fbjh1 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC
Confidence 3456889999999999975544555788987 2321 11 1 234555443 345679999999
Q ss_pred CCCcEEEEEEEEeCc
Q psy2145 250 PEDSGVYTCRAVNAL 264 (808)
Q Consensus 250 ~~D~G~Y~C~a~n~~ 264 (808)
.+|++.|.|......
T Consensus 88 ~eDtAvYYCAr~~~~ 102 (118)
T d2fbjh1 88 SEDTALYYCARLHYY 102 (118)
T ss_dssp GGGCEEEEEEEEETT
T ss_pred CCcceEEEeeEecCC
Confidence 999999999875543
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.31 E-value=0.00015 Score=58.73 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=50.4
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEEe------e---c----------cCcEEEEee--CCeEEEEEcccCc
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRPV------T---I----------GHRFRPIHD--FGYVALDIIDTIP 117 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~l------~---~----------~~r~~~~~~--~~~~~L~I~~~~~ 117 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+.+ . . ..|+.+..| ...+.|.|.+++.
T Consensus 11 ~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~ 90 (121)
T d1nfdf1 11 LVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRV 90 (121)
T ss_dssp EECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCG
T ss_pred eECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCC
Confidence 6899999999999997544555788998 33221 1 1 236666655 4567899999999
Q ss_pred CCCeeEEEEEE
Q psy2145 118 EDSGTYTCRAV 128 (808)
Q Consensus 118 ~D~G~Y~C~a~ 128 (808)
+|++.|.|...
T Consensus 91 eDTAvYYCAr~ 101 (121)
T d1nfdf1 91 DDTAIYYCTRA 101 (121)
T ss_dssp GGCEECEEEEE
T ss_pred CcceEEEEecc
Confidence 99999999754
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.30 E-value=0.00032 Score=57.61 Aligned_cols=72 Identities=11% Similarity=0.234 Sum_probs=48.1
Q ss_pred cCCCCccccCCCCcEEEEEEEeeCCCCCceEEEEeC--CEEee---c-------------cCcEEEEeeCCeEEEEEccc
Q psy2145 54 TKPKSIENLRERGHAHFECKLEPVTDSNLKVEWFKN--GRPVT---I-------------GHRFRPIHDFGYVALDIIDT 115 (808)
Q Consensus 54 ~~p~~~~~v~~G~~v~l~C~~~~~~~p~~~v~W~~~--g~~l~---~-------------~~r~~~~~~~~~~~L~I~~~ 115 (808)
..|..+ .+.+|++++|.|.... .....+.|||. |+.+. . ..++....... ..|.|..+
T Consensus 6 Q~P~~~-~~~~G~~vtL~C~~~~--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~~l~l~~~ 81 (112)
T d1fo0b_ 6 QNPRWR-LVPRGQAVNLRCILKN--SQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD-TELRLQVA 81 (112)
T ss_dssp EECSEE-ECCTTCCEEEEEEESC--TTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEET-TEEEEEEE
T ss_pred eCCCeE-EECCCCCEEEEEEEec--CCCCcEEEEeECCCCCccccceeccccccccccccccccccccccc-cEEEEecC
Confidence 446666 8999999999999874 33357899982 32211 0 12333322222 26888888
Q ss_pred CcCCCeeEEEEEEe
Q psy2145 116 IPEDSGTYTCRAVN 129 (808)
Q Consensus 116 ~~~D~G~Y~C~a~n 129 (808)
..+|++.|.|.+..
T Consensus 82 ~~~dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 82 NMSQGRTLYCTCSA 95 (112)
T ss_dssp SCCSCEEEEEEEES
T ss_pred CccCCccEEEEEec
Confidence 99999999999753
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.29 E-value=0.00035 Score=57.19 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=49.4
Q ss_pred ccCCCCcEEEEEEEeeCCCC-CceEEEEe--CCEEe------ec----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDS-NLKVEWFK--NGRPV------TI----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p-~~~v~W~~--~g~~l------~~----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-. ...+.|+| .|+.+ .. ..|+.+..| ...+.|.|.+++.+|
T Consensus 11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD 90 (127)
T d3cx5j1 11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED 90 (127)
T ss_dssp EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence 57899999999999964332 24688998 34332 11 136666654 355789999999999
Q ss_pred CeeEEEEEE
Q psy2145 120 SGTYTCRAV 128 (808)
Q Consensus 120 ~G~Y~C~a~ 128 (808)
++.|.|...
T Consensus 91 tAvYyCAr~ 99 (127)
T d3cx5j1 91 TATYYCARS 99 (127)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEeeee
Confidence 999999754
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.29 E-value=0.00045 Score=56.32 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=50.3
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.....+.+|++++|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~ 85 (121)
T d1j05b_ 6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS 85 (121)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence 344566889999999999965444456789988 23221 1 1 125555432 3456799999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 248 CLPEDSGVYTCRAV 261 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~ 261 (808)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (121)
T d1j05b_ 86 LTSEDTAVYYCAPF 99 (121)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcCcceEEEeEee
Confidence 99999999999754
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.29 E-value=0.00041 Score=55.51 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=49.3
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
....+.+|++++|.|.+.+.......+.|+| .|+- |. . ..|+.+..+ .....|.|.+++
T Consensus 8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~ 87 (114)
T d1indh1 8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR 87 (114)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec
Confidence 3456889999999999975444556788988 2221 11 1 135555543 355679999999
Q ss_pred CCCcEEEEEEE
Q psy2145 250 PEDSGVYTCRA 260 (808)
Q Consensus 250 ~~D~G~Y~C~a 260 (808)
.+|++.|.|..
T Consensus 88 ~eDtAvYYCA~ 98 (114)
T d1indh1 88 SEDTALYFCAS 98 (114)
T ss_dssp GGGCEEEEEEC
T ss_pred cCcccEEEECC
Confidence 99999999964
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.28 E-value=0.0007 Score=55.22 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=51.8
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.....+.+|+++.|.|.+.+.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+
T Consensus 5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~ 84 (126)
T d1lmka1 5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS 84 (126)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence 344567889999999999976556677889988 2221 11 1 235555433 4567899999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|..
T Consensus 85 L~~eDTAvYYCAr 97 (126)
T d1lmka1 85 LTSEDSAVYYCAR 97 (126)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEee
Confidence 9999999999964
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.28 E-value=0.0007 Score=55.57 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=51.7
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c--C---------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K--S---------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~--~---------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.....+.+|+++.|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+
T Consensus 5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~ 84 (130)
T d1rhhb1 5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN 84 (130)
T ss_dssp ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence 444567889999999999965444556789988 23211 1 1 135555543 3556899999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|++.|.|....
T Consensus 85 L~~eDtAvYyCAr~~ 99 (130)
T d1rhhb1 85 LRSDDTAVYYCARDF 99 (130)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred cCCCCcEEEEEEeec
Confidence 999999999997653
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00023 Score=57.41 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE---EEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF---RPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~---~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++.++|.|.+.++......|.|++||..+..+... ....++.+ ..|.|....-.....|+|.+.+..
T Consensus 19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1rzfl2 19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 92 (102)
T ss_dssp HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 467799999999865556799999999988754221 11222332 245554443333557999999863
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.28 E-value=0.00055 Score=55.40 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=50.3
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------cc--C---------CCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IK--S---------GSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~--~---------~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.....+.+|+++.|.|.+.+.......+.|+|. |+. |. . ..|+.+..+ .....|.|.++
T Consensus 7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL 86 (119)
T d1rz7h1 7 SGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL 86 (119)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeecc
Confidence 344567899999999999765555567899882 221 11 1 135555443 35567999999
Q ss_pred CCCCcEEEEEEEE
Q psy2145 249 LPEDSGVYTCRAV 261 (808)
Q Consensus 249 ~~~D~G~Y~C~a~ 261 (808)
+.+|++.|.|...
T Consensus 87 ~~eDTAvYYCAr~ 99 (119)
T d1rz7h1 87 RSEDTAVYYCAAD 99 (119)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CcccceEEEEeec
Confidence 9999999999653
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.27 E-value=0.00041 Score=55.94 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=49.6
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+.+|+++.|.|.+.+.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~s 85 (118)
T d2jelh1 6 QSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELAR 85 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccc
Confidence 344567889999999999965444455789988 2321 11 1 124444433 3556799999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (118)
T d2jelh1 86 LTSEDSAIYYCAR 98 (118)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cccCcceeeeEEE
Confidence 9999999999953
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.27 E-value=0.00055 Score=55.20 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=49.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------ccC-----------CCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IKS-----------GSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.....+.+|+++.|.|.+++.......+.|+| .|+- |.. ..|+.+..+ ...+.|.|.++
T Consensus 7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L 86 (118)
T d1ct8b1 7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL 86 (118)
T ss_dssp CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc
Confidence 34567889999999999976555566788988 2321 111 124444332 35568999999
Q ss_pred CCCCcEEEEEEEE
Q psy2145 249 LPEDSGVYTCRAV 261 (808)
Q Consensus 249 ~~~D~G~Y~C~a~ 261 (808)
+.+|++.|.|...
T Consensus 87 ~~eDtAvYYCAr~ 99 (118)
T d1ct8b1 87 TTEDSAIYYCARY 99 (118)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEeee
Confidence 9999999999653
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.26 E-value=0.00021 Score=57.49 Aligned_cols=84 Identities=10% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCCeEE-eecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCce---EEEEEccCCCCCcEEEE
Q psy2145 182 QAPIFT-TSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGF---VALDIMQCLPEDSGVYT 257 (808)
Q Consensus 182 ~~P~~~-~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~ 257 (808)
.+|.+. ..+... ...++.++|.|.+.+.......|.|.+++.............++.+ ..|.|..-... .+.|+
T Consensus 4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~yt 81 (102)
T d1mjuh2 4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP-SQSIT 81 (102)
T ss_dssp BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT-TSCCE
T ss_pred cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcC-CceEE
Confidence 355554 344333 3467899999999875555789999887754211000011222221 24777766653 56899
Q ss_pred EEEEeCceeE
Q psy2145 258 CRAVNALGQA 267 (808)
Q Consensus 258 C~a~n~~g~~ 267 (808)
|+|.+..+..
T Consensus 82 C~V~H~~~~~ 91 (102)
T d1mjuh2 82 CNVAHPASST 91 (102)
T ss_dssp EEEEEGGGTE
T ss_pred EEEEECCCCE
Confidence 9999865543
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.26 E-value=0.00047 Score=56.60 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=50.3
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.....+.+|++++|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s 85 (125)
T d1rihh1 6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS 85 (125)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence 344566889999999999965444445688887 23211 1 1 135555443 3556799999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 248 CLPEDSGVYTCRAV 261 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~ 261 (808)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAR~ 99 (125)
T d1rihh1 86 LTSEDSAVYYCARE 99 (125)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcccceEEEEeee
Confidence 99999999999754
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.25 E-value=0.00029 Score=56.76 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCc-e---EEEEEccCCCCCcEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFG-F---VALDIMQCLPEDSGVYT 257 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~-~---~~L~I~~~~~~D~G~Y~ 257 (808)
+|.+.+.+.......++.++|.|.+.+.......|+|++||......... .....+| + ..|.|..-.......|+
T Consensus 4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~yt 83 (102)
T d1igtb4 4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYS 83 (102)
T ss_dssp CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEE
T ss_pred CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEE
Confidence 45554433333333578899999997654556899999999875432111 1112222 2 24666554444456899
Q ss_pred EEEEeC
Q psy2145 258 CRAVNA 263 (808)
Q Consensus 258 C~a~n~ 263 (808)
|+|.+.
T Consensus 84 C~V~H~ 89 (102)
T d1igtb4 84 CSVVHE 89 (102)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999884
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.25 E-value=0.00016 Score=58.14 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=44.2
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCce----EEEEEccCCCCCcEEEEEEEEeC
Q psy2145 197 EGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFGF----VALDIMQCLPEDSGVYTCRAVNA 263 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 263 (808)
..+.++|.|.+.+.......|.|++||.++...... .....+|. ..|.|..-.......|+|+|.+.
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 88 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 88 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 467899999998654457899999999987542211 12222332 24666554444566899999885
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.25 E-value=0.0014 Score=53.11 Aligned_cols=69 Identities=23% Similarity=0.416 Sum_probs=50.7
Q ss_pred CCccccCCceEEEEEEEeeCCCC----CeEEEEEEC--CEEc------cC----------CCcEEEEEe--CCEEEEEEc
Q psy2145 644 GTSEIMEGQSAHYDCRVVPVGDP----TMRFEWFVN--GVEL------KM----------GSRFHVQHD--FGYVTLDIT 699 (808)
Q Consensus 644 ~~~~v~~G~~v~l~C~v~~~g~P----~p~i~W~~~--g~~l------~~----------~~~~~~~~~--~~~~~L~I~ 699 (808)
++..+++|++++|.|.+ .|.. .--+.|++- |+.| .. .+|+.+..| .....|+|.
T Consensus 8 G~~~vkPg~sl~LsC~~--SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~ 85 (120)
T d1ai1h1 8 GPAVIKPSQSLSLTCIV--SGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLI 85 (120)
T ss_dssp CCSEECSSSCEEEEEEE--ESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEES
T ss_pred CCceECCCCCEEEEEEE--cccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeeccee
Confidence 34568889999999999 5643 346889872 3222 11 157888876 446889999
Q ss_pred cCCCCCcEEEEEEEE
Q psy2145 700 KCVPADSGVYMCKAI 714 (808)
Q Consensus 700 ~v~~~D~G~Y~C~A~ 714 (808)
+++++|++.|.|...
T Consensus 86 sL~~eDtAvYYCAr~ 100 (120)
T d1ai1h1 86 SVTNEDTAMYYCSRE 100 (120)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred eeeccceeEEEEEec
Confidence 999999999999754
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.25 E-value=0.0012 Score=53.34 Aligned_cols=72 Identities=18% Similarity=0.361 Sum_probs=51.0
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------cC-------------CCceEEEec--CceEEEEEcc
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------KS-------------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~~-------------~~~~~~~~~--~~~~~L~I~~ 247 (808)
-...+.+|++++|.|.+++.......+.|+| .|+.+ .. ..|+.+..+ .....|.|.+
T Consensus 8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~ 87 (120)
T d1dlfh_ 8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNT 87 (120)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceee
Confidence 3456789999999999976555667889998 33321 10 125555443 3556899999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|++.|.|....
T Consensus 88 L~~eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 88 LRAEDTGIYYCTGIY 102 (120)
T ss_dssp CCGGGCEEEEEEEEB
T ss_pred ccCCCceEEEeeEec
Confidence 999999999996543
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.25 E-value=0.00028 Score=59.46 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=50.8
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC----------------CcEEEEEeCCEEEEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMG----------------SRFHVQHDFGYVTLDI 698 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~----------------~~~~~~~~~~~~~L~I 698 (808)
+|.+....+....+..+..++|.|.+...-.....|.|++||+.+..+ ..|.+ .+.|.|
T Consensus 4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~-----sS~L~v 78 (127)
T d1ogae2 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSL-----SSRLRV 78 (127)
T ss_dssp CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEE-----EEEEEE
T ss_pred CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEE-----EEEEEE
Confidence 466655554444566688899999996433336699999999988642 12222 246777
Q ss_pred ccCCCCCcE-EEEEEEEeC
Q psy2145 699 TKCVPADSG-VYMCKAINR 716 (808)
Q Consensus 699 ~~v~~~D~G-~Y~C~A~N~ 716 (808)
..-.-.+.| .|+|.+.-.
T Consensus 79 ~~~~W~~~g~~ytC~V~H~ 97 (127)
T d1ogae2 79 SATFWQNPRNHFRCQVQFY 97 (127)
T ss_dssp EHHHHTCTTCEEEEEEEEC
T ss_pred CHHHhCCCCCEEEEEEEEC
Confidence 655545666 699998754
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.24 E-value=0.00052 Score=56.35 Aligned_cols=74 Identities=12% Similarity=0.270 Sum_probs=48.4
Q ss_pred EEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEcc-------C---------CCceEEEecCceEEEEEcc
Q psy2145 186 FTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPIK-------S---------GSRFTETNNFGFVALDIMQ 247 (808)
Q Consensus 186 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l~-------~---------~~~~~~~~~~~~~~L~I~~ 247 (808)
+...|..+.+.+|++|+|.|... ......+.|||. |+.+. . ..++....... ..|.|..
T Consensus 4 V~Q~P~~~~~~~G~~vtL~C~~~--~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~~l~l~~ 80 (112)
T d1fo0b_ 4 LEQNPRWRLVPRGQAVNLRCILK--NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD-TELRLQV 80 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEES--CTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEET-TEEEEEE
T ss_pred EEeCCCeEEECCCCCEEEEEEEe--cCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccc-cEEEEec
Confidence 45567778899999999999984 334457999993 33211 1 11222221111 2588888
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
+..+|++.|.|-+.-
T Consensus 81 ~~~~dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 81 ANMSQGRTLYCTCSA 95 (112)
T ss_dssp ESCCSCEEEEEEEES
T ss_pred CCccCCccEEEEEec
Confidence 889999999998753
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.24 E-value=0.00011 Score=59.23 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=49.7
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEe--CCEE------ee-c----------cCcEEEEee--CCeEEEEEcccCcCC
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFK--NGRP------VT-I----------GHRFRPIHD--FGYVALDIIDTIPED 119 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~r~~~~~~--~~~~~L~I~~~~~~D 119 (808)
.+++|+++.|.|.+.++.-....+.|+| .|+. |. . ..|+.+..| ...+.|.|.+++.+|
T Consensus 11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD 90 (117)
T d1b2wh1 11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED 90 (117)
T ss_dssp EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc
Confidence 6799999999999986433445778987 2221 21 1 147888765 356789999999999
Q ss_pred CeeEEEEE
Q psy2145 120 SGTYTCRA 127 (808)
Q Consensus 120 ~G~Y~C~a 127 (808)
++.|.|..
T Consensus 91 TAvYYCAr 98 (117)
T d1b2wh1 91 TAVYYCAR 98 (117)
T ss_dssp CEEEECCE
T ss_pred ceEEEEcc
Confidence 99999964
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.24 E-value=0.0003 Score=54.23 Aligned_cols=63 Identities=10% Similarity=0.134 Sum_probs=45.2
Q ss_pred CcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCeEEEEEcccCcCCCeeEEEEEEec
Q psy2145 66 GHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNL 130 (808)
Q Consensus 66 ~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 130 (808)
+.++|.|.+.++..+...|.|.+||..+..........++.+..+.+..... ...|+|++.+.
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~--~~~yTC~V~H~ 76 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYED--SNSVTCSVQHD 76 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETT--TTTCEEEEEET
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCC--CCEEEEEEEEC
Confidence 4568999999876667799999999987765444444555555555555544 44699999875
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.23 E-value=0.00046 Score=55.79 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=49.5
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------ccC-----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IKS-----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~~-----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
+.-...+.+|+++.|.|.+.+.......+.|+|. |+. |.. ..|+.+..+ ...+.|.|.+
T Consensus 6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s 85 (119)
T d1eapb1 6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS 85 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence 3345667899999999999654444567889882 221 111 125555433 3456799999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (119)
T d1eapb1 86 LTSEDSAVYFCKR 98 (119)
T ss_dssp CCGGGCEEEEEEE
T ss_pred ccCCcceEEEEEE
Confidence 9999999999954
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.23 E-value=0.00094 Score=54.61 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=51.8
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-----------CCCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-----------SGSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-----------~~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.-...+.+|+++.|.|.+++.......+.|+| .|+-+ . -..|+.+..+ ...+.|.|.++
T Consensus 7 sG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL 86 (128)
T d2nxyd1 7 SGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNL 86 (128)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeec
Confidence 33456889999999999976555566788987 22211 1 1235555544 35678999999
Q ss_pred CCCCcEEEEEEEEe
Q psy2145 249 LPEDSGVYTCRAVN 262 (808)
Q Consensus 249 ~~~D~G~Y~C~a~n 262 (808)
+.+|++.|.|....
T Consensus 87 ~~eDTA~YYCAr~~ 100 (128)
T d2nxyd1 87 RSDDTAVYFCAGVY 100 (128)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred cccCceEEEEeEEe
Confidence 99999999999754
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.22 E-value=0.00077 Score=55.04 Aligned_cols=70 Identities=21% Similarity=0.445 Sum_probs=50.6
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------ccC-----------CCceEEEec--CceEEEEEccCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IKS-----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~~-----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
...+.+|+++.|.|.+++.......+.|+|. |+. |.. ..|+.+..+ ...+.|.|.+++.
T Consensus 8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~ 87 (124)
T d1zvya1 8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS 87 (124)
T ss_dssp CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence 4568899999999999765666678899982 221 111 134555443 3556799999999
Q ss_pred CCcEEEEEEEE
Q psy2145 251 EDSGVYTCRAV 261 (808)
Q Consensus 251 ~D~G~Y~C~a~ 261 (808)
+|++.|.|...
T Consensus 88 eDtAvYYCAr~ 98 (124)
T d1zvya1 88 EDTAIYTCGAT 98 (124)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEEeec
Confidence 99999999764
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.21 E-value=0.00067 Score=54.92 Aligned_cols=69 Identities=22% Similarity=0.405 Sum_probs=49.8
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------cc-C----------CCceEEEec--CceEEEEEccCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IK-S----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
...+.+|++++|.|.+++.......+.|+|. |+. |. . ..|+.+..+ ...+.|.|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~ 88 (121)
T d2p49b1 9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP 88 (121)
T ss_dssp CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence 4567899999999999765556677899882 221 11 1 125555544 3456799999999
Q ss_pred CCcEEEEEEE
Q psy2145 251 EDSGVYTCRA 260 (808)
Q Consensus 251 ~D~G~Y~C~a 260 (808)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (121)
T d2p49b1 89 EDTATYYCAA 98 (121)
T ss_dssp GGCEEEEEEE
T ss_pred cceeEEeeec
Confidence 9999999975
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.19 E-value=0.00095 Score=54.71 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=50.4
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEecC--ceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNNF--GFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~~--~~~~L~I~~~~ 249 (808)
-...+.+|+++.|.|.+++.......+.|+| .|+. |. . ..|+.+..+. ....|.|.+++
T Consensus 8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~ 87 (135)
T d1ieha_ 8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK 87 (135)
T ss_dssp CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC
T ss_pred CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC
Confidence 3456889999999999975444556788987 2221 11 1 1355555442 44679999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|++.|.|....
T Consensus 88 ~eDTAvYYCAr~~ 100 (135)
T d1ieha_ 88 SEDTAVYYCAKYS 100 (135)
T ss_dssp SSSCEEEEEEEBS
T ss_pred cccceeeEEEEec
Confidence 9999999997643
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.18 E-value=0.00043 Score=56.19 Aligned_cols=85 Identities=13% Similarity=0.172 Sum_probs=51.9
Q ss_pred CCeEEeecCCCccccCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE--EEEeCCEEEEEEccCCCCCcE-EEEE
Q psy2145 635 KPIFTQLLTGTSEIMEGQSAHYDCRVVPVGDPTMRFEWFVNGVELKMGSRFH--VQHDFGYVTLDITKCVPADSG-VYMC 711 (808)
Q Consensus 635 ~P~~~~~~~~~~~v~~G~~v~l~C~v~~~g~P~p~i~W~~~g~~l~~~~~~~--~~~~~~~~~L~I~~v~~~D~G-~Y~C 711 (808)
+|.....++....+..+..++|.|.+.........|.|++||..+..+.... ...++.+.......+..+|-| .|+|
T Consensus 8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC 87 (107)
T d1hxmb2 8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRC 87 (107)
T ss_dssp SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEE
T ss_pred CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEE
Confidence 3554444455556777889999999964333356999999998876542221 122333433333344444433 6999
Q ss_pred EEEeCCcc
Q psy2145 712 KAINRAGE 719 (808)
Q Consensus 712 ~A~N~~G~ 719 (808)
.+.-..+.
T Consensus 88 ~V~H~s~~ 95 (107)
T d1hxmb2 88 IVRHENNK 95 (107)
T ss_dssp EEEETTSG
T ss_pred EEEECCCC
Confidence 99876443
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.18 E-value=0.00048 Score=55.93 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEE----EeeCCe---EEEEEcccCcCCCeeEEEEEEecCcc
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRP----IHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGF 133 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~----~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~ 133 (808)
.++.++|.|.+.++......|+|++||..+..+..... ..++.+ ..|.|..-.-.....|+|.|.+....
T Consensus 19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~ 95 (107)
T d1mjul2 19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 95 (107)
T ss_dssp TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence 46789999999985445579999999998865421111 112222 24555554433456799999986443
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.17 E-value=0.0006 Score=55.63 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=50.4
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+..|+++.|.|.+++......-+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~ 85 (127)
T d1n0xh1 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence 445567889999999999975444455788988 2322 11 1 134555543 3456799999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|.-
T Consensus 86 L~~eDtAvYYCAR 98 (127)
T d1n0xh1 86 LRSADTAVYYCAR 98 (127)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCCceEEEEEe
Confidence 9999999999963
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.17 E-value=0.00022 Score=60.19 Aligned_cols=71 Identities=17% Similarity=0.353 Sum_probs=47.2
Q ss_pred ccCCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEE----E----EeeCCe---EEEEEcccCcCCCe-eEEEEEE
Q psy2145 61 NLRERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFR----P----IHDFGY---VALDIIDTIPEDSG-TYTCRAV 128 (808)
Q Consensus 61 ~v~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~----~----~~~~~~---~~L~I~~~~~~D~G-~Y~C~a~ 128 (808)
.+..+..++|.|.+.++......|+|++||+.+..+.... . ..++.+ ..|.|....-.+.| .|+|++.
T Consensus 16 e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~ 95 (127)
T d1ogae2 16 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ 95 (127)
T ss_dssp HHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred HhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEE
Confidence 4556788999999998655567999999999886431110 0 011111 35777665555666 6999998
Q ss_pred ecC
Q psy2145 129 NLV 131 (808)
Q Consensus 129 n~~ 131 (808)
+..
T Consensus 96 H~~ 98 (127)
T d1ogae2 96 FYG 98 (127)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.17 E-value=0.0012 Score=53.93 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=50.7
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
....+..|+++.|.|.+++......-+.|+| .|+-+ . . ..|+.+..+ ...+.|.|.+++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~ 87 (127)
T d2fx7h1 8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLR 87 (127)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccC
Confidence 3456788999999999976555566788987 23211 1 1 235555543 355689999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|++.|.|....
T Consensus 88 ~eDTavYYCAR~~ 100 (127)
T d2fx7h1 88 PEDTAVYYCAREG 100 (127)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cccceEEEEeecc
Confidence 9999999998653
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.16 E-value=0.00063 Score=53.81 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=41.8
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEccCCCCCcEE
Q psy2145 197 EGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQCLPEDSGV 255 (808)
Q Consensus 197 ~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~~~~~D~G~ 255 (808)
+|++++|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 4899999999965444456789997 23322 1 1 245555543 345679999999999999
Q ss_pred EEEEEEeC
Q psy2145 256 YTCRAVNA 263 (808)
Q Consensus 256 Y~C~a~n~ 263 (808)
|.|.....
T Consensus 81 YYCAr~~~ 88 (103)
T d1oari_ 81 YYCARMWY 88 (103)
T ss_dssp EEEEEEEC
T ss_pred EEeEEECC
Confidence 99976543
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.16 E-value=0.00052 Score=55.76 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=49.5
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
-...+.+|+++.|.|.+++.......+.|+| .|+. |. . ..|+.+..+ .....|.|.+++
T Consensus 8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~ 87 (123)
T d1mqkh_ 8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK 87 (123)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec
Confidence 3456889999999999965444455688988 2321 11 1 124555433 345679999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|++.|.|....
T Consensus 88 ~eDtAvYYCAr~~ 100 (123)
T d1mqkh_ 88 SEDTAMYYCVRHE 100 (123)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cCcccceeEEecC
Confidence 9999999997654
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00042 Score=56.31 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEE---ecCce----EEEEEccCCCCCcE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTET---NNFGF----VALDIMQCLPEDSG 254 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~---~~~~~----~~L~I~~~~~~D~G 254 (808)
.+|.+.+.+.......++.++|.|.+.+.......|+|++||..+..+...... ..+|. ..|.|..-......
T Consensus 4 ~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~ 83 (107)
T d1c5cl2 4 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK 83 (107)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred cCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCC
Confidence 356555543332323467899999998654445799999999987654322211 12232 25677665545555
Q ss_pred EEEEEEEeCce
Q psy2145 255 VYTCRAVNALG 265 (808)
Q Consensus 255 ~Y~C~a~n~~g 265 (808)
.|+|+|.+...
T Consensus 84 ~ytC~V~H~~~ 94 (107)
T d1c5cl2 84 VYACEVTHQGL 94 (107)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEECCC
Confidence 89999998543
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.14 E-value=0.0008 Score=54.26 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=50.3
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.....+..|+++.|.|.+.+.......+.|+| .|+.| . . ..|+.+..+ ...+.|.|.++
T Consensus 7 sg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L 86 (120)
T d1ad9b1 7 SGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSL 86 (120)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccccc
Confidence 34556889999999999975445556788988 22211 1 1 134444433 35678999999
Q ss_pred CCCCcEEEEEEEE
Q psy2145 249 LPEDSGVYTCRAV 261 (808)
Q Consensus 249 ~~~D~G~Y~C~a~ 261 (808)
+.+|++.|.|...
T Consensus 87 ~~eDTAvYYCAr~ 99 (120)
T d1ad9b1 87 RSEDTAFYFCARE 99 (120)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCcceEEEEEEc
Confidence 9999999999753
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.14 E-value=0.00042 Score=55.75 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=49.7
Q ss_pred CCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCce----EEEEEccCCCCCcEEEE
Q psy2145 183 APIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFGF----VALDIMQCLPEDSGVYT 257 (808)
Q Consensus 183 ~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~----~~L~I~~~~~~D~G~Y~ 257 (808)
+|.+.+.+........+.++|.|.+.+.......|+|++||.++...... .....+|. ..|.|..-.......|+
T Consensus 4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~yt 83 (102)
T d1i1ca2 4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFT 83 (102)
T ss_dssp CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEE
Confidence 45444433332232457899999998755556899999999987532111 11222232 23666665555566899
Q ss_pred EEEEeC
Q psy2145 258 CRAVNA 263 (808)
Q Consensus 258 C~a~n~ 263 (808)
|+|.+.
T Consensus 84 C~V~H~ 89 (102)
T d1i1ca2 84 CSVLHE 89 (102)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999884
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.14 E-value=0.00097 Score=53.66 Aligned_cols=72 Identities=18% Similarity=0.361 Sum_probs=50.8
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------cC----------CCceEEEec--CceEEEEEccCCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------KS----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
....+.+|+++.|.|.+++.......+.|+|. |+.+ .. ..|+.+..+ ...+.|.|.+++.
T Consensus 8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~ 87 (118)
T d1lo4h1 8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS 87 (118)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence 34567899999999999766666678899882 2221 11 124444433 3456899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|++.|.|....
T Consensus 88 eDtA~YyCAr~~ 99 (118)
T d1lo4h1 88 EDTAIYYCARGT 99 (118)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcceEEEecccC
Confidence 999999997543
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=97.14 E-value=0.00028 Score=56.05 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeec----cC---cEEEEeeCCeEEEEEcccCcCCCeeEEEEEEecC
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTI----GH---RFRPIHDFGYVALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~----~~---r~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
...++|.|.+.++-.....|+|++||..+.. +. ......++.+.......+..++...|+|.+.+..
T Consensus 14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s 87 (98)
T d1u58a1 14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIA 87 (98)
T ss_dssp SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGG
T ss_pred CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 4578999999997566789999999876542 11 1122233333333333445556678999998754
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.14 E-value=0.001 Score=54.24 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=49.6
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
...+.+|+++.|.|.+++.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+++.
T Consensus 9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~ 88 (126)
T d1dfbh1 9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA 88 (126)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence 456889999999999965444455788988 2221 11 1 234555443 3556899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|++.|.|....
T Consensus 89 eDtavYYCAr~~ 100 (126)
T d1dfbh1 89 EDMALYYCVKGR 100 (126)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcceEEEEEecc
Confidence 999999997543
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00044 Score=55.62 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCeEEe-ecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCce----EEEEEccCCCCCcEEE
Q psy2145 183 APIFTT-SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFGF----VALDIMQCLPEDSGVY 256 (808)
Q Consensus 183 ~P~~~~-~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~----~~L~I~~~~~~D~G~Y 256 (808)
+|.+.+ .|....+ .++.++|.|.+.+.......|+|++||......... .....+|. ..|.|..-.....-.|
T Consensus 4 ~P~V~i~~ps~~~~-~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~y 82 (102)
T d1l6xa2 4 EPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF 82 (102)
T ss_dssp CCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred CCEEEEECcCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEE
Confidence 454443 3333323 577899999998755556899999999986542111 12222332 2466665444445589
Q ss_pred EEEEEeC
Q psy2145 257 TCRAVNA 263 (808)
Q Consensus 257 ~C~a~n~ 263 (808)
+|+|.+.
T Consensus 83 tC~V~H~ 89 (102)
T d1l6xa2 83 SCSVMHE 89 (102)
T ss_dssp EEEEECT
T ss_pred EEEEEeC
Confidence 9999985
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00097 Score=53.75 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=49.9
Q ss_pred CCeE-EeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce--EEEecCce---EEEEEccCCCC--CcE
Q psy2145 183 APIF-TTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF--TETNNFGF---VALDIMQCLPE--DSG 254 (808)
Q Consensus 183 ~P~~-~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~--~~~~~~~~---~~L~I~~~~~~--D~G 254 (808)
+|.+ ...+........+.++|.|.+.+.......|+|.++|..+...... ....++.+ ..|.|..-... ...
T Consensus 5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~ 84 (105)
T d1dn0b2 5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDE 84 (105)
T ss_dssp CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCC
T ss_pred CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCC
Confidence 4444 4444444555678899999998655556899999999876542111 11222222 24666655443 223
Q ss_pred EEEEEEEeCceeEEEE
Q psy2145 255 VYTCRAVNALGQAVTS 270 (808)
Q Consensus 255 ~Y~C~a~n~~g~~~~~ 270 (808)
.|+|+|.+..+.....
T Consensus 85 ~ytC~V~H~~~~~~~~ 100 (105)
T d1dn0b2 85 HVVCKVQHPNGNKEKN 100 (105)
T ss_dssp EEEEEEECTTCCEEEE
T ss_pred EEEEEEEECCCCEEeE
Confidence 7999999976654443
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.11 E-value=0.00068 Score=55.08 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=48.6
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
...+.+|+++.|.|.+.+.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~ 88 (121)
T d1ol0a_ 9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA 88 (121)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence 456789999999999965333445688987 2222 11 1 135555543 3556899999999
Q ss_pred CCcEEEEEEEE
Q psy2145 251 EDSGVYTCRAV 261 (808)
Q Consensus 251 ~D~G~Y~C~a~ 261 (808)
+|++.|.|...
T Consensus 89 eDtAvYYCAr~ 99 (121)
T d1ol0a_ 89 EDTAVYYCARE 99 (121)
T ss_dssp GGCEEEEEEEC
T ss_pred ccceEEEEEEe
Confidence 99999999654
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.10 E-value=0.0013 Score=53.02 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=48.8
Q ss_pred CceeecCCCeEEEEEEEeecCCC-CeEEEEee--CCEEc------cC----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDN-TMKVEWFH--NNVPI------KS----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~~--~g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
....+.+|+++.|.|.+.+.... ...+.|+| .|+-+ .. ..|+.+..+ ...+.|.|.+++
T Consensus 8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~ 87 (119)
T d1ncwh1 8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT 87 (119)
T ss_dssp SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence 34568899999999999653332 35678988 33321 11 234555443 355689999999
Q ss_pred CCCcEEEEEEEE
Q psy2145 250 PEDSGVYTCRAV 261 (808)
Q Consensus 250 ~~D~G~Y~C~a~ 261 (808)
.+|++.|.|...
T Consensus 88 ~eDTAvYYCAr~ 99 (119)
T d1ncwh1 88 TEDTATYYCAGL 99 (119)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCceEEEEeEe
Confidence 999999999643
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.10 E-value=0.00037 Score=56.00 Aligned_cols=71 Identities=8% Similarity=0.130 Sum_probs=41.3
Q ss_pred CCCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcEEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecCcce
Q psy2145 63 RERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRFRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLVGFA 134 (808)
Q Consensus 63 ~~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 134 (808)
..++.++|.|.+.++......|+|.+++........-....++.. ..|.|....- +.+.|+|+|.+..+..
T Consensus 18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~ 91 (102)
T d1mjuh2 18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST 91 (102)
T ss_dssp ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence 467899999999986555679999887743211000011222222 2466665544 3678999999876543
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.10 E-value=0.00074 Score=54.97 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=49.1
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------ccC-----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IKS-----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+..|+++.|.|.+++.......+.|+| .|+. |.. ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~ 85 (124)
T d2b1hh1 6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS 85 (124)
T ss_dssp ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence 344567889999999999965333345678888 2221 111 235555443 3457899999
Q ss_pred CCCCCcEEEEEEE
Q psy2145 248 CLPEDSGVYTCRA 260 (808)
Q Consensus 248 ~~~~D~G~Y~C~a 260 (808)
++.+|++.|.|..
T Consensus 86 L~~eDTA~YYCAR 98 (124)
T d2b1hh1 86 LKPSDTALYYCAR 98 (124)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cccccceEEEEee
Confidence 9999999999954
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.09 E-value=0.002 Score=52.95 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=51.0
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-----------CCCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-----------SGSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-----------~~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
-...+.+|+++.|.|.+++.......+.|+| .|+- |. -..|+.+..+ .....|.|.+++
T Consensus 7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~ 86 (133)
T d1rzfh1 7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR 86 (133)
T ss_dssp CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence 3456889999999999965445566788988 2221 11 1245555544 356789999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|++.|.|....
T Consensus 87 ~eDtA~YYCAr~~ 99 (133)
T d1rzfh1 87 SDDTAVYYCASNS 99 (133)
T ss_dssp GGGCEEEEEEEEE
T ss_pred CCCCEEEEeeecc
Confidence 9999999996543
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.09 E-value=0.00026 Score=56.11 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=44.2
Q ss_pred eecCCCeEEEEEEEeecCCCCeEEEEeeC--CEEc------cC----------CCceEEEec--CceEEEEEccCCCCCc
Q psy2145 194 EIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVPI------KS----------GSRFTETNN--FGFVALDIMQCLPEDS 253 (808)
Q Consensus 194 ~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~l------~~----------~~~~~~~~~--~~~~~L~I~~~~~~D~ 253 (808)
.+.+|++++|.|.+++.......+.|+|. |+.+ .. ..|+.+..+ ...+.|.|.+++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 36789999999998643344556789882 2211 11 135555543 3456799999999999
Q ss_pred EEEEEEE
Q psy2145 254 GVYTCRA 260 (808)
Q Consensus 254 G~Y~C~a 260 (808)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999964
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.06 E-value=0.0011 Score=53.96 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=49.1
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE------cc-C----------CCceEEEec--CceEEEEEccCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP------IK-S----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
...+.+|+++.|.|.+++.......+.|+|. |+- |. . ..|+.+..+ ...+.|.|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~ 88 (122)
T d1bz7b1 9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS 88 (122)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence 4557889999999999754444567889882 221 11 1 134555433 3556799999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|++.|.|...+
T Consensus 89 eDTAvYYCAr~~ 100 (122)
T d1bz7b1 89 EDTAIYYCTRGG 100 (122)
T ss_dssp GGCEEEEEEEEC
T ss_pred cCceEEEeecCC
Confidence 999999997543
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.06 E-value=0.0012 Score=53.82 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=50.0
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEccCCC
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQCLP 250 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~~~~ 250 (808)
...+.+|++++|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+++.
T Consensus 9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~ 88 (125)
T d1op3h1 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (125)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence 456789999999999975444456788988 22211 1 1 135555543 3567899999999
Q ss_pred CCcEEEEEEEEe
Q psy2145 251 EDSGVYTCRAVN 262 (808)
Q Consensus 251 ~D~G~Y~C~a~n 262 (808)
+|++.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (125)
T d1op3h1 89 EDTAIYYCARKG 100 (125)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceeEeEeecc
Confidence 999999997643
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.06 E-value=0.00089 Score=54.26 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=49.9
Q ss_pred cCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------ccC-----------CCceEEEec--CceEEEEEccC
Q psy2145 190 LKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IKS-----------GSRFTETNN--FGFVALDIMQC 248 (808)
Q Consensus 190 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~~-----------~~~~~~~~~--~~~~~L~I~~~ 248 (808)
.-...+.+|+++.|.|.+++.......+.|+| .|+- |.. ..|+.+..+ ...+.|.|.++
T Consensus 7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL 86 (124)
T d1yedb1 7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSL 86 (124)
T ss_dssp CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESC
T ss_pred eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccccc
Confidence 34556889999999999975444456788988 2221 111 135555444 35678999999
Q ss_pred CCCCcEEEEEEE
Q psy2145 249 LPEDSGVYTCRA 260 (808)
Q Consensus 249 ~~~D~G~Y~C~a 260 (808)
+.+|++.|.|..
T Consensus 87 ~~eDTAvYYCAR 98 (124)
T d1yedb1 87 KSEDSAVYFCTR 98 (124)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCcceEEEecc
Confidence 999999999975
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.05 E-value=0.00039 Score=55.92 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE--EEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF--RPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~--~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++.++|.|.+.++......|+|++||......... ....++.+ ..|.|..-.-.....|+|++.+..
T Consensus 18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 578899999999864556799999999875432111 11122222 246555443334567999998753
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.03 E-value=3.9e-05 Score=62.36 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCCeEEeecCceeecCCCeEEEEEEEeecCCCCeEEEEeeCCEEccCCCce-EEEecCce-E---EEEEccCCCCCcEEE
Q psy2145 182 QAPIFTTSLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRF-TETNNFGF-V---ALDIMQCLPEDSGVY 256 (808)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~-~---~L~I~~~~~~D~G~Y 256 (808)
.+|.+.+.+....-..+..++|.|.+.+.......|.|++||..+...... .....++. . .|.|..-...+...|
T Consensus 4 ~~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~y 83 (104)
T d1nfde2 4 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRV 83 (104)
T ss_dssp BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred cCCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEE
Confidence 456665543322222467799999997654446799999999988643221 11222332 2 244444444556689
Q ss_pred EEEEEeCce
Q psy2145 257 TCRAVNALG 265 (808)
Q Consensus 257 ~C~a~n~~g 265 (808)
+|+|.+...
T Consensus 84 tC~V~H~~~ 92 (104)
T d1nfde2 84 SCQVTHEGE 92 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEEEECCC
Confidence 999998643
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.02 E-value=0.0008 Score=55.39 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=49.7
Q ss_pred ceeecCCCeEEEEEEEeecCCCCeEEEEeeC--CEE---c---c------C----------CCceEEEec--CceEEEEE
Q psy2145 192 NCEIKEGQRAHFECRLIPVSDNTMKVEWFHN--NVP---I---K------S----------GSRFTETNN--FGFVALDI 245 (808)
Q Consensus 192 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~~--g~~---l---~------~----------~~~~~~~~~--~~~~~L~I 245 (808)
...+.+|++++|.|.+++.......+.|+|. |+. | . . ..|+.+..+ ...+.|.|
T Consensus 9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i 88 (127)
T d1i3ua_ 9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM 88 (127)
T ss_dssp CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence 4567899999999999654445567899982 221 1 0 0 125555432 35568999
Q ss_pred ccCCCCCcEEEEEEEEe
Q psy2145 246 MQCLPEDSGVYTCRAVN 262 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~n 262 (808)
.+++.+|++.|.|....
T Consensus 89 ~~l~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 89 NSLKPEDTAVYYCAAKT 105 (127)
T ss_dssp CSCCGGGCEEEEEEEES
T ss_pred ecccccceeEEEEEEEe
Confidence 99999999999998653
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.02 E-value=0.00086 Score=51.55 Aligned_cols=64 Identities=6% Similarity=0.108 Sum_probs=45.1
Q ss_pred CeEEEEEEEeecCCCCeEEEEeeCCEEccCCCceEEEecCceEEEEEccCCCCCcEEEEEEEEeCc
Q psy2145 199 QRAHFECRLIPVSDNTMKVEWFHNNVPIKSGSRFTETNNFGFVALDIMQCLPEDSGVYTCRAVNAL 264 (808)
Q Consensus 199 ~~v~L~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 264 (808)
+.++|.|.+.+.-.+...|.|.+||..+..........++.+..+.+......| .|+|+|.+..
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~--~yTC~V~H~~ 77 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSN--SVTCSVQHDN 77 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTT--TCEEEEEETT
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCC--EEEEEEEECC
Confidence 456899999876556789999999998876554444444445455555554444 6999999864
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.01 E-value=0.0012 Score=54.01 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=49.9
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEE------cc-C----------CCceEEEec--CceEEEEEccCC
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVP------IK-S----------GSRFTETNN--FGFVALDIMQCL 249 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~I~~~~ 249 (808)
-...+.+|++++|.|.+++.......+.|+| .|+. |. . ..|+.+..+ ...+.|.|.+++
T Consensus 8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~ 87 (127)
T d2fb4h1 8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLR 87 (127)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeee
Confidence 3456789999999999975444456788988 2221 11 1 134555443 355689999999
Q ss_pred CCCcEEEEEEEEe
Q psy2145 250 PEDSGVYTCRAVN 262 (808)
Q Consensus 250 ~~D~G~Y~C~a~n 262 (808)
.+|++.|.|....
T Consensus 88 ~eDTA~YYCAr~~ 100 (127)
T d2fb4h1 88 PEDTGVYFCARDG 100 (127)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ecceeEEEEEEec
Confidence 9999999997643
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.01 E-value=0.00069 Score=55.60 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=50.2
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c-C----------CCceEEEec--CceEEEEEcc
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K-S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~-~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
++....+.+|++++|.|.+++.......+.|+| .|+-+ . . ..|+.+..+ ...+.|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s 85 (130)
T d1rzga1 6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS 85 (130)
T ss_dssp ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence 334556889999999999965444456788988 23211 1 1 124445443 3456799999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 248 CLPEDSGVYTCRAV 261 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~ 261 (808)
++.+|++.|.|...
T Consensus 86 L~~eDtA~YYCAr~ 99 (130)
T d1rzga1 86 LRSEDTAVFYCASP 99 (130)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred cCCCccEEEEEEEe
Confidence 99999999999853
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.01 E-value=0.0011 Score=53.67 Aligned_cols=72 Identities=17% Similarity=0.323 Sum_probs=49.9
Q ss_pred CceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c---C----------CCceEEEec--CceEEEEEcc
Q psy2145 191 KNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K---S----------GSRFTETNN--FGFVALDIMQ 247 (808)
Q Consensus 191 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~---~----------~~~~~~~~~--~~~~~L~I~~ 247 (808)
-...+.+|+++.|.|.+.+.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|.+
T Consensus 8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s 87 (122)
T d1q9rb1 8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT 87 (122)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence 3456889999999999975444455688997 23211 1 0 134555433 3456799999
Q ss_pred CCCCCcEEEEEEEEe
Q psy2145 248 CLPEDSGVYTCRAVN 262 (808)
Q Consensus 248 ~~~~D~G~Y~C~a~n 262 (808)
++.+|++.|.|....
T Consensus 88 L~~eDTAvYYCar~~ 102 (122)
T d1q9rb1 88 LRAEDSATYYCARDH 102 (122)
T ss_dssp CCGGGCEEEEEEECC
T ss_pred eccCcceEEEEEecC
Confidence 999999999998643
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.00062 Score=54.56 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=44.3
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc--EEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR--FRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r--~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
..+.++|.|.+.++......|+|++||..+..... .....++.+ ..|.|..-.-.....|+|++.+..
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~ 89 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG 89 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence 46789999999986455679999999998754221 112223322 245555443344567999998763
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00049 Score=55.35 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=44.1
Q ss_pred CCCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCc--EEEEeeCCe---EEEEEcccCcCCCeeEEEEEEecC
Q psy2145 64 ERGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHR--FRPIHDFGY---VALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 64 ~G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r--~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.++.++|.|.+.++......|+|++||........ .....++.+ ..|.|..-.......|+|++.+..
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~ 90 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 90 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence 47789999999986445679999999987653211 111122222 246665544344457999999864
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.98 E-value=0.0004 Score=55.86 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=44.3
Q ss_pred CCcEEEEEEEeeCCCCCceEEEEeCCEEeeccCcE--EEEeeCCeE---EEEEcccCcCCCeeEEEEEEecC
Q psy2145 65 RGHAHFECKLEPVTDSNLKVEWFKNGRPVTIGHRF--RPIHDFGYV---ALDIIDTIPEDSGTYTCRAVNLV 131 (808)
Q Consensus 65 G~~v~l~C~~~~~~~p~~~v~W~~~g~~l~~~~r~--~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~n~~ 131 (808)
.+.++|.|.+.++......|+|++||.++...... ....++... .|.|..........|+|+|.+..
T Consensus 19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~ 90 (102)
T d1i1ca2 19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG 90 (102)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence 56899999999865556899999999876532111 112223222 46666554455567999998853
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.98 E-value=0.00099 Score=53.81 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=50.5
Q ss_pred ecCceeecCCCeEEEEEEEeecCCCCeEEEEee--CCEEc------c---C----------CCceEEEec--CceEEEEE
Q psy2145 189 SLKNCEIKEGQRAHFECRLIPVSDNTMKVEWFH--NNVPI------K---S----------GSRFTETNN--FGFVALDI 245 (808)
Q Consensus 189 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~~--~g~~l------~---~----------~~~~~~~~~--~~~~~L~I 245 (808)
+.-...+.+|+++.|.|.+++.......+.|+| .|+.+ . . ..|+.+..+ ...+.|.|
T Consensus 6 eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~ 85 (121)
T d1nfdf1 6 ESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM 85 (121)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence 334567899999999999976555566788988 23221 1 1 113333332 34567999
Q ss_pred ccCCCCCcEEEEEEEE
Q psy2145 246 MQCLPEDSGVYTCRAV 261 (808)
Q Consensus 246 ~~~~~~D~G~Y~C~a~ 261 (808)
.+++.+|++.|.|...
T Consensus 86 ~~L~~eDTAvYYCAr~ 101 (121)
T d1nfdf1 86 NRLRVDDTAIYYCTRA 101 (121)
T ss_dssp ESCCGGGCEECEEEEE
T ss_pred cccCCCcceEEEEecc
Confidence 9999999999999754
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=96.98 E-value=0.0027 Score=52.17 Aligned_cols=68 Identities=26% Similarity=0.400 Sum_probs=49.3
Q ss_pred CccccCCceEEEEEEEeeCCC----CCeEEEEEE--CCEEc--------------cC--CCcEEEEEe--CCEEEEEEcc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGD----PTMRFEWFV--NGVEL--------------KM--GSRFHVQHD--FGYVTLDITK 700 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~----P~p~i~W~~--~g~~l--------------~~--~~~~~~~~~--~~~~~L~I~~ 700 (808)
...+.+|++++|.|.+ .|. ....+.|++ -|+.+ .+ .+|+.+..+ .....|+|.+
T Consensus 9 ~~lvkPg~sv~LsC~~--SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~ 86 (126)
T d1etzb1 9 PGILQPSQTLSLTCSF--SGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITS 86 (126)
T ss_dssp CSEECTTCCEEEEEEE--ESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CceECCCCCEEEEEEE--eCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceec
Confidence 3467889999999998 453 345678985 22211 11 247888776 3467899999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 701 CVPADSGVYMCKAI 714 (808)
Q Consensus 701 v~~~D~G~Y~C~A~ 714 (808)
++++|++.|.|...
T Consensus 87 l~~eDtAvYyCAr~ 100 (126)
T d1etzb1 87 VDTSDTATYHCARR 100 (126)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred ccccccceEEEEEe
Confidence 99999999999754
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=96.96 E-value=0.0017 Score=52.96 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=48.9
Q ss_pred CccccCCceEEEEEEEeeCCC----CCeEEEEEE--CCEEc------cC----------CCcEEEEEe--CCEEEEEEcc
Q psy2145 645 TSEIMEGQSAHYDCRVVPVGD----PTMRFEWFV--NGVEL------KM----------GSRFHVQHD--FGYVTLDITK 700 (808)
Q Consensus 645 ~~~v~~G~~v~l~C~v~~~g~----P~p~i~W~~--~g~~l------~~----------~~~~~~~~~--~~~~~L~I~~ 700 (808)
...+.+|++++|.|.+ .|. ...-+.|++ -|+.+ .. .+|+.+..| .....|+|.+
T Consensus 9 ~~~vkpg~sv~LsC~~--SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s 86 (123)
T d1r0ah1 9 PGIVQPSQPFRLTCTF--SGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT 86 (123)
T ss_dssp CSEECTTCCEEEEEEE--ESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred CceECCCCCeEEEEEE--cCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence 3567889999999998 453 234678986 23221 11 147777775 3457899999
Q ss_pred CCCCCcEEEEEEEE
Q psy2145 701 CVPADSGVYMCKAI 714 (808)
Q Consensus 701 v~~~D~G~Y~C~A~ 714 (808)
++++|++.|.|...
T Consensus 87 l~~eDsAvYyCAr~ 100 (123)
T d1r0ah1 87 VETADTAIYYCAQS 100 (123)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cccccceEEeeccc
Confidence 99999999999743
|