Psyllid ID: psy2160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770---
Protein Sequence
DRSKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLEEEDKKKKEAGKGSIDEKESKELQAPLTK
Secondary Structure (PSIPRED)
cccccEEEEccEEEEEccccccEEEEcccccccccccccccccccccEEccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccEEcccccccEEEEEEccccccccccEEEEEccccHHHHHHHHHcccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHccccEEEccccccEEEEEEEccccccccccEEEEccccHHHHHHHHHcccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEccHHHHHHHHHHHcccEEccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccEEEEEccccccEEEEccccccccccccccccccccccEccccccEEEEccccccccccccccccHHHcccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEcHccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEccccccccHHHHHHHHcccccEcEcccccccEEEEEEEcccccccccEEEEEccHHHHHHHHHHHccccccccEEEEEEEEEccccccccHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHEEEEEccccHHHHHHcHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEEccHHHHHHHHHHHcccEEcccEEEEEEEcccccEEEEccHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccHHccccHccccEEEEEcccccccHHHHHHHHHHcccEEEcccccccEEEEEEccccccccccEEEEEccHHHHHHHHHHHccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccHHHHHccHHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHcccEEccEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
drskyvhyegdvavytdpqsrqqytwdneknewKLRQIdyefdgsnyfykdktgtkykwdtasnswvpsvplvtsdkaadssdeeeydennaqktappiqrqdmskgsygyegdthtytdstdgtvyiwdkeknawfpkvddDFLARYQMSygfieqpntvdekkpsadlvQSKVeeksvdatapmenpkaeekvvpgqkrkpeppkwfdigeesTKVYVsnlpldltQEEFVEVMQKCGLvmkdvdtnqmkiklytdpytkdfkgdalCTYIKKESVDLALSILDGYEIRGKKIKVERAKFtmkgeaydpklkpkkKRKKDLEKLKKAQEKLFdwrpdkmrgerskneSVIIVKnlfdpalfdkDVTLILEYQQDLREEcskcghvkkvvlhdkhpegvaqiffkepeAADACRELLNgrwfgqrqitaetwdgktrYKIQETAEEREARLKKWETFLGKKIKVERAKFtmkgeaydpklkpkkKRKKDLEKLKKAQENTKVYVsnlpldltQEEFVEVMQKCGLvmkdvdtnqmkiklytdpytkdfkgdalCTYIKKESVDLALSILDGYEIRGKKIKVERAKFtmkgeaydpklkpkkKRKKDLEKLKKAQEKLFdwrpdkmrgerskneSVIIVKnlfdpalfdkDVTLILEYQQDLREEcskcghvkkvvlhdkhpegvaqiffkepeAADACRELLNgrwfgqrqitaetwdgktrYKIQETAEEREARLKKWETFLEEEDKKKkeagkgsidekeskelqapltk
Flexible Loop (DISEMBL)
drskyvhyegdvavytdpqsrqqytwdneknewklrQIDYEFDGSNYFYKDKTGTKYKwdtasnswvpsvplvTSDKAADSSDeeeydennaqktappiqrqdmSKGSYGYEGDthtytdstdgtvYIWDKEKNAWFPKVDDDFLARYQMSYGFieqpntvdekkpSADLVQSKVEEksvdatapmenpkaeekvvpgqkrkpeppkwfdigeeSTKVYVSNLPLDLTQEEFVEVMQKCGLvmkdvdtnqMKIKlytdpytkdfkGDALCTYIKKESVDLALSildgyeirgkkikverakftmkgeaydpklkpkkkrkkdleKLKKaqeklfdwrpdkmrgersknesviivknlfdpalfdkDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLngrwfgqrqitaetwdgktryKIQETAEEREARLkkwetflgkkikverakftmkgeaydpklkpkkkrkKDLEKlkkaqentkvyvsnlpldltQEEFVEVMQKCGLvmkdvdtnqMKIKlytdpytkdfkGDALCTYIKKESVDLALSildgyeirgkkikverakftmkgeaydpklkpkkkrkkdleKLKKaqeklfdwrpdkmrgersknesviivknlfdpalfdkDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLngrwfgqrqitaetwdgktrykIQETAEEREARLKKWETfleeedkkkkeagkgsidekeskelqapltk
Low Complexity Region (SEG)
DRSKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPLVTsdkaadssdeeeydennaQKTAPPIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPklkpkkkrkkdleklkkaqeklFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPklkpkkkrkkdleklkkAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPklkpkkkrkkdleklkkaqeklFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLeeedkkkkeAGKGSIDEKESKELQAPLTK
Disordered region (IsUnstruct)
****YVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVP*******************************************THTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIE***************************************************WFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF***********************************************SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA***EARLKKWETFLGKKIKVERAKF*******************************KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF***********************************************SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI***********************************************
Disordered Region (DISOPRED)
***KYVHYEGDVAVYTDPQSRQQYTWDNEKNEW*********DGSNYFYKDKTGTKYKWDTASNS************************************************DTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIE************************************************************KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK**************************************************KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQ*********LKKWETFLGKKIKVERAKFTM************************AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK****************************************************KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR**************************************************
Disordered Region (DISEMBL)
DRSKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPLVT*************************QRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAP*****************PEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLEE***************************
Disordered Region (DISPRO)
*RSKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPS****************EYDENNAQKTAPPIQRQ************THTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIE**************************************************KWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKK******************************KLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLEEE**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DRSKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLEEEDKKKKEAGKGSIDEKESKELQAPLTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	773	2.2.26 [Sep-21-2011]
Q8BGC0	757	HIV Tat-specific factor 1	yes	N/A	0.411	0.420	0.456	8e-72
Q5RB63	754	HIV Tat-specific factor 1	yes	N/A	0.407	0.417	0.448	4e-69
O43719	755	HIV Tat-specific factor 1	yes	N/A	0.413	0.423	0.443	5e-69
O43120	367	Splicing factor U2AF-asso	yes	N/A	0.386	0.814	0.312	3e-33
P53830	285	Cold sensitive U2 snRNA s	yes	N/A	0.297	0.807	0.315	6e-18
Q9ZR39	555	Splicing factor U2af larg	N/A	N/A	0.314	0.437	0.24	1e-08
Q9ZR40	573	Splicing factor U2af larg	N/A	N/A	0.250	0.338	0.268	2e-08
Q8L716	589	Splicing factor U2af larg	no	N/A	0.247	0.324	0.252	1e-07
Q8T6B9	637	Poly(U)-binding-splicing	no	N/A	0.112	0.136	0.355	5e-07
Q9WV25	564	Poly(U)-binding-splicing	no	N/A	0.108	0.148	0.295	2e-06

>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1 SV=1

 Score =  272 bits (695), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 151/331 (45%), Positives = 211/331 (63%), Gaps = 13/331 (3%)

Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
           G+ H+     D T Y WD +K AWFPK+ +DF+A YQ +YGF     + D    S   VQ
Sbjct: 37  GEAHSLGQPPDDTPYEWDLDKKAWFPKITEDFIATYQANYGF-----SSDGASSSTANVQ 91

Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
                K+V+     E P+  +    G+KRK E   WF + E+ +T VYVS LP D+T +E
Sbjct: 92  D-ANTKAVEEPPQKEVPETPDSKRKGEKRKAES-GWFHVEEDRNTNVYVSGLPPDITVDE 149

Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
           F+++M K G++M+D  T + K+KLY D    + KGD LC Y+KKESV+LAL +LD  EIR
Sbjct: 150 FIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLKKESVELALKLLDEDEIR 208

Query: 292 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRG-ERSKNES 350
           G K+ VE AKF +KGE YD   K KK +    +K    Q+K  DWRP++  G  R ++E 
Sbjct: 209 GYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSLQQKQLDWRPERRAGPNRLRHER 265

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
           V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE 
Sbjct: 266 VVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 325

Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKI 441
           AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 326 ADHCIQTLDGRWFGGRQITAQAWDGTTDYQV 356

Functions as a general transcription factor playing a role in the process of transcriptional elongation. May mediate the reciprocal stimulatory effect of splicing on transcriptional elongation.
Mus musculus (taxid: 10090)

>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2 SV=1

 Score =  263 bits (672), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 156/348 (44%), Positives = 214/348 (61%), Gaps = 33/348 (9%)

Query: 110 GYEGDTHTYTDS---------TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
           G +GDT T             TD T Y WD +K AWFPK+ +DF+A YQ +YGF      
Sbjct: 25  GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGF------ 77

Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENP--KAEEKVVP---GQKRKPEPPKWFDIGEE- 214
                  A    + VE+  V A    E P  KA E   P   G+KRK E   WF + E+ 
Sbjct: 78  ---SNDGASSSTANVED--VHARTAEEPPQEKAPEPTDPRKKGEKRKAES-GWFHVEEDR 131

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           +T VYVS LP D+T +EF+++M K G++M+D  T + K+KLY D    + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-NQGNLKGDGLCCYLK 190

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 334
           +ESV+LAL +LD  EIRG K+ VE AKF +KGE YD   K KK +    +K    Q+K  
Sbjct: 191 RESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSMQQKQL 247

Query: 335 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
           DWRP++  G  R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L 
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307

Query: 394 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 441
           D+HP+GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 308 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQV 355

Functions as a general transcription factor playing a role in the process of transcriptional elongation. May mediate the reciprocal stimulatory effect of splicing on transcriptional elongation.

Pongo abelii (taxid: 9601)

>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1

 Score =  263 bits (671), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/343 (44%), Positives = 215/343 (62%), Gaps = 23/343 (6%)

Query: 110 GYEGDTHTYTDS---------TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
           G +GDT T             TD T Y WD +K AWFPK+ +DF+A YQ +YGF    + 
Sbjct: 25  GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGF--SNDG 81

Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVY 219
                 + + V ++  E+     AP E   A +K   G+KRK E   WF + E+ +T VY
Sbjct: 82  ASSSTANVEDVHARTAEEPPQEKAP-EPTDARKK---GEKRKAES-GWFHVEEDRNTNVY 136

Query: 220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279
           VS LP D+T +EF+++M K G++M+D  T + K+KLY D    + KGD LC Y+K+ESV+
Sbjct: 137 VSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-NQGNLKGDGLCCYLKRESVE 195

Query: 280 LALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPD 339
           LAL +LD  EIRG K+ VE AKF +KGE YD   K KK +    +K    Q+K  DWRP+
Sbjct: 196 LALKLLDEDEIRGYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSMQQKQLDWRPE 252

Query: 340 KMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
           +  G  R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+
Sbjct: 253 RRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPD 312

Query: 399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 441
           GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 313 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQV 355

Functions as a general transcription factor playing a role in the process of transcriptional elongation. May mediate the reciprocal stimulatory effect of splicing on transcriptional elongation. In case of infection by HIV-1, it is up-regulated by the HIV-1 proteins NEF and gp120, acts as a cofactor required for the Tat-enhanced transcription of the virus.

Homo sapiens (taxid: 9606)

>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1

 Score =  144 bits (362), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 18/317 (5%)

Query: 444 TAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV 503
           TAE  E +    E+  G+    +R   +   E Y    + KK + ++ E       N  V
Sbjct: 57  TAEATEGK----ESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAV 112

Query: 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKES 562
           Y+  LPLD+T +E  EV +KCG++ K++D    +IK+Y T+  T   KGDAL  + + ES
Sbjct: 113 YIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTP--KGDALIVFFRSES 170

Query: 563 VDLALSILDGYEIR---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 619
           V+LA  + D  E R   G+K++V++A    K E    K      +KK L   ++  +++ 
Sbjct: 171 VELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQIS 230

Query: 620 DWRPDKMRG---ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV 676
            W           + +   ++++K++F     DK   L+++ + D+ EE  KCG V  VV
Sbjct: 231 SWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVV 290

Query: 677 LHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK-----IQETAE 731
           L+DK P+GV  + F   E A+AC  L+ GR+F  R + A  +DGK R++       +  E
Sbjct: 291 LYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEE 350

Query: 732 EREARLKKWETFLEEED 748
           + E RL+K+  +LE  +
Sbjct: 351 DEEKRLEKFADWLENSN 367

Has a role in pre-mRNA splicing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 27/257 (10%)

Query: 480 KLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKI 538
           +LK    +K++LE    A +NT +Y+S LP D  T+E   E   K G++  + D   +  
Sbjct: 25  QLKESNLQKRELE-YNNASKNTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGEPL-C 82

Query: 539 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF------TMKGE 592
           KLY +     FKGDAL TY K+ESV LA+ +++     GK+I+VERA+F       M G+
Sbjct: 83  KLYVNDKGA-FKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERAQFQNKEGDNMHGK 141

Query: 593 AYDPKLKPKKKRKKDLEKLKKAQE----KLFDWRPDKMRGERSKNESVIIVKNLFD--PA 646
             D  LK     +  +++LKKA+     ++ D+  D+     +K +  +I  N+F+   +
Sbjct: 142 END--LKEFNGPEPPIKRLKKAKSEGEGEVIDYNDDE---SLAKADRTVIFANVFNIYKS 196

Query: 647 LFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706
             + D+  I   Q+DL E C + G V  + +     +G A + FK  + A  C +++ GR
Sbjct: 197 YTNDDINDI---QEDLLEGCEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGR 251

Query: 707 WF-GQRQITAETWDGKT 722
           +F GQ+ +   + D  T
Sbjct: 252 YFDGQKLLAFISGDENT 268

U2 snRNP protein which helps to refold U2 into a structure favorable for its binding to SF3b and SF3a prior to spliceosome assembly. Mediates functional interactions between U2 RNA and PRP5. Enforces ATP dependence during formation of the prespliceosome by brokering an interaction between PRP5 and the U2 snRNP that depends on correct U2 RNA structure.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 57/300 (19%)

Query: 440 KIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 499
           +++   E   A       F G  +KV R         Y+P L       +    L  A  
Sbjct: 274 EMRSVEEASNAMALDGVIFEGGPVKVRRPS------DYNPSLAATLGPSQPSPNLNLAAV 327

Query: 500 NT------------KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK-IKLYTDPYT 546
            +            +++V  LP   T+ +  E+++  G         Q++   L  D  T
Sbjct: 328 GSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFG---------QLRGFDLVKDRET 378

Query: 547 KDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKK 606
            + KG A C Y      D+A + L+G ++  K + V RA    +G       +P  +++ 
Sbjct: 379 GNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRAN---QGTT-----QPNPEQES 430

Query: 607 DLEKLKKAQEKL----FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDL 662
               L  AQ+++    F  +P  +  +      V+ V  L D    D D   ILE   D+
Sbjct: 431 ---VLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELND----DDDYQDILE---DM 480

Query: 663 REECSKCGHVKKVVLHDKHPEGV-----AQIF--FKEPEAADACRELLNGRWFGQRQITA 715
           R EC K G +  VV+   +P GV      ++F  + + + +   R+ LNGR FG  Q+ A
Sbjct: 481 RTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVA 540

Necessary for the splicing of pre-mRNA. Binds to the U -enriched regions of plant introns.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 33/227 (14%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E   +++V  LP   T+ +  E+++  G  ++  D       L  D  T + KG A C Y
Sbjct: 356 EGPDRIFVGGLPYYFTEAQIRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVY 407

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK--AQ 330
                 D+A + L+G ++  K + V RA    +G       +PK +++  L   ++  A 
Sbjct: 408 QDVSVTDIACAALNGIKMGDKTLTVRRAN---QGTT-----QPKPEQESVLLHAQQQIAL 459

Query: 331 EKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV 390
           ++L   +P  +  +      VI    L D    D+D   ILE   D+R EC K G +  V
Sbjct: 460 QRLM-LQPATLATKVLSLTEVISADELND----DEDYQDILE---DMRTECGKFGSLVNV 511

Query: 391 VLHDKHPE-----GVAQIF--FKEPEAADACRELLNGRWFGQRQITA 430
           V+    P      GV ++F  + + +++   R+ LNGR FG  Q+ A
Sbjct: 512 VIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVA 558

Necessary for the splicing of pre-mRNA. Binds to the U -enriched regions of plant introns.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 39/230 (16%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E   +++V  LP   T+ +  E+++  G +            L  D  T + KG A C Y
Sbjct: 372 EGPDRIFVGGLPYYFTEVQIRELLESFGPLRG--------FNLVKDRETGNSKGYAFCVY 423

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
                 D+A + L+G ++  K + V RA   ++G      ++PK +++   E L  AQ++
Sbjct: 424 QDPSVTDIACAALNGIKMGDKTLTVRRA---IQG-----AIQPKPEQE---EVLLYAQQQ 472

Query: 333 L----FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK 388
           +      ++P     +      V+   +L D    D++   I+E   D+R+E  K G++ 
Sbjct: 473 IALQRLMFQPGGTPTKIVCLTQVVTADDLRD----DEEYAEIME---DMRQEGGKFGNLV 525

Query: 389 KVVL------HDKHPEGVAQIF--FKEPEAADACRELLNGRWFGQRQITA 430
            VV+      HD  P GV ++F  + + + +   R  +NGR FG  Q+ A
Sbjct: 526 NVVIPRPNPDHDPTP-GVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVA 574

Necessary for the splicing of pre-mRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)

Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-------- 393
           R  R  +  VII++N+  P   D D TL    Q++++EECSK G V +V++         
Sbjct: 529 RLMRPVDSRVIILRNMVGPE--DVDETL----QEEIQEECSKFGTVSRVIIFNEKQTENE 582

Query: 394 -DKHPEGVAQIFFKEPEAADACR--ELLNGRWFGQRQITAETWD 434
            D   E + +IF +    A+A R  E L+GR+FG R++ AE +D
Sbjct: 583 DDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYD 626

Splicing factor that regulates oogenesis and controls both mitosis and mRNA localization in the germline by regulating mRNA splicing of a subset of genes within the ovary. Probably acts by regulating the alternative splice site selection of the otu transcript. Also regulates the alternative splicing of eIF-4E and grk, while it is not involved in the splicing of par-1, sqd and psq.

Drosophila melanogaster (taxid: 7227)

>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 14/98 (14%)

Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
           R +  +V++++N+ DP   D D+      + ++ EEC K G V +V+++      ++  E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515

Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
            + +IF +   A++  + +  LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553

DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	773
156552643	583	PREDICTED: HIV Tat-specific factor 1 hom	0.557	0.739	0.525	1e-121
380027330	482	PREDICTED: HIV Tat-specific factor 1 hom	0.496	0.796	0.516	1e-110
194875554	554	GG13238 [Drosophila erecta] gi|190655403	0.557	0.777	0.494	1e-109
195495582	554	GE22336 [Drosophila yakuba] gi|194181430	0.557	0.777	0.494	1e-109
350418587	488	PREDICTED: HIV Tat-specific factor 1 hom	0.510	0.809	0.505	1e-109
321479438	460	hypothetical protein DAPPUDRAFT_299831 [	0.552	0.928	0.473	1e-108
195376801	541	GJ12075 [Drosophila virilis] gi|19415433	0.576	0.824	0.482	1e-107
198466675	601	GA19321 [Drosophila pseudoobscura pseudo	0.562	0.723	0.493	1e-107
158295648	665	AGAP006266-PA [Anopheles gambiae str. PE	0.575	0.669	0.474	1e-107
21357269	556	barricade, isoform A [Drosophila melanog	0.579	0.805	0.479	1e-107

>gi|156552643|ref|XP_001603250.1| PREDICTED: HIV Tat-specific factor 1 homolog [Nasonia vitripennis]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/470 (52%), Positives = 320/470 (68%), Gaps = 39/470 (8%)

Query: 3   SKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLR-----------QIDYEFDGSNYFYKD 51
           S+ + Y+GD  +YT+P + +Q  W++++N+W                +YEFDG NY Y D
Sbjct: 119 SENITYKGDKCIYTEPGTGRQLIWNSKENKWCAEGGSTSADTTDAMKNYEFDGKNYVYTD 178

Query: 52  KT-GTKYKWDTASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYG 110
           KT    YK+    N WV     V  DK +++ D    +EN+      P Q     +G YG
Sbjct: 179 KTTNVTYKFIQDKNEWV-----VKDDKHSETKD----NENDNADVPKPAQ-----EGVYG 224

Query: 111 YEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADL 170
           +E DTHTYTD +DGT YIWD+EKNAWFPKVDDDF+ARYQMSYGF +  NT       +D 
Sbjct: 225 FENDTHTYTDPSDGTSYIWDREKNAWFPKVDDDFMARYQMSYGFTD--NT------KSDT 276

Query: 171 VQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGE-ESTKVYVSNLPLDLTQ 229
            +S+V +   +   P +    EEK    +++  EPP WFDI E  +T +Y+SNLPLD+T 
Sbjct: 277 TESEVPKNPSNEPEPPKKLTKEEKKAENKRKNQEPPTWFDIDEAHNTTIYISNLPLDVTM 336

Query: 230 EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289
           EE  E++ KCGL+ +D +  + K+KLYTD    + KGDA CTYIK ESVDLAL+ILDG++
Sbjct: 337 EELKELVTKCGLLARD-EKGKDKLKLYTDA-DGEPKGDARCTYIKIESVDLALNILDGWQ 394

Query: 290 IRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNE 349
           +R K + V+RAKF +KG AYDP LK  K++KKD +K KK  EKL DWRPDK++GE  K E
Sbjct: 395 MRDKTLSVQRAKFQLKG-AYDPSLK-PKRKKKDKDKQKKIHEKLLDWRPDKLKGEPLKCE 452

Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 409
            V+I+KNLF P  FDKDVTL+LEYQQD+R+EC KCG VKKV ++D+HPEGVAQ+ FKEPE
Sbjct: 453 RVVIIKNLFKPEDFDKDVTLLLEYQQDVRKECIKCGEVKKVTIYDRHPEGVAQVTFKEPE 512

Query: 410 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
            A AC +LLNGRWF QR+ITAE WDGKT+YKI ET E+ EAR+ KW+ FL
Sbjct: 513 EAQACIQLLNGRWFDQRRITAEIWDGKTKYKILETEEQIEARINKWDKFL 562

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027330|ref|XP_003697380.1| PREDICTED: HIV Tat-specific factor 1 homolog [Apis florea]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/422 (51%), Positives = 281/422 (66%), Gaps = 38/422 (9%)

Query: 40  YEFDGSNYFYKDKTG-TKYKWDTASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPP 98
           Y+FDG +Y Y D T    YK+D   N WV               + EE +  N+      
Sbjct: 17  YKFDGQSYIYNDPTNNVTYKFDQQKNEWV-------------VKNTEETNVKNSNDNESK 63

Query: 99  IQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQP 158
            Q     +G +G+E DTHTYTD  DG+VY WDKEKNAWFPKVD+DF+ARYQMSYGF +  
Sbjct: 64  TQ-----EGVFGFENDTHTYTDPNDGSVYFWDKEKNAWFPKVDEDFMARYQMSYGFTDT- 117

Query: 159 NTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGE-ESTK 217
                         +++E K V  +        E+K +  +++  EPP WF++ E  +T 
Sbjct: 118 --------------NRIETKPVQQSQSQGKIDKEKKKMEAKRKSQEPPTWFEVDEAHNTA 163

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +YVS LPLD+T +E  E+  KCGL+ +D +  + KIKLY D   +  KGDALC YIK ES
Sbjct: 164 IYVSGLPLDITMDELTELFNKCGLIARD-EKGKDKIKLYKDSNGQP-KGDALCIYIKVES 221

Query: 278 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 337
           VDLAL ILD  +IRGK + V+RAKF MKG+AYDP LK  K++KKD E+ KK QEKLFDWR
Sbjct: 222 VDLALKILDKSQIRGKTLSVQRAKFQMKGDAYDPALK-PKRKKKDKERQKKLQEKLFDWR 280

Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 397
           P++  GE SK+E V+I+KNLF P  FDK+V+L+LEYQQD+R EC KCG V+KVV++D+HP
Sbjct: 281 PERAPGEPSKHERVVIIKNLFSPEDFDKEVSLLLEYQQDIRSECLKCGDVRKVVIYDRHP 340

Query: 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWET 457
           EGVAQ+ F+EP  A AC +LLNGRWF QR+I+AE WDGKT+YKI ET  E EAR+ KW+ 
Sbjct: 341 EGVAQVTFREPAEAQACIQLLNGRWFSQRKISAEIWDGKTKYKILETDAETEARIAKWDK 400

Query: 458 FL 459
           +L
Sbjct: 401 YL 402

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194875554|ref|XP_001973620.1| GG13238 [Drosophila erecta] gi|190655403|gb|EDV52646.1| GG13238 [Drosophila erecta]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/461 (49%), Positives = 312/461 (67%), Gaps = 30/461 (6%)

Query: 13  AVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPL 72
           A+YTDP ++Q+Y W   +N+W+    D E  GS   Y+++    Y+W   +  W+P    
Sbjct: 84  AIYTDPSTKQKYKWCPTQNQWQPLSAD-EAVGSGDLYENE---HYRWCPRTKQWLPK--- 136

Query: 73  VTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGY-EGDTHTYTDSTDGTVYIWDK 131
                    S+ E Y  ++ QK   P Q+    +G YG  E    TYTD  DG  + WD 
Sbjct: 137 ------KQESETEHYKWDDEQKVWVPKQQNPGQEGVYGVDEHGERTYTDK-DGVEFFWDA 189

Query: 132 EKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSK-----VEEKSVDATAPM 186
            K+AWFPK+DDDF+ARYQM+YGFI+  +  +++K   +  ++K     ++  + +A A M
Sbjct: 190 TKSAWFPKIDDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAAM 249

Query: 187 --ENPKAEEKVVPGQKRKPEPPKWFDIG-EESTKVYVSNLPLDLTQEEFVEVMQKCGLVM 243
             +NP     V  G+++  EPPKWF++   ++TKVYVSNLPLD++ +EF ++M KCG+VM
Sbjct: 250 SRDNPATSTAVPTGKRKAQEPPKWFEMDPSQNTKVYVSNLPLDISMDEFADLMGKCGMVM 309

Query: 244 KDVDTNQMKIKLYTDPYTKD--FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +D  T + K+KLY +   KD   KGD LC YIK ESV+LAL ILD Y +RG KI+V+RA+
Sbjct: 310 RDPQTQKFKLKLYAE---KDGQIKGDGLCDYIKVESVNLALKILDEYNLRGHKIRVQRAQ 366

Query: 302 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPA 361
           F M+GE Y+P LK  K++KKD EKL+K +EKLFDWRPDKMRGERSKNE  +I+KNLF P 
Sbjct: 367 FQMRGE-YNPALK-PKRKKKDKEKLQKMKEKLFDWRPDKMRGERSKNEKTVIIKNLFTPE 424

Query: 362 LFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 421
           LF+K+V LILEYQ +LREECSKCG V+KVV++D+HPEGVAQI    PE AD   +++ GR
Sbjct: 425 LFEKEVELILEYQNNLREECSKCGMVRKVVIYDRHPEGVAQINMASPEEADIVIQMMQGR 484

Query: 422 WFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKK 462
           +FGQRQ+TAE+WDGKT+YKI E+A E   RL KW+ FL ++
Sbjct: 485 YFGQRQLTAESWDGKTKYKIDESAVEANERLSKWDEFLAEE 525

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195495582|ref|XP_002095329.1| GE22336 [Drosophila yakuba] gi|194181430|gb|EDW95041.1| GE22336 [Drosophila yakuba]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/461 (49%), Positives = 311/461 (67%), Gaps = 30/461 (6%)

Query: 13  AVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPL 72
           A+YTDP ++Q+Y W + +N W+   +D E  G+   Y+++    YKW   +  W+P    
Sbjct: 84  AIYTDPSTKQKYKWCSTQNNWQTLSVD-EAGGAGDPYENE---HYKWCPKTQQWLPK--- 136

Query: 73  VTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGY-EGDTHTYTDSTDGTVYIWDK 131
                    ++ E Y  ++ QK   P Q     +G YG  E    TYTD  DG  + WD 
Sbjct: 137 ------KQETETEHYKWDDEQKKWVPKQPNPGQEGVYGVDEHGERTYTDK-DGVEFFWDA 189

Query: 132 EKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSK-----VEEKSVDATAPM 186
            K+AWFPK+DDDF+ARYQM+YGFI+  +  +++K   +  ++K     ++  + +A A M
Sbjct: 190 TKSAWFPKIDDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAAM 249

Query: 187 EN--PKAEEKVVPGQKRKPEPPKWFDIG-EESTKVYVSNLPLDLTQEEFVEVMQKCGLVM 243
            N  P     V  G+++  EPPKWF++   ++TKVYVSNLPLD+T +EF ++M KCG+VM
Sbjct: 250 SNKNPATSNAVPTGKRKVQEPPKWFEMDPSQNTKVYVSNLPLDITMDEFADLMGKCGMVM 309

Query: 244 KDVDTNQMKIKLYTDPYTKD--FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +D  T + K+KLY +   KD   KGD LC YIK ESV+LAL ILD Y +RG KI+V+RA+
Sbjct: 310 RDPQTQKFKLKLYAE---KDGQIKGDGLCDYIKVESVNLALKILDEYNLRGHKIRVQRAQ 366

Query: 302 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPA 361
           F M+GE Y+P LK  K++KKD EKL+K +EKLFDWRPDKMRGERSKNE  +I+KNLF P 
Sbjct: 367 FQMRGE-YNPALK-PKRKKKDKEKLQKMKEKLFDWRPDKMRGERSKNEKTVIIKNLFTPE 424

Query: 362 LFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 421
           LF+K+V LILEYQ +LREECSKCG V+KVV++D+HPEGVAQI    PE AD   +++ GR
Sbjct: 425 LFEKEVELILEYQNNLREECSKCGMVRKVVIYDRHPEGVAQINMASPEEADVVIQMMQGR 484

Query: 422 WFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKK 462
           +FGQRQ+TAE+WDGKT+YKI E+A E   RL KW+ FL ++
Sbjct: 485 YFGQRQLTAESWDGKTKYKIDESAVEAHERLSKWDEFLAEE 525

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418587|ref|XP_003491906.1| PREDICTED: HIV Tat-specific factor 1 homolog [Bombus impatiens]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/435 (50%), Positives = 290/435 (66%), Gaps = 40/435 (9%)

Query: 27  DNEKNEWKLRQIDYEFDGSNYFYKD-KTGTKYKWDTASNSWVPSVPLVTSDKAADSSDEE 85
           D EK E  ++   Y+FDG +Y YKD  T   Y++D   N W+      T  KA+D     
Sbjct: 6   DTEKAEDSMKH--YKFDGQSYIYKDPTTNVTYRFDRDKNEWMVKDTEETKTKASDD---- 59

Query: 86  EYDENNAQKTAPPIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFL 145
             +E  AQ+            G +G+E DTHTYTD  DG+VY WDKEKNAWFPKVD+DF+
Sbjct: 60  --NEVRAQE------------GVFGFENDTHTYTDPNDGSVYFWDKEKNAWFPKVDEDFM 105

Query: 146 ARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEP 205
           ARYQMSYGF +                SKVE  +V  +        E+K +  +++  EP
Sbjct: 106 ARYQMSYGFTDA---------------SKVETNTVQQSQAQVKIDKEKKKMEAKRKAHEP 150

Query: 206 PKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
           P WF++ E  +T +YVS LPLD+T +E  ++  KCGL+ +D +  + KIKLY D   +  
Sbjct: 151 PTWFEVDEAHNTAIYVSGLPLDITMDELTKLFNKCGLIARD-EKGKDKIKLYKDTNGQP- 208

Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE 324
           KGDALC YIK ESVDLAL ILD  +IRGK + V+RAKF MKG+AYDP LKPK+K+K   E
Sbjct: 209 KGDALCIYIKVESVDLALKILDKSQIRGKTLSVQRAKFQMKGDAYDPALKPKRKKKD-KE 267

Query: 325 KLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC 384
           + KK Q+KLFDWRP+++ GE  K+E V+++KNLF P  FD++V+L+LEYQQD+R EC KC
Sbjct: 268 RQKKLQDKLFDWRPERVLGEPLKHERVVVIKNLFSPEDFDQEVSLLLEYQQDIRSECLKC 327

Query: 385 GHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQET 444
           G V+KVV++D+HPEGVAQ+ F+EP  A AC +LLNGRWF QR+I+AE WDGKT+YK+ ET
Sbjct: 328 GDVRKVVIYDRHPEGVAQVTFREPAEAQACIQLLNGRWFSQRKISAEIWDGKTKYKVTET 387

Query: 445 AEEREARLKKWETFL 459
             E EAR+ KW+ +L
Sbjct: 388 DAEVEARIAKWDKYL 402

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479438|gb|EFX90394.1| hypothetical protein DAPPUDRAFT_299831 [Daphnia pulex]

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/471 (47%), Positives = 310/471 (65%), Gaps = 44/471 (9%)

Query: 8   YEGDVAVYTDPQSRQQYTWDNEKNEWKLR-------------QIDYEFDGSNYFYKDKTG 54
           YEGDV ++TDP +  QY W+ E+ +W+               +  YE  G+ Y YKD++G
Sbjct: 8   YEGDVCIHTDPATGYQYKWNAEEKKWEPNTKIETQVTADSNAEAKYERVGNTYVYKDESG 67

Query: 55  TKYKWDTASNSWVPSVPLVTSDKAADSSDEE--EYDENNAQKTAPPIQRQDMSKGSYGYE 112
              +WD  +  W P +      + A + DEE    DE+  +K     Q++ +        
Sbjct: 68  RLLEWDLEAKEWKPKLETQAIRRIAKNPDEEFDSSDESGEEKLLE--QKKSVINHHVHVN 125

Query: 113 GD-THTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLV 171
            D   TYTD +DGT++ WD+EK AWFPK+D++F+ARYQ+SYG   + +T    +P A+L 
Sbjct: 126 SDGVKTYTDPSDGTIFEWDEEKKAWFPKLDEEFIARYQLSYGG--EAST----EPVAELE 179

Query: 172 QSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGE-ESTKVYVSNLPLDLTQE 230
           + KVE            PK E       K++   P WF++ + ++TKVYV+NLP ++ +E
Sbjct: 180 KKKVEPP----------PKIE-------KKQDSEPNWFEVDQTKNTKVYVTNLPTEINEE 222

Query: 231 EFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290
           E VE MQKCG++ KD++T + KIKLY +      KGDALCTYIK ESV+LAL ILDG  +
Sbjct: 223 EIVEFMQKCGMIEKDLETGKHKIKLYRNE-NGQVKGDALCTYIKIESVELALKILDGSVL 281

Query: 291 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNES 350
           + K + VERA FT+KG  YDP  KP+K++KKD+EKL+K QEKLFDWRPDK+RGER++NE+
Sbjct: 282 KDKTVGVERATFTLKGN-YDPTKKPRKRKKKDVEKLRKKQEKLFDWRPDKLRGERARNEN 340

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
           V+++K LF P  FD +  ++LEYQ+DLREEC+K GHVK+VV+ D++ EG AQ+FFK PE 
Sbjct: 341 VVVLKRLFKPEEFDVNPAMLLEYQRDLREECAKFGHVKRVVIFDRNEEGAAQVFFKTPEE 400

Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGK 461
           AD C E+L+GRWF  ++ITAETWDG+T+Y+  ET EE+ ARLKKW  FL K
Sbjct: 401 ADRCVEVLHGRWFAGQKITAETWDGQTKYRKDETEEEKAARLKKWSEFLTK 451

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376801|ref|XP_002047181.1| GJ12075 [Drosophila virilis] gi|194154339|gb|EDW69523.1| GJ12075 [Drosophila virilis]

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/479 (48%), Positives = 305/479 (63%), Gaps = 33/479 (6%)

Query: 1   DRSKYVHYEGDV-AVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKW 59
           D  ++V Y  D  A+YTDP ++Q+Y W N +N W+    D      N +  +     YKW
Sbjct: 53  DYEQHVTYAADGGAIYTDPSTKQKYKWCNTENNWQPLTADEASTAGNLYENEH----YKW 108

Query: 60  DTASNSWVPSVPLVTSDKAADSSDEEEYDENNAQK------TAPPIQRQDMSKGSYGY-E 112
              +  W+P         +A S++ E Y  +  Q+           Q        YG  E
Sbjct: 109 CPETQKWLPK------QSSASSTETEHYKWDAEQQKWLPKQPQQQPQAAPGQDVVYGIDE 162

Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT--VDEKKPSADL 170
                YTD  DG V++WD  K+AWFPK+DDDF+ARYQM+YGFI+  +    ++++  A  
Sbjct: 163 NGDRIYTDK-DGIVFLWDASKSAWFPKIDDDFMARYQMNYGFIDNTSAGEREKEEREAAE 221

Query: 171 VQSKVEE---KSVDATAPMENP-----KAEEKVVPGQKRKPEPPKWFDIG-EESTKVYVS 221
           V+ K EE    + +A A M  P      A    V G+++  EPPKWF++   ++TKVYVS
Sbjct: 222 VKRKAEELKRMTAEAQAAMNAPILDKDGAPTASVTGKRKAQEPPKWFEVDPTQNTKVYVS 281

Query: 222 NLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLA 281
           NLPLD+T +EF E+M KCGL+M+D  T + K+KLYT+      KGD LC YIK ESV+LA
Sbjct: 282 NLPLDITMDEFAELMGKCGLIMRDPQTQKYKLKLYTEA-DGQIKGDGLCDYIKVESVNLA 340

Query: 282 LSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKM 341
           L ILD Y +RG KI V+RA+F M+GE Y+P LK  K++KKD EKL+K +EKLFDWRPDKM
Sbjct: 341 LEILDDYILRGHKIHVQRAQFQMRGE-YNPALK-PKRKKKDKEKLQKIKEKLFDWRPDKM 398

Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 401
           RGERSKNE  +I+KNLF P LF+K+V LILEYQ  LREEC KCG V+KVV++D+HPEGVA
Sbjct: 399 RGERSKNEKTVIIKNLFTPELFEKEVELILEYQTSLREECGKCGMVRKVVIYDRHPEGVA 458

Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLG 460
           QI    PE AD   +++ GR+FGQRQ++AE WDGKT+YKI E+A E   RL KW+ FL 
Sbjct: 459 QINMSTPEEADIVIQMMQGRYFGQRQLSAEHWDGKTKYKIDESAAEASERLSKWDEFLA 517

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198466675|ref|XP_001354089.2| GA19321 [Drosophila pseudoobscura pseudoobscura] gi|198150709|gb|EAL29828.2| GA19321 [Drosophila pseudoobscura pseudoobscura]

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/468 (49%), Positives = 312/468 (66%), Gaps = 33/468 (7%)

Query: 3   SKYVHY-EGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDT 61
           +++V Y E   A+YTDP S+Q+Y W N KN W     + E    N FYK        W  
Sbjct: 135 AEHVTYTENGDAIYTDPSSKQEYKWCNIKNSWLPMSGNGEDPYENEFYK--------WCD 186

Query: 62  ASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGY-EGDTHTYTD 120
            ++ W+P     T          E Y  +  Q T   +++Q      Y   E    TYTD
Sbjct: 187 ETSQWLPKTQTET----------EHYRWDEEQHTWV-LKQQPGQDAVYKLDEKGERTYTD 235

Query: 121 STDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEE--- 177
             DGTVY+WD EK+AWFPK+DDDF+A+YQM+YGFI+  +  +++K   ++ ++K +E   
Sbjct: 236 K-DGTVYLWDAEKSAWFPKIDDDFMAQYQMNYGFIDNTSAGEKEKADKEIAEAKRKEEEL 294

Query: 178 KSVDATAPMENPKAEEKVVP----GQKRKPEPPKWFDIG-EESTKVYVSNLPLDLTQEEF 232
           K + A A     + E  V P    G+++ PEPPKWF++   ++TKVYV NLPLD+T+EEF
Sbjct: 295 KRMTAEAEAAMARDESGVGPAASLGKRKAPEPPKWFEMDPSQNTKVYVDNLPLDITKEEF 354

Query: 233 VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292
            E+M KCG+VM+D  T Q K+KLYT+   + FKGD LC YIK ESV LAL ILD Y++RG
Sbjct: 355 AELMGKCGMVMRDPKTQQPKLKLYTEADGQ-FKGDGLCDYIKVESVHLALKILDDYDLRG 413

Query: 293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVI 352
            KI+V+RA+F M+GE Y+P LK  K++KKD EK++K +EKLFDWRPDKMRGERSK+E  +
Sbjct: 414 HKIRVQRAQFQMRGE-YNPALK-PKRKKKDKEKMQKMKEKLFDWRPDKMRGERSKHEKTV 471

Query: 353 IVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAAD 412
           I+KNLF P LF+K+V LILEYQ +LREEC KCG V+KVV++D+HPEG+AQI    PE AD
Sbjct: 472 ILKNLFTPELFEKEVELILEYQNNLREECGKCGMVRKVVIYDRHPEGIAQINMSSPEEAD 531

Query: 413 ACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLG 460
              +++ GR+FGQRQ+TA+ WDG+T+YKI E+A E   RL KW+ +L 
Sbjct: 532 LVIQMMQGRFFGQRQLTADHWDGQTKYKIDESAVEAHQRLSKWDEYLA 579

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295648|ref|XP_316330.4| AGAP006266-PA [Anopheles gambiae str. PEST] gi|157016137|gb|EAA10753.4| AGAP006266-PA [Anopheles gambiae str. PEST]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/476 (47%), Positives = 305/476 (64%), Gaps = 31/476 (6%)

Query: 3   SKYVHY-EGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDT 61
           +++V Y E   A+YTDP ++ QY W  EK+EW  R+   +  G            Y+W  
Sbjct: 111 AEHVTYNEAGEAIYTDPATKYQYRWSKEKSEWVPREESGKA-GETPTDNPYENEHYRWCH 169

Query: 62  ASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKG---SYGYEGDTHTY 118
               W+P    VT       ++   +DE  A K  P  +     +G   SYGYE   HTY
Sbjct: 170 ERKEWIPKQQNVTE------TEHYRWDEK-AAKWVPKDRPAGAGEGDDRSYGYEDGVHTY 222

Query: 119 TDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEK 178
            D  DG VY WD+E+ AWFPKVDD+F+A YQ++YGFI+  ++      +A      V E 
Sbjct: 223 KDK-DGAVYFWDEERKAWFPKVDDEFMAIYQLNYGFIDNTSSGGGPAAAAPAPARVVSEP 281

Query: 179 SV-DATAPMENPKAEEK-------------VVPGQKRKPEPPKWFDIG-EESTKVYVSNL 223
           S  +     E+  A+E+                 +K  PEPPKWF+I  E +TKVYVSNL
Sbjct: 282 SGRELPGCDEDDDADEQGEEAQRALAAAAAKGKKRKAPPEPPKWFEIAPEHNTKVYVSNL 341

Query: 224 PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 283
           P D+++EEF E+M KCG+VMKD  T+++K+KLY +P     KGD LC YIK ESVDLAL 
Sbjct: 342 PTDISEEEFGELMSKCGMVMKDPKTHKLKLKLYREP-DGTLKGDGLCHYIKIESVDLALK 400

Query: 284 ILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRG 343
           ILD Y++RG KIKV+RA+F M+GE Y+P LKPK ++K+  E+LKK QE LFDWRP KMRG
Sbjct: 401 ILDNYDVRGHKIKVQRAEFQMRGE-YNPTLKPKMRKKE-KERLKKIQESLFDWRPVKMRG 458

Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 403
           ERSK+E ++I+KNLF+P LFD++V L+LEYQ DLREEC KCG V++V+L+D+HPEGVAQ+
Sbjct: 459 ERSKHERIVIIKNLFEPELFDREVHLLLEYQNDLREECGKCGTVRRVLLYDRHPEGVAQV 518

Query: 404 FFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
              +PE AD   +L+NGR+FGQR++TA  WDG+T+Y+I ET  + + R   WE +L
Sbjct: 519 TMGDPEEADLVVQLMNGRFFGQRKLTAAIWDGRTKYRIAETDADIDKRRGNWEQYL 574

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357269|ref|NP_649313.1| barricade, isoform A [Drosophila melanogaster] gi|24668057|ref|NP_730629.1| barricade, isoform C [Drosophila melanogaster] gi|16769348|gb|AAL28893.1| LD27763p [Drosophila melanogaster] gi|23094232|gb|AAN12166.1| barricade, isoform A [Drosophila melanogaster] gi|23094233|gb|AAN12167.1| barricade, isoform C [Drosophila melanogaster] gi|220946898|gb|ACL85992.1| CG6049-PA [synthetic construct] gi|220956554|gb|ACL90820.1| CG6049-PA [synthetic construct]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/478 (47%), Positives = 317/478 (66%), Gaps = 30/478 (6%)

Query: 13  AVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDG-SNYFYKDKTGTKYKWDTASNSWVPSVP 71
           A+YTDP ++Q+Y W    N W+   +D + DG +   Y+++    YKW   S  W+P   
Sbjct: 84  AIYTDPSTKQKYKWCATGNNWQPLGVDEDVDGQAEDPYENE---HYKWCPKSQQWLPK-- 138

Query: 72  LVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGY-EGDTHTYTDSTDGTVYIWD 130
                     ++ E Y  ++ QK   P       +G  G  E    TYTD  DG  + WD
Sbjct: 139 -------KQETETEHYKWDDEQKKWVPKHPNPGQEGVCGVDEHGERTYTDK-DGVEFFWD 190

Query: 131 KEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSK-----VEEKSVDATAP 185
             K+AWFPK+DDDF+ARYQM+YGFI+  +  +++K   +  ++K     ++  + +A A 
Sbjct: 191 ATKSAWFPKIDDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAA 250

Query: 186 M--ENPKAEEKVVPGQKRKPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLV 242
           M  +NP +   V  G+++  EPPKWF++   ++TKVYVSNLPLD+T +EF ++M KCG+V
Sbjct: 251 MSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEFADLMGKCGMV 310

Query: 243 MKDVDTNQMKIKLYTDPYTKD--FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
           M+D  T + K+KLY +   KD   KGD LC YIK ESV+LAL ILD Y +RG KI+V+RA
Sbjct: 311 MRDPQTQKFKLKLYAE---KDGQIKGDGLCDYIKVESVNLALKILDEYNLRGHKIRVQRA 367

Query: 301 KFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDP 360
           +F M+GE Y+P LK  K++KKD EKL+K +EKLFDWRPDK+RGERSKNE  +I+KNLF P
Sbjct: 368 QFQMRGE-YNPALK-PKRKKKDKEKLQKMKEKLFDWRPDKLRGERSKNEKTVIIKNLFTP 425

Query: 361 ALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNG 420
            LF+K+V LILEYQ +LREECSKCG V+KVV++D+HP+GVAQI    PE AD   +++ G
Sbjct: 426 ELFEKEVELILEYQNNLREECSKCGMVRKVVIYDRHPDGVAQINMASPEEADLVIQMMQG 485

Query: 421 RWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYD 478
           R+FGQRQ++AE WDGKT+YKI+E+A E   RL KW+ FL ++   ++A   MK E  D
Sbjct: 486 RYFGQRQLSAEAWDGKTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDMKEEDVD 543

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	773
FB|FBgn0037081	556	barc "barricade" [Drosophila m	0.593	0.825	0.442	9.5e-105
ZFIN|ZDB-GENE-040426-1578	450	htatsf1 "HIV TAT specific fact	0.441	0.757	0.470	1.9e-85
MGI|MGI:1919709	757	Htatsf1 "HIV TAT specific fact	0.434	0.443	0.446	7.4e-84
RGD|1563377	776	Htatsf1 "HIV-1 Tat specific fa	0.434	0.432	0.444	6.6e-83
UNIPROTKB|G3N370	756	HTATSF1 "Uncharacterized prote	0.437	0.447	0.436	1e-80
UNIPROTKB|F1P1G7	450	HTATSF1 "Uncharacterized prote	0.455	0.782	0.453	2.2e-80
UNIPROTKB|I3LC46	760	HTATSF1 "Uncharacterized prote	0.434	0.442	0.441	2e-79
UNIPROTKB|E2R8T8	750	HTATSF1 "Uncharacterized prote	0.434	0.448	0.432	1.4e-78
UNIPROTKB|J9NZQ1	768	HTATSF1 "Uncharacterized prote	0.434	0.437	0.432	1.4e-78
UNIPROTKB|O43719	755	HTATSF1 "HIV Tat-specific fact	0.437	0.447	0.440	1.4e-76

FB|FBgn0037081 barc "barricade" [Drosophila melanogaster (taxid:7227)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 215/486 (44%), Positives = 298/486 (61%)

Query:     4 KYVHYEGDV-AVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDG-SNYFYKDKTGTKYKWDT 61
             +++ Y  D  A+YTDP ++Q+Y W    N W+   +D + DG +   Y+++    YKW  
Sbjct:    74 EHMTYGADGGAIYTDPSTKQKYKWCATGNNWQPLGVDEDVDGQAEDPYENE---HYKWCP 130

Query:    62 ASNSWVPSVPLVTXXXXXXXXXXXXXXXXXXQKTAPPIQRQDMSKGSYGY-EGDTHTYTD 120
              S  W+P                        QK   P       +G  G  E    TYTD
Sbjct:   131 KSQQWLPK---------KQETETEHYKWDDEQKKWVPKHPNPGQEGVCGVDEHGERTYTD 181

Query:   121 STDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSV 180
               DG  + WD  K+AWFPK+DDDF+ARYQM+YGFI+  +  +++K   +  ++K +E+ +
Sbjct:   182 K-DGVEFFWDATKSAWFPKIDDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEEL 240

Query:   181 -----DATAPM--ENPKAEEKVVPGQKRKPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEF 232
                  +A A M  +NP +   V  G+++  EPPKWF++   ++TKVYVSNLPLD+T +EF
Sbjct:   241 KRMTAEAEAAMSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEF 300

Query:   233 VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292
              ++M KCG+VM+D  T + K+KLY +      KGD LC YIK ESV+LAL ILD Y +RG
Sbjct:   301 ADLMGKCGMVMRDPQTQKFKLKLYAEK-DGQIKGDGLCDYIKVESVNLALKILDEYNLRG 359

Query:   293 KKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRGERSKNESVI 352
              KI+V+RA+F M+GE Y+P                      FDWRPDK+RGERSKNE  +
Sbjct:   360 HKIRVQRAQFQMRGE-YNPALKPKRKKKDKEKLQKMKEKL-FDWRPDKLRGERSKNEKTV 417

Query:   353 IVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAAD 412
             I+KNLF P LF+K+V LILEYQ +LREECSKCG V+KVV++D+HP+GVAQI    PE AD
Sbjct:   418 IIKNLFTPELFEKEVELILEYQNNLREECSKCGMVRKVVIYDRHPDGVAQINMASPEEAD 477

Query:   413 ACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTM 472
                +++ GR+FGQRQ++AE WDGKT+YKI+E+A E   RL KW+ FL ++   ++A   M
Sbjct:   478 LVIQMMQGRYFGQRQLSAEAWDGKTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDM 537

Query:   473 KGEAYD 478
             K E  D
Sbjct:   538 KEEDVD 543

GO:0003729 "mRNA binding" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-1578 htatsf1 "HIV TAT specific factor 1" [Danio rerio (taxid:7955)]

 Score = 815 (292.0 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
 Identities = 167/355 (47%), Positives = 226/355 (63%)

Query:   114 DTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKP--SADLV 171
             D +TYTD  DGTVY WD EK AWFPK++DDF+A YQ +YGF E+    D      SA+ +
Sbjct:    30 DPYTYTDPEDGTVYDWDHEKRAWFPKINDDFIAAYQANYGFNEE-GAPDPSAAVNSAESL 88

Query:   172 QSKVEE--KSVDATAPME---NPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPL 225
              +K EE  K  + T P E     K +E    G+KRK +P  WF++ +E +T V+V+ LP 
Sbjct:    89 PAKSEEPKKPEEPTKPAEASDQGKNKEGEKKGEKRKADPT-WFEVEKEKNTNVHVTGLPP 147

Query:   226 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 285
             D+T +EFV VM KCG+VM+D  T + KI++Y D      KGD LC Y+KKESV LA  +L
Sbjct:   148 DITPDEFVGVMSKCGIVMRDPITEEYKIRIYKDKDGNQ-KGDGLCCYLKKESVALAKQLL 206

Query:   286 DGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRGER 345
             D  EIRG ++ VE A+F +KG+ +D                        DWRP+K    R
Sbjct:   207 DETEIRGYRLHVEEARFELKGQ-FD--ASKKKKKNKEYRKKLQQQQKQLDWRPEKSGEVR 263

Query:   346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFF 405
              ++E VII++N+F P  F++D  ++ EY+ DLR EC K G VKKV++ D+HP+GVA + F
Sbjct:   264 KRHEKVIIIQNMFHPTDFEEDPLVLNEYRDDLRTECEKFGQVKKVIIFDRHPDGVASVAF 323

Query:   406 KEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLG 460
             KEPE ADAC+  LNGRWFG R+++A  WDG T Y+++ET+ ERE RLK W +FLG
Sbjct:   324 KEPEEADACQVALNGRWFGGRKLSALLWDGVTDYQVEETSREREERLKGWLSFLG 378

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1919709 Htatsf1 "HIV TAT specific factor 1" [Mus musculus (taxid:10090)]

 Score = 771 (276.5 bits), Expect = 7.4e-84, Sum P(3) = 7.4e-84
 Identities = 156/349 (44%), Positives = 216/349 (61%)

Query:   113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
             G+ H+     D T Y WD +K AWFPK+ +DF+A YQ +YGF     + D    S   VQ
Sbjct:    37 GEAHSLGQPPDDTPYEWDLDKKAWFPKITEDFIATYQANYGF-----SSDGASSSTANVQ 91

Query:   173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
                  K+V+     E P+  +    G+KRK E   WF + E+ +T VYVS LP D+T +E
Sbjct:    92 D-ANTKAVEEPPQKEVPETPDSKRKGEKRKAESG-WFHVEEDRNTNVYVSGLPPDITVDE 149

Query:   232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
             F+++M K G++M+D  T + K+KLY D    + KGD LC Y+KKESV+LAL +LD  EIR
Sbjct:   150 FIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLKKESVELALKLLDEDEIR 208

Query:   292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
             G K+ VE AKF +KGE YD                        DWRP++  G  R ++E 
Sbjct:   209 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHER 265

Query:   351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
             V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE 
Sbjct:   266 VVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 325

Query:   411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
             AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+ WE FL
Sbjct:   326 ADHCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 374

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1563377 Htatsf1 "HIV-1 Tat specific factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 762 (273.3 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
 Identities = 155/349 (44%), Positives = 216/349 (61%)

Query:   113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
             G+T +     D T Y WD +K AWFPK+ +DF+A YQ +YGF     + D    S   VQ
Sbjct:    36 GETDSLGQPPDDTPYEWDLDKKAWFPKITEDFIASYQANYGF-----SGDGAPSSTGNVQ 90

Query:   173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
                  K+V+     E P+  +    G+KRK E   WF + E+ +T VYVS LP D+T +E
Sbjct:    91 D-ANTKTVEEPPQKEIPETTDSKKRGEKRKAESG-WFHVEEDRNTNVYVSGLPPDITVDE 148

Query:   232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
             F+++M K G++M+D  T + K+KLY D    + KGD LC Y+KKESV+LAL +LD  EIR
Sbjct:   149 FIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLKKESVELALKLLDEDEIR 207

Query:   292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
             G K+ VE A+F +KGE YD                        DWRP++  G  R ++E 
Sbjct:   208 GYKLHVEVAQFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHER 264

Query:   351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
             V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE 
Sbjct:   265 VVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 324

Query:   411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
             AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+ WE FL
Sbjct:   325 ADNCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|G3N370 HTATSF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 737 (264.5 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
 Identities = 156/357 (43%), Positives = 212/357 (59%)

Query:   110 GYEGDTHTYTDS-----TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEK 164
             G E D    TDS     TD T Y WD +K AWFPK+ +DF+A YQ +YGF       D  
Sbjct:    29 GTEKDPGAETDSFRQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSN-----DGA 82

Query:   165 KPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNL 223
               S   VQ  V  ++ +     + P   +    G+KRK E   WF + ++ +T VYVS L
Sbjct:    83 SNSTASVQD-VSARTAEEPPQRQPPDPSDLKKKGEKRKTESG-WFHVEDDRNTNVYVSGL 140

Query:   224 PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 283
             P D+T +EF+++M K G++M+D  T   K+KLY D    + KGD LC Y+K+ESVDLAL 
Sbjct:   141 PPDITVDEFIQLMSKFGIIMRDPQTGDFKVKLYKDDQG-NLKGDGLCCYLKRESVDLALK 199

Query:   284 ILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG 343
             +LD  EIRG ++ VE AKF +KGE YD                        DWRP++  G
Sbjct:   200 LLDEGEIRGYRLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQLDWRPERQAG 256

Query:   344 E-RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ 402
               R  +E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA 
Sbjct:   257 SSRMYHERVVIIKNMFHPVDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVAS 316

Query:   403 IFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
             + F+ PE AD C + LNGRWFG RQITA+ WDG T  +++ET  ERE RL+ WE FL
Sbjct:   317 VSFRSPEEADYCIQTLNGRWFGGRQITAQAWDGTTDCQVEETTSEREERLRGWEAFL 373

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P1G7 HTATSF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 166/366 (45%), Positives = 224/366 (61%)

Query:   100 QRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPN 159
             Q+ +  +G  G + D  TY D  DG  Y WD+EK AWFPK+ +DFLA Y  +YGF    +
Sbjct:    18 QQYEADRGGEG-DADPFTYVDPADGAAYEWDREKKAWFPKITEDFLATYHANYGF--NAD 74

Query:   160 TVDEKKPSADLVQSKVEEKS-VDATAPMENPKAEEKVVPGQK---RKPEPPKWFDIGEE- 214
               D    S    ++K+   S    T P  N K  ++  P QK   RK EP  WF + E+ 
Sbjct:    75 ETDSSSASGTASENKLPLSSKTSETQPSANEKGPKQTEPKQKTEKRKLEPG-WFHVEEDR 133

Query:   215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
             +T VYV+ LP D+T++EFV+VM K G++M+D  T + KIKLY D    + KGD LC Y+K
Sbjct:   134 NTNVYVTGLPPDITKDEFVQVMSKGGIIMRDPQTEEHKIKLYKDK-EGNLKGDGLCCYLK 192

Query:   275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 334
             +ESV LAL +LD  EIRG K+ VE AKF +KGE YD                        
Sbjct:   193 RESVQLALRLLDEAEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSQQQKQL 249

Query:   335 DWRPDKMRGE-RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
             DWRP+K  G  R ++E ++I++N+F P  F++D  ++ E ++DLR EC K G VKKV++ 
Sbjct:   250 DWRPEKKDGAARMRHERIVIIRNMFHPKDFEEDPLVLNEIREDLRTECEKFGQVKKVLIF 309

Query:   394 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453
             D+HP+GVA + FKE   AD C+  LNGRWFG RQ++AETWDG T Y+++ETA ERE RLK
Sbjct:   310 DRHPDGVASVSFKEATEADLCKLTLNGRWFGGRQLSAETWDGVTDYQVEETAREREERLK 369

Query:   454 KWETFL 459
              W +FL
Sbjct:   370 VWGSFL 375

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LC46 HTATSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 764 (274.0 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
 Identities = 154/349 (44%), Positives = 215/349 (61%)

Query:   113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
             G+T ++      T Y WD +K AWFPK+ +DF+A YQ +YGF       D    SA  VQ
Sbjct:    36 GETDSFGQQPADTPYEWDLDKKAWFPKITEDFIATYQANYGFSN-----DGASSSAASVQ 90

Query:   173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
               V  ++ +     + P+  +    G+KRK E   WF + E+ +T VYVS LP D+T +E
Sbjct:    91 D-VSARTTEEPPQRKTPEPSDPRKKGEKRKAESG-WFHVEEDRNTNVYVSGLPPDITVDE 148

Query:   232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
             F+++M K G++M+D  T + K+KLY D    + KGD LC Y+K+ESVDLAL +LD  EIR
Sbjct:   149 FIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVDLALKLLDEDEIR 207

Query:   292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
             G K+ VE AKF +KGE YD                        DWRP++  G  R ++E 
Sbjct:   208 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHER 264

Query:   351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
             V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE 
Sbjct:   265 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 324

Query:   411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
             AD C + L+GRWFG RQITAE WDG T Y+++E+  ERE RL+ WE FL
Sbjct:   325 ADYCIQTLDGRWFGGRQITAEAWDGTTDYQVEESTREREERLRGWEAFL 373

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2R8T8 HTATSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 757 (271.5 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 151/349 (43%), Positives = 217/349 (62%)

Query:   113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
             G+  ++      T Y WD +K AWFPK+ +DF+A YQ +YGF  +         +A+ VQ
Sbjct:    36 GEPDSFGQQPADTPYEWDLDKKAWFPKITEDFIATYQANYGFSNE----GASSSTAN-VQ 90

Query:   173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
              +V  ++ +     + P+  +    G+KRK EP  WF + E+ +T VYVS LP D+T +E
Sbjct:    91 -EVSARTAEEPPQRKTPEPNDPKKRGEKRKAEPG-WFHVEEDRNTNVYVSGLPPDITVDE 148

Query:   232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
             F+++M K G++M+D  T + K+KLY D    + KGD LC Y+K+ESVDLAL +LD  EIR
Sbjct:   149 FIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVDLALKLLDEDEIR 207

Query:   292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
             G K+ VE AKF +KGE YD                        DWRP++  G  R ++E 
Sbjct:   208 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPSRMRHER 264

Query:   351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
             V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + F++PE 
Sbjct:   265 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEE 324

Query:   411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
             AD C + L+GRWFG RQITA+ WDG T Y+++ET  ERE RL+ WE FL
Sbjct:   325 ADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLRGWEAFL 373

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NZQ1 HTATSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 757 (271.5 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 151/349 (43%), Positives = 217/349 (62%)

Query:   113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
             G+  ++      T Y WD +K AWFPK+ +DF+A YQ +YGF  +         +A+ VQ
Sbjct:    36 GEPDSFGQQPADTPYEWDLDKKAWFPKITEDFIATYQANYGFSNE----GASSSTAN-VQ 90

Query:   173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
              +V  ++ +     + P+  +    G+KRK EP  WF + E+ +T VYVS LP D+T +E
Sbjct:    91 -EVSARTAEEPPQRKTPEPNDPKKRGEKRKAEPG-WFHVEEDRNTNVYVSGLPPDITVDE 148

Query:   232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
             F+++M K G++M+D  T + K+KLY D    + KGD LC Y+K+ESVDLAL +LD  EIR
Sbjct:   149 FIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVDLALKLLDEDEIR 207

Query:   292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
             G K+ VE AKF +KGE YD                        DWRP++  G  R ++E 
Sbjct:   208 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPSRMRHER 264

Query:   351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
             V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + F++PE 
Sbjct:   265 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEE 324

Query:   411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
             AD C + L+GRWFG RQITA+ WDG T Y+++ET  ERE RL+ WE FL
Sbjct:   325 ADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLRGWEAFL 373

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O43719 HTATSF1 "HIV Tat-specific factor 1" [Homo sapiens (taxid:9606)]

 Score = 751 (269.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
 Identities = 159/361 (44%), Positives = 222/361 (61%)

Query:   110 GYEGDTHTYT----DS-----TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
             G +GDT T      DS     TD T Y WD +K AWFPK+ +DF+A YQ +YGF    + 
Sbjct:    25 GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSN--DG 81

Query:   161 VDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVY 219
                   + + V ++  E+     AP E   A +K   G+KRK E   WF + E+ +T VY
Sbjct:    82 ASSSTANVEDVHARTAEEPPQEKAP-EPTDARKK---GEKRKAESG-WFHVEEDRNTNVY 136

Query:   220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279
             VS LP D+T +EF+++M K G++M+D  T + K+KLY D    + KGD LC Y+K+ESV+
Sbjct:   137 VSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVE 195

Query:   280 LALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPD 339
             LAL +LD  EIRG K+ VE AKF +KGE YD                        DWRP+
Sbjct:   196 LALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQLDWRPE 252

Query:   340 KMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
             +  G  R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+
Sbjct:   253 RRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPD 312

Query:   399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETF 458
             GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+ WE F
Sbjct:   313 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAF 372

Query:   459 L 459
             L
Sbjct:   373 L 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0019079 "viral genome replication" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	773
cd12282	91	cd12282, RRM2_TatSF1_like, RNA recognition motif 2	6e-42
cd12282	91	cd12282, RRM2_TatSF1_like, RNA recognition motif 2	6e-42
cd12281	92	cd12281, RRM1_TatSF1_like, RNA recognition motif 1	5e-40
cd12281	92	cd12281, RRM1_TatSF1_like, RNA recognition motif 1	5e-39
cd12285	85	cd12285, RRM3_RBM39_like, RNA recognition motif 3	2e-25
cd12285	85	cd12285, RRM3_RBM39_like, RNA recognition motif 3	2e-25
cd12280	81	cd12280, RRM_FET, RNA recognition motif in the FET	4e-15
cd12280	81	cd12280, RRM_FET, RNA recognition motif in the FET	4e-15
cd12374	85	cd12374, RRM_UHM_SPF45_PUF60, RNA recognition moti	8e-12
cd12374	85	cd12374, RRM_UHM_SPF45_PUF60, RNA recognition moti	8e-12
smart00360	73	smart00360, RRM, RNA recognition motif	1e-11
smart00360	73	smart00360, RRM, RNA recognition motif	1e-11
cd12648	98	cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 i	1e-11
cd12648	98	cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 i	1e-11
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	1e-10
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	1e-10
cd12232	89	cd12232, RRM3_U2AF65, RNA recognition motif 3 foun	6e-10
cd12232	89	cd12232, RRM3_U2AF65, RNA recognition motif 3 foun	6e-10
cd12398	75	cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot	8e-10
cd12398	75	cd12398, RRM_CSTF2_RNA15_like, RNA recognition mot	8e-10
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	8e-10
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	1e-09
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	2e-09
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	2e-09
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	3e-09
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	3e-09
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	3e-09
cd12534	83	cd12534, RRM_SARFH, RNA recognition motif in Droso	1e-08
cd12534	83	cd12534, RRM_SARFH, RNA recognition motif in Droso	1e-08
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	2e-08
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	2e-08
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	5e-08
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	5e-08
cd12249	78	cd12249, RRM1_hnRNPR_like, RNA recognition motif 1	5e-08
cd12249	78	cd12249, RRM1_hnRNPR_like, RNA recognition motif 1	5e-08
COG0724	306	COG0724, COG0724, RNA-binding proteins (RRM domain	1e-07
cd12533	84	cd12533, RRM_EWS, RNA recognition motif in vertebr	2e-07
cd12533	84	cd12533, RRM_EWS, RNA recognition motif in vertebr	2e-07
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	5e-07
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	5e-07
cd12647	96	cd12647, RRM_UHM_SPF45, RNA recognition motif in U	6e-07
cd12647	96	cd12647, RRM_UHM_SPF45, RNA recognition motif in U	6e-07
smart00360	73	smart00360, RRM, RNA recognition motif	8e-07
smart00360	73	smart00360, RRM, RNA recognition motif	8e-07
cd12399	78	cd12399, RRM_HP0827_like, RNA recognition motif in	1e-06
cd12399	78	cd12399, RRM_HP0827_like, RNA recognition motif in	1e-06
cd12382	80	cd12382, RRM_RBMX_like, RNA recognition motif in h	2e-06
cd12382	80	cd12382, RRM_RBMX_like, RNA recognition motif in h	2e-06
cd12671	75	cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif i	3e-06
cd12671	75	cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif i	3e-06
cd12482	79	cd12482, RRM1_hnRNPR, RNA recognition motif 1 in v	3e-06
cd12482	79	cd12482, RRM1_hnRNPR, RNA recognition motif 1 in v	3e-06
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	4e-06
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	8e-06
cd12287	102	cd12287, RRM_U2AF35_like, RNA recognition motif in	8e-06
cd12287	102	cd12287, RRM_U2AF35_like, RNA recognition motif in	8e-06
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	2e-05
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	2e-05
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	3e-05
pfam14259	69	pfam14259, RRM_6, RNA recognition motif (a	3e-05
cd12535	86	cd12535, RRM_FUS_TAF15, RNA recognition motif in v	3e-05
cd12400	74	cd12400, RRM_Nop6, RNA recognition motif in Saccha	3e-05
cd12400	74	cd12400, RRM_Nop6, RNA recognition motif in Saccha	3e-05
cd12284	73	cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2	5e-05
cd12284	73	cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2	5e-05
cd12483	79	cd12483, RRM1_hnRNPQ, RNA recognition motif 1 in v	5e-05
cd12483	79	cd12483, RRM1_hnRNPQ, RNA recognition motif 1 in v	5e-05
cd12389	77	cd12389, RRM2_RAVER, RNA recognition motif 2 in ri	6e-05
cd12389	77	cd12389, RRM2_RAVER, RNA recognition motif 2 in ri	6e-05
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	7e-05
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	7e-05
cd12446	84	cd12446, RRM_RBM25, RNA recognition motif in eukar	1e-04
cd12446	84	cd12446, RRM_RBM25, RNA recognition motif in eukar	1e-04
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	1e-04
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	1e-04
cd12393	78	cd12393, RRM_ZCRB1, RNA recognition motif in Zinc	1e-04
cd12393	78	cd12393, RRM_ZCRB1, RNA recognition motif in Zinc	1e-04
cd12231	77	cd12231, RRM2_U2AF65, RNA recognition motif 2 foun	1e-04
cd12231	77	cd12231, RRM2_U2AF65, RNA recognition motif 2 foun	1e-04
cd12535	86	cd12535, RRM_FUS_TAF15, RNA recognition motif in v	2e-04
cd12273	71	cd12273, RRM1_NEFsp, RNA recognition motif 1 in ve	2e-04
cd12273	71	cd12273, RRM1_NEFsp, RNA recognition motif 1 in ve	2e-04
cd12298	78	cd12298, RRM3_Prp24, RNA recognition motif 3 in fu	2e-04
cd12298	78	cd12298, RRM3_Prp24, RNA recognition motif 3 in fu	2e-04
TIGR01648	578	TIGR01648, hnRNP-R-Q, heterogeneous nuclear ribonu	3e-04
cd12304	93	cd12304, RRM_Set1, RNA recognition motif in the Se	4e-04
cd12304	93	cd12304, RRM_Set1, RNA recognition motif in the Se	4e-04
cd12395	73	cd12395, RRM2_RBM34, RNA recognition motif 2 in RN	4e-04
cd12395	73	cd12395, RRM2_RBM34, RNA recognition motif 2 in RN	4e-04
cd12484	78	cd12484, RRM1_RBM46, RNA recognition motif 1 found	6e-04
cd12484	78	cd12484, RRM1_RBM46, RNA recognition motif 1 found	6e-04
cd12411	89	cd12411, RRM_ist3_like, RNA recognition motif in i	7e-04
cd12362	73	cd12362, RRM3_CELF1-6, RNA recognition motif 3 in	7e-04
cd12362	73	cd12362, RRM3_CELF1-6, RNA recognition motif 3 in	7e-04
TIGR01648	578	TIGR01648, hnRNP-R-Q, heterogeneous nuclear ribonu	0.001
cd12272	72	cd12272, RRM2_PHIP1, RNA recognition motif 2 in Ar	0.002
cd12272	72	cd12272, RRM2_PHIP1, RNA recognition motif 2 in Ar	0.002
cd12415	82	cd12415, RRM3_RBM28_like, RNA recognition motif 3	0.002
cd12415	82	cd12415, RRM3_RBM28_like, RNA recognition motif 3	0.002
cd12415	82	cd12415, RRM3_RBM28_like, RNA recognition motif 3	0.002
cd12415	82	cd12415, RRM3_RBM28_like, RNA recognition motif 3	0.002
cd12375	77	cd12375, RRM1_Hu_like, RNA recognition motif 1 in	0.002
cd12375	77	cd12375, RRM1_Hu_like, RNA recognition motif 1 in	0.002
cd12411	89	cd12411, RRM_ist3_like, RNA recognition motif in i	0.003
cd12283	73	cd12283, RRM1_RBM39_like, RNA recognition motif 1	0.003
cd12283	73	cd12283, RRM1_RBM39_like, RNA recognition motif 1	0.003
cd12296	71	cd12296, RRM1_Prp24, RNA recognition motif 1 in fu	0.003
cd12296	71	cd12296, RRM1_Prp24, RNA recognition motif 1 in fu	0.003
cd12343	66	cd12343, RRM1_2_CoAA_like, RNA recognition motif 1	0.003
cd12343	66	cd12343, RRM1_2_CoAA_like, RNA recognition motif 1	0.003
cd12651	79	cd12651, RRM2_SXL, RNA recognition motif 2 in Dros	0.003
cd12651	79	cd12651, RRM2_SXL, RNA recognition motif 2 in Dros	0.003
cd12418	75	cd12418, RRM_Aly_REF_like, RNA recognition motif i	0.003
cd12418	75	cd12418, RRM_Aly_REF_like, RNA recognition motif i	0.003
cd12370	76	cd12370, RRM1_PUF60, RNA recognition motif 1 in (U	0.003
cd12370	76	cd12370, RRM1_PUF60, RNA recognition motif 1 in (U	0.003
cd12380	80	cd12380, RRM3_I_PABPs, RNA recognition motif 3 fou	0.004
cd12380	80	cd12380, RRM3_I_PABPs, RNA recognition motif 3 fou	0.004
cd12371	77	cd12371, RRM2_PUF60, RNA recognition motif 2 in (U	0.004
cd12371	77	cd12371, RRM2_PUF60, RNA recognition motif 2 in (U	0.004
cd12392	81	cd12392, RRM2_SART3, RNA recognition motif 2 in sq	0.004
cd12392	81	cd12392, RRM2_SART3, RNA recognition motif 2 in sq	0.004

>gnl|CDD|240728 cd12282, RRM2_TatSF1_like, RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins

 Score =  146 bits (372), Expect = 6e-42
 Identities = 58/91 (63%), Positives = 68/91 (74%)

Query: 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEP 408
           E V+I+KNLF P  F++D TLI E + DLREEC K G VKKVV+ D+HP+GVA + FKEP
Sbjct: 1   EKVVILKNLFSPEEFEEDPTLINELRDDLREECEKFGQVKKVVVFDRHPDGVASVKFKEP 60

Query: 409 EAADACRELLNGRWFGQRQITAETWDGKTRY 439
           E AD C E LNGRWF  RQ+ AE WDGKT Y
Sbjct: 61  EEADRCIEALNGRWFAGRQLEAERWDGKTDY 91

This subfamily corresponds to the RRM2 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well. . Length = 91

>gnl|CDD|240728 cd12282, RRM2_TatSF1_like, RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins

 Score =  146 bits (372), Expect = 6e-42
 Identities = 58/91 (63%), Positives = 68/91 (74%)

Query: 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEP 693
           E V+I+KNLF P  F++D TLI E + DLREEC K G VKKVV+ D+HP+GVA + FKEP
Sbjct: 1   EKVVILKNLFSPEEFEEDPTLINELRDDLREECEKFGQVKKVVVFDRHPDGVASVKFKEP 60

Query: 694 EAADACRELLNGRWFGQRQITAETWDGKTRY 724
           E AD C E LNGRWF  RQ+ AE WDGKT Y
Sbjct: 61  EEADRCIEALNGRWFAGRQLEAERWDGKTDY 91

This subfamily corresponds to the RRM2 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well. . Length = 91

>gnl|CDD|240727 cd12281, RRM1_TatSF1_like, RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins

 Score =  141 bits (359), Expect = 5e-40
 Identities = 58/93 (62%), Positives = 71/93 (76%), Gaps = 2/93 (2%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           NT VYVS LPLD+T EEFVEV  KCG++ +D +T + KIKLY D      KGDALC Y+K
Sbjct: 1   NTNVYVSGLPLDITVEEFVEVFSKCGIIKEDPETGKPKIKLYRDENGN-LKGDALCCYLK 59

Query: 560 KESVDLALSILDGYEI-RGKKIKVERAKFTMKG 591
           +ESV+LA+ +LDG EI RG K+KVERAKF +KG
Sbjct: 60  EESVELAIQLLDGTEIGRGYKMKVERAKFQLKG 92

This subfamily corresponds to the RRM1 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well. . Length = 92

>gnl|CDD|240727 cd12281, RRM1_TatSF1_like, RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins

 Score =  139 bits (352), Expect = 5e-39
 Identities = 57/92 (61%), Positives = 70/92 (76%), Gaps = 2/92 (2%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T VYVS LPLD+T EEFVEV  KCG++ +D +T + KIKLY D      KGDALC Y+K+
Sbjct: 2   TNVYVSGLPLDITVEEFVEVFSKCGIIKEDPETGKPKIKLYRDENGN-LKGDALCCYLKE 60

Query: 276 ESVDLALSILDGYEI-RGKKIKVERAKFTMKG 306
           ESV+LA+ +LDG EI RG K+KVERAKF +KG
Sbjct: 61  ESVELAIQLLDGTEIGRGYKMKVERAKFQLKG 92

This subfamily corresponds to the RRM1 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well. . Length = 92

>gnl|CDD|240731 cd12285, RRM3_RBM39_like, RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score =  100 bits (251), Expect = 2e-25
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
            +I+KN+FDPA   +D     E ++D+ EECSK G V+ + +    PEGV  + FK  EA
Sbjct: 3   CVILKNMFDPAEETED-EWDDEIKEDVLEECSKFGPVEHIKVDKNSPEGVVYVKFKTVEA 61

Query: 411 ADACRELLNGRWFGQRQITAETWD 434
           A  C + LNGRWF  RQITAE  D
Sbjct: 62  AQKCIQALNGRWFDGRQITAEYVD 85

This subfamily corresponds to the RRM3 of RBM39, also termed hepatocellular carcinoma protein 1, or RNA-binding region-containing protein 2, or splicing factor HCC1, ia nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Based on the specific domain composition, RBM39 has been classified into a family of non-snRNP (small nuclear ribonucleoprotein) splicing factors that are usually not complexed to snRNAs. . Length = 85

>gnl|CDD|240731 cd12285, RRM3_RBM39_like, RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score =  100 bits (251), Expect = 2e-25
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 695
            +I+KN+FDPA   +D     E ++D+ EECSK G V+ + +    PEGV  + FK  EA
Sbjct: 3   CVILKNMFDPAEETED-EWDDEIKEDVLEECSKFGPVEHIKVDKNSPEGVVYVKFKTVEA 61

Query: 696 ADACRELLNGRWFGQRQITAETWD 719
           A  C + LNGRWF  RQITAE  D
Sbjct: 62  AQKCIQALNGRWFDGRQITAEYVD 85

This subfamily corresponds to the RRM3 of RBM39, also termed hepatocellular carcinoma protein 1, or RNA-binding region-containing protein 2, or splicing factor HCC1, ia nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Based on the specific domain composition, RBM39 has been classified into a family of non-snRNP (small nuclear ribonucleoprotein) splicing factors that are usually not complexed to snRNAs. . Length = 85

>gnl|CDD|240726 cd12280, RRM_FET, RNA recognition motif in the FET family of RNA-binding proteins

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +Y+S LP D+T++   E+    G++ +D  T    IK+YTD  T+  KG+A  TY    +
Sbjct: 1   IYISGLPDDVTEDSLAELFGGIGIIKRDKRTWPPMIKIYTDKETE-PKGEATVTYDDPSA 59

Query: 278 VDLALSILDGYEIRGKKIKVE 298
              A+   +GYE RG KIKV 
Sbjct: 60  AQAAIEWFNGYEFRGNKIKVS 80

This subfamily corresponds to the RRM of FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA-binding proteins. This ubiquitously expressed family of similarly structured proteins predominantly localizing to the nuclear, includes FUS (also known as TLS or Pigpen or hnRNP P2), EWS (also known as EWSR1), TAF15 (also known as hTAFII68 or TAF2N or RPB56), and Drosophila Cabeza (also known as SARFH). The corresponding coding genes of these proteins are involved in deleterious genomic rearrangements with transcription factor genes in a variety of human sarcomas and acute leukemias. All FET proteins interact with each other and are therefore likely to be part of the very same protein complexes, which suggests a general bridging role for FET proteins coupling RNA transcription, processing, transport, and DNA repair. The FET proteins contain multiple copies of a degenerate hexapeptide repeat motif at the N-terminus. The C-terminal region consists of a conserved nuclear import and retention signal (C-NLS), a putative zinc-finger domain, and a conserved RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is flanked by 3 arginine-glycine-glycine (RGG) boxes. FUS and EWS might have similar sequence specificity; both bind preferentially to GGUG-containing RNAs. FUS has also been shown to bind strongly to human telomeric RNA and to small low-copy-number RNAs tethered to the promoter of cyclin D1. To date, nothing is known about the RNA binding specificity of TAF15. . Length = 81

>gnl|CDD|240726 cd12280, RRM_FET, RNA recognition motif in the FET family of RNA-binding proteins

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +Y+S LP D+T++   E+    G++ +D  T    IK+YTD  T+  KG+A  TY    +
Sbjct: 1   IYISGLPDDVTEDSLAELFGGIGIIKRDKRTWPPMIKIYTDKETE-PKGEATVTYDDPSA 59

Query: 563 VDLALSILDGYEIRGKKIKVE 583
              A+   +GYE RG KIKV 
Sbjct: 60  AQAAIEWFNGYEFRGNKIKVS 80

This subfamily corresponds to the RRM of FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA-binding proteins. This ubiquitously expressed family of similarly structured proteins predominantly localizing to the nuclear, includes FUS (also known as TLS or Pigpen or hnRNP P2), EWS (also known as EWSR1), TAF15 (also known as hTAFII68 or TAF2N or RPB56), and Drosophila Cabeza (also known as SARFH). The corresponding coding genes of these proteins are involved in deleterious genomic rearrangements with transcription factor genes in a variety of human sarcomas and acute leukemias. All FET proteins interact with each other and are therefore likely to be part of the very same protein complexes, which suggests a general bridging role for FET proteins coupling RNA transcription, processing, transport, and DNA repair. The FET proteins contain multiple copies of a degenerate hexapeptide repeat motif at the N-terminus. The C-terminal region consists of a conserved nuclear import and retention signal (C-NLS), a putative zinc-finger domain, and a conserved RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is flanked by 3 arginine-glycine-glycine (RGG) boxes. FUS and EWS might have similar sequence specificity; both bind preferentially to GGUG-containing RNAs. FUS has also been shown to bind strongly to human telomeric RNA and to small low-copy-number RNAs tethered to the promoter of cyclin D1. To date, nothing is known about the RNA binding specificity of TAF15. . Length = 81

>gnl|CDD|240820 cd12374, RRM_UHM_SPF45_PUF60, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 11/89 (12%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---PEGVAQIF--F 405
           +++++N+  P   D+D+      + ++ EEC K G V  V++H+      +   +IF  F
Sbjct: 3   ILVLRNMVTPGEIDEDL------KDEIEEECEKYGKVLNVIVHEVASSEADDAVRIFVEF 56

Query: 406 KEPEAADACRELLNGRWFGQRQITAETWD 434
            + + A      LNGR+FG R++TA  +D
Sbjct: 57  SDADEAIKAVRALNGRFFGGRKVTARFYD 85

This subfamily corresponds to the RRM found in UHM domain of 45 kDa-splicing factor (SPF45 or RBM17), poly(U)-binding-splicing factor PUF60 (FIR or Hfp or RoBP1 or Siah-BP1), and similar proteins. SPF45 is an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RRMs and a C-terminal UHM domain. . Length = 85

>gnl|CDD|240820 cd12374, RRM_UHM_SPF45_PUF60, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 11/89 (12%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---PEGVAQIF--F 690
           +++++N+  P   D+D+      + ++ EEC K G V  V++H+      +   +IF  F
Sbjct: 3   ILVLRNMVTPGEIDEDL------KDEIEEECEKYGKVLNVIVHEVASSEADDAVRIFVEF 56

Query: 691 KEPEAADACRELLNGRWFGQRQITAETWD 719
            + + A      LNGR+FG R++TA  +D
Sbjct: 57  SDADEAIKAVRALNGRFFGGRKVTARFYD 85

This subfamily corresponds to the RRM found in UHM domain of 45 kDa-splicing factor (SPF45 or RBM17), poly(U)-binding-splicing factor PUF60 (FIR or Hfp or RoBP1 or Siah-BP1), and similar proteins. SPF45 is an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RRMs and a C-terminal UHM domain. . Length = 85

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
            ++V NLP D T+EE  E+  K G V          ++L  D  T   KG A   +  +E
Sbjct: 1   TLFVGNLPPDTTEEELRELFSKFGKVES--------VRLVRDKETGKSKGFAFVEFESEE 52

Query: 277 SVDLALSILDGYEIRGKKIKV 297
             + AL  L+G E+ G+ +KV
Sbjct: 53  DAEKALEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
            ++V NLP D T+EE  E+  K G V          ++L  D  T   KG A   +  +E
Sbjct: 1   TLFVGNLPPDTTEEELRELFSKFGKVES--------VRLVRDKETGKSKGFAFVEFESEE 52

Query: 562 SVDLALSILDGYEIRGKKIKV 582
             + AL  L+G E+ G+ +KV
Sbjct: 53  DAEKALEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|241092 cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 14/92 (15%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQIF 404
           V++++N+  P   D D+      + ++ EEC K G V +V+++      ++  E + +IF
Sbjct: 3   VMVLRNMVGPEDLDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIF 56

Query: 405 --FKEPEAADACRELLNGRWFGQRQITAETWD 434
             F  P  A+   + LNGRWFG R++ AE +D
Sbjct: 57  VEFSLPSEAEKAIQALNGRWFGGRKVKAELYD 88

This subgroup corresponds to the RRM3 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1), an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. The research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 98

>gnl|CDD|241092 cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 14/92 (15%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQIF 689
           V++++N+  P   D D+      + ++ EEC K G V +V+++      ++  E + +IF
Sbjct: 3   VMVLRNMVGPEDLDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIF 56

Query: 690 --FKEPEAADACRELLNGRWFGQRQITAETWD 719
             F  P  A+   + LNGRWFG R++ AE +D
Sbjct: 57  VEFSLPSEAEKAIQALNGRWFGGRKVKAELYD 88

This subgroup corresponds to the RRM3 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1), an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. The research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 98

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           ++V NLP D T+E+  E+  K G +          +++  D   K  KG A   +   E 
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFGEIES--------VRIVRDKDGK-SKGFAFVEFESPED 51

Query: 278 VDLALSILDGYEIRGKKIKVE 298
            + AL  L+G E+ G+K+KV 
Sbjct: 52  AEKALEALNGKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           ++V NLP D T+E+  E+  K G +          +++  D   K  KG A   +   E 
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFGEIES--------VRIVRDKDGK-SKGFAFVEFESPED 51

Query: 563 VDLALSILDGYEIRGKKIKVE 583
            + AL  L+G E+ G+K+KV 
Sbjct: 52  AEKALEALNGKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240678 cd12232, RRM3_U2AF65, RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 351 VIIVKNLFDPALF--DKDVTLILEYQQDLREECSKCGHVKKVVL-----HDKHPEGVAQI 403
           V+ + N+  P     D++   ILE   D++EEC K G V  VV+           GV ++
Sbjct: 3   VLCLLNMVTPEELEDDEEYEEILE---DVKEECGKYGKVLSVVIPRPEAEGVDVPGVGKV 59

Query: 404 F--FKEPEAADACRELLNGRWFGQRQITAE 431
           F  F + E A   +  L GR F  R + A 
Sbjct: 60  FVEFADVEDAQKAQLALAGRKFDGRTVVAS 89

This subfamily corresponds to the RRM3 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 89

>gnl|CDD|240678 cd12232, RRM3_U2AF65, RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 636 VIIVKNLFDPALF--DKDVTLILEYQQDLREECSKCGHVKKVVL-----HDKHPEGVAQI 688
           V+ + N+  P     D++   ILE   D++EEC K G V  VV+           GV ++
Sbjct: 3   VLCLLNMVTPEELEDDEEYEEILE---DVKEECGKYGKVLSVVIPRPEAEGVDVPGVGKV 59

Query: 689 F--FKEPEAADACRELLNGRWFGQRQITAE 716
           F  F + E A   +  L GR F  R + A 
Sbjct: 60  FVEFADVEDAQKAQLALAGRKFDGRTVVAS 89

This subfamily corresponds to the RRM3 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 89

>gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           V+V N+P D T+E+ +E+  + G V+          +L TD  T   KG   C +   E+
Sbjct: 1   VFVGNIPYDATEEQLIEIFSEVGPVVS--------FRLVTDRDTGKPKGYGFCEFEDIET 52

Query: 278 VDLALSILDGYEIRGKKIKVERA 300
              A+  L+GYE  G+ ++V+ A
Sbjct: 53  AASAIRNLNGYEFNGRALRVDFA 75

This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75

>gnl|CDD|240844 cd12398, RRM_CSTF2_RNA15_like, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V+V N+P D T+E+ +E+  + G V+          +L TD  T   KG   C +   E+
Sbjct: 1   VFVGNIPYDATEEQLIEIFSEVGPVVS--------FRLVTDRDTGKPKGYGFCEFEDIET 52

Query: 563 VDLALSILDGYEIRGKKIKVERA 585
              A+  L+GYE  G+ ++V+ A
Sbjct: 53  AASAIRNLNGYEFNGRALRVDFA 75

This subfamily corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. The family also includes yeast ortholog mRNA 3'-end-processing protein RNA15 and similar proteins. RNA15 is a core subunit of cleavage factor IA (CFIA), an essential transcriptional 3'-end processing factor from Saccharomyces cerevisiae. RNA recognition by CFIA is mediated by an N-terminal RRM, which is contained in the RNA15 subunit of the complex. The RRM of RNA15 has a strong preference for GU-rich RNAs, mediated by a binding pocket that is entirely conserved in both yeast and vertebrate RNA15 orthologs. Length = 75

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 60.7 bits (146), Expect = 8e-10
 Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 151 SYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFD 210
           +   IE   +   KK      + +  E+ ++     E    +E      +    P     
Sbjct: 51  NSRKIESEISPPSKKRLLSSERKEENEREMEEQNDGERGYTKEFEEELFRSSESPKSRQK 110

Query: 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 270
             EE+  ++V NLP D+T+E+  E+ +K G V         +++L  D  T   +G A  
Sbjct: 111 SKEENNTLFVGNLPYDVTEEDLRELFKKFGPV--------KRVRLVRDRETGKSRGFAFV 162

Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKD 322
            +  +ES + A+  L+G E+ G+ ++V++A+   +  +           KK 
Sbjct: 163 EFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKL 214

Length = 306

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 34/228 (14%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           +   ++Y+ NLPL L +++  E+++  G        +     L  D  T   KG A C Y
Sbjct: 293 DSKDRIYIGNLPLYLGEDQIKELLESFG--------DLKAFNLIKDIATGLSKGYAFCEY 344

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
                 D+A++ L+G +    K+ V+RA            +             K   + 
Sbjct: 345 KDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN----QATIDTSNGMAPVTLLAKALSQS 400

Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ---QDLREECSKCGHVKK 389
           +      ++ G+ +K   V+ + NL    +   D+    EY+   +D++ E SK G +  
Sbjct: 401 IL-----QIGGKPTK---VVQLTNL----VTGDDLMDDEEYEEIYEDVKTEFSKYGPLIN 448

Query: 390 VVLHDKHP-----EGVAQIFFKEPEAADA--CRELLNGRWFGQRQITA 430
           +V+   +       GV ++F +  +   A    E +NGR F  R + A
Sbjct: 449 IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVA 496

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           ++V NLP D T+E+  ++  K G +          I++  D  T   KG A   +  +E 
Sbjct: 1   LFVGNLPPDTTEEDLKDLFSKFGPIES--------IRIVRDE-TGRSKGFAFVEFEDEED 51

Query: 278 VDLALSILDGYEIRGKKIK 296
            + AL  L+G E+ G++++
Sbjct: 52  AEKALEALNGKELGGRELR 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           ++V NLP D T+E+  ++  K G +          I++  D  T   KG A   +  +E 
Sbjct: 1   LFVGNLPPDTTEEDLKDLFSKFGPIES--------IRIVRDE-TGRSKGFAFVEFEDEED 51

Query: 563 VDLALSILDGYEIRGKKIK 581
            + AL  L+G E+ G++++
Sbjct: 52  AEKALEALNGKELGGRELR 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 34/224 (15%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           ++Y+ NLPL L +++  E+++  G        +     L  D  T   KG A C Y    
Sbjct: 297 RIYIGNLPLYLGEDQIKELLESFG--------DLKAFNLIKDIATGLSKGYAFCEYKDPS 348

Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW 621
             D+A++ L+G +    K+ V+RA            +             K   + +   
Sbjct: 349 VTDVAIAALNGKDTGDNKLHVQRACVGAN----QATIDTSNGMAPVTLLAKALSQSIL-- 402

Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ---QDLREECSKCGHVKKVVLH 678
              ++ G+ +K   V+ + NL    +   D+    EY+   +D++ E SK G +  +V+ 
Sbjct: 403 ---QIGGKPTK---VVQLTNL----VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452

Query: 679 DKHP-----EGVAQIFFKEPEAADA--CRELLNGRWFGQRQITA 715
             +       GV ++F +  +   A    E +NGR F  R + A
Sbjct: 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVA 496

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 59.9 bits (145), Expect = 3e-09
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
           +++ N+FDPA  +++     E   D++EECSK G V  + +  K+  G   + F   +AA
Sbjct: 365 LVLSNMFDPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423

Query: 412 DACRELLNGRWFGQRQITA 430
            A  + LNGR+FG + ITA
Sbjct: 424 LAAFQALNGRYFGGKMITA 442

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 59.9 bits (145), Expect = 3e-09
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696
           +++ N+FDPA  +++     E   D++EECSK G V  + +  K+  G   + F   +AA
Sbjct: 365 LVLSNMFDPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423

Query: 697 DACRELLNGRWFGQRQITA 715
            A  + LNGR+FG + ITA
Sbjct: 424 LAAFQALNGRYFGGKMITA 442

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|240978 cd12534, RRM_SARFH, RNA recognition motif in Drosophila melanogaster RNA-binding protein cabeza and similar proteins

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           V+VSNLP + T+++  E     G++  D  T + KI LY D  T + KG+A  TY    +
Sbjct: 1   VFVSNLPPNTTEQDLAEHFGSIGIIKIDKKTGKPKIWLYKDKDTGEPKGEATVTYDDPHA 60

Query: 278 VDLALSILDGYEIRGKKIKVERA 300
              A+   +  +  G  IKV  A
Sbjct: 61  ASAAIEWFNNKDFMGNTIKVSLA 83

This subgroup corresponds to the RRM in cabeza, also termed P19, or sarcoma-associated RNA-binding fly homolog (SARFH). It is a putative homolog of human RNA-binding proteins FUS (also termed TLS or Pigpen or hnRNP P2), EWS (also termed EWSR1), TAF15 (also termed hTAFII68 or TAF2N or RPB56), and belongs to the of the FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA- and DNA-binding proteins whose expression is altered in cancer. It is a nuclear RNA binding protein that may play an important role in the regulation of RNA metabolism during fly development. Cabeza contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 83

>gnl|CDD|240978 cd12534, RRM_SARFH, RNA recognition motif in Drosophila melanogaster RNA-binding protein cabeza and similar proteins

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V+VSNLP + T+++  E     G++  D  T + KI LY D  T + KG+A  TY    +
Sbjct: 1   VFVSNLPPNTTEQDLAEHFGSIGIIKIDKKTGKPKIWLYKDKDTGEPKGEATVTYDDPHA 60

Query: 563 VDLALSILDGYEIRGKKIKVERA 585
              A+   +  +  G  IKV  A
Sbjct: 61  ASAAIEWFNNKDFMGNTIKVSLA 83

This subgroup corresponds to the RRM in cabeza, also termed P19, or sarcoma-associated RNA-binding fly homolog (SARFH). It is a putative homolog of human RNA-binding proteins FUS (also termed TLS or Pigpen or hnRNP P2), EWS (also termed EWSR1), TAF15 (also termed hTAFII68 or TAF2N or RPB56), and belongs to the of the FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA- and DNA-binding proteins whose expression is altered in cancer. It is a nuclear RNA binding protein that may play an important role in the regulation of RNA metabolism during fly development. Cabeza contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 83

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 57.8 bits (139), Expect = 2e-08
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 20/143 (13%)

Query: 305 KGEAYDPKLKPKKKRKKDLEKLKKAQEKLF----DWRPDKMRGERSKNES-VIIVKNLFD 359
           K E    +L+PK     +   L   QE +       R   M+     N S VI+++N+  
Sbjct: 466 KKEKEGEELQPKLVMNSEDASLAS-QEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVT 524

Query: 360 PALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQIFFKEPEAADA 413
           P   D+ +      + ++REEC K G V +V+++      ++  E + +IF +  ++ + 
Sbjct: 525 PQDIDEFL------EGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEV 578

Query: 414 CR--ELLNGRWFGQRQITAETWD 434
            R    L+GR+FG R + AE +D
Sbjct: 579 DRAKAALDGRFFGGRTVVAEAYD 601

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 57.8 bits (139), Expect = 2e-08
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 20/143 (13%)

Query: 590 KGEAYDPKLKPKKKRKKDLEKLKKAQEKLF----DWRPDKMRGERSKNES-VIIVKNLFD 644
           K E    +L+PK     +   L   QE +       R   M+     N S VI+++N+  
Sbjct: 466 KKEKEGEELQPKLVMNSEDASLAS-QEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVT 524

Query: 645 PALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQIFFKEPEAADA 698
           P   D+ +      + ++REEC K G V +V+++      ++  E + +IF +  ++ + 
Sbjct: 525 PQDIDEFL------EGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEV 578

Query: 699 CR--ELLNGRWFGQRQITAETWD 719
            R    L+GR+FG R + AE +D
Sbjct: 579 DRAKAALDGRFFGGRTVVAEAYD 601

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEP 408
           + V NL        D T     ++DLRE  SK G ++ V +    D   +G A + F+ P
Sbjct: 1   LFVGNL------PPDTT-----EEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESP 49

Query: 409 EAADACRELLNGRWFGQRQITAE 431
           E A+   E LNG+    R++   
Sbjct: 50  EDAEKALEALNGKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEP 693
           + V NL        D T     ++DLRE  SK G ++ V +    D   +G A + F+ P
Sbjct: 1   LFVGNL------PPDTT-----EEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESP 49

Query: 694 EAADACRELLNGRWFGQRQITAE 716
           E A+   E LNG+    R++   
Sbjct: 50  EDAEKALEALNGKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|240695 cd12249, RRM1_hnRNPR_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
            +V+V  +P DL ++E V + +K G +         +++L  D    + +G A  TY  K
Sbjct: 2   CEVFVGKIPRDLFEDELVPLFEKAGPI--------YELRLMMDFSGLN-RGYAFVTYTNK 52

Query: 276 ESVDLALSILDGYEIR-GKKIKVER 299
           E+   A+  L  YEIR GK++ V  
Sbjct: 53  EAAQRAVKQLHNYEIRPGKRLGVCI 77

This subfamily corresponds to the RRM1 in hnRNP R, hnRNP Q, APOBEC-1 complementation factor (ACF), and dead end protein homolog 1 (DND1). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically binds mRNAs with a preference for poly(U) stretches. It has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone, and play a key role in cell growth and differentiation. DND1 is essential for maintaining viable germ cells in vertebrates. It interacts with the 3'-untranslated region (3'-UTR) of multiple messenger RNAs (mRNAs) and prevents micro-RNA (miRNA) mediated repression of mRNA. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members in this family, except for DND1, contain three conserved RNA recognition motifs (RRMs); DND1 harbors only two RRMs. . Length = 78

>gnl|CDD|240695 cd12249, RRM1_hnRNPR_like, RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
            +V+V  +P DL ++E V + +K G +         +++L  D    + +G A  TY  K
Sbjct: 2   CEVFVGKIPRDLFEDELVPLFEKAGPI--------YELRLMMDFSGLN-RGYAFVTYTNK 52

Query: 561 ESVDLALSILDGYEIR-GKKIKVER 584
           E+   A+  L  YEIR GK++ V  
Sbjct: 53  EAAQRAVKQLHNYEIRPGKRLGVCI 77

This subfamily corresponds to the RRM1 in hnRNP R, hnRNP Q, APOBEC-1 complementation factor (ACF), and dead end protein homolog 1 (DND1). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically binds mRNAs with a preference for poly(U) stretches. It has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone, and play a key role in cell growth and differentiation. DND1 is essential for maintaining viable germ cells in vertebrates. It interacts with the 3'-untranslated region (3'-UTR) of multiple messenger RNAs (mRNAs) and prevents micro-RNA (miRNA) mediated repression of mRNA. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members in this family, except for DND1, contain three conserved RNA recognition motifs (RRMs); DND1 harbors only two RRMs. . Length = 78

>gnl|CDD|223796 COG0724, COG0724, RNA-binding proteins (RRM domain) [General function prediction only]

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 8/128 (6%)

Query: 480 KLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIK 539
           + +  +  +    + K  +EN  ++V NLP D+T+E+  E+ +K G V +        ++
Sbjct: 95  EEELFRSSESPKSRQKSKEENNTLFVGNLPYDVTEEDLRELFKKFGPVKR--------VR 146

Query: 540 LYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLK 599
           L  D  T   +G A   +  +ES + A+  L+G E+ G+ ++V++A+   +  +      
Sbjct: 147 LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNL 206

Query: 600 PKKKRKKD 607
                KK 
Sbjct: 207 DASFAKKL 214

Length = 306

>gnl|CDD|240977 cd12533, RRM_EWS, RNA recognition motif in vertebrate Ewing Sarcoma Protein (EWS)

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +YV  L  ++T EE  +  + CG+V  +  T Q  + +YTD  T   KGDA  +Y    S
Sbjct: 3   IYVQGLNDNVTLEELADFFKHCGVVKINKRTGQPMVNIYTDKETGKPKGDATVSYEDPPS 62

Query: 278 VDLALSILDGYEIRGKKIKV 297
              A+   DG + +G K+KV
Sbjct: 63  AKAAVEWFDGKDFQGSKLKV 82

This subgroup corresponds to the RRM of EWS, also termed Ewing sarcoma breakpoint region 1 protein, a member of the FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA- and DNA-binding proteins whose expression is altered in cancer. It is a multifunctional protein and may play roles in transcription and RNA processing. EWS is involved in transcriptional regulation by interacting with the preinitiation complex TFIID and the RNA polymerase II (RNAPII) complexes. It is also associated with splicing factors, such as the U1 snRNP protein U1C, suggesting its implication in pre-mRNA splicing. Additionally, EWS has been shown to regulate DNA damage-induced alternative splicing (AS). Like other members in the FET family, EWS contains an N-terminal Ser, Gly, Gln and Tyr-rich region composed of multiple copies of a degenerate hexapeptide repeat motif. The C-terminal region consists of a conserved nuclear import and retention signal (C-NLS), a C2/C2 zinc-finger motif, a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and at least 1 arginine-glycine-glycine (RGG)-repeat region. EWS specifically binds to poly G and poly U RNA. It also binds to the proximal-element DNA of the macrophage-specific promoter of the CSF-1 receptor gene. . Length = 84

>gnl|CDD|240977 cd12533, RRM_EWS, RNA recognition motif in vertebrate Ewing Sarcoma Protein (EWS)

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +YV  L  ++T EE  +  + CG+V  +  T Q  + +YTD  T   KGDA  +Y    S
Sbjct: 3   IYVQGLNDNVTLEELADFFKHCGVVKINKRTGQPMVNIYTDKETGKPKGDATVSYEDPPS 62

Query: 563 VDLALSILDGYEIRGKKIKV 582
              A+   DG + +G K+KV
Sbjct: 63  AKAAVEWFDGKDFQGSKLKV 82

This subgroup corresponds to the RRM of EWS, also termed Ewing sarcoma breakpoint region 1 protein, a member of the FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA- and DNA-binding proteins whose expression is altered in cancer. It is a multifunctional protein and may play roles in transcription and RNA processing. EWS is involved in transcriptional regulation by interacting with the preinitiation complex TFIID and the RNA polymerase II (RNAPII) complexes. It is also associated with splicing factors, such as the U1 snRNP protein U1C, suggesting its implication in pre-mRNA splicing. Additionally, EWS has been shown to regulate DNA damage-induced alternative splicing (AS). Like other members in the FET family, EWS contains an N-terminal Ser, Gly, Gln and Tyr-rich region composed of multiple copies of a degenerate hexapeptide repeat motif. The C-terminal region consists of a conserved nuclear import and retention signal (C-NLS), a C2/C2 zinc-finger motif, a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and at least 1 arginine-glycine-glycine (RGG)-repeat region. EWS specifically binds to poly G and poly U RNA. It also binds to the proximal-element DNA of the macrophage-specific promoter of the CSF-1 receptor gene. . Length = 84

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           ++V N+    T EE  E  + CG +         +I +  D +T   KG A   ++ K S
Sbjct: 2   IFVGNVDYGTTPEELQEHFKSCGTI--------NRITILCDKFTGQPKGFAYIEFLDKSS 53

Query: 278 VDLALSILDGYEIRGKKIKV 297
           V+ AL  L+  E RG++IKV
Sbjct: 54  VENALL-LNESEFRGRQIKV 72

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           ++V N+    T EE  E  + CG +         +I +  D +T   KG A   ++ K S
Sbjct: 2   IFVGNVDYGTTPEELQEHFKSCGTI--------NRITILCDKFTGQPKGFAYIEFLDKSS 53

Query: 563 VDLALSILDGYEIRGKKIKV 582
           V+ AL  L+  E RG++IKV
Sbjct: 54  VENALL-LNESEFRGRQIKV 72

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

>gnl|CDD|241091 cd12647, RRM_UHM_SPF45, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEGVAQIF-- 404
           V++++N+  P   D+D+      + +++EECSK G V KV++ +       +   +IF  
Sbjct: 4   VVLLRNMVGPGEVDEDL------EPEVKEECSKYGKVTKVLIFEIPGASPDDEAVRIFVE 57

Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWD 434
           F+  E+A      LNGR+FG R + A  +D
Sbjct: 58  FERVESAIKAVVDLNGRFFGGRTVKASFYD 87

This subgroup corresponds to the RRM of SPF45, also termed RNA-binding motif protein 17 (RBM17), an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. . Length = 96

>gnl|CDD|241091 cd12647, RRM_UHM_SPF45, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEGVAQIF-- 689
           V++++N+  P   D+D+      + +++EECSK G V KV++ +       +   +IF  
Sbjct: 4   VVLLRNMVGPGEVDEDL------EPEVKEECSKYGKVTKVLIFEIPGASPDDEAVRIFVE 57

Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWD 719
           F+  E+A      LNGR+FG R + A  +D
Sbjct: 58  FERVESAIKAVVDLNGRFFGGRTVKASFYD 87

This subgroup corresponds to the RRM of SPF45, also termed RNA-binding motif protein 17 (RBM17), an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. . Length = 96

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH---PEGVAQIFFK 406
            + V NL        D T     +++LRE  SK G V+ V ++ DK     +G A + F+
Sbjct: 1   TLFVGNL------PPDTT-----EEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFE 49

Query: 407 EPEAADACRELLNGRWFGQRQIT 429
             E A+   E LNG+    R + 
Sbjct: 50  SEEDAEKALEALNGKELDGRPLK 72

Length = 73

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH---PEGVAQIFFK 691
            + V NL        D T     +++LRE  SK G V+ V ++ DK     +G A + F+
Sbjct: 1   TLFVGNL------PPDTT-----EEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFE 49

Query: 692 EPEAADACRELLNGRWFGQRQIT 714
             E A+   E LNG+    R + 
Sbjct: 50  SEEDAEKALEALNGKELDGRPLK 72

Length = 73

>gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
            +YV NLP ++T+E+  ++  + G V           ++ TD  T   +G         E
Sbjct: 1   NLYVGNLPYNVTEEDLKDLFGQFGEVTS--------ARVITDRETGRSRGFGFVEMETAE 52

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
             + A+  L+G +  G+ + V  A+
Sbjct: 53  EANAAIEKLNGTDFGGRTLTVNEAR 77

This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78

>gnl|CDD|240845 cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
            +YV NLP ++T+E+  ++  + G V           ++ TD  T   +G         E
Sbjct: 1   NLYVGNLPYNVTEEDLKDLFGQFGEVTS--------ARVITDRETGRSRGFGFVEMETAE 52

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
             + A+  L+G +  G+ + V  A+
Sbjct: 53  EANAAIEKLNGTDFGGRTLTVNEAR 77

This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. . Length = 78

>gnl|CDD|240828 cd12382, RRM_RBMX_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
            K++VS L    T++E   +  K G V    +   MK     DP T + +G    T+   
Sbjct: 2   NKLFVSGLSTRTTEKELEALFSKFGRV---EEVLLMK-----DPETGESRGFGFVTFESV 53

Query: 276 ESVDLALSILDGYEIRGKKIKVERAK 301
           E  D A+  L+G E+ G+ IKVE+AK
Sbjct: 54  EDADAAIRDLNGKELEGRVIKVEKAK 79

This subfamily corresponds to the RRM domain of hnRNP G, also termed glycoprotein p43 or RBMX, an RNA-binding motif protein located on the X chromosome. It is expressed ubiquitously and has been implicated in the splicing control of several pre-mRNAs. Moreover, hnRNP G may function as a regulator of transcription for SREBP-1c and GnRH1. Research has shown that hnRNP G may also act as a tumor-suppressor since it upregulates the Txnip gene and promotes the fidelity of DNA end-joining activity. In addition, hnRNP G appears to play a critical role in proper neural development of zebrafish and frog embryos. The family also includes several paralogs of hnRNP G, such as hRBMY and hnRNP G-T (also termed RNA-binding motif protein, X-linked-like-2). Both, hRBMY and hnRNP G-T, are exclusively expressed in testis and critical for male fertility. Like hnRNP G, hRBMY and hnRNP G-T interact with factors implicated in the regulation of pre-mRNA splicing, such as hTra2-beta1 and T-STAR. Although members in this family share a high conserved N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), they appear to recognize different RNA targets. For instance, hRBMY interacts specifically with a stem-loop structure in which the loop is formed by the sequence CA/UCAA. In contrast, hnRNP G associates with single stranded RNA sequences containing a CCA/C motif. In addition to the RRM, hnRNP G contains a nascent transcripts targeting domain (NTD) in the middle region and a novel auxiliary RNA-binding domain (RBD) in its C-terminal region. The C-terminal RBD exhibits distinct RNA binding specificity, and would play a critical role in the regulation of alternative splicing by hnRNP G. . Length = 80

>gnl|CDD|240828 cd12382, RRM_RBMX_like, RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
            K++VS L    T++E   +  K G V    +   MK     DP T + +G    T+   
Sbjct: 2   NKLFVSGLSTRTTEKELEALFSKFGRV---EEVLLMK-----DPETGESRGFGFVTFESV 53

Query: 561 ESVDLALSILDGYEIRGKKIKVERAK 586
           E  D A+  L+G E+ G+ IKVE+AK
Sbjct: 54  EDADAAIRDLNGKELEGRVIKVEKAK 79

This subfamily corresponds to the RRM domain of hnRNP G, also termed glycoprotein p43 or RBMX, an RNA-binding motif protein located on the X chromosome. It is expressed ubiquitously and has been implicated in the splicing control of several pre-mRNAs. Moreover, hnRNP G may function as a regulator of transcription for SREBP-1c and GnRH1. Research has shown that hnRNP G may also act as a tumor-suppressor since it upregulates the Txnip gene and promotes the fidelity of DNA end-joining activity. In addition, hnRNP G appears to play a critical role in proper neural development of zebrafish and frog embryos. The family also includes several paralogs of hnRNP G, such as hRBMY and hnRNP G-T (also termed RNA-binding motif protein, X-linked-like-2). Both, hRBMY and hnRNP G-T, are exclusively expressed in testis and critical for male fertility. Like hnRNP G, hRBMY and hnRNP G-T interact with factors implicated in the regulation of pre-mRNA splicing, such as hTra2-beta1 and T-STAR. Although members in this family share a high conserved N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), they appear to recognize different RNA targets. For instance, hRBMY interacts specifically with a stem-loop structure in which the loop is formed by the sequence CA/UCAA. In contrast, hnRNP G associates with single stranded RNA sequences containing a CCA/C motif. In addition to the RRM, hnRNP G contains a nascent transcripts targeting domain (NTD) in the middle region and a novel auxiliary RNA-binding domain (RBD) in its C-terminal region. The C-terminal RBD exhibits distinct RNA binding specificity, and would play a critical role in the regulation of alternative splicing by hnRNP G. . Length = 80

>gnl|CDD|241115 cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           V+V N+P + T+E+  ++  + G V+          +L  D  T   KG   C Y  +E+
Sbjct: 1   VFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYKDQET 52

Query: 278 VDLALSILDGYEIRGKKIKVERA 300
              A+  L+GYE+ G++++V+ A
Sbjct: 53  ALSAMRNLNGYELNGRQLRVDNA 75

This subgroup corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. . Length = 75

>gnl|CDD|241115 cd12671, RRM_CSTF2_CSTF2T, RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V+V N+P + T+E+  ++  + G V+          +L  D  T   KG   C Y  +E+
Sbjct: 1   VFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYKDQET 52

Query: 563 VDLALSILDGYEIRGKKIKVERA 585
              A+  L+GYE+ G++++V+ A
Sbjct: 53  ALSAMRNLNGYELNGRQLRVDNA 75

This subgroup corresponds to the RRM domain of CSTF2, its tau variant and eukaryotic homologs. CSTF2, also termed cleavage stimulation factor 64 kDa subunit (CstF64), is the vertebrate conterpart of yeast mRNA 3'-end-processing protein RNA15. It is expressed in all somatic tissues and is one of three cleavage stimulatory factor (CstF) subunits required for polyadenylation. CstF64 contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a CstF77-binding domain, a repeated MEARA helical region and a conserved C-terminal domain reported to bind the transcription factor PC-4. During polyadenylation, CstF interacts with the pre-mRNA through the RRM of CstF64 at U- or GU-rich sequences within 10 to 30 nucleotides downstream of the cleavage site. CSTF2T, also termed tauCstF64, is a paralog of the X-linked cleavage stimulation factor CstF64 protein that supports polyadenylation in most somatic cells. It is expressed during meiosis and subsequent haploid differentiation in a more limited set of tissues and cell types, largely in meiotic and postmeiotic male germ cells, and to a lesser extent in brain. The loss of CSTF2T will cause male infertility, as it is necessary for spermatogenesis and fertilization. Moreover, CSTF2T is required for expression of genes involved in morphological differentiation of spermatids, as well as for genes having products that function during interaction of motile spermatozoa with eggs. It promotes germ cell-specific patterns of polyadenylation by using its RRM to bind to different sequence elements downstream of polyadenylation sites than does CstF64. . Length = 75

>gnl|CDD|240926 cd12482, RRM1_hnRNPR, RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T+V+V  +P DL ++E V + +K G +          ++L  DP +   +G A  T+  K
Sbjct: 2   TEVFVGKIPRDLYEDELVPLFEKAGPIWD--------LRLMMDPLSGQNRGYAFITFCGK 53

Query: 276 ESVDLALSILDGYEIR-GKKIKV 297
           E+   A+ + D YEIR GK + V
Sbjct: 54  EAAQEAVKLCDNYEIRPGKHLGV 76

This subgroup corresponds to the RRM1 of hnRNP R, which is a ubiquitously expressed nuclear RNA-binding protein that specifically binds mRNAs with a preference for poly(U) stretches. Upon binding of RNA, hnRNP R forms oligomers, most probably dimers. hnRNP R has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. It is predominantly located in axons of motor neurons and to a much lower degree in sensory axons. In axons of motor neurons, it also functions as a cytosolic protein and interacts with wild type of survival motor neuron (SMN) proteins directly, further providing a molecular link between SMN and the spliceosome. Moreover, hnRNP R plays an important role in neural differentiation and development, and in retinal development and light-elicited cellular activities. hnRNP R contains an acidic auxiliary N-terminal region, followed by two well defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; it binds RNA through its RRM domains. . Length = 79

>gnl|CDD|240926 cd12482, RRM1_hnRNPR, RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein R (hnRNP R)

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           T+V+V  +P DL ++E V + +K G +          ++L  DP +   +G A  T+  K
Sbjct: 2   TEVFVGKIPRDLYEDELVPLFEKAGPIWD--------LRLMMDPLSGQNRGYAFITFCGK 53

Query: 561 ESVDLALSILDGYEIR-GKKIKV 582
           E+   A+ + D YEIR GK + V
Sbjct: 54  EAAQEAVKLCDNYEIRPGKHLGV 76

This subgroup corresponds to the RRM1 of hnRNP R, which is a ubiquitously expressed nuclear RNA-binding protein that specifically binds mRNAs with a preference for poly(U) stretches. Upon binding of RNA, hnRNP R forms oligomers, most probably dimers. hnRNP R has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. It is predominantly located in axons of motor neurons and to a much lower degree in sensory axons. In axons of motor neurons, it also functions as a cytosolic protein and interacts with wild type of survival motor neuron (SMN) proteins directly, further providing a molecular link between SMN and the spliceosome. Moreover, hnRNP R plays an important role in neural differentiation and development, and in retinal development and light-elicited cellular activities. hnRNP R contains an acidic auxiliary N-terminal region, followed by two well defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; it binds RNA through its RRM domains. . Length = 79

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 64/269 (23%), Positives = 106/269 (39%), Gaps = 80/269 (29%)

Query: 488 KKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYT 542
           KK   +    ++ T +YV NL   + +++  E+  K G      VMKD            
Sbjct: 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRS------- 218

Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEI----RGKKIKVERAKFTMKGEAYDPKL 598
                  +G A   + K E    A+  ++G +I     GKK+ V RA             
Sbjct: 219 -------RGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA------------- 258

Query: 599 KPKKKRKKDLEKL--KKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656
           + + +R+ +L +   +  QE          R  +++    + VKN  D  + D       
Sbjct: 259 QKRAEREAELRRKFEELQQE----------RKMKAQG-VNLYVKN-LDDTVTD------- 299

Query: 657 EYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIF----FKEPEAADACRELLNGRWFGQ 710
              + LRE  S+CG +   KV+L +K   GV++ F    F  PE A+     ++GR  G 
Sbjct: 300 ---EKLRELFSECGEITSAKVMLDEK---GVSRGFGFVCFSNPEEANRAVTEMHGRMLG- 352

Query: 711 RQITAETWDGKTRY-KIQETAEEREARLK 738
                    GK  Y  + +  E+R A L+
Sbjct: 353 ---------GKPLYVALAQRKEQRRAHLQ 372

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 66/279 (23%), Positives = 109/279 (39%), Gaps = 86/279 (30%)

Query: 193 EKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVD 247
            + +   +R+  P K F      T +YV NL   + +++  E+  K G      VMKD  
Sbjct: 162 GRFIKKHEREAAPLKKF------TNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS 215

Query: 248 TNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI----RGKKIKVERAKFT 303
                            +G A   + K E    A+  ++G +I     GKK+ V RA   
Sbjct: 216 GRS--------------RGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA--- 258

Query: 304 MKGEAYDPKLKPKKKRKKDLEKL--KKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPA 361
                     + + +R+ +L +   +  QE          R  +++    + VKN  D  
Sbjct: 259 ----------QKRAEREAELRRKFEELQQE----------RKMKAQG-VNLYVKN-LDDT 296

Query: 362 LFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIF----FKEPEAADACR 415
           + D          + LRE  S+CG +   KV+L +K   GV++ F    F  PE A+   
Sbjct: 297 VTD----------EKLRELFSECGEITSAKVMLDEK---GVSRGFGFVCFSNPEEANRAV 343

Query: 416 ELLNGRWFGQRQITAETWDGKTRY-KIQETAEEREARLK 453
             ++GR  G          GK  Y  + +  E+R A L+
Sbjct: 344 TEMHGRMLG----------GKPLYVALAQRKEQRRAHLQ 372

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|240733 cd12287, RRM_U2AF35_like, RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35) and similar proteins

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 375 QDLREECSKCGHVKKVVLHDK---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
           +D+  E S+ G ++ +V+ D    H  G   + F+  E A+A  + LNGR++  R +  E
Sbjct: 40  EDVFLELSRFGEIEDLVVCDNLGDHLLGNVYVKFETEEDAEAALQALNGRYYAGRPLYPE 99

This subfamily corresponds to the RRM in U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF) which has been implicated in the recruitment of U2 snRNP to pre-mRNAs. It is a highly conserved heterodimer composed of large and small subunits; this family includes the small subunit of U2AF (U2AF35 or U2AF1) and U2AF 35 kDa subunit B (U2AF35B or C3H60). U2AF35 directly binds to the 3' splice site of the conserved AG dinucleotide and performs multiple functions in the splicing process in a substrate-specific manner. It promotes U2 snRNP binding to the branch-point sequences of introns through association with the large subunit of U2AF (U2AF65 or U2AF2). Although the biological role of U2AF35B remains unclear, it shows high sequence homolgy to U2AF35, which contains two N-terminal zinc fingers, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal arginine/serine (SR) -rich segment interrupted by glycines. In contrast to U2AF35, U2AF35B has a plant-specific conserved C-terminal region containing SERE motif(s), which may have an important function specific to higher plants. . Length = 102

>gnl|CDD|240733 cd12287, RRM_U2AF35_like, RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35) and similar proteins

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 660 QDLREECSKCGHVKKVVLHDK---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
           +D+  E S+ G ++ +V+ D    H  G   + F+  E A+A  + LNGR++  R +  E
Sbjct: 40  EDVFLELSRFGEIEDLVVCDNLGDHLLGNVYVKFETEEDAEAALQALNGRYYAGRPLYPE 99

This subfamily corresponds to the RRM in U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF) which has been implicated in the recruitment of U2 snRNP to pre-mRNAs. It is a highly conserved heterodimer composed of large and small subunits; this family includes the small subunit of U2AF (U2AF35 or U2AF1) and U2AF 35 kDa subunit B (U2AF35B or C3H60). U2AF35 directly binds to the 3' splice site of the conserved AG dinucleotide and performs multiple functions in the splicing process in a substrate-specific manner. It promotes U2 snRNP binding to the branch-point sequences of introns through association with the large subunit of U2AF (U2AF65 or U2AF2). Although the biological role of U2AF35B remains unclear, it shows high sequence homolgy to U2AF35, which contains two N-terminal zinc fingers, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal arginine/serine (SR) -rich segment interrupted by glycines. In contrast to U2AF35, U2AF35B has a plant-specific conserved C-terminal region containing SERE motif(s), which may have an important function specific to higher plants. . Length = 102

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +YV NLP  +T+E+  E     G V        +++    D      +G A   +   E 
Sbjct: 1   LYVRNLPPSVTEEDLREFFSPYGKV------EGVRLVRNKDR----PRGFAFVEFASPED 50

Query: 278 VDLALSILDGYEIRGKKIK 296
            + AL  L+G  + G+ ++
Sbjct: 51  AEAALKKLNGLVLDGRTLR 69

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +YV NLP  +T+E+  E     G V        +++    D      +G A   +   E 
Sbjct: 1   LYVRNLPPSVTEEDLREFFSPYGKV------EGVRLVRNKDR----PRGFAFVEFASPED 50

Query: 563 VDLALSILDGYEIRGKKIK 581
            + AL  L+G  + G+ ++
Sbjct: 51  AEAALKKLNGLVLDGRTLR 69

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 13/79 (16%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL--HDKHPEGVAQIFFKEPE 409
           + V+NL         VT      +DLRE  S  G V+ V L  +   P G A + F  PE
Sbjct: 1   LYVRNL------PPSVTE-----EDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPE 49

Query: 410 AADACRELLNGRWFGQRQI 428
            A+A  + LNG     R +
Sbjct: 50  DAEAALKKLNGLVLDGRTL 68

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|222631 pfam14259, RRM_6, RNA recognition motif (a

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 13/79 (16%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL--HDKHPEGVAQIFFKEPE 694
           + V+NL         VT      +DLRE  S  G V+ V L  +   P G A + F  PE
Sbjct: 1   LYVRNL------PPSVTE-----EDLREFFSPYGKVEGVRLVRNKDRPRGFAFVEFASPE 49

Query: 695 AADACRELLNGRWFGQRQI 713
            A+A  + LNG     R +
Sbjct: 50  DAEAALKKLNGLVLDGRTL 68

k.a. RRM, RBD, or RNP domain). Length = 69

>gnl|CDD|240979 cd12535, RRM_FUS_TAF15, RNA recognition motif in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 27/84 (32%), Positives = 41/84 (48%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +N  ++V  L  D+T E   +  ++ G++  +  T Q  I LYTD  T   KG+A  ++ 
Sbjct: 1   DNNTIFVQGLGEDVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 60

Query: 559 KKESVDLALSILDGYEIRGKKIKV 582
              S   A+   DG E  G  IKV
Sbjct: 61  DPPSAKAAIDWFDGKEFSGNPIKV 84

This subgroup corresponds to the RRM of FUS and TAF15. FUS (TLS or Pigpen or hnRNP P2), also termed 75 kDa DNA-pairing protein (POMp75), or oncoprotein TLS (Translocated in liposarcoma), is a member of the FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA- and DNA-binding proteins whose expression is altered in cancer. It is a multi-functional protein and has been implicated in pre-mRNA splicing, chromosome stability, cell spreading, and transcription. FUS was originally identified in human myxoid and round cell liposarcomas as an oncogenic fusion with the stress-induced DNA-binding transcription factor CHOP (CCAAT enhancer-binding homologous protein) and later as hnRNP P2, a component of hnRNP H complex assembled on pre-mRNA. It can form ternary complexes with hnRNP A1 and hnRNP C1/C2. Additional research indicates that FUS binds preferentially to GGUG-containing RNAs. In the presence of Mg2+, it can bind both single- and double-stranded DNA (ssDNA/dsDNA) and promote ATP-independent annealing of complementary ssDNA and D-loop formation in superhelical dsDNA. FUS has been shown to be recruited by single stranded noncoding RNAs to the regulatory regions of target genes such as cyclin D1, where it represses transcription by disrupting complex formation. TAF15 (TAFII68), also termed TATA-binding protein-associated factor 2N (TAF2N), or RNA-binding protein 56 (RBP56), originally identified as a TAF in the general transcription initiation TFIID complex, is a novel RNA/ssDNA-binding protein with homology to the proto-oncoproteins FUS and EWS (also termed EWSR1), belonging to the FET family as well. TAF15 likely functions in RNA polymerase II (RNAP II) transcription by interacting with TFIID and subunits of RNAP II itself. TAF15 is also associated with U1 snRNA, chromatin and RNA, in a complex distinct from the Sm-containing U1 snRNP that functions in splicing. Like other members in the FET family, both FUS and TAF15 contain an N-terminal Ser, Gly, Gln and Tyr-rich region composed of multiple copies of a degenerate hexapeptide repeat motif. The C-terminal region consists of a conserved nuclear import and retention signal (C-NLS), a C2/C2 zinc-finger motif, a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and at least 1 arginine-glycine-glycine (RGG)-repeat region. . Length = 86

>gnl|CDD|240846 cd12400, RRM_Nop6, RNA recognition motif in Saccharomyces cerevisiae nucleolar protein 6 (Nop6) and similar proteins

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           ++V NLP D T E+ +   +  G            ++L TD  T   KG A   +   E+
Sbjct: 3   LFVGNLPYDTTAEDLLAHFKNAGAPPS--------VRLLTDKKTGKSKGCAFVEFDTAEA 54

Query: 278 VDLALSILDGYEIRGKKIKVE 298
           +  AL  L    ++G+KI VE
Sbjct: 55  MTKALK-LHHTLLKGRKINVE 74

This subfamily corresponds to the RRM of Nop6, also known as Ydl213c, a component of 90S pre-ribosomal particles in yeast S. cerevisiae. It is enriched in the nucleolus and is required for 40S ribosomal subunit biogenesis. Nop6 is a non-essential putative RNA-binding protein with two N-terminal putative nuclear localisation sequences (NLS-1 and NLS-2) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It binds to the pre-rRNA early during transcription and plays an essential role in pre-rRNA processing. . Length = 74

>gnl|CDD|240846 cd12400, RRM_Nop6, RNA recognition motif in Saccharomyces cerevisiae nucleolar protein 6 (Nop6) and similar proteins

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           ++V NLP D T E+ +   +  G            ++L TD  T   KG A   +   E+
Sbjct: 3   LFVGNLPYDTTAEDLLAHFKNAGAPPS--------VRLLTDKKTGKSKGCAFVEFDTAEA 54

Query: 563 VDLALSILDGYEIRGKKIKVE 583
           +  AL  L    ++G+KI VE
Sbjct: 55  MTKALK-LHHTLLKGRKINVE 74

This subfamily corresponds to the RRM of Nop6, also known as Ydl213c, a component of 90S pre-ribosomal particles in yeast S. cerevisiae. It is enriched in the nucleolus and is required for 40S ribosomal subunit biogenesis. Nop6 is a non-essential putative RNA-binding protein with two N-terminal putative nuclear localisation sequences (NLS-1 and NLS-2) and an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It binds to the pre-rRNA early during transcription and plays an essential role in pre-rRNA processing. . Length = 74

>gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 219 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 278
           YV NL  ++T+++   + +  G +          ++L  DP T   KG     +   E  
Sbjct: 2   YVGNLHFNITEDDLRGIFEPFGEIEF--------VQLQRDPETGRSKGYGFIQFADAEDA 53

Query: 279 DLALSILDGYEIRGKKIKV 297
             AL  L+G+E+ G+ IKV
Sbjct: 54  KKALEQLNGFELAGRPIKV 72

This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|240730 cd12284, RRM2_RBM23_RBM39, RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 563
           YV NL  ++T+++   + +  G +          ++L  DP T   KG     +   E  
Sbjct: 2   YVGNLHFNITEDDLRGIFEPFGEIEF--------VQLQRDPETGRSKGYGFIQFADAEDA 53

Query: 564 DLALSILDGYEIRGKKIKV 582
             AL  L+G+E+ G+ IKV
Sbjct: 54  KKALEQLNGFELAGRPIKV 72

This subfamily corresponds to the RRM2 of RBM39 (also termed HCC1), a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|240927 cd12483, RRM1_hnRNPQ, RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T+++V  +P DL ++E V + +K G +          ++L  DP T   +G A  T+  K
Sbjct: 2   TEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LRLMMDPLTGLNRGYAFVTFCTK 53

Query: 276 ESVDLALSILDGYEIR-GKKIKV 297
           E+   A+ + + +EIR GK I V
Sbjct: 54  EAAQEAVKLYNNHEIRPGKHIGV 76

This subgroup corresponds to the RRM1 of hnRNP Q, also termed glycine- and tyrosine-rich RNA-binding protein (GRY-RBP), or NS1-associated protein 1 (NASP1), or synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP). It is a ubiquitously expressed nuclear RNA-binding protein identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome. As an alternatively spliced version of NSAP, it acts as an interaction partner of a multifunctional protein required for viral replication, and is implicated in the regulation of specific mRNA transport. hnRNP Q has also been identified as SYNCRIP, a dual functional protein participating in both viral RNA replication and translation. As a synaptotagmin-binding protein, hnRNP Q plays a putative role in organelle-based mRNA transport along the cytoskeleton. Moreover, hnRNP Q has been found in protein complexes involved in translationally coupled mRNA turnover and mRNA splicing. It functions as a wild-type survival motor neuron (SMN)-binding protein that may participate in pre-mRNA splicing and modulate mRNA transport along microtubuli. hnRNP Q contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; hnRNP Q binds RNA through its RRM domains. Length = 79

>gnl|CDD|240927 cd12483, RRM1_hnRNPQ, RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           T+++V  +P DL ++E V + +K G +          ++L  DP T   +G A  T+  K
Sbjct: 2   TEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LRLMMDPLTGLNRGYAFVTFCTK 53

Query: 561 ESVDLALSILDGYEIR-GKKIKV 582
           E+   A+ + + +EIR GK I V
Sbjct: 54  EAAQEAVKLYNNHEIRPGKHIGV 76

This subgroup corresponds to the RRM1 of hnRNP Q, also termed glycine- and tyrosine-rich RNA-binding protein (GRY-RBP), or NS1-associated protein 1 (NASP1), or synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP). It is a ubiquitously expressed nuclear RNA-binding protein identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome. As an alternatively spliced version of NSAP, it acts as an interaction partner of a multifunctional protein required for viral replication, and is implicated in the regulation of specific mRNA transport. hnRNP Q has also been identified as SYNCRIP, a dual functional protein participating in both viral RNA replication and translation. As a synaptotagmin-binding protein, hnRNP Q plays a putative role in organelle-based mRNA transport along the cytoskeleton. Moreover, hnRNP Q has been found in protein complexes involved in translationally coupled mRNA turnover and mRNA splicing. It functions as a wild-type survival motor neuron (SMN)-binding protein that may participate in pre-mRNA splicing and modulate mRNA transport along microtubuli. hnRNP Q contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal RGG motif; hnRNP Q binds RNA through its RRM domains. Length = 79

>gnl|CDD|240835 cd12389, RRM2_RAVER, RNA recognition motif 2 in ribonucleoprotein PTB-binding raver-1, raver-2 and similar proteins

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 219 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 278
            V NLPL+ T E+F E++   G V         +  L     T + KG     Y  K S 
Sbjct: 3   CVGNLPLEFTDEQFRELVSPFGAV--------ERCFLVYSESTGESKGYGFVEYASKASA 54

Query: 279 DLALSILDGYEIRGKKIKVERA 300
             A + LDG +I G+K++V+ A
Sbjct: 55  LKAKNQLDGKQIGGRKLQVDWA 76

This subfamily corresponds to the RRM2 of raver-1 and raver-2. Raver-1 is a ubiquitously expressed heterogeneous nuclear ribonucleoprotein (hnRNP) that serves as a co-repressor of the nucleoplasmic splicing repressor polypyrimidine tract-binding protein (PTB)-directed splicing of select mRNAs. It shuttles between the cytoplasm and the nucleus and can accumulate in the perinucleolar compartment, a dynamic nuclear substructure that harbors PTB. Raver-1 also modulates focal adhesion assembly by binding to the cytoskeletal proteins, including alpha-actinin, vinculin, and metavinculin (an alternatively spliced isoform of vinculin) at adhesion complexes, particularly in differentiated muscle tissue. Raver-2 is a novel member of the heterogeneous nuclear ribonucleoprotein (hnRNP) family. It shows high sequence homology to raver-1. Raver-2 exerts a spatio-temporal expression pattern during embryogenesis and is mainly limited to differentiated neurons and glia cells. Although it displays nucleo-cytoplasmic shuttling in heterokaryons, raver2 localizes to the nucleus in glia cells and neurons. Raver-2 can interact with PTB and may participate in PTB-mediated RNA-processing. However, there is no evidence indicating that raver-2 can bind to cytoplasmic proteins. Both, raver-1 and raver-2, contain three N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two putative nuclear localization signals (NLS) at the N- and C-termini, a central leucine-rich region, and a C-terminal region harboring two [SG][IL]LGxxP motifs. They binds to RNA through the RRMs. In addition, the two [SG][IL]LGxxP motifs serve as the PTB-binding motifs in raver1. However, raver-2 interacts with PTB through the SLLGEPP motif only. . Length = 77

>gnl|CDD|240835 cd12389, RRM2_RAVER, RNA recognition motif 2 in ribonucleoprotein PTB-binding raver-1, raver-2 and similar proteins

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 563
            V NLPL+ T E+F E++   G V         +  L     T + KG     Y  K S 
Sbjct: 3   CVGNLPLEFTDEQFRELVSPFGAV--------ERCFLVYSESTGESKGYGFVEYASKASA 54

Query: 564 DLALSILDGYEIRGKKIKVERA 585
             A + LDG +I G+K++V+ A
Sbjct: 55  LKAKNQLDGKQIGGRKLQVDWA 76

This subfamily corresponds to the RRM2 of raver-1 and raver-2. Raver-1 is a ubiquitously expressed heterogeneous nuclear ribonucleoprotein (hnRNP) that serves as a co-repressor of the nucleoplasmic splicing repressor polypyrimidine tract-binding protein (PTB)-directed splicing of select mRNAs. It shuttles between the cytoplasm and the nucleus and can accumulate in the perinucleolar compartment, a dynamic nuclear substructure that harbors PTB. Raver-1 also modulates focal adhesion assembly by binding to the cytoskeletal proteins, including alpha-actinin, vinculin, and metavinculin (an alternatively spliced isoform of vinculin) at adhesion complexes, particularly in differentiated muscle tissue. Raver-2 is a novel member of the heterogeneous nuclear ribonucleoprotein (hnRNP) family. It shows high sequence homology to raver-1. Raver-2 exerts a spatio-temporal expression pattern during embryogenesis and is mainly limited to differentiated neurons and glia cells. Although it displays nucleo-cytoplasmic shuttling in heterokaryons, raver2 localizes to the nucleus in glia cells and neurons. Raver-2 can interact with PTB and may participate in PTB-mediated RNA-processing. However, there is no evidence indicating that raver-2 can bind to cytoplasmic proteins. Both, raver-1 and raver-2, contain three N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two putative nuclear localization signals (NLS) at the N- and C-termini, a central leucine-rich region, and a C-terminal region harboring two [SG][IL]LGxxP motifs. They binds to RNA through the RRMs. In addition, the two [SG][IL]LGxxP motifs serve as the PTB-binding motifs in raver1. However, raver-2 interacts with PTB through the SLLGEPP motif only. . Length = 77

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVAQIFFKEP 408
           + V NL        D T     ++DL++  SK G ++ + +        +G A + F++ 
Sbjct: 1   LFVGNL------PPDTT-----EEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDE 49

Query: 409 EAADACRELLNGRWFGQRQIT 429
           E A+   E LNG+  G R++ 
Sbjct: 50  EDAEKALEALNGKELGGRELR 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 14/81 (17%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVAQIFFKEP 693
           + V NL        D T     ++DL++  SK G ++ + +        +G A + F++ 
Sbjct: 1   LFVGNL------PPDTT-----EEDLKDLFSKFGPIESIRIVRDETGRSKGFAFVEFEDE 49

Query: 694 EAADACRELLNGRWFGQRQIT 714
           E A+   E LNG+  G R++ 
Sbjct: 50  EDAEKALEALNGKELGGRELR 70

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

>gnl|CDD|240892 cd12446, RRM_RBM25, RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 216 TKVYVSNLPLDLTQEEFVE-VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           T V+V N+P  ++ ++F+  +++KCG V+          K   DP T   K    C +  
Sbjct: 1   TTVFVGNIPEGVS-DDFIRKLLEKCGKVLS--------WKRVKDPSTGKLKAFGFCEFED 51

Query: 275 KESVDLALSILDGYEIRGKKIKV 297
            E    AL +L+G E+ GKK+ V
Sbjct: 52  PEGALRALRLLNGLELGGKKLLV 74

This subfamily corresponds to the RRM of RBM25, also termed Arg/Glu/Asp-rich protein of 120 kDa (RED120), or protein S164, or RNA-binding region-containing protein 7, an evolutionary-conserved splicing coactivator SRm160 (SR-related nuclear matrix protein of 160 kDa, )-interacting protein. RBM25 belongs to a family of RNA-binding proteins containing a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the N-terminus, a RE/RD-rich (ER) central region, and a C-terminal proline-tryptophan-isoleucine (PWI) motif. It localizes to the nuclear speckles and associates with multiple splicing components, including splicing cofactors SRm160/300, U snRNAs, assembled splicing complexes, and spliced mRNAs. It may play an important role in pre-mRNA processing by coupling splicing with mRNA 3'-end formation. Additional research indicates that RBM25 is one of the RNA-binding regulators that direct the alternative splicing of apoptotic factors. It can activate proapoptotic Bcl-xS 5'ss by binding to the exonic splicing enhancer, CGGGCA, and stabilize the pre-mRNA-U1 snRNP through interaction with hLuc7A, a U1 snRNP-associated factor. . Length = 84

>gnl|CDD|240892 cd12446, RRM_RBM25, RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 501 TKVYVSNLPLDLTQEEFVE-VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           T V+V N+P  ++ ++F+  +++KCG V+          K   DP T   K    C +  
Sbjct: 1   TTVFVGNIPEGVS-DDFIRKLLEKCGKVLS--------WKRVKDPSTGKLKAFGFCEFED 51

Query: 560 KESVDLALSILDGYEIRGKKIKV 582
            E    AL +L+G E+ GKK+ V
Sbjct: 52  PEGALRALRLLNGLELGGKKLLV 74

This subfamily corresponds to the RRM of RBM25, also termed Arg/Glu/Asp-rich protein of 120 kDa (RED120), or protein S164, or RNA-binding region-containing protein 7, an evolutionary-conserved splicing coactivator SRm160 (SR-related nuclear matrix protein of 160 kDa, )-interacting protein. RBM25 belongs to a family of RNA-binding proteins containing a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), at the N-terminus, a RE/RD-rich (ER) central region, and a C-terminal proline-tryptophan-isoleucine (PWI) motif. It localizes to the nuclear speckles and associates with multiple splicing components, including splicing cofactors SRm160/300, U snRNAs, assembled splicing complexes, and spliced mRNAs. It may play an important role in pre-mRNA processing by coupling splicing with mRNA 3'-end formation. Additional research indicates that RBM25 is one of the RNA-binding regulators that direct the alternative splicing of apoptotic factors. It can activate proapoptotic Bcl-xS 5'ss by binding to the exonic splicing enhancer, CGGGCA, and stabilize the pre-mRNA-U1 snRNP through interaction with hLuc7A, a U1 snRNP-associated factor. . Length = 84

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 377 LREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
           L +  S  G+V+K+ L  K P G A + F   EAA+   + LNG  FG R +
Sbjct: 1   LYKLFSPFGNVEKIKLLKKKP-GFAFVEFSTEEAAEKAVQYLNGVLFGGRPL 51

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 662 LREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
           L +  S  G+V+K+ L  K P G A + F   EAA+   + LNG  FG R +
Sbjct: 1   LYKLFSPFGNVEKIKLLKKKP-GFAFVEFSTEEAAEKAVQYLNGVLFGGRPL 51

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|240839 cd12393, RRM_ZCRB1, RNA recognition motif in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           VYVSNLP  LT  +  ++  K G V+K        + +  D  T+  KG A   ++ +E 
Sbjct: 4   VYVSNLPFSLTNNDLHKIFSKYGKVVK--------VTIVKDKETRKSKGVAFILFLDRED 55

Query: 278 VDLALSILDGYEIRGKKIKVERA 300
               +  L+  E+ G+ +K   A
Sbjct: 56  AHKCVKALNNKELFGRTLKCSIA 78

This subfamily corresponds to the RRM of ZCRB1, also termed MADP-1, or U11/U12 small nuclear ribonucleoprotein 31 kDa protein (U11/U12 snRNP 31 or U11/U12-31K), a novel multi-functional nuclear factor, which may be involved in morphine dependence, cold/heat stress, and hepatocarcinoma. It is located in the nucleoplasm, but outside the nucleolus. ZCRB1 is one of the components of U11/U12 snRNPs that bind to U12-type pre-mRNAs and form a di-snRNP complex, simultaneously recognizing the 5' splice site and branchpoint sequence. ZCRB1 is characterized by an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a CCHC-type Zinc finger motif. In addition, it contains core nucleocapsid motifs, and Lys- and Glu-rich domains. . Length = 78

>gnl|CDD|240839 cd12393, RRM_ZCRB1, RNA recognition motif in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           VYVSNLP  LT  +  ++  K G V+K        + +  D  T+  KG A   ++ +E 
Sbjct: 4   VYVSNLPFSLTNNDLHKIFSKYGKVVK--------VTIVKDKETRKSKGVAFILFLDRED 55

Query: 563 VDLALSILDGYEIRGKKIKVERA 585
               +  L+  E+ G+ +K   A
Sbjct: 56  AHKCVKALNNKELFGRTLKCSIA 78

This subfamily corresponds to the RRM of ZCRB1, also termed MADP-1, or U11/U12 small nuclear ribonucleoprotein 31 kDa protein (U11/U12 snRNP 31 or U11/U12-31K), a novel multi-functional nuclear factor, which may be involved in morphine dependence, cold/heat stress, and hepatocarcinoma. It is located in the nucleoplasm, but outside the nucleolus. ZCRB1 is one of the components of U11/U12 snRNPs that bind to U12-type pre-mRNAs and form a di-snRNP complex, simultaneously recognizing the 5' splice site and branchpoint sequence. ZCRB1 is characterized by an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a CCHC-type Zinc finger motif. In addition, it contains core nucleocapsid motifs, and Lys- and Glu-rich domains. . Length = 78

>gnl|CDD|240677 cd12231, RRM2_U2AF65, RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 14/87 (16%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIK---LYTDPYTKDFKGDALCTYI 273
           K+++  LP  L++++  E+++  G           K+K   L  D  T   KG A C Y+
Sbjct: 2   KIFIGGLPNYLSEDQVKELLESFG-----------KLKAFNLVKDSATGLSKGYAFCEYL 50

Query: 274 KKESVDLALSILDGYEIRGKKIKVERA 300
                D A++ L+G ++  KK+ V+RA
Sbjct: 51  DPSVTDQAIAGLNGMQLGDKKLTVQRA 77

This subfamily corresponds to the RRM2 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 77

>gnl|CDD|240677 cd12231, RRM2_U2AF65, RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 14/87 (16%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIK---LYTDPYTKDFKGDALCTYI 558
           K+++  LP  L++++  E+++  G           K+K   L  D  T   KG A C Y+
Sbjct: 2   KIFIGGLPNYLSEDQVKELLESFG-----------KLKAFNLVKDSATGLSKGYAFCEYL 50

Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
                D A++ L+G ++  KK+ V+RA
Sbjct: 51  DPSVTDQAIAGLNGMQLGDKKLTVQRA 77

This subfamily corresponds to the RRM2 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 77

>gnl|CDD|240979 cd12535, RRM_FUS_TAF15, RNA recognition motif in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 41/84 (48%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           ++  ++V  L  D+T E   +  ++ G++  +  T Q  I LYTD  T   KG+A  ++ 
Sbjct: 1   DNNTIFVQGLGEDVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 60

Query: 274 KKESVDLALSILDGYEIRGKKIKV 297
              S   A+   DG E  G  IKV
Sbjct: 61  DPPSAKAAIDWFDGKEFSGNPIKV 84

This subgroup corresponds to the RRM of FUS and TAF15. FUS (TLS or Pigpen or hnRNP P2), also termed 75 kDa DNA-pairing protein (POMp75), or oncoprotein TLS (Translocated in liposarcoma), is a member of the FET (previously TET) (FUS/TLS, EWS, TAF15) family of RNA- and DNA-binding proteins whose expression is altered in cancer. It is a multi-functional protein and has been implicated in pre-mRNA splicing, chromosome stability, cell spreading, and transcription. FUS was originally identified in human myxoid and round cell liposarcomas as an oncogenic fusion with the stress-induced DNA-binding transcription factor CHOP (CCAAT enhancer-binding homologous protein) and later as hnRNP P2, a component of hnRNP H complex assembled on pre-mRNA. It can form ternary complexes with hnRNP A1 and hnRNP C1/C2. Additional research indicates that FUS binds preferentially to GGUG-containing RNAs. In the presence of Mg2+, it can bind both single- and double-stranded DNA (ssDNA/dsDNA) and promote ATP-independent annealing of complementary ssDNA and D-loop formation in superhelical dsDNA. FUS has been shown to be recruited by single stranded noncoding RNAs to the regulatory regions of target genes such as cyclin D1, where it represses transcription by disrupting complex formation. TAF15 (TAFII68), also termed TATA-binding protein-associated factor 2N (TAF2N), or RNA-binding protein 56 (RBP56), originally identified as a TAF in the general transcription initiation TFIID complex, is a novel RNA/ssDNA-binding protein with homology to the proto-oncoproteins FUS and EWS (also termed EWSR1), belonging to the FET family as well. TAF15 likely functions in RNA polymerase II (RNAP II) transcription by interacting with TFIID and subunits of RNAP II itself. TAF15 is also associated with U1 snRNA, chromatin and RNA, in a complex distinct from the Sm-containing U1 snRNP that functions in splicing. Like other members in the FET family, both FUS and TAF15 contain an N-terminal Ser, Gly, Gln and Tyr-rich region composed of multiple copies of a degenerate hexapeptide repeat motif. The C-terminal region consists of a conserved nuclear import and retention signal (C-NLS), a C2/C2 zinc-finger motif, a conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and at least 1 arginine-glycine-glycine (RGG)-repeat region. . Length = 86

>gnl|CDD|240719 cd12273, RRM1_NEFsp, RNA recognition motif 1 in vertebrate putative RNA exonuclease NEF-sp

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           VY    P      +   + + CG V K            T       +  A  T+   E+
Sbjct: 2   VYAGPFPTSFCLSDVKRLFETCGPVRK-----------VTMLSRT-VQPHAFITFENLEA 49

Query: 278 VDLALSILDGYEIRGKKIKVER 299
             LA+  L+G  + G  IKV+R
Sbjct: 50  AQLAIETLNGASVDGNCIKVQR 71

This subfamily corresponds to the RRM1 of NEF-sp., including uncharacterized putative RNA exonuclease NEF-sp found in vertebrates. Although its cellular functions remains unclear, NEF-sp contains an exonuclease domain and two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), suggesting it may possess both exonuclease and RNA-binding activities. . Length = 71

>gnl|CDD|240719 cd12273, RRM1_NEFsp, RNA recognition motif 1 in vertebrate putative RNA exonuclease NEF-sp

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           VY    P      +   + + CG V K            T       +  A  T+   E+
Sbjct: 2   VYAGPFPTSFCLSDVKRLFETCGPVRK-----------VTMLSRT-VQPHAFITFENLEA 49

Query: 563 VDLALSILDGYEIRGKKIKVER 584
             LA+  L+G  + G  IKV+R
Sbjct: 50  AQLAIETLNGASVDGNCIKVQR 71

This subfamily corresponds to the RRM1 of NEF-sp., including uncharacterized putative RNA exonuclease NEF-sp found in vertebrates. Although its cellular functions remains unclear, NEF-sp contains an exonuclease domain and two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), suggesting it may possess both exonuclease and RNA-binding activities. . Length = 71

>gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF-KGDALCTYIKK 275
           ++YV NL   L +++   +  K G    +V+   ++I    D        G A  T+   
Sbjct: 2   EIYVRNLDFKLDEDDLRGIFSKFG----EVE--SIRIPKKQDEKQGRLNNGFAFVTFKDA 55

Query: 276 ESVDLALSILDGYEIRGKKIKVER 299
            S + AL  L+G E+ G+KI V  
Sbjct: 56  SSAENALQ-LNGTELGGRKISVSL 78

This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78

>gnl|CDD|240744 cd12298, RRM3_Prp24, RNA recognition motif 3 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF-KGDALCTYIKK 560
           ++YV NL   L +++   +  K G    +V+   ++I    D        G A  T+   
Sbjct: 2   EIYVRNLDFKLDEDDLRGIFSKFG----EVE--SIRIPKKQDEKQGRLNNGFAFVTFKDA 55

Query: 561 ESVDLALSILDGYEIRGKKIKVER 584
            S + AL  L+G E+ G+KI V  
Sbjct: 56  SSAENALQ-LNGTELGGRKISVSL 78

This subfamily corresponds to the RRM3 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 78

>gnl|CDD|233507 TIGR01648, hnRNP-R-Q, heterogeneous nuclear ribonucleoprotein R, Q family

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 32/150 (21%)

Query: 198 GQKRKPEPPKWFDIG--EESTKVYVSNLPLDLTQEEFVEVMQKCGLV-----MKDVDTNQ 250
           GQ++   PP  +         +V+V  +P DL ++E V + +K G +     M D     
Sbjct: 39  GQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQN 98

Query: 251 MKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-----GKKIKVERAKFTMK 305
                         +G A  T+  KE    A+ +L+ YEIR     G  I V+  +  + 
Sbjct: 99  --------------RGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVG 144

Query: 306 GEAYDPKLKPKKKRKKDLEKLKKAQEKLFD 335
           G    PK    KKR++ LE+  K  E + D
Sbjct: 145 G---IPKN---KKREEILEEFSKVTEGVVD 168

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R , Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. Length = 578

>gnl|CDD|240750 cd12304, RRM_Set1, RNA recognition motif in the Set1-like family of histone-lysine N-methyltransferases

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 377 LREECSKCGHVKKVVLHDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
           L++ C K G V++V ++  HP+     G+A++ F   ++A  C E LN      + I   
Sbjct: 19  LKDMCKKYGEVEEVKIY-FHPKTNKHLGLARVVFDSVKSAKRCVEKLNQTSVMGKIIKVF 77

Query: 432 -TWDGKTRYKIQETAE 446
               G+ R ++ E  E
Sbjct: 78  LDPKGEIRKRLYEDLE 93

This subfamily corresponds to the RRM of the Set1-like family of histone-lysine N-methyltransferases which includes Set1A and Set1B that are ubiquitously expressed vertebrates histone methyltransferases exhibiting high homology to yeast Set1. Set1A and Set1B proteins exhibit a largely non-overlapping subnuclear distribution in euchromatic nuclear speckles, strongly suggesting that they bind to a unique set of target genes and thus make non-redundant contributions to the epigenetic control of chromatin structure and gene expression. With the exception of the catalytic component, the subunit composition of the Set1A and Set1B histone methyltransferase complexes are identical. Each complex contains six human homologs of the yeast Set1/COMPASS complex, including Set1A or Set1B, Ash2 (homologous to yeast Bre2), CXXC finger protein 1 (CFP1; homologous to yeast Spp1), Rbbp5 (homologous to yeast Swd1), Wdr5 (homologous to yeast Swd3), and Wdr82 (homologous to yeast Swd2). The genomic targeting of these complexes is determined by the identity of the catalytic subunit present in each histone methyltransferase complex. Thus, the Set1A and Set1B complexes may exhibit both overlapping and non-redundant properties. Both Set1A and Set1B contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), an N- SET domain, and a C-terminal catalytic SET domain followed by a post-SET domain. In contrast to Set1B, Set1A additionally contains an HCF-1 binding motif that interacts with HCF-1 in vivo. . Length = 93

>gnl|CDD|240750 cd12304, RRM_Set1, RNA recognition motif in the Set1-like family of histone-lysine N-methyltransferases

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 662 LREECSKCGHVKKVVLHDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
           L++ C K G V++V ++  HP+     G+A++ F   ++A  C E LN      + I   
Sbjct: 19  LKDMCKKYGEVEEVKIY-FHPKTNKHLGLARVVFDSVKSAKRCVEKLNQTSVMGKIIKVF 77

Query: 717 -TWDGKTRYKIQETAE 731
               G+ R ++ E  E
Sbjct: 78  LDPKGEIRKRLYEDLE 93

This subfamily corresponds to the RRM of the Set1-like family of histone-lysine N-methyltransferases which includes Set1A and Set1B that are ubiquitously expressed vertebrates histone methyltransferases exhibiting high homology to yeast Set1. Set1A and Set1B proteins exhibit a largely non-overlapping subnuclear distribution in euchromatic nuclear speckles, strongly suggesting that they bind to a unique set of target genes and thus make non-redundant contributions to the epigenetic control of chromatin structure and gene expression. With the exception of the catalytic component, the subunit composition of the Set1A and Set1B histone methyltransferase complexes are identical. Each complex contains six human homologs of the yeast Set1/COMPASS complex, including Set1A or Set1B, Ash2 (homologous to yeast Bre2), CXXC finger protein 1 (CFP1; homologous to yeast Spp1), Rbbp5 (homologous to yeast Swd1), Wdr5 (homologous to yeast Swd3), and Wdr82 (homologous to yeast Swd2). The genomic targeting of these complexes is determined by the identity of the catalytic subunit present in each histone methyltransferase complex. Thus, the Set1A and Set1B complexes may exhibit both overlapping and non-redundant properties. Both Set1A and Set1B contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), an N- SET domain, and a C-terminal catalytic SET domain followed by a post-SET domain. In contrast to Set1B, Set1A additionally contains an HCF-1 binding motif that interacts with HCF-1 in vivo. . Length = 93

>gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           V+V NLP D+ +EE  +  + CG V          +++  D  T   KG     +  K+S
Sbjct: 2   VFVGNLPFDIEEEELRKHFEDCGDV--------EAVRIVRDRKTGIGKGFGYVLFKTKDS 53

Query: 278 VDLALSILDGYEIRGKKIKVE 298
           V LAL  L+G +++G+KI+V+
Sbjct: 54  VALALK-LNGIKLKGRKIRVK 73

This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73

>gnl|CDD|240841 cd12395, RRM2_RBM34, RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V+V NLP D+ +EE  +  + CG V          +++  D  T   KG     +  K+S
Sbjct: 2   VFVGNLPFDIEEEELRKHFEDCGDV--------EAVRIVRDRKTGIGKGFGYVLFKTKDS 53

Query: 563 VDLALSILDGYEIRGKKIKVE 583
           V LAL  L+G +++G+KI+V+
Sbjct: 54  VALALK-LNGIKLKGRKIRVK 73

This subfamily corresponds to the RRM2 of RBM34, a putative RNA-binding protein containing two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Although the function of RBM34 remains unclear currently, its RRM domains may participate in mRNA processing. RBM34 may act as an mRNA processing-related protein. . Length = 73

>gnl|CDD|240928 cd12484, RRM1_RBM46, RNA recognition motif 1 found in vertebrate RNA-binding protein 46 (RBM46)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           +V+V  +P D+ ++E V + ++ G + +         +L  + ++ + +G A   Y  KE
Sbjct: 3   EVFVGKIPRDMYEDELVPLFERAGKIYE--------FRLMME-FSGENRGYAFVMYTTKE 53

Query: 277 SVDLALSILDGYEIR-GKKIKV 297
              LA+ IL+ YEIR GK I V
Sbjct: 54  EAQLAIRILNNYEIRPGKFIGV 75

This subgroup corresponds to the RRM1 of RBM46, also termed cancer/testis antigen 68 (CT68), a putative RNA-binding protein that shows high sequence homology with heterogeneous nuclear ribonucleoprotein R (hnRNP R) and heterogeneous nuclear ribonucleoprotein Q (hnRNP Q). Its biological function remains unclear. Like hnRNP R and hnRNP Q, RBM46 contains two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 78

>gnl|CDD|240928 cd12484, RRM1_RBM46, RNA recognition motif 1 found in vertebrate RNA-binding protein 46 (RBM46)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           +V+V  +P D+ ++E V + ++ G + +         +L  + ++ + +G A   Y  KE
Sbjct: 3   EVFVGKIPRDMYEDELVPLFERAGKIYE--------FRLMME-FSGENRGYAFVMYTTKE 53

Query: 562 SVDLALSILDGYEIR-GKKIKV 582
              LA+ IL+ YEIR GK I V
Sbjct: 54  EAQLAIRILNNYEIRPGKFIGV 75

This subgroup corresponds to the RRM1 of RBM46, also termed cancer/testis antigen 68 (CT68), a putative RNA-binding protein that shows high sequence homology with heterogeneous nuclear ribonucleoprotein R (hnRNP R) and heterogeneous nuclear ribonucleoprotein Q (hnRNP Q). Its biological function remains unclear. Like hnRNP R and hnRNP Q, RBM46 contains two well-defined and one degenerated RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 78

>gnl|CDD|240857 cd12411, RRM_ist3_like, RNA recognition motif in ist3 family

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 208 WFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 267
           W D  ++S  +Y+  LP +LT+ + + V  + G +   VD     I L  D  T   KG 
Sbjct: 2   WHDQYKDSAYIYIGGLPYELTEGDILCVFSQYGEI---VD-----INLVRDKKTGKSKGF 53

Query: 268 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           A   Y  + S  LA+  L+G ++ G+ I+V+  +
Sbjct: 54  AFLAYEDQRSTILAVDNLNGIKLLGRTIRVDHVR 87

This subfamily corresponds to the RRM of the ist3 family that includes fungal U2 small nuclear ribonucleoprotein (snRNP) component increased sodium tolerance protein 3 (ist3), X-linked 2 RNA-binding motif proteins (RBMX2) found in Metazoa and plants, and similar proteins. Gene IST3 encoding ist3, also termed U2 snRNP protein SNU17 (Snu17p), is a novel yeast Saccharomyces cerevisiae protein required for the first catalytic step of splicing and for progression of spliceosome assembly. It binds specifically to the U2 snRNP and is an intrinsic component of prespliceosomes and spliceosomes. Yeast ist3 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In the yeast pre-mRNA retention and splicing complex, the atypical RRM of ist3 functions as a scaffold that organizes the other two constituents, Bud13p (bud site selection 13) and Pml1p (pre-mRNA leakage 1). Fission yeast Schizosaccharomyces pombe gene cwf29 encoding ist3, also termed cell cycle control protein cwf29, is an RNA-binding protein complexed with cdc5 protein 29. It also contains one RRM. The biological function of RBMX2 remains unclear. It shows high sequence similarity to yeast ist3 protein and harbors one RRM as well. . Length = 89

>gnl|CDD|240808 cd12362, RRM3_CELF1-6, RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +++ +LP + T ++  ++    G        N +  K++ D  T   K     +Y   ES
Sbjct: 1   LFIYHLPNEFTDQDLYQLFAPFG--------NVISAKVFVDKNTGQSKCFGFVSYDNPES 52

Query: 278 VDLALSILDGYEIRGKKIKVE 298
              A+  ++G+++ GK++KV+
Sbjct: 53  AQAAIKAMNGFQVGGKRLKVQ 73

This subgroup corresponds to the RRM3 of the CUGBP1 and ETR-3-like factors (CELF) or BRUNOL (Bruno-like) proteins, a family of structurally related RNA-binding proteins involved in the regulation of pre-mRNA splicing in the nucleus and in the control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also termed BRUNOL-2, or CUG-BP1, or NAPOR, or EDEN-BP), CELF-2 (also termed BRUNOL-3, or ETR-3, or CUG-BP2, or NAPOR-2), CELF-3 (also termed BRUNOL-1, or TNRC4, or ETR-1, or CAGH4, or ER DA4), CELF-4 (also termed BRUNOL-4), CELF-5 (also termed BRUNOL-5), CELF-6 (also termed BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. . Length = 73

>gnl|CDD|240808 cd12362, RRM3_CELF1-6, RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +++ +LP + T ++  ++    G        N +  K++ D  T   K     +Y   ES
Sbjct: 1   LFIYHLPNEFTDQDLYQLFAPFG--------NVISAKVFVDKNTGQSKCFGFVSYDNPES 52

Query: 563 VDLALSILDGYEIRGKKIKVE 583
              A+  ++G+++ GK++KV+
Sbjct: 53  AQAAIKAMNGFQVGGKRLKVQ 73

This subgroup corresponds to the RRM3 of the CUGBP1 and ETR-3-like factors (CELF) or BRUNOL (Bruno-like) proteins, a family of structurally related RNA-binding proteins involved in the regulation of pre-mRNA splicing in the nucleus and in the control of mRNA translation and deadenylation in the cytoplasm. The family contains six members: CELF-1 (also termed BRUNOL-2, or CUG-BP1, or NAPOR, or EDEN-BP), CELF-2 (also termed BRUNOL-3, or ETR-3, or CUG-BP2, or NAPOR-2), CELF-3 (also termed BRUNOL-1, or TNRC4, or ETR-1, or CAGH4, or ER DA4), CELF-4 (also termed BRUNOL-4), CELF-5 (also termed BRUNOL-5), CELF-6 (also termed BRUNOL-6). They all contain three highly conserved RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains): two consecutive RRMs (RRM1 and RRM2) situated in the N-terminal region followed by a linker region and the third RRM (RRM3) close to the C-terminus of the protein. The low sequence conservation of the linker region is highly suggestive of a large variety in the co-factors that associate with the various CELF family members. Based on both sequence similarity and function, the CELF family can be divided into two subfamilies, the first containing CELFs 1 and 2, and the second containing CELFs 3, 4, 5, and 6. The different CELF proteins may act through different sites on at least some substrates. Furthermore, CELF proteins may interact with each other in varying combinations to influence alternative splicing in different contexts. . Length = 73

>gnl|CDD|233507 TIGR01648, hnRNP-R-Q, heterogeneous nuclear ribonucleoprotein R, Q family

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 30/133 (22%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLV-----MKDVDTNQMKIKLYTDPYTKDFKGD 552
               +V+V  +P DL ++E V + +K G +     M D                   +G 
Sbjct: 56  GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQN--------------RGY 101

Query: 553 ALCTYIKKESVDLALSILDGYEIR-----GKKIKVERAKFTMKGEAYDPKLKPKKKRKKD 607
           A  T+  KE    A+ +L+ YEIR     G  I V+  +  + G    PK    KKR++ 
Sbjct: 102 AFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGG---IPKN---KKREEI 155

Query: 608 LEKLKKAQEKLFD 620
           LE+  K  E + D
Sbjct: 156 LEEFSKVTEGVVD 168

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R , Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain. Length = 578

>gnl|CDD|240718 cd12272, RRM2_PHIP1, RNA recognition motif 2 in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           VY+ NL  D+T+++  E  + C +           ++L TD  T +FKG     +  +ES
Sbjct: 2   VYIGNLAWDITEDDVREFFKGCEIT---------SVRLATDKETGEFKGFGHVDFADEES 52

Query: 278 VDLALSILDGYEIRGKKIKV 297
           +D AL  LDG  + G+ I++
Sbjct: 53  LDAALK-LDGTVLCGRPIRI 71

The CD corresponds to the RRM2 of PHIP1. A. thaliana PHIP1 and its homologs represent a novel class of plant-specific RNA-binding proteins that may play a unique role in the polarized mRNA transport to the vicinity of the cell plate. The family members consist of multiple functional domains, including a lysine-rich domain (KRD domain) that contains three nuclear localization motifs (KKKR/NK), two RNA recognition motifs (RRMs), and three CCHC-type zinc fingers. PHIP1 is a peripheral membrane protein and is localized at the cell plate during cytokinesis in plants. In addition to phragmoplastin, PHIP1 interacts with two Arabidopsis small GTP-binding proteins, Rop1 and Ran2. However, PHIP1 interacted only with the GTP-bound form of Rop1 but not the GDP-bound form. It also binds specifically to Ran2 mRNA. . Length = 72

>gnl|CDD|240718 cd12272, RRM2_PHIP1, RNA recognition motif 2 in Arabidopsis thaliana phragmoplastin interacting protein 1 (PHIP1) and similar proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           VY+ NL  D+T+++  E  + C +           ++L TD  T +FKG     +  +ES
Sbjct: 2   VYIGNLAWDITEDDVREFFKGCEIT---------SVRLATDKETGEFKGFGHVDFADEES 52

Query: 563 VDLALSILDGYEIRGKKIKV 582
           +D AL  LDG  + G+ I++
Sbjct: 53  LDAALK-LDGTVLCGRPIRI 71

The CD corresponds to the RRM2 of PHIP1. A. thaliana PHIP1 and its homologs represent a novel class of plant-specific RNA-binding proteins that may play a unique role in the polarized mRNA transport to the vicinity of the cell plate. The family members consist of multiple functional domains, including a lysine-rich domain (KRD domain) that contains three nuclear localization motifs (KKKR/NK), two RNA recognition motifs (RRMs), and three CCHC-type zinc fingers. PHIP1 is a peripheral membrane protein and is localized at the cell plate during cytokinesis in plants. In addition to phragmoplastin, PHIP1 interacts with two Arabidopsis small GTP-binding proteins, Rop1 and Ran2. However, PHIP1 interacted only with the GTP-bound form of Rop1 but not the GDP-bound form. It also binds specifically to Ran2 mRNA. . Length = 72

>gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           V++ NLP D T+EE  E+  + G V           ++  D  T   KG A   +  KES
Sbjct: 3   VFIRNLPFDATEEELKELFSQFGEV--------KYARIVKDKLTGHSKGTAFVKFKTKES 54

Query: 278 VDLALSILD-----GYEIRGKKIKVERA 300
               L   D     G  + G+++ V  A
Sbjct: 55  AQKCLEAADNAEDSGLSLDGRRLIVTLA 82

This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82

>gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V++ NLP D T+EE  E+  + G V           ++  D  T   KG A   +  KES
Sbjct: 3   VFIRNLPFDATEEELKELFSQFGEV--------KYARIVKDKLTGHSKGTAFVKFKTKES 54

Query: 563 VDLALSILD-----GYEIRGKKIKVERA 585
               L   D     G  + G+++ V  A
Sbjct: 55  AQKCLEAADNAEDSGLSLDGRRLIVTLA 82

This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82

>gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 374 QQDLREECSKCGHVK--KVVLHD--KHPEGVAQIFFKEPEAADAC 414
           +++L+E  S+ G VK  ++V      H +G A + FK  E+A  C
Sbjct: 14  EEELKELFSQFGEVKYARIVKDKLTGHSKGTAFVKFKTKESAQKC 58

This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82

>gnl|CDD|240861 cd12415, RRM3_RBM28_like, RNA recognition motif 3 in RNA-binding protein 28 (RBM28) and similar proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 659 QQDLREECSKCGHVK--KVVLHD--KHPEGVAQIFFKEPEAADAC 699
           +++L+E  S+ G VK  ++V      H +G A + FK  E+A  C
Sbjct: 14  EEELKELFSQFGEVKYARIVKDKLTGHSKGTAFVKFKTKESAQKC 58

This subfamily corresponds to the RRM3 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. . Length = 82

>gnl|CDD|240821 cd12375, RRM1_Hu_like, RNA recognition motif 1 in the Hu proteins family, Drosophila sex-lethal (SXL), and similar proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T + V+ LP D+TQEE   + +  G +           K+  D  T    G     Y+ +
Sbjct: 1   TNLIVNYLPQDMTQEELRSLFEAIGPIES--------CKIVRDRITGQSLGYGFVDYVDE 52

Query: 276 ESVDLALSILDGYEIRGKKIKVERA 300
                A++ L+G+EIR K++KV  A
Sbjct: 53  NDAQKAINTLNGFEIRNKRLKVSYA 77

This subfamily corresponds to the RRM1 of Hu proteins and SXL. The Hu proteins family represents a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. This family also includes the sex-lethal protein (SXL) from Drosophila melanogaster. SXL governs sexual differentiation and X chromosome dosage compensation in flies. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds to its own pre-mRNA and promotes female-specific alternative splicing. It contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RRMs that show high preference to bind single-stranded, uridine-rich target RNA transcripts. . Length = 77

>gnl|CDD|240821 cd12375, RRM1_Hu_like, RNA recognition motif 1 in the Hu proteins family, Drosophila sex-lethal (SXL), and similar proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           T + V+ LP D+TQEE   + +  G +           K+  D  T    G     Y+ +
Sbjct: 1   TNLIVNYLPQDMTQEELRSLFEAIGPIES--------CKIVRDRITGQSLGYGFVDYVDE 52

Query: 561 ESVDLALSILDGYEIRGKKIKVERA 585
                A++ L+G+EIR K++KV  A
Sbjct: 53  NDAQKAINTLNGFEIRNKRLKVSYA 77

This subfamily corresponds to the RRM1 of Hu proteins and SXL. The Hu proteins family represents a group of RNA-binding proteins involved in diverse biological processes. Since the Hu proteins share high homology with the Drosophila embryonic lethal abnormal vision (ELAV) protein, the Hu family is sometimes referred to as the ELAV family. Drosophila ELAV is exclusively expressed in neurons and is required for the correct differentiation and survival of neurons in flies. The neuronal members of the Hu family include Hu-antigen B (HuB or ELAV-2 or Hel-N1), Hu-antigen C (HuC or ELAV-3 or PLE21), and Hu-antigen D (HuD or ELAV-4), which play important roles in neuronal differentiation, plasticity and memory. HuB is also expressed in gonads. Hu-antigen R (HuR or ELAV-1 or HuA) is ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. Hu proteins perform their cytoplasmic and nuclear molecular functions by coordinately regulating functionally related mRNAs. In the cytoplasm, Hu proteins recognize and bind to AU-rich RNA elements (AREs) in the 3' untranslated regions (UTRs) of certain target mRNAs, such as GAP-43, vascular epithelial growth factor (VEGF), the glucose transporter GLUT1, eotaxin and c-fos, and stabilize those ARE-containing mRNAs. They also bind and regulate the translation of some target mRNAs, such as neurofilament M, GLUT1, and p27. In the nucleus, Hu proteins function as regulators of polyadenylation and alternative splicing. Each Hu protein contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an ARE. RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions. This family also includes the sex-lethal protein (SXL) from Drosophila melanogaster. SXL governs sexual differentiation and X chromosome dosage compensation in flies. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds to its own pre-mRNA and promotes female-specific alternative splicing. It contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RRMs that show high preference to bind single-stranded, uridine-rich target RNA transcripts. . Length = 77

>gnl|CDD|240857 cd12411, RRM_ist3_like, RNA recognition motif in ist3 family

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +Y+  LP +LT+ + + V  + G +   VD     I L  D  T   KG A   Y  + S
Sbjct: 12  IYIGGLPYELTEGDILCVFSQYGEI---VD-----INLVRDKKTGKSKGFAFLAYEDQRS 63

Query: 563 VDLALSILDGYEIRGKKIKVERAK 586
             LA+  L+G ++ G+ I+V+  +
Sbjct: 64  TILAVDNLNGIKLLGRTIRVDHVR 87

This subfamily corresponds to the RRM of the ist3 family that includes fungal U2 small nuclear ribonucleoprotein (snRNP) component increased sodium tolerance protein 3 (ist3), X-linked 2 RNA-binding motif proteins (RBMX2) found in Metazoa and plants, and similar proteins. Gene IST3 encoding ist3, also termed U2 snRNP protein SNU17 (Snu17p), is a novel yeast Saccharomyces cerevisiae protein required for the first catalytic step of splicing and for progression of spliceosome assembly. It binds specifically to the U2 snRNP and is an intrinsic component of prespliceosomes and spliceosomes. Yeast ist3 contains an atypical RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). In the yeast pre-mRNA retention and splicing complex, the atypical RRM of ist3 functions as a scaffold that organizes the other two constituents, Bud13p (bud site selection 13) and Pml1p (pre-mRNA leakage 1). Fission yeast Schizosaccharomyces pombe gene cwf29 encoding ist3, also termed cell cycle control protein cwf29, is an RNA-binding protein complexed with cdc5 protein 29. It also contains one RRM. The biological function of RBMX2 remains unclear. It shows high sequence similarity to yeast ist3 protein and harbors one RRM as well. . Length = 89

>gnl|CDD|240729 cd12283, RRM1_RBM39_like, RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           V+V  L L + + +  E   K G V +DV       ++  D  ++  KG A   +  +ES
Sbjct: 2   VFVMQLSLKVRERDLYEFFSKAGKV-RDV-------RIIRDRNSRRSKGVAYVEFYDEES 53

Query: 278 VDLALSILDGYEIRGKKIKV 297
           V LAL  L G  + G+ I V
Sbjct: 54  VPLALG-LTGQRLLGQPIMV 72

This subfamily corresponds to the RRM1 of RNA-binding protein 39 (RBM39), RNA-binding protein 23 (RBM23) and similar proteins. RBM39 (also termed HCC1) is a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|240729 cd12283, RRM1_RBM39_like, RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V+V  L L + + +  E   K G V +DV       ++  D  ++  KG A   +  +ES
Sbjct: 2   VFVMQLSLKVRERDLYEFFSKAGKV-RDV-------RIIRDRNSRRSKGVAYVEFYDEES 53

Query: 563 VDLALSILDGYEIRGKKIKV 582
           V LAL  L G  + G+ I V
Sbjct: 54  VPLALG-LTGQRLLGQPIMV 72

This subfamily corresponds to the RRM1 of RNA-binding protein 39 (RBM39), RNA-binding protein 23 (RBM23) and similar proteins. RBM39 (also termed HCC1) is a nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Although the cellular function of RBM23 remains unclear, it shows high sequence homology to RBM39 and contains two RRMs. It may possibly function as a pre-mRNA splicing factor. . Length = 73

>gnl|CDD|240742 cd12296, RRM1_Prp24, RNA recognition motif 1 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
           + VKNL       KD T     +  +R+    CG +++V + +     VA I F+  + A
Sbjct: 3   VKVKNL------PKDTT-----ENKIRQFFKDCGEIREVKIVESEGGLVAVIEFETEDEA 51

This subfamily corresponds to the RRM1 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 71

>gnl|CDD|240742 cd12296, RRM1_Prp24, RNA recognition motif 1 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696
           + VKNL       KD T     +  +R+    CG +++V + +     VA I F+  + A
Sbjct: 3   VKVKNL------PKDTT-----ENKIRQFFKDCGEIREVKIVESEGGLVAVIEFETEDEA 51

This subfamily corresponds to the RRM1 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation. . Length = 71

>gnl|CDD|240789 cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 18/83 (21%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMK-DVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           K++V NLP   T EE   + +K G V + DV      +K Y                 ++
Sbjct: 1   KLFVGNLPDATTSEELRALFEKYGTVTECDV------VKNY-----------GFVHMEEE 43

Query: 276 ESVDLALSILDGYEIRGKKIKVE 298
           E  + A+  L+GYE  GK+I VE
Sbjct: 44  EDAEDAIKALNGYEFMGKRINVE 66

This subfamily corresponds to the RRM in CoAA (also known as RBM14 or PSP2) and RNA-binding protein 4 (RBM4). CoAA is a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner, and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. RBM4 is a ubiquitously expressed splicing factor with two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may also function as a translational regulator of stress-associated mRNAs as well as play a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RRMs, a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. This family also includes Drosophila RNA-binding protein lark (Dlark), a homolog of human RBM4. It plays an important role in embryonic development and in the circadian regulation of adult eclosion. Dlark shares high sequence similarity with RBM4 at the N-terminal region. However, Dlark has three proline-rich segments instead of three alanine-rich segments within the C-terminal region. . Length = 66

>gnl|CDD|240789 cd12343, RRM1_2_CoAA_like, RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 18/83 (21%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMK-DVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           K++V NLP   T EE   + +K G V + DV      +K Y                 ++
Sbjct: 1   KLFVGNLPDATTSEELRALFEKYGTVTECDV------VKNY-----------GFVHMEEE 43

Query: 561 ESVDLALSILDGYEIRGKKIKVE 583
           E  + A+  L+GYE  GK+I VE
Sbjct: 44  EDAEDAIKALNGYEFMGKRINVE 66

This subfamily corresponds to the RRM in CoAA (also known as RBM14 or PSP2) and RNA-binding protein 4 (RBM4). CoAA is a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner, and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. RBM4 is a ubiquitously expressed splicing factor with two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may also function as a translational regulator of stress-associated mRNAs as well as play a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RRMs, a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. This family also includes Drosophila RNA-binding protein lark (Dlark), a homolog of human RBM4. It plays an important role in embryonic development and in the circadian regulation of adult eclosion. Dlark shares high sequence similarity with RBM4 at the N-terminal region. However, Dlark has three proline-rich segments instead of three alanine-rich segments within the C-terminal region. . Length = 66

>gnl|CDD|241095 cd12651, RRM2_SXL, RNA recognition motif 2 in Drosophila sex-lethal (SXL) and similar proteins

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T +YV+NLP  LT++E  ++ +  G +   V  N ++ K    P     +G A   Y K+
Sbjct: 1   TNLYVTNLPRQLTEDELRKIFEAYGNI---VQCNLLRDKSTGLP-----RGVAFVRYDKR 52

Query: 276 ESVDLALSILDG 287
           E    A+S L+G
Sbjct: 53  EEAQAAISSLNG 64

This subfamily corresponds to the RRM2 of the sex-lethal protein (SXL) which governs sexual differentiation and X chromosome dosage compensation in Drosophila melanogaster. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds also to its own pre-mRNA and promotes female-specific alternative splicing. SXL contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), that show high preference to bind single-stranded, uridine-rich target RNA transcripts. . Length = 79

>gnl|CDD|241095 cd12651, RRM2_SXL, RNA recognition motif 2 in Drosophila sex-lethal (SXL) and similar proteins

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           T +YV+NLP  LT++E  ++ +  G +   V  N ++ K    P     +G A   Y K+
Sbjct: 1   TNLYVTNLPRQLTEDELRKIFEAYGNI---VQCNLLRDKSTGLP-----RGVAFVRYDKR 52

Query: 561 ESVDLALSILDG 572
           E    A+S L+G
Sbjct: 53  EEAQAAISSLNG 64

This subfamily corresponds to the RRM2 of the sex-lethal protein (SXL) which governs sexual differentiation and X chromosome dosage compensation in Drosophila melanogaster. It induces female-specific alternative splicing of the transformer (tra) pre-mRNA by binding to the tra uridine-rich polypyrimidine tract at the non-sex-specific 3' splice site during the sex-determination process. SXL binds also to its own pre-mRNA and promotes female-specific alternative splicing. SXL contains an N-terminal Gly/Asn-rich domain that may be responsible for the protein-protein interaction, and tandem RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), that show high preference to bind single-stranded, uridine-rich target RNA transcripts. . Length = 79

>gnl|CDD|240864 cd12418, RRM_Aly_REF_like, RNA recognition motif in the Aly/REF family

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 14/75 (18%)

Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-DKH--PEGVAQIFFK 406
           + + V NL        DVT     ++DL E   + G VKKV ++ D+    EG A + F+
Sbjct: 1   TRLRVSNL------HYDVT-----EEDLEELFGRVGEVKKVKINYDRSGRSEGTADVVFE 49

Query: 407 EPEAADACRELLNGR 421
           + E A+   +  NG 
Sbjct: 50  KREDAERAIKQFNGV 64

This subfamily corresponds to the RRM of Aly/REF family which includes THO complex subunit 4 (THOC4, also termed Aly/REF), S6K1 Aly/REF-like target (SKAR, also termed PDIP3 or PDIP46) and similar proteins. THOC4 is an mRNA transporter protein with a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It is involved in RNA transportation from the nucleus, and was initially identified as a transcription coactivator of LEF-1 and AML-1 for the TCRalpha enhancer function. In addition, THOC4 specifically binds to rhesus (RH) promoter in erythroid, and might be a novel transcription cofactor for erythroid-specific genes. SKAR shows high sequence homology with THOC4 and possesses one RRM as well. SKAR is widely expressed and localizes to the nucleus. It may be a critical player in the function of S6K1 in cell and organism growth control by binding the activated, hyperphosphorylated form of S6K1 but not S6K2. Furthermore, SKAR functions as a protein partner of the p50 subunit of DNA polymerase delta. In addition, SKAR may have particular importance in pancreatic beta cell size determination and insulin secretion. . Length = 75

>gnl|CDD|240864 cd12418, RRM_Aly_REF_like, RNA recognition motif in the Aly/REF family

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 14/75 (18%)

Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-DKH--PEGVAQIFFK 691
           + + V NL        DVT     ++DL E   + G VKKV ++ D+    EG A + F+
Sbjct: 1   TRLRVSNL------HYDVT-----EEDLEELFGRVGEVKKVKINYDRSGRSEGTADVVFE 49

Query: 692 EPEAADACRELLNGR 706
           + E A+   +  NG 
Sbjct: 50  KREDAERAIKQFNGV 64

This subfamily corresponds to the RRM of Aly/REF family which includes THO complex subunit 4 (THOC4, also termed Aly/REF), S6K1 Aly/REF-like target (SKAR, also termed PDIP3 or PDIP46) and similar proteins. THOC4 is an mRNA transporter protein with a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). It is involved in RNA transportation from the nucleus, and was initially identified as a transcription coactivator of LEF-1 and AML-1 for the TCRalpha enhancer function. In addition, THOC4 specifically binds to rhesus (RH) promoter in erythroid, and might be a novel transcription cofactor for erythroid-specific genes. SKAR shows high sequence homology with THOC4 and possesses one RRM as well. SKAR is widely expressed and localizes to the nucleus. It may be a critical player in the function of S6K1 in cell and organism growth control by binding the activated, hyperphosphorylated form of S6K1 but not S6K2. Furthermore, SKAR functions as a protein partner of the p50 subunit of DNA polymerase delta. In addition, SKAR may have particular importance in pancreatic beta cell size determination and insulin secretion. . Length = 75

>gnl|CDD|240816 cd12370, RRM1_PUF60, RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           +VYV ++  +L ++   +     G +          I +  DP T   KG A   Y   E
Sbjct: 2   RVYVGSISFELGEDTIRQAFSPFGPIKS--------IDMSWDPVTMKHKGFAFVEYEVPE 53

Query: 277 SVDLALSILDGYEIRGKKIKVER 299
           +  LAL  ++G  + G+ IKV R
Sbjct: 54  AAQLALEQMNGVMLGGRNIKVGR 76

This subfamily corresponds to the RRM1 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 76

>gnl|CDD|240816 cd12370, RRM1_PUF60, RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           +VYV ++  +L ++   +     G +          I +  DP T   KG A   Y   E
Sbjct: 2   RVYVGSISFELGEDTIRQAFSPFGPIKS--------IDMSWDPVTMKHKGFAFVEYEVPE 53

Query: 562 SVDLALSILDGYEIRGKKIKVER 584
           +  LAL  ++G  + G+ IKV R
Sbjct: 54  AAQLALEQMNGVMLGGRNIKVGR 76

This subfamily corresponds to the RRM1 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 76

>gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I polyadenylate-binding proteins

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T VYV NL  D+  E+  E+  K G +           K+  D   K  KG     +   
Sbjct: 2   TNVYVKNLGEDMDDEKLKELFGKYGKI--------TSAKVMKDDEGKS-KGFGFVNFENH 52

Query: 276 ESVDLALSILDGYEIRGKKIKVERA 300
           E+   A+  L+G E+ GKK+ V RA
Sbjct: 53  EAAQKAVEELNGKEVNGKKLYVGRA 77

This subfamily corresponds to the RRM3 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is an ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80

>gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I polyadenylate-binding proteins

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           T VYV NL  D+  E+  E+  K G +           K+  D   K  KG     +   
Sbjct: 2   TNVYVKNLGEDMDDEKLKELFGKYGKI--------TSAKVMKDDEGKS-KGFGFVNFENH 52

Query: 561 ESVDLALSILDGYEIRGKKIKVERA 585
           E+   A+  L+G E+ GKK+ V RA
Sbjct: 53  EAAQKAVEELNGKEVNGKKLYVGRA 77

This subfamily corresponds to the RRM3 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is an ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80

>gnl|CDD|240817 cd12371, RRM2_PUF60, RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
            ++YV+++  DL++++   V +  G +            L  DP T   KG     Y   
Sbjct: 1   NRIYVASVHPDLSEDDIKSVFEAFGKI--------KSCSLAPDPETGKHKGYGFIEYENP 52

Query: 276 ESVDLALSILDGYEIRGKKIKVERA 300
           +S   A++ ++ +++ G++++V +A
Sbjct: 53  QSAQDAIASMNLFDLGGQQLRVGKA 77

This subfamily corresponds to the RRM2 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 77

>gnl|CDD|240817 cd12371, RRM2_PUF60, RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
            ++YV+++  DL++++   V +  G +            L  DP T   KG     Y   
Sbjct: 1   NRIYVASVHPDLSEDDIKSVFEAFGKI--------KSCSLAPDPETGKHKGYGFIEYENP 52

Query: 561 ESVDLALSILDGYEIRGKKIKVERA 585
           +S   A++ ++ +++ G++++V +A
Sbjct: 53  QSAQDAIASMNLFDLGGQQLRVGKA 77

This subfamily corresponds to the RRM2 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1). PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. Research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 77

>gnl|CDD|240838 cd12392, RRM2_SART3, RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           E  K++VS LP  +T+EE  ++ +K G V+K V       +L T+   K  KG A   Y 
Sbjct: 1   EKHKLFVSGLPFSVTKEELEKLFKKHG-VVKSV-------RLVTNRSGKP-KGLAYVEYE 51

Query: 274 KKESVDLALSILDGYEIRGKKIKV 297
            + S   A+  +DG EI+ K I V
Sbjct: 52  NESSASQAVLKMDGTEIKEKTISV 75

This subfamily corresponds to the RRM2 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), is an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81

>gnl|CDD|240838 cd12392, RRM2_SART3, RNA recognition motif 2 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           E  K++VS LP  +T+EE  ++ +K G V+K V       +L T+   K  KG A   Y 
Sbjct: 1   EKHKLFVSGLPFSVTKEELEKLFKKHG-VVKSV-------RLVTNRSGKP-KGLAYVEYE 51

Query: 559 KKESVDLALSILDGYEIRGKKIKV 582
            + S   A+  +DG EI+ K I V
Sbjct: 52  NESSASQAVLKMDGTEIKEKTISV 75

This subfamily corresponds to the RRM2 of SART3, also termed Tat-interacting protein of 110 kDa (Tip110), is an RNA-binding protein expressed in the nucleus of the majority of proliferating cells, including normal cells and malignant cells, but not in normal tissues except for the testes and fetal liver. It is involved in the regulation of mRNA splicing probably via its complex formation with RNA-binding protein with a serine-rich domain (RNPS1), a pre-mRNA-splicing factor. SART3 has also been identified as a nuclear Tat-interacting protein that regulates Tat transactivation activity through direct interaction and functions as an important cellular factor for HIV-1 gene expression and viral replication. In addition, SART3 is required for U6 snRNP targeting to Cajal bodies. It binds specifically and directly to the U6 snRNA, interacts transiently with the U6 and U4/U6 snRNPs, and promotes the reassembly of U4/U6 snRNPs after splicing in vitro. SART3 contains an N-terminal half-a-tetratricopeptide repeat (HAT)-rich domain, a nuclearlocalization signal (NLS) domain, and two C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). . Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	773
KOG1548|consensus	382		100.0
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	100.0
KOG1548|consensus	382		100.0
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	100.0
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	100.0
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	100.0
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	100.0
KOG0123|consensus	369		100.0
KOG0127|consensus	678		100.0
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	100.0
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	100.0
KOG0117|consensus	506		100.0
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	100.0
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	100.0
KOG0124|consensus	544		100.0
KOG0145|consensus	360		100.0
KOG0147|consensus	549		100.0
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.97
KOG0145|consensus	360		99.97
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.97
KOG0110|consensus	725		99.97
KOG0117|consensus	506		99.96
KOG0148|consensus	321		99.96
KOG0144|consensus	510		99.95
KOG0127|consensus	678		99.95
KOG0148|consensus	321		99.94
KOG0123|consensus	369		99.94
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.93
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.92
KOG0144|consensus	510		99.91
KOG1190|consensus	492		99.91
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.91
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.91
KOG0110|consensus	725		99.9
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.9
KOG0120|consensus	500		99.89
KOG4212|consensus	608		99.88
KOG0147|consensus	549		99.87
KOG0131|consensus	203		99.85
KOG0131|consensus	203		99.82
KOG1456|consensus	494		99.76
KOG0109|consensus	346		99.75
KOG0146|consensus	371		99.75
KOG1190|consensus	492		99.72
KOG4211|consensus	510		99.71
KOG0124|consensus	544		99.7
KOG0120|consensus	500		99.68
KOG0109|consensus	346		99.68
KOG0146|consensus	371		99.62
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.56
KOG4205|consensus	311		99.55
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.54
KOG4206|consensus	221		99.52
KOG1365|consensus	508		99.5
KOG4206|consensus	221		99.5
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.45
KOG0105|consensus	241		99.44
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.43
KOG0105|consensus	241		99.41
KOG0121|consensus	153		99.4
KOG0122|consensus	270		99.4
KOG0122|consensus	270		99.39
KOG4205|consensus	311		99.39
KOG1456|consensus	494		99.37
KOG0126|consensus	219		99.36
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.35
KOG0126|consensus	219		99.32
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.31
KOG1457|consensus	284		99.31
PLN03120	260	nucleic acid binding protein; Provisional	99.3
KOG1457|consensus	284		99.29
KOG4211|consensus	510		99.28
KOG0106|consensus	216		99.28
KOG0107|consensus	195		99.27
PLN03120	260	nucleic acid binding protein; Provisional	99.25
KOG0121|consensus	153		99.25
PLN03213	759	repressor of silencing 3; Provisional	99.24
KOG0125|consensus	376		99.24
KOG0149|consensus	247		99.24
KOG1365|consensus	508		99.24
KOG0114|consensus	124		99.23
PLN03121	243	nucleic acid binding protein; Provisional	99.23
KOG0107|consensus	195		99.22
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.22
KOG4212|consensus	608		99.21
KOG4207|consensus	256		99.19
PLN03213	759	repressor of silencing 3; Provisional	99.19
KOG0149|consensus	247		99.18
smart00362	72	RRM_2 RNA recognition motif.	99.18
smart00362	72	RRM_2 RNA recognition motif.	99.17
KOG4207|consensus	256		99.17
KOG0130|consensus	170		99.17
KOG0113|consensus	335		99.15
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.15
PLN03121	243	nucleic acid binding protein; Provisional	99.15
smart00360	71	RRM RNA recognition motif.	99.14
KOG0106|consensus	216		99.13
smart00360	71	RRM RNA recognition motif.	99.13
KOG0111|consensus	298		99.13
KOG0114|consensus	124		99.13
KOG0130|consensus	170		99.12
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.11
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.11
KOG0125|consensus	376		99.11
KOG0113|consensus	335		99.11
smart00361	70	RRM_1 RNA recognition motif.	99.09
KOG0108|consensus	435		99.09
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.06
KOG0108|consensus	435		99.05
KOG0111|consensus	298		99.03
smart00361	70	RRM_1 RNA recognition motif.	98.92
KOG0128|consensus	881		98.89
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.88
KOG1996|consensus	378		98.88
KOG4307|consensus	944		98.85
KOG4208|consensus	214		98.79
KOG4307|consensus	944		98.79
KOG1995|consensus	351		98.78
KOG4208|consensus	214		98.68
KOG0415|consensus	479		98.63
KOG0415|consensus	479		98.6
KOG0128|consensus	881		98.6
KOG1995|consensus	351		98.55
KOG4660|consensus	549		98.53
KOG0226|consensus	290		98.5
KOG4661|consensus	940		98.49
KOG0533|consensus	243		98.44
KOG0129|consensus	520		98.42
KOG4661|consensus	940		98.41
KOG0129|consensus	520		98.36
KOG0132|consensus	894		98.35
KOG0132|consensus	894		98.33
KOG0153|consensus	377		98.28
KOG4209|consensus	231		98.28
KOG0533|consensus	243		98.27
KOG4454|consensus	267		98.26
KOG4454|consensus	267		98.24
KOG0226|consensus	290		98.2
KOG0153|consensus	377		98.16
KOG1996|consensus	378		98.13
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	98.11
KOG0116|consensus	419		98.08
KOG4209|consensus	231		98.08
KOG4210|consensus	285		98.04
KOG0151|consensus	877		97.98
KOG0116|consensus	419		97.96
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.95
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	97.94
KOG0151|consensus	877		97.94
KOG0112|consensus	975		97.94
KOG2202|consensus	260		97.92
KOG0112|consensus	975		97.86
KOG4676|consensus	479		97.84
KOG4210|consensus	285		97.72
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	97.7
KOG4660|consensus	549		97.67
KOG2193|consensus	584		97.31
KOG2202|consensus	260		97.31
KOG4676|consensus	479		97.11
KOG2314|consensus	698		97.1
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	97.02
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.98
KOG2193|consensus	584		96.95
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	96.83
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	96.78
KOG2314|consensus	698		96.66
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.65
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	96.45
KOG0115|consensus	275		96.45
KOG3152|consensus	278		96.42
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	96.21
KOG3152|consensus	278		96.19
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	96.02
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	96.02
KOG4849|consensus	498		95.87
KOG4849|consensus	498		95.86
KOG0115|consensus	275		95.23
KOG1855|consensus	484		95.22
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	95.03
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	94.94
KOG1855|consensus	484		94.6
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	94.52
KOG2416|consensus	718		94.35
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	94.34
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	94.29
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	94.24
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	93.81
KOG2416|consensus	718		92.89
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	92.11
KOG4285|consensus	350		91.91
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	91.86
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	91.61
KOG2068|consensus	327		86.21
KOG4285|consensus	350		85.36
KOG2253|consensus	668		85.32
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	85.25
KOG2068|consensus	327		85.06
KOG4574|consensus	1007		84.94
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	84.93
KOG4574|consensus	1007		83.73
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	83.18
KOG0804|consensus	493		82.53
KOG2591|consensus	684		82.23
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	81.49

>KOG1548|consensus

Probab=100.00  E-value=3.3e-61  Score=488.58  Aligned_cols=332  Identities=48%  Similarity=0.859  Sum_probs=288.1

Q ss_pred             CCCcEEEEeCcCCceecccChHHHHHHHhhcCcccCCCCCCCCCCchhhhhhhhhccccCCCCCCCCCccccccCCCCCC
Q psy2160         122 TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKR  201 (773)
Q Consensus       122 ~dg~~~~~d~~~~~w~p~~~~~~~~~~q~~y~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~k~~~~~~~~~  201 (773)
                      .++..|+||.++++|||+|+++||+.||++|||+. +.+.+.+........+++++....     +.++.+.+...+.++
T Consensus        46 ~~~edy~wd~~k~~W~pki~~df~a~yq~nyg~~~-d~s~~~~e~~e~~~a~~~~e~e~~-----k~~~r~~~~~~~~kk  119 (382)
T KOG1548|consen   46 SETEDYIWDDEKKAWVPKIPEDFIAEYQANYGFED-DTSADATELEEDGHAKKKKEDELL-----KNPKRKYKVGKGEKK  119 (382)
T ss_pred             CccccceeehhhccccCCCchhHHHhhhcccCccc-cccccchhhhhhhhhhhcccchhh-----hcccccccCcccccc
Confidence            34444999999999999999999999999999994 332333222211112222111110     112222334456677


Q ss_pred             CCCCCCCccCCC-CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHH
Q psy2160         202 KPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDL  280 (773)
Q Consensus       202 ~~~~~~~~~~~~-~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~  280 (773)
                      .+.++.|+.+.| .|++|||+|||.++|.+++.++|++||.|+.||+||+|+|+||++.+ |+.+|.|+|+|.+.+|+.+
T Consensus       120 ~~~e~~~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeL  198 (382)
T KOG1548|consen  120 QKEEGEWFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVEL  198 (382)
T ss_pred             ccCCCcccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHH
Confidence            777888999999 99999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHcCCceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCc
Q psy2160         281 ALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDP  360 (773)
Q Consensus       281 Al~~lng~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p  360 (773)
                      |+++||+..|+|+.|+|++|+|++++. ++++.+. +.+++.+++++++++++++|.|+.....+.+..++|+|+|||+|
T Consensus       199 A~~ilDe~~~rg~~~rVerAkfq~Kge-~~~~~k~-k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp  276 (382)
T KOG1548|consen  199 AIKILDEDELRGKKLRVERAKFQMKGE-YDASKKE-KGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTP  276 (382)
T ss_pred             HHHHhCcccccCcEEEEehhhhhhccC-cCccccc-ccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCH
Confidence            999999999999999999999999999 9998876 55677888999999999999999988888999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccc
Q psy2160         361 ALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK  440 (773)
Q Consensus       361 ~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~  440 (773)
                      ..+..+|.++++|+++|++.|.+||.|.+|+++++||.|++.|.|.+.+.|..||+.|+||+|+||+|.+++|+|+++|+
T Consensus       277 ~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~  356 (382)
T KOG1548|consen  277 EDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ  356 (382)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHhhhh
Q psy2160         441 IQETAEEREARLKKWETFLGKK  462 (773)
Q Consensus       441 ~~~~~~e~~~r~~~~~~~l~~~  462 (773)
                      ++++.++...|+..|..|+...
T Consensus       357 ~eet~~D~e~e~~~~e~f~~~~  378 (382)
T KOG1548|consen  357 TEETNEDEEEELKRLEKFAAEL  378 (382)
T ss_pred             eecccchHHHHHHHHHHHHhhh
Confidence            9988777777777777776543

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=100.00  E-value=1.2e-46  Score=439.40  Aligned_cols=353  Identities=23%  Similarity=0.367  Sum_probs=287.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||.++|+++|+++|++||.|.+        |+|++|..|++++|||||+|.+.++|.+||..||+..|.|++|
T Consensus         1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~--------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i   72 (562)
T TIGR01628         1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLS--------VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI   72 (562)
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence            47999999999999999999999999998        9999999999999999999999999999999999999999999


Q ss_pred             EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160         296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ  375 (773)
Q Consensus       296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e  375 (773)
                      +|.++.       .+++.+                               .....+|||+||  +..+++         +
T Consensus        73 ~i~~s~-------~~~~~~-------------------------------~~~~~~vfV~nL--p~~~~~---------~  103 (562)
T TIGR01628        73 RIMWSQ-------RDPSLR-------------------------------RSGVGNIFVKNL--DKSVDN---------K  103 (562)
T ss_pred             Eeeccc-------cccccc-------------------------------ccCCCceEEcCC--CccCCH---------H
Confidence            997754       222221                               122457999999  444443         8


Q ss_pred             HHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHH
Q psy2160         376 DLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL  452 (773)
Q Consensus       376 dL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~  452 (773)
                      +|+++|++||.|..|.+..   +.++|+|||+|.+.++|.+|+..+||..+.|+.|.+..+..+...             
T Consensus       104 ~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~-------------  170 (562)
T TIGR01628       104 ALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHER-------------  170 (562)
T ss_pred             HHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccc-------------
Confidence            8999999999999987753   357899999999999999999999999999999998654322100             


Q ss_pred             HHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccC
Q psy2160         453 KKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVD  532 (773)
Q Consensus       453 ~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~  532 (773)
                                                         .     .......++|||+|||.++|+++|+++|+.||.|.    
T Consensus       171 -----------------------------------~-----~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~----  206 (562)
T TIGR01628       171 -----------------------------------E-----AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEIT----  206 (562)
T ss_pred             -----------------------------------c-----cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEE----
Confidence                                               0     00123467899999999999999999999999998    


Q ss_pred             CCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec----CeEEEEEEccccccCCcCCCCCCchhhhHHHH
Q psy2160         533 TNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR----GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDL  608 (773)
Q Consensus       533 ~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~----g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~  608 (773)
                          ++.++.+.. |.++|||||.|.+.++|.+|++.|||..|.    |+.|.|.++....             .+...+
T Consensus       207 ----~~~i~~~~~-g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~-------------er~~~~  268 (562)
T TIGR01628       207 ----SAAVMKDGS-GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA-------------EREAEL  268 (562)
T ss_pred             ----EEEEEECCC-CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh-------------hhHHHH
Confidence                799999864 889999999999999999999999999999    9999999887321             111111


Q ss_pred             HHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC---CCCCcE
Q psy2160         609 EKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD---KHPEGV  685 (773)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~---~~~~G~  685 (773)
                      .   ..........      .......+|+|+||+..  +++         ++|+++|++||.|++|.|..   +.++|+
T Consensus       269 ~---~~~~~~~~~~------~~~~~~~~l~V~nl~~~--~~~---------~~L~~~F~~~G~i~~~~i~~d~~g~~~g~  328 (562)
T TIGR01628       269 R---RKFEELQQER------KMKAQGVNLYVKNLDDT--VTD---------EKLRELFSECGEITSAKVMLDEKGVSRGF  328 (562)
T ss_pred             H---hhHHhhhhhh------hcccCCCEEEEeCCCCc--cCH---------HHHHHHHHhcCCeEEEEEEECCCCCcCCe
Confidence            1   1111110000      01123578999999765  443         89999999999999997753   567899


Q ss_pred             EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160         686 AQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  720 (773)
Q Consensus       686 afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg  720 (773)
                      |||+|.++++|.+|+..|||+.|+||.|.|.+...
T Consensus       329 gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~  363 (562)
T TIGR01628       329 GFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR  363 (562)
T ss_pred             EEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence            99999999999999999999999999999998653

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG1548|consensus

Probab=100.00  E-value=3.4e-45  Score=371.99  Aligned_cols=246  Identities=51%  Similarity=0.902  Sum_probs=221.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...++.|||+|||.++|.+++.++|++||.|..+++|++|.|+||++.+ |..+|.|+|+|...+++.+|+.+|++..|+
T Consensus       131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r  209 (382)
T KOG1548|consen  131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR  209 (382)
T ss_pred             cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence            4568899999999999999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160         577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  656 (773)
Q Consensus       577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~  656 (773)
                      |+.|+|+.|+|++++.. ++..+. +.+....++++.++.++.+|.++..........++|+|+|||+|.++..+|.+++
T Consensus       210 g~~~rVerAkfq~Kge~-~~~~k~-k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~  287 (382)
T KOG1548|consen  210 GKKLRVERAKFQMKGEY-DASKKE-KGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN  287 (382)
T ss_pred             CcEEEEehhhhhhccCc-Cccccc-ccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence            99999999999998873 333222 2234556778888999999999987777788899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcccccccccHHHHHHH
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREAR  736 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~~~~~~~e~~~~R  736 (773)
                      +|+++|+++|++||.|.+|+|++.+|.|++.|.|.+.++|..||+.|+||+|+||+|+++.|||+++|++.++.++++.|
T Consensus       288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~eet~~D~e~e  367 (382)
T KOG1548|consen  288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTEETNEDEEEE  367 (382)
T ss_pred             HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeeecccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998775555555


Q ss_pred             ---HHHHHHHHh
Q psy2160         737 ---LKKWETFLE  745 (773)
Q Consensus       737 ---l~~~~~~le  745 (773)
                         +++|..|||
T Consensus       368 ~~~~e~f~~~~e  379 (382)
T KOG1548|consen  368 LKRLEKFAAELE  379 (382)
T ss_pred             HHHHHHHHhhhh
Confidence               555555554

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=100.00  E-value=2.8e-40  Score=377.05  Aligned_cols=422  Identities=18%  Similarity=0.215  Sum_probs=276.2

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHH--cCCceecC
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSI--LDGYEIRG  292 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~--lng~~l~g  292 (773)
                      +..|||+|||.++|+++|+++|++||.|..        |+|+++      +|||||+|.+.++|..||+.  +++..|.|
T Consensus         2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~--------v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g   67 (481)
T TIGR01649         2 SPVVHVRNLPQDVVEADLVEALIPFGPVSY--------VMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRG   67 (481)
T ss_pred             ccEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcC
Confidence            478999999999999999999999999998        888853      57999999999999999986  47889999


Q ss_pred             eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHH
Q psy2160         293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  372 (773)
Q Consensus       293 ~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~e  372 (773)
                      ++|+|+++.......  ...                         .+ ........-..|+|.||..+  +++       
T Consensus        68 ~~l~v~~s~~~~~~~--~~~-------------------------~~-~~~~~~~~~~~v~v~nl~~~--vt~-------  110 (481)
T TIGR01649        68 QPAFFNYSTSQEIKR--DGN-------------------------SD-FDSAGPNKVLRVIVENPMYP--ITL-------  110 (481)
T ss_pred             eEEEEEecCCccccc--CCC-------------------------Cc-ccCCCCCceEEEEEcCCCCC--CCH-------
Confidence            999999886321000  000                         00 00001122346899999433  332       


Q ss_pred             HHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCcc-----------c
Q psy2160         373 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKTR-----------Y  439 (773)
Q Consensus       373 i~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~~-----------~  439 (773)
                        ++|+++|++||.|.+|.++.....++|||+|.+.++|.+|+..|||..+.|  +.|.+.+.....-           |
T Consensus       111 --~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dy  188 (481)
T TIGR01649       111 --DVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDY  188 (481)
T ss_pred             --HHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCC
Confidence              789999999999999988766556899999999999999999999999854  5788877543221           1


Q ss_pred             ccchhHHHHHHHHH-----HHHHHhhhhh-hhhhhhcccC-C--------CCCCCCCCchHHhh------hhH----h--
Q psy2160         440 KIQETAEEREARLK-----KWETFLGKKI-KVERAKFTMK-G--------EAYDPKLKPKKKRK------KDL----E--  492 (773)
Q Consensus       440 ~~~~~~~e~~~r~~-----~~~~~l~~~~-~~~~~~~~~~-G--------~~~~p~~~~~~~r~------~~~----~--  492 (773)
                      ..+....+...-+.     .+........ ......+... |        ...+|.. ++..+.      ...    .  
T Consensus       189 t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  267 (481)
T TIGR01649       189 TNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPH-GPPSRYRPAYEAAPLAPAISSY  267 (481)
T ss_pred             cCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcc-cCCCCCcccccccccCcccccc
Confidence            11000000000000     0000000000 0000000000 0        0000000 000000      000    0  


Q ss_pred             hhhcCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         493 KLKKAQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       493 ~~~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ......++++|||+|||. .+|+++|+++|+.||.|.        +|+|+++.     +|+|||+|.+.++|..||..||
T Consensus       268 ~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~--------~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln  334 (481)
T TIGR01649       268 GPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVE--------RVKFMKNK-----KETALIEMADPYQAQLALTHLN  334 (481)
T ss_pred             CCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC
Confidence            001123568999999998 699999999999999999        89999873     6999999999999999999999


Q ss_pred             CceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcc--ccCCCCCCCcEEEEecCCCccccc
Q psy2160         572 GYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK--MRGERSKNESVIIVKNLFDPALFD  649 (773)
Q Consensus       572 g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ikNl~~~~~~~  649 (773)
                      |..|.|++|+|.+++...................   ...  ............  .......++++|+|+||+..  ++
T Consensus       335 g~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~---~d~--~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~--~t  407 (481)
T TIGR01649       335 GVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSY---KDY--SSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLS--VS  407 (481)
T ss_pred             CCEECCceEEEEEcccccccCCCCCcCcCCCccc---ccc--cCCccccCCCcccccccccCCCCcEEEEecCCCC--CC
Confidence            9999999999999874321000000000000000   000  000000000000  00011245789999999765  44


Q ss_pred             cchhhHHHHHHHHHHHHhcCCc--eeEEEecCC--CCCcEEEEEecCHHHHHHHHHHhCCceeCCeE------EEEEEec
Q psy2160         650 KDVTLILEYQQDLREECSKCGH--VKKVVLHDK--HPEGVAQIFFKEPEAADACRELLNGRWFGQRQ------ITAETWD  719 (773)
Q Consensus       650 ~d~~~~~~l~edl~~~f~~fG~--V~~v~i~~~--~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~------l~v~~~d  719 (773)
                      +         ++|+++|+.||.  |.+|.+++.  ...|+|||+|.+.++|..|+..|||..++|+.      |+|+|..
T Consensus       408 e---------e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~  478 (481)
T TIGR01649       408 E---------EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST  478 (481)
T ss_pred             H---------HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence            3         899999999998  888888652  34699999999999999999999999999995      9998853

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=100.00  E-value=2.5e-39  Score=366.46  Aligned_cols=307  Identities=25%  Similarity=0.425  Sum_probs=235.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++++++|+++|++||.|.+        |+|++|+.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus       106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~s--------V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR  177 (612)
T TIGR01645       106 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR  177 (612)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHccCCEEE--------EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence            5689999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|+|.++.                                                      ++......          
T Consensus       178 ~IkV~rp~------------------------------------------------------~~p~a~~~----------  193 (612)
T TIGR01645       178 NIKVGRPS------------------------------------------------------NMPQAQPI----------  193 (612)
T ss_pred             eeeecccc------------------------------------------------------cccccccc----------
Confidence            99994321                                                      00000000          


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                                         .                      ..+.                                  
T Consensus       194 -------------------~----------------------~~~~----------------------------------  198 (612)
T TIGR01645       194 -------------------I----------------------DMVQ----------------------------------  198 (612)
T ss_pred             -------------------c----------------------cccc----------------------------------
Confidence                               0                      0000                                  


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                               ......++|||+|||+++++++|+++|+.||.|.     
T Consensus       199 -----------------------------------------~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~-----  232 (612)
T TIGR01645       199 -----------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-----  232 (612)
T ss_pred             -----------------------------------------ccccccceEEeecCCCCCCHHHHHHHHhhcCCee-----
Confidence                                                     0001246899999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccC----------------------
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKG----------------------  591 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~----------------------  591 (773)
                         +|+|.+|+.+|.++|||||.|.+.++|..||..|||..|+|+.|+|.++......                      
T Consensus       233 ---svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~pa~~~~~p~aaa~Aaaaa~  309 (612)
T TIGR01645       233 ---KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAAT  309 (612)
T ss_pred             ---EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCCCCCCCCchHHHHHHHHhh
Confidence               8999999999999999999999999999999999999999999999987631000                      


Q ss_pred             ---------------C-----------------------------------------------cC------CC---C---
Q psy2160         592 ---------------E-----------------------------------------------AY------DP---K---  597 (773)
Q Consensus       592 ---------------~-----------------------------------------------~~------~~---~---  597 (773)
                                     .                                               .+      .+   .   
T Consensus       310 a~~~a~~~~~~~a~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (612)
T TIGR01645       310 AKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPS  389 (612)
T ss_pred             hhhhhhhhhhcccccccccCCCccccccccccccccccccccCCcccCCCCCccccccccCCCCcccccCCCCccccccc
Confidence                           0                                               00      00   0   


Q ss_pred             ------C-Cc---------hh----------------------------------------------------hhHHHHH
Q psy2160         598 ------L-KP---------KK----------------------------------------------------KRKKDLE  609 (773)
Q Consensus       598 ------~-~~---------~~----------------------------------------------------~k~~~~~  609 (773)
                            . .+         ..                                                    .+.+..+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (612)
T TIGR01645       390 LVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEK  469 (612)
T ss_pred             cCCCccccCCCcCchhhhcCcccccccccccccccccccchhccccchhhhhhhhhhhcccchhhHHHHhhhhhHHhhhh
Confidence                  0 00         00                                                    0000011


Q ss_pred             HHHHHhhhccCCCCccccCC--------------------CCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcC
Q psy2160         610 KLKKAQEKLFDWRPDKMRGE--------------------RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC  669 (773)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~f  669 (773)
                      .....+..+.+|+++.....                    +...+++|+|+||+++.+++      .+|++||+++|++|
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~rp~~S~vVvL~NMv~~~eld------edl~eDV~eEC~K~  543 (612)
T TIGR01645       470 EGEELQPKLVMNSEDASLASQEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVTPQDID------EFLEGEIREECGKF  543 (612)
T ss_pred             hhhhhcccccccccccccccccccccccchhhHHHHHhhcCCCCCCEEEEeCCCChHHhH------HHHHHHHHHHhhcC
Confidence            11122223445654322111                    12358999999999987664      45789999999999


Q ss_pred             CceeEEEecCCCC--------CcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         670 GHVKKVVLHDKHP--------EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       670 G~V~~v~i~~~~~--------~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                      |.|.+|.|++..+        .|.+||+|.+.++|.+|+..||||+|+||+|.|+|||+..
T Consensus       544 G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~  604 (612)
T TIGR01645       544 GVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQIL  604 (612)
T ss_pred             ceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHH
Confidence            9999999998432        2458999999999999999999999999999999999743

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=100.00  E-value=6.9e-38  Score=345.23  Aligned_cols=307  Identities=20%  Similarity=0.269  Sum_probs=220.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|.+        |+|++|+.||+++|||||+|.+.++|..||..|||..|.|+
T Consensus         2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~   73 (352)
T TIGR01661         2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIES--------CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK   73 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHccCCEEE--------EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence            3589999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|+|.++....  .                                      ....+.|+|.||  |..+.+        
T Consensus        74 ~i~v~~a~~~~--~--------------------------------------~~~~~~l~v~~l--~~~~~~--------  103 (352)
T TIGR01661        74 TIKVSYARPSS--D--------------------------------------SIKGANLYVSGL--PKTMTQ--------  103 (352)
T ss_pred             eEEEEeecccc--c--------------------------------------ccccceEEECCc--cccCCH--------
Confidence            99998875211  0                                      112457999999  334432        


Q ss_pred             HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCcccccchhHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKTRYKIQETAEE  447 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~~~~~~~~~~e  447 (773)
                       ++|+.+|+.||.|..+.+..    +.++|+|||+|.+.++|..|+..|||..+.|  ++|.+.+...............
T Consensus       104 -~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~  182 (352)
T TIGR01661       104 -HELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQ  182 (352)
T ss_pred             -HHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCch
Confidence             88999999999999887653    3478999999999999999999999999987  5677776543221000000000


Q ss_pred             HH--HHHHHHH---------------------------HHhhhhhh-hhhhhcccCC--CCCCCCCCchHHhh--hhHhh
Q psy2160         448 RE--ARLKKWE---------------------------TFLGKKIK-VERAKFTMKG--EAYDPKLKPKKKRK--KDLEK  493 (773)
Q Consensus       448 ~~--~r~~~~~---------------------------~~l~~~~~-~~~~~~~~~G--~~~~p~~~~~~~r~--~~~~~  493 (773)
                      ..  .......                           .+...... ..........  ....|.........  .....
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (352)
T TIGR01661       183 LEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQI  262 (352)
T ss_pred             hhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCC
Confidence            00  0000000                           00000000 0000000000  00000000000000  00000


Q ss_pred             hhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         494 LKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       494 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      ........+|||+|||.++++++|+++|++||.|.        +|+|++|+.||.++|||||+|.+.++|..||..|||.
T Consensus       263 ~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~--------~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~  334 (352)
T TIGR01661       263 AASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ--------NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGY  334 (352)
T ss_pred             CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCC
Confidence            00122345799999999999999999999999999        8999999999999999999999999999999999999


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|+.|+|.++..
T Consensus       335 ~~~gr~i~V~~~~~  348 (352)
T TIGR01661       335 TLGNRVLQVSFKTN  348 (352)
T ss_pred             EECCeEEEEEEccC
Confidence            99999999999873

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=100.00  E-value=1.3e-37  Score=355.01  Aligned_cols=311  Identities=27%  Similarity=0.401  Sum_probs=238.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|.++|++||.|..        |+|++|..||+++|||||+|.+.++|.+||. |+|..|.|+
T Consensus        88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~  158 (457)
T TIGR01622        88 DDRTVFVLQLALKARERDLYEFFSKVGKVRD--------VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGR  158 (457)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCe
Confidence            6789999999999999999999999999998        9999999999999999999999999999997 899999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|..+....                                                   +.   ..           
T Consensus       159 ~i~v~~~~~~~---------------------------------------------------~~---~~-----------  173 (457)
T TIGR01622       159 PIIVQSSQAEK---------------------------------------------------NR---AA-----------  173 (457)
T ss_pred             eeEEeecchhh---------------------------------------------------hh---hh-----------
Confidence            99995432000                                                   00   00           


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                                              .              .+ ....+                                 
T Consensus       174 ------------------------~--------------~~-~~~~~---------------------------------  181 (457)
T TIGR01622       174 ------------------------K--------------AA-THQPG---------------------------------  181 (457)
T ss_pred             ------------------------h--------------cc-cccCC---------------------------------
Confidence                                    0              00 00000                                 


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                                .....++|||+|||.++|+++|+++|+.||.|.     
T Consensus       182 ------------------------------------------~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~-----  214 (457)
T TIGR01622       182 ------------------------------------------DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE-----  214 (457)
T ss_pred             ------------------------------------------CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE-----
Confidence                                                      001257899999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCC-----------CC-ch
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPK-----------LK-PK  601 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~-----------~~-~~  601 (773)
                         .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|++|.|.+|............           .. ..
T Consensus       215 ---~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (457)
T TIGR01622       215 ---DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNT  291 (457)
T ss_pred             ---EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCc
Confidence               7999999998999999999999999999999999999999999999998732211100000           00 00


Q ss_pred             hhhHHHHHHHHHHh-----------------hhcc-------------------CCCCcc-c-cCCCCCCCcEEEEecCC
Q psy2160         602 KKRKKDLEKLKKAQ-----------------EKLF-------------------DWRPDK-M-RGERSKNESVIIVKNLF  643 (773)
Q Consensus       602 ~~k~~~~~~~~~~~-----------------~~~~-------------------~~~~~~-~-~~~~~~~~~~l~ikNl~  643 (773)
                      .........+....                 ..+.                   .+.... . ......++++|+|+||+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~  371 (457)
T TIGR01622       292 EEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMF  371 (457)
T ss_pred             cchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCC
Confidence            00111111110000                 0000                   000000 0 00023567999999999


Q ss_pred             CccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         644 DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       644 ~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      .+.+ ..++.++.+|++||+++|++||.|..|.|....+.|+|||+|.++++|.+|+..|||++|+||.|.|.|+...
T Consensus       372 ~~~~-~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~  448 (457)
T TIGR01622       372 DPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND  448 (457)
T ss_pred             CCcc-cccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence            8864 5678899999999999999999999999988888999999999999999999999999999999999997753

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0123|consensus

Probab=100.00  E-value=3.9e-36  Score=326.79  Aligned_cols=339  Identities=25%  Similarity=0.397  Sum_probs=275.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ..|||+   +++|+..|.++|+++|.|.+        |++++|. |  +-|||||.|.++++|.+||..||...+.|++|
T Consensus         2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s--------~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~   67 (369)
T KOG0123|consen    2 ASLYVG---PDVTEAMLFDKFSPAGPVLS--------IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPI   67 (369)
T ss_pred             CceecC---CcCChHHHHHHhcccCCcee--------EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence            478999   89999999999999999999        9999999 6  99999999999999999999999999999999


Q ss_pred             EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160         296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ  375 (773)
Q Consensus       296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e  375 (773)
                      +|-++      . .||+                                      .|+|+|| ++ .++.         .
T Consensus        68 rim~s------~-rd~~--------------------------------------~~~i~nl-~~-~~~~---------~   91 (369)
T KOG0123|consen   68 RIMWS------Q-RDPS--------------------------------------LVFIKNL-DE-SIDN---------K   91 (369)
T ss_pred             Eeehh------c-cCCc--------------------------------------eeeecCC-Cc-ccCc---------H
Confidence            99443      3 2222                                      2999999 33 3332         7


Q ss_pred             HHHHHhhccCCEEEEEeeC--CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         376 DLREECSKCGHVKKVVLHD--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       376 dL~e~f~k~G~V~~V~i~d--~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                      +|.+.|+.||.|.+|.+..  +.+.|+ ||+|.+.++|.+|+..|||..+.|++|.+.....+..         ...   
T Consensus        92 ~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e---------r~~---  158 (369)
T KOG0123|consen   92 SLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE---------REA---  158 (369)
T ss_pred             HHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh---------hcc---
Confidence            8999999999999998763  347899 9999999999999999999999999999987543210         000   


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                               |.           .  ......+.+||.|++.+++.+.|..+|+.+|.|.     
T Consensus       159 -------------------------~~-----------~--~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~-----  195 (369)
T KOG0123|consen  159 -------------------------PL-----------G--EYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT-----  195 (369)
T ss_pred             -------------------------cc-----------c--chhhhhhhhheeccccccchHHHHHhhcccCcce-----
Confidence                                     00           0  0112468899999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHH
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK  613 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~  613 (773)
                         ++.++.+.. |.++|||||.|.++++|..|+..||+..+.|..+.|..+...             .++...   +.+
T Consensus       196 ---s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk-------------~e~~~~---l~~  255 (369)
T KOG0123|consen  196 ---SVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK-------------SEREAE---LKR  255 (369)
T ss_pred             ---EEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc-------------hhhHHH---Hhh
Confidence               899999987 779999999999999999999999999999999999998831             111111   111


Q ss_pred             HhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEec---CCCCCcEEEEEe
Q psy2160         614 AQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVAQIFF  690 (773)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~---~~~~~G~afV~F  690 (773)
                      .+.....      .........+|+|+|+...  +..         +.|++.|+.||.|+++.|.   .+.+.|++||+|
T Consensus       256 ~~~~~~~------~~~~~~~~~nl~vknld~~--~~~---------e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~f  318 (369)
T KOG0123|consen  256 KFEQEFA------KRSVSLQGANLYVKNLDET--LSD---------EKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEF  318 (369)
T ss_pred             hhHhhhh------hccccccccccccccCccc--cch---------hHHHHHHhcccceeeEEEEeccCCCccceEEEEc
Confidence            1111100      0111234578999998554  333         8999999999999998664   378899999999


Q ss_pred             cCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         691 KEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       691 ~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                      .++++|.+|+..|||+.++|+.|.|..
T Consensus       319 s~~eeA~~A~~~~n~~~i~~k~l~vav  345 (369)
T KOG0123|consen  319 SSPEEAKKAMTEMNGRLIGGKPLYVAV  345 (369)
T ss_pred             CCHHHHHHHHHhhChhhhcCCchhhhH
Confidence            999999999999999999999998865

>KOG0127|consensus

Probab=100.00  E-value=1.4e-35  Score=316.04  Aligned_cols=428  Identities=24%  Similarity=0.311  Sum_probs=276.0

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      ..||||++||++++.++|.++||.+|+|..        +.++.++.++.++|||||+|...++++.|+..++++.|.|+.
T Consensus         5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~--------~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~   76 (678)
T KOG0127|consen    5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKH--------AVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRI   76 (678)
T ss_pred             CceEEEecCCCccchhHHHHhhhcccCcce--------eEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccccee
Confidence            389999999999999999999999999998        899999988899999999999999999999999999999999


Q ss_pred             EEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccC-CCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         295 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW-RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       295 I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~-~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      |.|.+|..........+..+.             ..++.... ++.....  ......|+|+||  |.....        
T Consensus        77 l~v~~A~~R~r~e~~~~~e~~-------------~veK~~~q~~~~k~~v--~~~k~rLIIRNL--Pf~~k~--------  131 (678)
T KOG0127|consen   77 LNVDPAKKRARSEEVEKGENK-------------AVEKPIEQKRPTKAKV--DLPKWRLIIRNL--PFKCKK--------  131 (678)
T ss_pred             cccccccccccchhcccccch-------------hhhcccccCCcchhhc--cCccceEEeecC--CcccCc--------
Confidence            999988743322211111100             00000000 0000000  011345999999  555443        


Q ss_pred             HHHHHHHhhccCCEEEEEeeCC---CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDK---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREA  450 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~---~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~  450 (773)
                       .+|..+|+.||.|..|.|+.+   .-.|+|||+|....+|..|+..|||..|.||+|-|.|+..+..|.-....+  .+
T Consensus       132 -~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~--~~  208 (678)
T KOG0127|consen  132 -PDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEE--KQ  208 (678)
T ss_pred             -HHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhh--hh
Confidence             789999999999999999853   345999999999999999999999999999999999998887765422111  11


Q ss_pred             HHHHHHHHhhh-------------hhhhhhh-----------hccc------CCCCCC----CCCCchHHhhhhHhhhhc
Q psy2160         451 RLKKWETFLGK-------------KIKVERA-----------KFTM------KGEAYD----PKLKPKKKRKKDLEKLKK  496 (773)
Q Consensus       451 r~~~~~~~l~~-------------~~~~~~~-----------~~~~------~G~~~~----p~~~~~~~r~~~~~~~~~  496 (773)
                      .+..-....+.             +.....+           .+..      .+...+    +.-.+..+......-...
T Consensus       209 s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en  288 (678)
T KOG0127|consen  209 SLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTREN  288 (678)
T ss_pred             hhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhcccccccc
Confidence            11111000000             0000000           0000      000000    000000000000000112


Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-----C
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-----D  571 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-----n  571 (773)
                      .....+|||+|||+++|+++|.++|++||.|.        .+.|+.++.||+++|.|||.|.+...|+.||...     .
T Consensus       289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~--------ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~  360 (678)
T KOG0127|consen  289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK--------YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASED  360 (678)
T ss_pred             ccccceEEEecCCccccHHHHHHHHHhhccce--------eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCC
Confidence            33458999999999999999999999999999        5889999999999999999999999999999877     3


Q ss_pred             C-ceecCeEEEEEEccccccCCcCC-----------------------------CCCCc--hhhhHHHHHHHHHHhhhcc
Q psy2160         572 G-YEIRGKKIKVERAKFTMKGEAYD-----------------------------PKLKP--KKKRKKDLEKLKKAQEKLF  619 (773)
Q Consensus       572 g-~~i~g~~i~V~~a~~~~~~~~~~-----------------------------~~~~~--~~~k~~~~~~~~~~~~~~~  619 (773)
                      | ..|.||.|.|.+|.-......+.                             ..+..  ...|.. ++   ....+++
T Consensus       361 g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer-~~---~~k~k~l  436 (678)
T KOG0127|consen  361 GSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRER-IA---ERKRKKL  436 (678)
T ss_pred             ceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHH-HH---HHHHHhh
Confidence            4 67889999999986321100000                             00000  001110 11   0001111


Q ss_pred             CCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCC-ceeEE---Ee-----cCCCCCcEEEEEe
Q psy2160         620 DWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG-HVKKV---VL-----HDKHPEGVAQIFF  690 (773)
Q Consensus       620 ~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG-~V~~v---~i-----~~~~~~G~afV~F  690 (773)
                       -+     +....+.+.|+|+|||..  ++  |.-   |..-+++....|- .|.++   .+     ..+.+.|++||.|
T Consensus       437 -kn-----pnlhlSrtRL~i~Nlpra--mn--~Kq---L~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f  503 (678)
T KOG0127|consen  437 -KN-----PNLHLSRTRLVIRNLPRA--MN--PKQ---LNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGF  503 (678)
T ss_pred             -cC-----CceeeehhhhhhhcCccc--cC--HHH---HHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCc
Confidence             01     111223578999999765  43  222   2233444444332 33322   11     1367789999999


Q ss_pred             cCHHHHHHHHHHh
Q psy2160         691 KEPEAADACRELL  703 (773)
Q Consensus       691 ~~~e~A~~Ai~~l  703 (773)
                      ..++.|.+|+..+
T Consensus       504 ~EhEhalkalk~~  516 (678)
T KOG0127|consen  504 TEHEHALKALKVL  516 (678)
T ss_pred             cHHHHHHHhhhcc
Confidence            9999999999887

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=100.00  E-value=1.3e-34  Score=334.94  Aligned_cols=199  Identities=24%  Similarity=0.342  Sum_probs=158.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||..+|+++|+++|+.||.|.        .|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+
T Consensus       294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~  365 (509)
T TIGR01642       294 SKDRIYIGNLPLYLGEDQIKELLESFGDLK--------AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN  365 (509)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            457999999999999999999999999999        799999998999999999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCC--CchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKL--KPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  656 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~  656 (773)
                      .|.|.+|.............  .+....   ...+.           .........++++|+|.||+++.++.+|. .+.
T Consensus       366 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~s~v~~l~N~~~~~~l~~d~-~~~  430 (509)
T TIGR01642       366 KLHVQRACVGANQATIDTSNGMAPVTLL---AKALS-----------QSILQIGGKPTKVVQLTNLVTGDDLMDDE-EYE  430 (509)
T ss_pred             EEEEEECccCCCCCCccccccccccccc---cccch-----------hhhccccCCCceEEEeccCCchhHhcCcc-hHH
Confidence            99999997543321110000  000000   00000           00001123457899999999887766543 568


Q ss_pred             HHHHHHHHHHhcCCceeEEEecCC-------CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  720 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~~-------~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg  720 (773)
                      +|.++|+++|++||.|.+|.|+..       ...|+|||+|.+.++|.+|+..|||+.|+||.|.|.||+.
T Consensus       431 ~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~  501 (509)
T TIGR01642       431 EIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE  501 (509)
T ss_pred             HHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence            999999999999999999998753       2358999999999999999999999999999999999885

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=100.00  E-value=9e-34  Score=312.48  Aligned_cols=286  Identities=21%  Similarity=0.275  Sum_probs=212.9

Q ss_pred             CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160         349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFG  424 (773)
Q Consensus       349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~  424 (773)
                      ..+|||+||  |..+.+         ++|+++|+.||+|..|.|..    +.++|||||+|.+.++|.+|+..|||..+.
T Consensus         3 ~~~l~V~nL--p~~~~e---------~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~   71 (352)
T TIGR01661         3 KTNLIVNYL--PQTMTQ---------EEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ   71 (352)
T ss_pred             CcEEEEeCC--CCCCCH---------HHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC
Confidence            468999999  444443         89999999999999998752    457899999999999999999999999999


Q ss_pred             CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEE
Q psy2160         425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVY  504 (773)
Q Consensus       425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~  504 (773)
                      |+.|.|.+..+..                                                          .....++||
T Consensus        72 g~~i~v~~a~~~~----------------------------------------------------------~~~~~~~l~   93 (352)
T TIGR01661        72 NKTIKVSYARPSS----------------------------------------------------------DSIKGANLY   93 (352)
T ss_pred             CeeEEEEeecccc----------------------------------------------------------cccccceEE
Confidence            9999998643211                                                          012356899


Q ss_pred             EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC--eEEEE
Q psy2160         505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKV  582 (773)
Q Consensus       505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g--~~i~V  582 (773)
                      |+|||.++++++|+.+|+.||.|.        .++++.+..+|.++|||||+|.+.++|..||+.|||..+.|  .+|.|
T Consensus        94 v~~l~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v  165 (352)
T TIGR01661        94 VSGLPKTMTQHELESIFSPFGQII--------TSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV  165 (352)
T ss_pred             ECCccccCCHHHHHHHHhccCCEE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence            999999999999999999999998        79999998788999999999999999999999999999987  67899


Q ss_pred             EEccccccCCc--CCC----CCCchh--------------------------hhHHHHHHHHHHhhh---ccCC-----C
Q psy2160         583 ERAKFTMKGEA--YDP----KLKPKK--------------------------KRKKDLEKLKKAQEK---LFDW-----R  622 (773)
Q Consensus       583 ~~a~~~~~~~~--~~~----~~~~~~--------------------------~k~~~~~~~~~~~~~---~~~~-----~  622 (773)
                      .++........  ..+    ...+..                          ............+..   ...+     .
T Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (352)
T TIGR01661       166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS  245 (352)
T ss_pred             EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence            98864321100  000    000000                          000000000000000   0000     0


Q ss_pred             C---ccc-----c----CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEE
Q psy2160         623 P---DKM-----R----GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVA  686 (773)
Q Consensus       623 ~---~~~-----~----~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~a  686 (773)
                      +   ...     .    ......+.+|+|+||+..  ++         +++|+++|++||.|.+|.|..    +.++|+|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~--~~---------e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~a  314 (352)
T TIGR01661       246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD--TD---------ETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYG  314 (352)
T ss_pred             CccccccccccccCCCCCCCCCCCcEEEEeCCCCC--CC---------HHHHHHHHHhCCCeEEEEEeEcCCCCCccceE
Confidence            0   000     0    000123458999999765  33         389999999999999998763    5689999


Q ss_pred             EEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         687 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       687 fV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                      ||.|.+.++|.+||..|||..|+||+|.|.|...++
T Consensus       315 FV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~  350 (352)
T TIGR01661       315 FVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA  350 (352)
T ss_pred             EEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence            999999999999999999999999999999966543

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0117|consensus

Probab=100.00  E-value=1.1e-33  Score=296.20  Aligned_cols=253  Identities=26%  Similarity=0.393  Sum_probs=214.1

Q ss_pred             CCCCCCCccCCC-CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHH
Q psy2160         202 KPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDL  280 (773)
Q Consensus       202 ~~~~~~~~~~~~-~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~  280 (773)
                      ...+|.|....| ..|.|||+.||.|+.|++|.-||.+.|.|-+        ++|++|+.+|.++|||||+|.+.+.|+.
T Consensus        69 ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e--------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~  140 (506)
T KOG0117|consen   69 GGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE--------LRLMMDPFSGDNRGYAFVTFCTKEEAQE  140 (506)
T ss_pred             CCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee--------EEEeecccCCCCcceEEEEeecHHHHHH
Confidence            344566877766 9999999999999999999999999999999        9999999889999999999999999999


Q ss_pred             HHHHcCCceec-CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCC
Q psy2160         281 ALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFD  359 (773)
Q Consensus       281 Al~~lng~~l~-g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~  359 (773)
                      ||+.||+++|+ |+.|.|..+.                                              ..+.|||.|++.
T Consensus       141 Aik~lnn~Eir~GK~igvc~Sv----------------------------------------------an~RLFiG~IPK  174 (506)
T KOG0117|consen  141 AIKELNNYEIRPGKLLGVCVSV----------------------------------------------ANCRLFIGNIPK  174 (506)
T ss_pred             HHHHhhCccccCCCEeEEEEee----------------------------------------------ecceeEeccCCc
Confidence            99999999995 8999997643                                              245699999954


Q ss_pred             ccccchhhHHHHHHHHHHHHHhhccCC-EEEEEeeC-----CCCCeEEEEEecCHHHHHHHHHHh-CCc-ccCCeeEEEE
Q psy2160         360 PALFDKDVTLILEYQQDLREECSKCGH-VKKVVLHD-----KHPEGVAQIFFKEPEAADACRELL-NGR-WFGQRQITAE  431 (773)
Q Consensus       360 p~~~~~d~~~~~ei~edL~e~f~k~G~-V~~V~i~d-----~~~~G~afV~F~~~e~A~~Ai~~l-ng~-~~~Gr~I~v~  431 (773)
                      ...           +++|.+++++.++ |..|.++.     ...+|||||.|.+...|..|.+.| +|+ .+.|..+.|.
T Consensus       175 ~k~-----------keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd  243 (506)
T KOG0117|consen  175 TKK-----------KEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD  243 (506)
T ss_pred             ccc-----------HHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence            333           4889999999875 66777763     247999999999999999987766 444 3679999999


Q ss_pred             ecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCC
Q psy2160         432 TWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD  511 (773)
Q Consensus       432 ~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~  511 (773)
                      |+++....     +++.                                                -..-..|||+||+.+
T Consensus       244 WAep~~e~-----ded~------------------------------------------------ms~VKvLYVRNL~~~  270 (506)
T KOG0117|consen  244 WAEPEEEP-----DEDT------------------------------------------------MSKVKVLYVRNLMES  270 (506)
T ss_pred             ccCcccCC-----Chhh------------------------------------------------hhheeeeeeeccchh
Confidence            98765410     0000                                                012468999999999


Q ss_pred             CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160         512 LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT  588 (773)
Q Consensus       512 ~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~  588 (773)
                      +|+|.|.++|++||.|.        +|+.++|        ||||.|.+.++|.+|++.+||++|.|..|.|.+|+..
T Consensus       271 tTeE~lk~~F~~~G~ve--------RVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~  331 (506)
T KOG0117|consen  271 TTEETLKKLFNEFGKVE--------RVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV  331 (506)
T ss_pred             hhHHHHHHHHHhccceE--------Eeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence            99999999999999999        7777744        9999999999999999999999999999999999954

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=100.00  E-value=1.1e-32  Score=322.17  Aligned_cols=269  Identities=23%  Similarity=0.336  Sum_probs=217.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++++++|+++|++||.|..        |+|..+.. |+++|||||.|.+.++|..||+.|||..+.|+
T Consensus        87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~--------~~i~~~~~-g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~  157 (562)
T TIGR01628        87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILS--------CKVATDEN-GKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK  157 (562)
T ss_pred             CCCceEEcCCCccCCHHHHHHHHHhcCCcce--------eEeeecCC-CCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence            4578999999999999999999999999998        99999986 99999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|.|......  .. ..                                .......++|+|+||+  ..+++        
T Consensus       158 ~i~v~~~~~~--~~-~~--------------------------------~~~~~~~~~l~V~nl~--~~~te--------  192 (562)
T TIGR01628       158 EVYVGRFIKK--HE-RE--------------------------------AAPLKKFTNLYVKNLD--PSVNE--------  192 (562)
T ss_pred             eEEEeccccc--cc-cc--------------------------------cccccCCCeEEEeCCC--CcCCH--------
Confidence            9999654311  00 00                                0012234679999993  34333        


Q ss_pred             HHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccC----CeeEEEEecCCCcccccchhHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG----QRQITAETWDGKTRYKIQETAE  446 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~----Gr~I~v~~~~~~~~~~~~~~~~  446 (773)
                       ++|+++|+.||.|.++.+..   +.++|+|||.|.+.++|.+|+..|||..+.    |+.+.+.....+..        
T Consensus       193 -e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e--------  263 (562)
T TIGR01628       193 -DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE--------  263 (562)
T ss_pred             -HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh--------
Confidence             88999999999999997763   457899999999999999999999999999    99999876533210        


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCc
Q psy2160         447 EREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGL  526 (773)
Q Consensus       447 e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~  526 (773)
                       ....+   .......                            ..........++|||+|||.++|+++|+++|+.||.
T Consensus       264 -r~~~~---~~~~~~~----------------------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~  311 (562)
T TIGR01628       264 -REAEL---RRKFEEL----------------------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE  311 (562)
T ss_pred             -hHHHH---HhhHHhh----------------------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence             00000   0000000                            000011235678999999999999999999999999


Q ss_pred             ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160         527 VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       527 I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~  586 (773)
                      |.        +|+|+.|. +|.++|||||+|.+.++|.+|+..|||..|.|++|.|.+|.
T Consensus       312 i~--------~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~  362 (562)
T TIGR01628       312 IT--------SAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ  362 (562)
T ss_pred             eE--------EEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence            99        79999994 59999999999999999999999999999999999999998

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=100.00  E-value=8.4e-33  Score=313.40  Aligned_cols=250  Identities=25%  Similarity=0.375  Sum_probs=205.3

Q ss_pred             CCCCCccCCC-CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHH
Q psy2160         204 EPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL  282 (773)
Q Consensus       204 ~~~~~~~~~~-~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al  282 (773)
                      .++.|....| ..|+|||+|||.++++++|+++|++||.|..        |+|++| .+|+++|||||+|.+.++|+.||
T Consensus        46 Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~--------vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai  116 (578)
T TIGR01648        46 PPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYE--------LRLMMD-FSGQNRGYAFVTFCGKEEAKEAV  116 (578)
T ss_pred             CCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEE--------EEEEEC-CCCCccceEEEEeCCHHHHHHHH
Confidence            4567876666 8899999999999999999999999999998        999999 55999999999999999999999


Q ss_pred             HHcCCceec-CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCcc
Q psy2160         283 SILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPA  361 (773)
Q Consensus       283 ~~lng~~l~-g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~  361 (773)
                      +.||+..|. |+.|.|..+.                                              ..++|||+||+  .
T Consensus       117 ~~lng~~i~~Gr~l~V~~S~----------------------------------------------~~~rLFVgNLP--~  148 (578)
T TIGR01648       117 KLLNNYEIRPGRLLGVCISV----------------------------------------------DNCRLFVGGIP--K  148 (578)
T ss_pred             HHcCCCeecCCccccccccc----------------------------------------------cCceeEeecCC--c
Confidence            999999986 6777774321                                              24679999994  3


Q ss_pred             ccchhhHHHHHHHHHHHHHhhccCC-EEEEEeeC-----CCCCeEEEEEecCHHHHHHHHHHhCC--cccCCeeEEEEec
Q psy2160         362 LFDKDVTLILEYQQDLREECSKCGH-VKKVVLHD-----KHPEGVAQIFFKEPEAADACRELLNG--RWFGQRQITAETW  433 (773)
Q Consensus       362 ~~~~d~~~~~ei~edL~e~f~k~G~-V~~V~i~d-----~~~~G~afV~F~~~e~A~~Ai~~lng--~~~~Gr~I~v~~~  433 (773)
                      ...         +++|.++|++++. +..+.++.     ..++|+|||.|.+.++|..|+..|+.  ..+.|+.|.|.+.
T Consensus       149 ~~T---------eeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA  219 (578)
T TIGR01648       149 NKK---------REEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWA  219 (578)
T ss_pred             chh---------hHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEee
Confidence            333         3789999999863 55555542     24689999999999999999988753  3478999999875


Q ss_pred             CCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCC
Q psy2160         434 DGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLT  513 (773)
Q Consensus       434 ~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t  513 (773)
                      ......     +                                 +               ......++|||+|||.++|
T Consensus       220 ~p~~~~-----d---------------------------------~---------------~~~~~~k~LfVgNL~~~~t  246 (578)
T TIGR01648       220 EPEEEV-----D---------------------------------E---------------DVMAKVKILYVRNLMTTTT  246 (578)
T ss_pred             cccccc-----c---------------------------------c---------------cccccccEEEEeCCCCCCC
Confidence            432200     0                                 0               0012347899999999999


Q ss_pred             HHHHHHHHHhc--CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160         514 QEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT  588 (773)
Q Consensus       514 ~e~L~~~F~~~--G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~  588 (773)
                      +++|+++|+.|  |.|.        +|+++        ++||||+|.+.++|.+|+..|||..|.|+.|+|.+|+..
T Consensus       247 ee~L~~~F~~f~~G~I~--------rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~  307 (578)
T TIGR01648       247 EEIIEKSFSEFKPGKVE--------RVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV  307 (578)
T ss_pred             HHHHHHHHHhcCCCceE--------EEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            99999999999  9998        67765        569999999999999999999999999999999999753

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0124|consensus

Probab=100.00  E-value=7.9e-33  Score=281.65  Aligned_cols=306  Identities=26%  Similarity=0.479  Sum_probs=231.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      -.|+|||+.+.+.+.|+.|+..|..||+|.+        |.|..|+-||+.||||||+|.-+|.|++|++.|||..++||
T Consensus       112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKS--------InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR  183 (544)
T KOG0124|consen  112 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR  183 (544)
T ss_pred             HhHheeeeeeEEEechHHHHhhccCCCCcce--------eecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence            5699999999999999999999999999999        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|+|.+..                                                      ||+.              
T Consensus       184 NiKVgrPs------------------------------------------------------NmpQ--------------  195 (544)
T KOG0124|consen  184 NIKVGRPS------------------------------------------------------NMPQ--------------  195 (544)
T ss_pred             cccccCCC------------------------------------------------------CCcc--------------
Confidence            99993211                                                      3311              


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                                                           |+-.|..+.                                  
T Consensus       196 -------------------------------------AQpiID~vq----------------------------------  204 (544)
T KOG0124|consen  196 -------------------------------------AQPIIDMVQ----------------------------------  204 (544)
T ss_pred             -------------------------------------cchHHHHHH----------------------------------
Confidence                                                 111111110                                  


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                               ......++|||..+.++.++++|+.+|+.||.|.     
T Consensus       205 -----------------------------------------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~-----  238 (544)
T KOG0124|consen  205 -----------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-----  238 (544)
T ss_pred             -----------------------------------------HHHHhhheEEeeecCCCccHHHHHHHHHhhccee-----
Confidence                                                     0011356899999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccccc-----------------------
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMK-----------------------  590 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~-----------------------  590 (773)
                         .|+|.+++.++.++|||||+|.+..+-..||..||-+.++|..|+|..+.-...                       
T Consensus       239 ---~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaT  315 (544)
T KOG0124|consen  239 ---KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAAT  315 (544)
T ss_pred             ---eEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHH
Confidence               899999999889999999999999999999999999999999999997542100                       


Q ss_pred             ----------CCc-------------------------------C-------------------------CCCC--Cc--
Q psy2160         591 ----------GEA-------------------------------Y-------------------------DPKL--KP--  600 (773)
Q Consensus       591 ----------~~~-------------------------------~-------------------------~~~~--~~--  600 (773)
                                ++.                               .                         +|.+  .+  
T Consensus       316 AKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~  395 (544)
T KOG0124|consen  316 AKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTL  395 (544)
T ss_pred             HHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCch
Confidence                      000                               0                         0000  00  


Q ss_pred             ---hhhhHHHHHHHHHHh---hhccCCCCccccC-----------CCCCCCcEEEEecCCCccccccchhhHHHHHHHHH
Q psy2160         601 ---KKKRKKDLEKLKKAQ---EKLFDWRPDKMRG-----------ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR  663 (773)
Q Consensus       601 ---~~~k~~~~~~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~  663 (773)
                         .+++.+..+++....   +.+.........+           .+...+++++|+||.+|.++++      +|+.+|+
T Consensus       396 g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe------~LegEi~  469 (544)
T KOG0124|consen  396 GLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDE------DLEGEIT  469 (544)
T ss_pred             hhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhh------HHHHHHH
Confidence               001111111111000   0000000001111           1224589999999999988875      4679999


Q ss_pred             HHHhcCCceeEEEecCCCCCc--------EEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         664 EECSKCGHVKKVVLHDKHPEG--------VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       664 ~~f~~fG~V~~v~i~~~~~~G--------~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      ++|++||.|..|.|+.....+        -.||+|....++.+|+.+|+||||+||+|.++.||..
T Consensus       470 EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~  535 (544)
T KOG0124|consen  470 EECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQE  535 (544)
T ss_pred             HHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhh
Confidence            999999999999998744333        3899999999999999999999999999999999863

>KOG0145|consensus

Probab=100.00  E-value=2.2e-32  Score=267.54  Aligned_cols=303  Identities=21%  Similarity=0.278  Sum_probs=224.0

Q ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      +...|.|.|.-||..+|++||+.+|+..|.|.+        ++|++|+-||.+-||+||.|.++++|++||..|||..+.
T Consensus        38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiES--------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ  109 (360)
T KOG0145|consen   38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ  109 (360)
T ss_pred             CcccceeeeeecccccCHHHHHHHhhcccceee--------eeeeeccccccccccceeeecChHHHHHHHhhhcceeec
Confidence            347799999999999999999999999999999        999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHH
Q psy2160         292 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  371 (773)
Q Consensus       292 g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~  371 (773)
                      .++|+|.+|+++..                                        +..+..++|.+|  |..+.       
T Consensus       110 ~KTIKVSyARPSs~----------------------------------------~Ik~aNLYvSGl--PktMt-------  140 (360)
T KOG0145|consen  110 NKTIKVSYARPSSD----------------------------------------SIKDANLYVSGL--PKTMT-------  140 (360)
T ss_pred             cceEEEEeccCChh----------------------------------------hhcccceEEecC--Cccch-------
Confidence            99999999874311                                        123557999999  44443       


Q ss_pred             HHHHHHHHHhhccCCEEEEEe-eC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCcccccchhH
Q psy2160         372 EYQQDLREECSKCGHVKKVVL-HD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKTRYKIQETA  445 (773)
Q Consensus       372 ei~edL~e~f~k~G~V~~V~i-~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~~~~~~~~~  445 (773)
                        +.+|..+|+.||.|..-+| .|   +-++|++||+|....+|..||..|||..-.|  .+|.|.+......-......
T Consensus       141 --qkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~l  218 (360)
T KOG0145|consen  141 --QKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALL  218 (360)
T ss_pred             --HHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhh
Confidence              4889999999999874433 22   4589999999999999999999999988765  67888765433211100000


Q ss_pred             HH----HHHHHHHHHHHhhhhhhhhhh--hc---ccCC-CCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHH
Q psy2160         446 EE----REARLKKWETFLGKKIKVERA--KF---TMKG-EAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQE  515 (773)
Q Consensus       446 ~e----~~~r~~~~~~~l~~~~~~~~~--~~---~~~G-~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e  515 (773)
                      ..    ...|...   -+..  ..++.  ..   ...+ ..++|........-....-........+|||.||.++..+.
T Consensus       219 s~ly~sp~rr~~G---p~hh--~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~  293 (360)
T KOG0145|consen  219 SQLYQSPARRYGG---PMHH--QAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADES  293 (360)
T ss_pred             HHhhcCccccCCC---cccc--hhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHh
Confidence            00    0000000   0000  00000  00   0000 00111110000000000011223456899999999999999


Q ss_pred             HHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160         516 EFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       516 ~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~  586 (773)
                      -|.++|.+||.|.        +|+|++|..|.+++|||||++.+.++|..||..|||..++++.|.|.+-.
T Consensus       294 ~LWQlFgpFGAv~--------nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt  356 (360)
T KOG0145|consen  294 ILWQLFGPFGAVT--------NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT  356 (360)
T ss_pred             HHHHHhCccccee--------eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence            9999999999999        89999999999999999999999999999999999999999999999754

>KOG0147|consensus

Probab=100.00  E-value=2.8e-32  Score=293.66  Aligned_cols=309  Identities=24%  Similarity=0.382  Sum_probs=235.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+||+-.|+..++..+|.+||+.+|.|..        |+|+.|..+++++|.|||+|.+.+++.+||. |.|..+.|.
T Consensus       178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrd--------VriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~  248 (549)
T KOG0147|consen  178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRD--------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGV  248 (549)
T ss_pred             hHHHHHHHHHhhcCCchhHHHHHHhhcCcce--------eEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCc
Confidence            7789999999999999999999999999998        9999999999999999999999999999996 999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|+....                                                             +         
T Consensus       249 pv~vq~sEa-------------------------------------------------------------e---------  258 (549)
T KOG0147|consen  249 PVIVQLSEA-------------------------------------------------------------E---------  258 (549)
T ss_pred             eeEecccHH-------------------------------------------------------------H---------
Confidence            999944220                                                             0         


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                                                            ... ...++-.+.|.-..                        
T Consensus       259 --------------------------------------knr-~a~~s~a~~~k~~~------------------------  275 (549)
T KOG0147|consen  259 --------------------------------------KNR-AANASPALQGKGFT------------------------  275 (549)
T ss_pred             --------------------------------------HHH-HHhccccccccccc------------------------
Confidence                                                  000 00011111110000                        


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                                  .+...|||+||.+++|++.|+.+|+.||.|.     
T Consensus       276 --------------------------------------------~p~~rl~vgnLHfNite~~lr~ifepfg~Ie-----  306 (549)
T KOG0147|consen  276 --------------------------------------------GPMRRLYVGNLHFNITEDMLRGIFEPFGKIE-----  306 (549)
T ss_pred             --------------------------------------------cchhhhhhcccccCchHHHHhhhccCcccce-----
Confidence                                                        0122399999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCc-------CC----CCCCc-h
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA-------YD----PKLKP-K  601 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~-------~~----~~~~~-~  601 (773)
                         .|.+.+|..||+++|||||+|.+.++|..|+..|||..|.|+.|+|...........       .+    ..+.. .
T Consensus       307 ---~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~  383 (549)
T KOG0147|consen  307 ---NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGS  383 (549)
T ss_pred             ---eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccccc
Confidence               899999998999999999999999999999999999999999999987654322111       11    00000 1


Q ss_pred             hhhHHHHHHHHHHhh---------hc------------------cCCCCccccCCCCCCCcEEEEecCCCccccccchhh
Q psy2160         602 KKRKKDLEKLKKAQE---------KL------------------FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTL  654 (773)
Q Consensus       602 ~~k~~~~~~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~  654 (773)
                      ..+.+.+.++.....         .+                  ....+....+.-..++.|+.|+|||+|.+ ++.|+|
T Consensus       384 ~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpst-ete~n~  462 (549)
T KOG0147|consen  384 GGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPST-ETEPNW  462 (549)
T ss_pred             ccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCccc-ccCcch
Confidence            112222333221100         00                  00001101111125688999999999976 456999


Q ss_pred             HHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q psy2160         655 ILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW  718 (773)
Q Consensus       655 ~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~  718 (773)
                      -.+|++||.++|++||.|..|.|..+. .|++||+|.+.++|..|+.+|||+||+||.|.+.|.
T Consensus       463 d~eI~edV~Eec~k~g~v~hi~vd~ns-~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~  525 (549)
T KOG0147|consen  463 DQEIREDVIEECGKHGKVCHIFVDKNS-AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL  525 (549)
T ss_pred             hhHHHHHHHHHHHhcCCeeEEEEccCC-CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence            999999999999999999999886654 499999999999999999999999999999999984

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.97  E-value=7.3e-30  Score=289.50  Aligned_cols=282  Identities=20%  Similarity=0.256  Sum_probs=215.5

Q ss_pred             ChHHHHHHHHHcCCceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEE
Q psy2160         274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVII  353 (773)
Q Consensus       274 ~~esA~~Al~~lng~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~  353 (773)
                      -.++|.+||..++|+.+........+..         |.                     ..|.     ...+...+.||
T Consensus        18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~---------Pp---------------------~~~~-----~~~p~~~~~lF   62 (578)
T TIGR01648        18 PDEAALKALLERTGYTLVQENGQRKYGG---------PP---------------------PGWS-----GVQPGRGCEVF   62 (578)
T ss_pred             ccHHHHHHHHHhhCccccccCCcccCCC---------CC---------------------Cccc-----CCCCCCCCEEE
Confidence            3678999998889887755444442221         10                     0121     11133467899


Q ss_pred             EecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEee---CCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEE
Q psy2160         354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQIT  429 (773)
Q Consensus       354 l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~---d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~  429 (773)
                      |+||  |..+.+         ++|+++|++||.|..|.|+   .+.++|+|||+|.+.++|.+||..||+..+. |+.|.
T Consensus        63 VgnL--p~~~tE---------d~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~  131 (578)
T TIGR01648        63 VGKI--PRDLYE---------DELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG  131 (578)
T ss_pred             eCCC--CCCCCH---------HHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence            9999  444443         8999999999999999775   2568999999999999999999999998875 66665


Q ss_pred             EEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCC
Q psy2160         430 AETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLP  509 (773)
Q Consensus       430 v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp  509 (773)
                      +..                                                                ...+++|||+|||
T Consensus       132 V~~----------------------------------------------------------------S~~~~rLFVgNLP  147 (578)
T TIGR01648       132 VCI----------------------------------------------------------------SVDNCRLFVGGIP  147 (578)
T ss_pred             ccc----------------------------------------------------------------cccCceeEeecCC
Confidence            532                                                                1235799999999


Q ss_pred             CCCCHHHHHHHHHhcCcceeccCCCceEEEEE-ecCCCCCCcceEEEEeCChHHHHHHHHHhCC--ceecCeEEEEEEcc
Q psy2160         510 LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKESVDLALSILDG--YEIRGKKIKVERAK  586 (773)
Q Consensus       510 ~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~-~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng--~~i~g~~i~V~~a~  586 (773)
                      .++|+++|.+.|++++....       .+.++ .....++++|||||+|.++++|..|++.|+.  ..+.|+.|.|.++.
T Consensus       148 ~~~TeeeL~eeFskv~egvv-------~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~  220 (578)
T TIGR01648       148 KNKKREEILEEFSKVTEGVV-------DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE  220 (578)
T ss_pred             cchhhHHHHHHhhcccCCce-------EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeec
Confidence            99999999999999975321       23333 3334467899999999999999999988864  35789999999987


Q ss_pred             ccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHH
Q psy2160         587 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREEC  666 (773)
Q Consensus       587 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f  666 (773)
                      ......                                   .......++|+|+||+..  +++         ++|+++|
T Consensus       221 p~~~~d-----------------------------------~~~~~~~k~LfVgNL~~~--~te---------e~L~~~F  254 (578)
T TIGR01648       221 PEEEVD-----------------------------------EDVMAKVKILYVRNLMTT--TTE---------EIIEKSF  254 (578)
T ss_pred             cccccc-----------------------------------ccccccccEEEEeCCCCC--CCH---------HHHHHHH
Confidence            321100                                   001123479999999765  443         8999999


Q ss_pred             hcC--CceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         667 SKC--GHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       667 ~~f--G~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                      ++|  |.|.+|.+..    |+|||+|.+.++|.+|+..|||..|+|+.|+|.+..+..
T Consensus       255 ~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~  308 (578)
T TIGR01648       255 SEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD  308 (578)
T ss_pred             HhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence            999  9999997754    799999999999999999999999999999999986654

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0145|consensus

Probab=99.97  E-value=9.5e-30  Score=249.17  Aligned_cols=280  Identities=22%  Similarity=0.300  Sum_probs=212.8

Q ss_pred             cEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160         350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ  425 (773)
Q Consensus       350 ~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G  425 (773)
                      ..++|..|  |..+.         +++++.+|...|+|++|.+..    +.+-||+||.|.++++|.+|+..|||-.+..
T Consensus        42 TNLIvNYL--PQ~MT---------qdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~  110 (360)
T KOG0145|consen   42 TNLIVNYL--PQNMT---------QDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN  110 (360)
T ss_pred             ceeeeeec--ccccC---------HHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc
Confidence            45777777  55554         489999999999999998874    4688999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEE
Q psy2160         426 RQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYV  505 (773)
Q Consensus       426 r~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V  505 (773)
                      +.|.|+++.+..                                                          ......+|||
T Consensus       111 KTIKVSyARPSs----------------------------------------------------------~~Ik~aNLYv  132 (360)
T KOG0145|consen  111 KTIKVSYARPSS----------------------------------------------------------DSIKDANLYV  132 (360)
T ss_pred             ceEEEEeccCCh----------------------------------------------------------hhhcccceEE
Confidence            999999865432                                                          1234678999


Q ss_pred             cCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe--EEEEE
Q psy2160         506 SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK--KIKVE  583 (773)
Q Consensus       506 ~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~--~i~V~  583 (773)
                      ++||..+|..+|.++|++||.|.        .-+|..|..||.++|.|||.|+...+|..||..|||..-.|.  +|.|.
T Consensus       133 SGlPktMtqkelE~iFs~fGrII--------tSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK  204 (360)
T KOG0145|consen  133 SGLPKTMTQKELEQIFSPFGRII--------TSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK  204 (360)
T ss_pred             ecCCccchHHHHHHHHHHhhhhh--------hhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence            99999999999999999999998        578899999999999999999999999999999999987764  89999


Q ss_pred             EccccccCCcCC--------CCCC---c--hhhhHHHHHHHH---HHhhhccCCCCccccC-------CCCCCCcEEEEe
Q psy2160         584 RAKFTMKGEAYD--------PKLK---P--KKKRKKDLEKLK---KAQEKLFDWRPDKMRG-------ERSKNESVIIVK  640 (773)
Q Consensus       584 ~a~~~~~~~~~~--------~~~~---~--~~~k~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~l~ik  640 (773)
                      +|..........        |...   +  .....-.+..+.   ..+.+......+.+.+       .......||+|.
T Consensus       205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY  284 (360)
T KOG0145|consen  205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY  284 (360)
T ss_pred             ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence            987542211110        1000   0  000000000000   0011111111111111       112347899999


Q ss_pred             cCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160         641 NLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE  716 (773)
Q Consensus       641 Nl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~  716 (773)
                      ||....  +         +.-|.++|.+||.|.+|+|.+    +.-+|++||.+.+-++|..||..|||..+++|.|.|+
T Consensus       285 NLspd~--d---------e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs  353 (360)
T KOG0145|consen  285 NLSPDA--D---------ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS  353 (360)
T ss_pred             ecCCCc--h---------HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence            995432  2         278899999999999998865    5678999999999999999999999999999999999


Q ss_pred             E
Q psy2160         717 T  717 (773)
Q Consensus       717 ~  717 (773)
                      |
T Consensus       354 F  354 (360)
T KOG0145|consen  354 F  354 (360)
T ss_pred             E
Confidence            9

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.97  E-value=7.6e-29  Score=283.11  Aligned_cols=319  Identities=19%  Similarity=0.232  Sum_probs=210.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      .-.+|||+||++.+|+++|+++|++||.|.+        |+|+++..    +|+|||+|.+.++|.+|++.|||..|.| 
T Consensus        95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~--------v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~  162 (481)
T TIGR01649        95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLR--------IVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNG  162 (481)
T ss_pred             ceEEEEEcCCCCCCCHHHHHHHHhccCCEEE--------EEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence            4468999999999999999999999999998        99887643    4799999999999999999999999965 


Q ss_pred             -eEEEEEeecccccCC------C--CC-CCCc-hhh--hhHHHHHHHHHHHh--------hhcc--------------CC
Q psy2160         293 -KKIKVERAKFTMKGE------A--YD-PKLK-PKK--KRKKDLEKLKKAQE--------KLFD--------------WR  337 (773)
Q Consensus       293 -~~I~V~~A~~~~k~~------~--~~-p~~~-~~~--~~~k~~~~~~k~~~--------k~~~--------------~~  337 (773)
                       ++|+|.+|+...-..      .  |. |... .+.  .......+......        +-++              .+
T Consensus       163 ~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  242 (481)
T TIGR01649       163 CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMG  242 (481)
T ss_pred             ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCC
Confidence             589999988532110      0  10 1000 000  00000000000000        0000              00


Q ss_pred             CC-------------cc--------CCCCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC
Q psy2160         338 PD-------------KM--------RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH  396 (773)
Q Consensus       338 ~~-------------~~--------~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~  396 (773)
                      +.             ..        .......+++|+|+||. +..+.+         ++|+++|+.||.|.+|.+... 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~-~~~vt~---------~~L~~lF~~yG~V~~vki~~~-  311 (481)
T TIGR01649       243 PPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLH-QEKVNC---------DRLFNLFCVYGNVERVKFMKN-  311 (481)
T ss_pred             CcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCC-CCCCCH---------HHHHHHHHhcCCeEEEEEEeC-
Confidence            00             00        00001356799999993 222332         789999999999999988754 


Q ss_pred             CCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC
Q psy2160         397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEA  476 (773)
Q Consensus       397 ~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~  476 (773)
                      .+|+|||+|.+.++|..|+..|||..+.|++|.|.+............  .....+..+..            +.  +..
T Consensus       312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~--~~~~~~~~~~d------------~~--~~~  375 (481)
T TIGR01649       312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG--QLDDGLTSYKD------------YS--SSR  375 (481)
T ss_pred             CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC--cCcCCCccccc------------cc--CCc
Confidence            479999999999999999999999999999999987543221000000  00000000000            00  000


Q ss_pred             CCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCc--ceeccCCCceEEEEEecCCCCCCcceEE
Q psy2160         477 YDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGL--VMKDVDTNQMKIKLYTDPYTKDFKGDAL  554 (773)
Q Consensus       477 ~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~--I~~~~~~~~~~i~l~~d~~tg~~kG~af  554 (773)
                      . ..+...    ..........+..+|||+|||.++|+++|+++|+.||.  |.        .|+++....  ..+|+||
T Consensus       376 ~-~r~~~~----~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~--------~ik~~~~~~--~~~~~gf  440 (481)
T TIGR01649       376 N-HRFKKP----GSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVK--------KFKFFPKDN--ERSKMGL  440 (481)
T ss_pred             c-ccCCCc----ccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccce--------EEEEecCCC--CcceeEE
Confidence            0 000000    00000011245689999999999999999999999998  65        688875542  3589999


Q ss_pred             EEeCChHHHHHHHHHhCCceecCeE------EEEEEcc
Q psy2160         555 CTYIKKESVDLALSILDGYEIRGKK------IKVERAK  586 (773)
Q Consensus       555 V~f~~~e~A~~Ai~~lng~~i~g~~------i~V~~a~  586 (773)
                      |+|.+.++|..||..|||+.|.|+.      |+|.+++
T Consensus       441 VeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~  478 (481)
T TIGR01649       441 LEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST  478 (481)
T ss_pred             EEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence            9999999999999999999999874      8998887

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0110|consensus

Probab=99.97  E-value=8e-30  Score=281.30  Aligned_cols=396  Identities=24%  Similarity=0.311  Sum_probs=262.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..-+|||+|||+.+++++|+.+|                               |||.|..++.|.+|...+||..+.||
T Consensus       226 etgrlf~RNLpyt~~eed~~~lf-------------------------------a~v~~~~~~~avka~~~~D~k~fqgr  274 (725)
T KOG0110|consen  226 ETGRLFVRNLPYTSTEEDLLKLF-------------------------------AFVTFMFPEHAVKAYSELDGKVFQGR  274 (725)
T ss_pred             hhhhhhhccCCccccHHHHHHhh-------------------------------HHHhhhhhHHHHhhhhhccccccccc
Confidence            67899999999999999999999                               68899999999999999999999999


Q ss_pred             EEEEEeecccccCC-CCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCC----------------------------
Q psy2160         294 KIKVERAKFTMKGE-AYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGE----------------------------  344 (773)
Q Consensus       294 ~I~V~~A~~~~k~~-~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~----------------------------  344 (773)
                      .|.|-+........ .++-...+ .+..++.++.. ..+....|++..+...                            
T Consensus       275 mlhvlp~~~k~~~~~~~~~~~~~-~k~~ke~~rk~-~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr  352 (725)
T KOG0110|consen  275 MLHVLPSKEKSTAKEDASELGSD-YKKEKELKRKA-ASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVR  352 (725)
T ss_pred             eeeecCcchhhhhhhhHhhcCCc-HHHHHHhcccc-chhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHH
Confidence            99986655321111 00000000 00011111000 1112222322111100                            


Q ss_pred             ----------------------------CCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC
Q psy2160         345 ----------------------------RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH  396 (773)
Q Consensus       345 ----------------------------~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~  396 (773)
                                                  ..+..++++++||  |.....         +.|.+.|..||.|..|.++   
T Consensus       353 ~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNl--pa~t~~---------~elt~~F~~fG~i~rvllp---  418 (725)
T KOG0110|consen  353 LALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNL--PAGTLS---------EELTEAFLRFGEIGRVLLP---  418 (725)
T ss_pred             HHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccC--cccccc---------HHHHHHhhcccccceeecC---
Confidence                                        1345578999999  444332         7899999999999999665   


Q ss_pred             CCe-EEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccch-hHHH-HHHHHHHHHHHhhhhhhhhhhhcccC
Q psy2160         397 PEG-VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQE-TAEE-REARLKKWETFLGKKIKVERAKFTMK  473 (773)
Q Consensus       397 ~~G-~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~-~~~e-~~~r~~~~~~~l~~~~~~~~~~~~~~  473 (773)
                      +.| .++|.|.++.+|..|+..|....|..-++.+.+.. ...+.... .... ...+..      ......++- ....
T Consensus       419 ~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP-~dvf~~~pka~~~~~e~~~~------~ee~~~Er~-s~~d  490 (725)
T KOG0110|consen  419 PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP-EDVFTEDPKADDLSAESRSK------MEENPSERV-SAED  490 (725)
T ss_pred             cccceeeeeecCccchHHHHHHhchhhhccCccccccCh-hhhccCCccccccccccccc------cccCcceec-cccc
Confidence            345 49999999999999999999999888888776432 22111000 0000 000000      000000000 0000


Q ss_pred             CC---CCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC---C
Q psy2160         474 GE---AYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---K  547 (773)
Q Consensus       474 G~---~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t---g  547 (773)
                      |.   +.+|......     ..........++|||+||++++|.++|..+|+..|.|.        +|.|..-+..   -
T Consensus       491 ~~v~eD~d~te~ss~-----a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl--------S~~I~kkkd~~~k~  557 (725)
T KOG0110|consen  491 GQVEEDKDPTEESSL-----ARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVL--------SIEISKKKDPANKY  557 (725)
T ss_pred             ccccccCCccccccc-----hhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEE--------EEEEeccccccccc
Confidence            00   0000000000     00011223345599999999999999999999999998        6777655431   2


Q ss_pred             CCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcccc
Q psy2160         548 DFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMR  627 (773)
Q Consensus       548 ~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  627 (773)
                      .+.|||||+|.++++|+.|++.|+|+.|.|+.|.|+.+.....+.  ...                   ....       
T Consensus       558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~--~gK-------------------~~~~-------  609 (725)
T KOG0110|consen  558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST--VGK-------------------KKSK-------  609 (725)
T ss_pred             cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc--ccc-------------------cccc-------
Confidence            356999999999999999999999999999999999988221111  000                   0000       


Q ss_pred             CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHh
Q psy2160         628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELL  703 (773)
Q Consensus       628 ~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~l  703 (773)
                         ......|+|+|++...+           ..+|+.+|+.||.|.+|.|+.    ..++|+|||.|-++.+|.+|+.+|
T Consensus       610 ---kk~~tKIlVRNipFeAt-----------~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al  675 (725)
T KOG0110|consen  610 ---KKKGTKILVRNIPFEAT-----------KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL  675 (725)
T ss_pred             ---ccccceeeeeccchHHH-----------HHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence               01136899999987654           489999999999999999876    345899999999999999999999


Q ss_pred             CCceeCCeEEEEEEec
Q psy2160         704 NGRWFGQRQITAETWD  719 (773)
Q Consensus       704 nGr~f~Gr~l~v~~~d  719 (773)
                      .+.+|-||+|++++..
T Consensus       676 ~STHlyGRrLVLEwA~  691 (725)
T KOG0110|consen  676 GSTHLYGRRLVLEWAK  691 (725)
T ss_pred             cccceechhhheehhc
Confidence            9999999999999854

>KOG0117|consensus

Probab=99.96  E-value=9.8e-28  Score=251.66  Aligned_cols=245  Identities=20%  Similarity=0.239  Sum_probs=202.8

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEee----CCCCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----DKHPEGVAQIFFKEPEAADACRELLNGR  421 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~----d~~~~G~afV~F~~~e~A~~Ai~~lng~  421 (773)
                      ....+-|||..|  |.++-+         ++|..+|.+.|.|..++|+    ++.++|||||.|.+.+.|+.||+.||+.
T Consensus        80 p~~G~EVfvGkI--PrD~~E---------deLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~  148 (506)
T KOG0117|consen   80 PPRGCEVFVGKI--PRDVFE---------DELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY  148 (506)
T ss_pred             CCCCceEEecCC--Cccccc---------hhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence            456778999999  555443         7899999999999999875    2568999999999999999999999999


Q ss_pred             cc-CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCC
Q psy2160         422 WF-GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEN  500 (773)
Q Consensus       422 ~~-~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~  500 (773)
                      .| .|+.|.|...                                                                ..+
T Consensus       149 Eir~GK~igvc~S----------------------------------------------------------------van  164 (506)
T KOG0117|consen  149 EIRPGKLLGVCVS----------------------------------------------------------------VAN  164 (506)
T ss_pred             cccCCCEeEEEEe----------------------------------------------------------------eec
Confidence            87 4899988652                                                                357


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CCCCcceEEEEeCChHHHHHHHHHhCCc--eecC
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSILDGY--EIRG  577 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg~~kG~afV~f~~~e~A~~Ai~~lng~--~i~g  577 (773)
                      ++|||+|||...++++|.+.|++.+.=..       +|.|+..+. ..+++|||||+|.++..|..|-+.|-..  .+.|
T Consensus       165 ~RLFiG~IPK~k~keeIlee~~kVteGVv-------dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg  237 (506)
T KOG0117|consen  165 CRLFIGNIPKTKKKEEILEEMKKVTEGVV-------DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG  237 (506)
T ss_pred             ceeEeccCCccccHHHHHHHHHhhCCCee-------EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence            99999999999999999999999876443       477877664 4688999999999999999998877544  4569


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      +.|.|.||......                              +.+     .+..-++|||+||...  ++        
T Consensus       238 n~~tVdWAep~~e~------------------------------ded-----~ms~VKvLYVRNL~~~--tT--------  272 (506)
T KOG0117|consen  238 NAITVDWAEPEEEP------------------------------DED-----TMSKVKVLYVRNLMES--TT--------  272 (506)
T ss_pred             CcceeeccCcccCC------------------------------Chh-----hhhheeeeeeeccchh--hh--------
Confidence            99999999843111                              111     1223589999999655  33        


Q ss_pred             HHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         658 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                       ++.|.++|++||.|++|+..+    .+|||.|.+.++|.+|+..|||..++|..|.|.+..+..
T Consensus       273 -eE~lk~~F~~~G~veRVkk~r----DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~  332 (506)
T KOG0117|consen  273 -EETLKKLFNEFGKVERVKKPR----DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD  332 (506)
T ss_pred             -HHHHHHHHHhccceEEeeccc----ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence             389999999999999998765    489999999999999999999999999999999966543

>KOG0148|consensus

Probab=99.96  E-value=2.3e-28  Score=241.54  Aligned_cols=229  Identities=25%  Similarity=0.434  Sum_probs=180.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+||..++||+-|..||+..|.|..        ++|+.|                                   
T Consensus         5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~--------~k~i~~-----------------------------------   41 (321)
T KOG0148|consen    5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTK--------TKVIFD-----------------------------------   41 (321)
T ss_pred             CCceEEeeccChhhHHHHHHHHHHhcccccc--------ceeehh-----------------------------------
Confidence            5689999999999999999999999999998        898876                                   


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|+|.++...  +....|.                                 .+..-.|++..| .+.. +.        
T Consensus        42 e~~v~wa~~p--~nQsk~t---------------------------------~~~hfhvfvgdl-s~eI-~~--------   76 (321)
T KOG0148|consen   42 ELKVNWATAP--GNQSKPT---------------------------------SNQHFHVFVGDL-SPEI-DN--------   76 (321)
T ss_pred             hhccccccCc--ccCCCCc---------------------------------cccceeEEehhc-chhc-ch--------
Confidence            4566555421  1100000                                 112335788877 3333 22        


Q ss_pred             HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                       ++|++.|.+||.|..+++..    ..++||+||.|-..++|+.||..|||.++++|.|+..++..+..        +..
T Consensus        77 -e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~--------e~n  147 (321)
T KOG0148|consen   77 -EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPS--------EMN  147 (321)
T ss_pred             -HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcc--------ccC
Confidence             88999999999999887763    46899999999999999999999999999999999998776540        000


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160         450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK  529 (773)
Q Consensus       450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~  529 (773)
                      .....|....                                  ......+|+|||+|++.-+|+++|++.|+.||.|. 
T Consensus       148 ~~~ltfdeV~----------------------------------NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~-  192 (321)
T KOG0148|consen  148 GKPLTFDEVY----------------------------------NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ-  192 (321)
T ss_pred             CCCccHHHHh----------------------------------ccCCCCCceEEeCCcCccccHHHHHHhcccCCcce-
Confidence            0000000000                                  12245789999999999999999999999999999 


Q ss_pred             ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                             .|+|..+      +|||||.|.+.|+|..||..+||.+|.|+.++|.|.+-
T Consensus       193 -------EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe  237 (321)
T KOG0148|consen  193 -------EVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE  237 (321)
T ss_pred             -------EEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence                   6999987      78999999999999999999999999999999999984

>KOG0144|consensus

Probab=99.95  E-value=1.3e-27  Score=249.40  Aligned_cols=308  Identities=20%  Similarity=0.300  Sum_probs=222.1

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce-ec
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-IR  291 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~-l~  291 (773)
                      +..-++||+-+|..++|.||+++|.+||.|.+        |.|++|+.||.++|||||.|.+.++|..|+..|++.. |.
T Consensus        32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~e--------inl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp  103 (510)
T KOG0144|consen   32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYE--------INLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP  103 (510)
T ss_pred             chhhhheeccCCccccHHHHHHHHHHhCceeE--------EEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence            47789999999999999999999999999999        9999999999999999999999999999999987764 55


Q ss_pred             C--eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHH
Q psy2160         292 G--KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTL  369 (773)
Q Consensus       292 g--~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~  369 (773)
                      |  .+|.|.+|..+...                                       ....+.|||+-|..  ...     
T Consensus       104 G~~~pvqvk~Ad~E~er---------------------------------------~~~e~KLFvg~lsK--~~t-----  137 (510)
T KOG0144|consen  104 GMHHPVQVKYADGERER---------------------------------------IVEERKLFVGMLSK--QCT-----  137 (510)
T ss_pred             CCCcceeecccchhhhc---------------------------------------cccchhhhhhhccc--ccc-----
Confidence            5  78889877622100                                       12245688888832  222     


Q ss_pred             HHHHHHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcc-cCC--eeEEEEecCCCcccccch
Q psy2160         370 ILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRW-FGQ--RQITAETWDGKTRYKIQE  443 (773)
Q Consensus       370 ~~ei~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~-~~G--r~I~v~~~~~~~~~~~~~  443 (773)
                          +.+|+++|++||.|++|.|..   +.++|||||.|.+.+.|..||+.|||.. +.|  .+|.|.++|.+..-....
T Consensus       138 ----e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~  213 (510)
T KOG0144|consen  138 ----ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR  213 (510)
T ss_pred             ----HHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence                378999999999999997763   5799999999999999999999999865 444  788999888654211111


Q ss_pred             h---HHHHHHHHHH---HHH------Hhhhhh------------------------h----hhh------------hh--
Q psy2160         444 T---AEEREARLKK---WET------FLGKKI------------------------K----VER------------AK--  469 (773)
Q Consensus       444 ~---~~e~~~r~~~---~~~------~l~~~~------------------------~----~~~------------~~--  469 (773)
                      .   ....-.++..   |.+      ......                        .    .+.            ..  
T Consensus       214 lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s  293 (510)
T KOG0144|consen  214 LQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASS  293 (510)
T ss_pred             HHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCC
Confidence            1   1111111111   100      000000                        0    000            00  


Q ss_pred             ---------cccCCCCCC------C--C----CCchH---Hh--------------------------------------
Q psy2160         470 ---------FTMKGEAYD------P--K----LKPKK---KR--------------------------------------  487 (773)
Q Consensus       470 ---------~~~~G~~~~------p--~----~~~~~---~r--------------------------------------  487 (773)
                               .+..|...+      +  .    ..+-.   .+                                      
T Consensus       294 ~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~lt  373 (510)
T KOG0144|consen  294 TQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLT  373 (510)
T ss_pred             cccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCC
Confidence                     000000000      0  0    00000   00                                      


Q ss_pred             --h------------------------------------hhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160         488 --K------------------------------------KDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK  529 (773)
Q Consensus       488 --~------------------------------------~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~  529 (773)
                        .                                    ..............|||.+||.+.-+.+|...|..||.|. 
T Consensus       374 p~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vl-  452 (510)
T KOG0144|consen  374 PFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVL-  452 (510)
T ss_pred             ChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhcccccee-
Confidence              0                                    0000011244568899999999999999999999999999 


Q ss_pred             ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160         530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~  586 (773)
                             +.++..|..||.+++|+||.|++..+|..||..|||..|++++++|+...
T Consensus       453 -------sakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~  502 (510)
T KOG0144|consen  453 -------SAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR  502 (510)
T ss_pred             -------EEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence                   79999999999999999999999999999999999999999999999766

>KOG0127|consensus

Probab=99.95  E-value=5.9e-27  Score=250.49  Aligned_cols=307  Identities=23%  Similarity=0.284  Sum_probs=209.9

Q ss_pred             CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC----CCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160         349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEGVAQIFFKEPEAADACRELLNGRWFG  424 (773)
Q Consensus       349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~----~~~G~afV~F~~~e~A~~Ai~~lng~~~~  424 (773)
                      +.+|||++|+-  ...         .++|.++|+.+|+|..+.+..+    .++||+||.|+-.++++.|+...++..|.
T Consensus         5 g~TlfV~~lp~--~~~---------~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~   73 (678)
T KOG0127|consen    5 GATLFVSRLPF--SST---------GEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE   73 (678)
T ss_pred             CceEEEecCCC--ccc---------hhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc
Confidence            37999999932  222         2889999999999999877642    46899999999999999999999999999


Q ss_pred             CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEE
Q psy2160         425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVY  504 (773)
Q Consensus       425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~  504 (773)
                      ||.|.+.++..+.+.......+..+         .+.                     +.  +........-..+..+|.
T Consensus        74 Gr~l~v~~A~~R~r~e~~~~~e~~~---------veK---------------------~~--~q~~~~k~~v~~~k~rLI  121 (678)
T KOG0127|consen   74 GRILNVDPAKKRARSEEVEKGENKA---------VEK---------------------PI--EQKRPTKAKVDLPKWRLI  121 (678)
T ss_pred             ceecccccccccccchhcccccchh---------hhc---------------------cc--ccCCcchhhccCccceEE
Confidence            9999998876554221100000000         000                     00  000000001122367899


Q ss_pred             EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEE
Q psy2160         505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER  584 (773)
Q Consensus       505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~  584 (773)
                      |+|||+.+...+|..+|+.||.|.        .|.|++...++.+ |||||+|....+|..|++.+||..|.||+|-|.|
T Consensus       122 IRNLPf~~k~~dLk~vFs~~G~V~--------Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW  192 (678)
T KOG0127|consen  122 IRNLPFKCKKPDLKNVFSNFGKVV--------EIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW  192 (678)
T ss_pred             eecCCcccCcHHHHHHHhhcceEE--------EEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence            999999999999999999999999        6999998885555 9999999999999999999999999999999999


Q ss_pred             cccccc--CCcCCC--CCCchhhhHHHHH------------------------HH----HH----HhhhccCCCCccccC
Q psy2160         585 AKFTMK--GEAYDP--KLKPKKKRKKDLE------------------------KL----KK----AQEKLFDWRPDKMRG  628 (773)
Q Consensus       585 a~~~~~--~~~~~~--~~~~~~~k~~~~~------------------------~~----~~----~~~~~~~~~~~~~~~  628 (773)
                      |.....  ..+...  +++.........+                        ..    ..    ..+.....++...++
T Consensus       193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~  272 (678)
T KOG0127|consen  193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG  272 (678)
T ss_pred             ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence            985422  110000  0000000000000                        00    00    000000000000000


Q ss_pred             --------------CCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEec--C--CCCCcEEEEEe
Q psy2160         629 --------------ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH--D--KHPEGVAQIFF  690 (773)
Q Consensus       629 --------------~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~--~--~~~~G~afV~F  690 (773)
                                    ......++|||+||+..  .+         +++|.++|++||.|..+.|.  .  +++.|.|||.|
T Consensus       273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD--~t---------EEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~F  341 (678)
T KOG0127|consen  273 KKESDKKAQNKTTRENITEGKTVFVRNLPFD--TT---------EEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKF  341 (678)
T ss_pred             cCcccchhccccccccccccceEEEecCCcc--cc---------HHHHHHHHHhhccceeEEEEeccCCCCcccceEEEe
Confidence                          00112589999999765  33         48999999999999987553  2  88999999999


Q ss_pred             cCHHHHHHHHHHh-----CC-ceeCCeEEEEEEe
Q psy2160         691 KEPEAADACRELL-----NG-RWFGQRQITAETW  718 (773)
Q Consensus       691 ~~~e~A~~Ai~~l-----nG-r~f~Gr~l~v~~~  718 (773)
                      .+..+|..||.+.     .| ..++||.|.|...
T Consensus       342 kt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A  375 (678)
T KOG0127|consen  342 KTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA  375 (678)
T ss_pred             ccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence            9999999999987     34 6789999999763

>KOG0148|consensus

Probab=99.94  E-value=3.8e-26  Score=225.84  Aligned_cols=174  Identities=20%  Similarity=0.279  Sum_probs=147.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..-.|||+-|.+.++-+.|++.|.+||.|.        .++|++|..|++++|||||.|.+.++|+.||..|||.-|++|
T Consensus        61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS--------~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R  132 (321)
T KOG0148|consen   61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVS--------DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR  132 (321)
T ss_pred             cceeEEehhcchhcchHHHHHHhccccccc--------cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence            356899999999999999999999999999        799999999999999999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      .|+-.||..+.....-.+         .   ......            .......++||+.|+...  +.+        
T Consensus       133 ~IRTNWATRKp~e~n~~~---------l---tfdeV~------------NQssp~NtsVY~G~I~~~--lte--------  178 (321)
T KOG0148|consen  133 TIRTNWATRKPSEMNGKP---------L---TFDEVY------------NQSSPDNTSVYVGNIASG--LTE--------  178 (321)
T ss_pred             eeeccccccCccccCCCC---------c---cHHHHh------------ccCCCCCceEEeCCcCcc--ccH--------
Confidence            999999984321110000         0   011111            122345689999999763  443        


Q ss_pred             HHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         659 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                       ++||+.|++||.|..|.|+...  |++||+|.+.|+|.+||..|||..++|..|+|+.
T Consensus       179 -~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW  234 (321)
T KOG0148|consen  179 -DLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW  234 (321)
T ss_pred             -HHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence             8999999999999999999865  9999999999999999999999999999999987

>KOG0123|consensus

Probab=99.94  E-value=4.6e-26  Score=248.08  Aligned_cols=276  Identities=23%  Similarity=0.341  Sum_probs=218.2

Q ss_pred             CCCccCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc
Q psy2160         206 PKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL  285 (773)
Q Consensus       206 ~~~~~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l  285 (773)
                      .-|.+.+|  +.|||.||+++++...|.++|+.||.|.+        |++.++.+ | ++|| ||+|.++++|.+||+++
T Consensus        69 im~s~rd~--~~~~i~nl~~~~~~~~~~d~f~~~g~ilS--------~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~  135 (369)
T KOG0123|consen   69 IMWSQRDP--SLVFIKNLDESIDNKSLYDTFSEFGNILS--------CKVATDEN-G-SKGY-FVQFESEESAKKAIEKL  135 (369)
T ss_pred             eehhccCC--ceeeecCCCcccCcHHHHHHHHhhcCeeE--------EEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHh
Confidence            45666665  33999999999999999999999999999        99999998 8 9999 99999999999999999


Q ss_pred             CCceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccch
Q psy2160         286 DGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDK  365 (773)
Q Consensus       286 ng~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~  365 (773)
                      ||..+.|++|.|..+.......  .+..                             . ....-..+++.|..  .... 
T Consensus       136 ng~ll~~kki~vg~~~~~~er~--~~~~-----------------------------~-~~~~~t~v~vk~~~--~~~~-  180 (369)
T KOG0123|consen  136 NGMLLNGKKIYVGLFERKEERE--APLG-----------------------------E-YKKRFTNVYVKNLE--EDST-  180 (369)
T ss_pred             cCcccCCCeeEEeeccchhhhc--cccc-----------------------------c-hhhhhhhhheeccc--cccc-
Confidence            9999999999997755211100  0000                             0 01123357777772  2222 


Q ss_pred             hhHHHHHHHHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccc
Q psy2160         366 DVTLILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQ  442 (773)
Q Consensus       366 d~~~~~ei~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~  442 (773)
                              ...|.+.|..+|.|..+.++.   +.+.|++||.|.++++|..|+..|||..+++..+.|.....+.     
T Consensus       181 --------~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~-----  247 (369)
T KOG0123|consen  181 --------DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS-----  247 (369)
T ss_pred             --------hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch-----
Confidence                    278999999999999998764   4579999999999999999999999999999999886543211     


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHH
Q psy2160         443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQ  522 (773)
Q Consensus       443 ~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~  522 (773)
                             .+...+..-.                            ..............+|||.||+..++.+.|...|+
T Consensus       248 -------e~~~~l~~~~----------------------------~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~  292 (369)
T KOG0123|consen  248 -------EREAELKRKF----------------------------EQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFS  292 (369)
T ss_pred             -------hhHHHHhhhh----------------------------HhhhhhccccccccccccccCccccchhHHHHHHh
Confidence                   0110000000                            00001112244568999999999999999999999


Q ss_pred             hcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160         523 KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       523 ~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~  586 (773)
                      .||.|.        +++|+.+.. |+++|+|||+|.+.++|..|+..+||..+.|++|.|.+++
T Consensus       293 ~~GeI~--------s~kv~~~~~-g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q  347 (369)
T KOG0123|consen  293 SFGEIT--------SAKVMVDEN-GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ  347 (369)
T ss_pred             ccccee--------eEEEEeccC-CCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence            999999        799999987 8999999999999999999999999999999999999887

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.93  E-value=2.5e-25  Score=241.19  Aligned_cols=167  Identities=25%  Similarity=0.396  Sum_probs=150.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|++|..||+++|||||+|.++++|..||+.||+..|.++
T Consensus       106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~--------v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr  177 (346)
T TIGR01659       106 SGTNLIVNYLPQDMTDRELYALFRTIGPINT--------CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK  177 (346)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence            7899999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|+|.+++                                                          +..           
T Consensus       178 ~i~V~~a~----------------------------------------------------------p~~-----------  188 (346)
T TIGR01659       178 RLKVSYAR----------------------------------------------------------PGG-----------  188 (346)
T ss_pred             eeeeeccc----------------------------------------------------------ccc-----------
Confidence            99995432                                                          000           


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                       +                                                                              
T Consensus       189 -~------------------------------------------------------------------------------  189 (346)
T TIGR01659       189 -E------------------------------------------------------------------------------  189 (346)
T ss_pred             -c------------------------------------------------------------------------------
Confidence             0                                                                              


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                                 ....++|||+|||.++|+++|+++|++||.|.     
T Consensus       190 -------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~-----  221 (346)
T TIGR01659       190 -------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV-----  221 (346)
T ss_pred             -------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEE-----
Confidence                                                       00124799999999999999999999999998     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC--eEEEEEEccc
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKVERAKF  587 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g--~~i~V~~a~~  587 (773)
                         .|+|++|..+|.++|||||+|.+.++|..||+.||+..+.|  ++|+|.+|..
T Consensus       222 ---~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~  274 (346)
T TIGR01659       222 ---QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE  274 (346)
T ss_pred             ---EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence               79999999899999999999999999999999999999875  7899999884

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.92  E-value=2.8e-24  Score=233.01  Aligned_cols=166  Identities=22%  Similarity=0.283  Sum_probs=144.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        +|+|++|..+|+++|||||+|.++++|..||..|||..|.
T Consensus       104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~--------~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~  175 (346)
T TIGR01659       104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPIN--------TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR  175 (346)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence            45679999999999999999999999999999        7999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160         577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  656 (773)
Q Consensus       577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~  656 (773)
                      +++|+|.++.....                                        ....++|+|.||+..  +++      
T Consensus       176 gr~i~V~~a~p~~~----------------------------------------~~~~~~lfV~nLp~~--vte------  207 (346)
T TIGR01659       176 NKRLKVSYARPGGE----------------------------------------SIKDTNLYVTNLPRT--ITD------  207 (346)
T ss_pred             Cceeeeeccccccc----------------------------------------ccccceeEEeCCCCc--ccH------
Confidence            99999998862100                                        011367999999765  443      


Q ss_pred             HHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEecCc
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGK  721 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G--r~l~v~~~dgk  721 (773)
                         ++|+++|++||.|..|.|..    +.++|+|||+|.+.++|.+||+.|||..|.|  +.|.|.+.+..
T Consensus       208 ---e~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~  275 (346)
T TIGR01659       208 ---DQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH  275 (346)
T ss_pred             ---HHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence               89999999999999987753    4678999999999999999999999999865  78999886543

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0144|consensus

Probab=99.91  E-value=1.6e-23  Score=218.95  Aligned_cols=161  Identities=22%  Similarity=0.315  Sum_probs=134.9

Q ss_pred             EEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcc-cCC
Q psy2160         351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRW-FGQ  425 (773)
Q Consensus       351 ~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~-~~G  425 (773)
                      .+||.-++  ..+.+         .||+++|++||.|..|.|..    +.++|||||.|.+.++|.+|+.+||+.. |.|
T Consensus        36 KlfVgqIp--rt~sE---------~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG  104 (510)
T KOG0144|consen   36 KLFVGQIP--RTASE---------KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG  104 (510)
T ss_pred             hheeccCC--ccccH---------HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence            48999984  44433         89999999999999998764    3579999999999999999999998754 444


Q ss_pred             --eeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160         426 --RQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV  503 (773)
Q Consensus       426 --r~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l  503 (773)
                        .+|.+.++++..                                                         ......+.|
T Consensus       105 ~~~pvqvk~Ad~E~---------------------------------------------------------er~~~e~KL  127 (510)
T KOG0144|consen  105 MHHPVQVKYADGER---------------------------------------------------------ERIVEERKL  127 (510)
T ss_pred             CCcceeecccchhh---------------------------------------------------------hccccchhh
Confidence              677777665431                                                         011246789


Q ss_pred             EEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce-ecC--eEE
Q psy2160         504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-IRG--KKI  580 (773)
Q Consensus       504 ~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~-i~g--~~i  580 (773)
                      ||+-|+..+|+.+|+++|++||.|.        +|.|++|+. |.+||||||+|.+.+.|..||+.|||.. ++|  .+|
T Consensus       128 Fvg~lsK~~te~evr~iFs~fG~Ie--------d~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL  198 (510)
T KOG0144|consen  128 FVGMLSKQCTENEVREIFSRFGHIE--------DCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL  198 (510)
T ss_pred             hhhhccccccHHHHHHHHHhhCccc--------hhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence            9999999999999999999999999        799999998 8999999999999999999999999975 566  599


Q ss_pred             EEEEcccc
Q psy2160         581 KVERAKFT  588 (773)
Q Consensus       581 ~V~~a~~~  588 (773)
                      .|.+|..+
T Consensus       199 VVkFADtq  206 (510)
T KOG0144|consen  199 VVKFADTQ  206 (510)
T ss_pred             EEEecccC
Confidence            99998643

>KOG1190|consensus

Probab=99.91  E-value=1.1e-22  Score=211.47  Aligned_cols=435  Identities=19%  Similarity=0.242  Sum_probs=266.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-----
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-----  288 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~-----  288 (773)
                      .+.-|.++|||.++||.||..++.+||.|..        +.+.+.+    +  .||++|.+.++|..   +.+..     
T Consensus        27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn--------~~~lkGk----n--QAflem~d~~sAvt---mv~~y~~~~p   89 (492)
T KOG1190|consen   27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTN--------LLMLKGK----N--QAFLEMADEESAVT---MVNYYTSVTP   89 (492)
T ss_pred             CcceeEeccCCccccHHHHHHhcccccceee--------eeeeccc----h--hhhhhhcchhhhhh---eeecccccCc
Confidence            4578999999999999999999999999997        7777643    3  79999999988754   33333     


Q ss_pred             eecCeEEEEEeecccccCCCCCCCCchhhhhHHH-HHHHHHHHhhhccCCC-CccCC--CCCCCCcEEEEecCCCccccc
Q psy2160         289 EIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKD-LEKLKKAQEKLFDWRP-DKMRG--ERSKNESVIIVKNLFDPALFD  364 (773)
Q Consensus       289 ~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~-~~~~~k~~~k~~~~~~-~~~~~--~~~~~~~~v~l~Nl~~p~~~~  364 (773)
                      .++|++|.|+++...+-.....|.    ..+.+. .......++-...... ....+  ..+..--.+++.||+.|-.+ 
T Consensus        90 ~lr~~~~yiq~sn~~~lkt~s~p~----q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVsl-  164 (492)
T KOG1190|consen   90 VLRGQPIYIQYSNHSELKTDSQPN----QIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSL-  164 (492)
T ss_pred             cccCcceeehhhhHHHHhccCchh----hhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEH-
Confidence            378999999886643211101111    011110 0000001111000001 00001  11222235788999888775 


Q ss_pred             hhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCc---cc
Q psy2160         365 KDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKT---RY  439 (773)
Q Consensus       365 ~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~---~~  439 (773)
                                +-|...|++||.|.+|..+.++..--|.|+|.+++.|..|-..|+|+.+..  ..|++.+..-..   +|
T Consensus       165 ----------DVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKy  234 (492)
T KOG1190|consen  165 ----------DVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKY  234 (492)
T ss_pred             ----------HHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeec
Confidence                      559999999999999999988766679999999999999999999998754  344443321110   11


Q ss_pred             ccchhHHHHHH--HHHHHHHHhhhhhhhhh-hhcccCCCCCCCCCCchHHhhhhH--hhhhcCCCCCEEEEcCCCC-CCC
Q psy2160         440 KIQETAEEREA--RLKKWETFLGKKIKVER-AKFTMKGEAYDPKLKPKKKRKKDL--EKLKKAQENTKVYVSNLPL-DLT  513 (773)
Q Consensus       440 ~~~~~~~e~~~--r~~~~~~~l~~~~~~~~-~~~~~~G~~~~p~~~~~~~r~~~~--~~~~~~~~~~~l~V~nLp~-~~t  513 (773)
                      ......+-...  ........++....... ......|   .|...+..-.....  +.......++.|.|.||.. .+|
T Consensus       235 nndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g---~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT  311 (492)
T KOG1190|consen  235 NNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHG---APLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT  311 (492)
T ss_pred             cccccccccCCCCCCCccccccchhhhccccccccccC---CcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence            10000000000  00000000000000000 0111111   11111111110000  1111111378899999954 599


Q ss_pred             HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCC-
Q psy2160         514 QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE-  592 (773)
Q Consensus       514 ~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~-  592 (773)
                      .+-|..+|+-||.|.        +|+|+.+.     +--|+|+|.+...|+.|+..|+|..+.|++|+|.+++.+.-.- 
T Consensus       312 ~d~LftlFgvYGdVq--------RVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp  378 (492)
T KOG1190|consen  312 PDVLFTLFGVYGDVQ--------RVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP  378 (492)
T ss_pred             hhHHHHHHhhhcceE--------EEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence            999999999999999        89999885     4579999999999999999999999999999999998652110 


Q ss_pred             ---cCCCCCCchhhhHHHHHHHHHHhhhccCCC-C-ccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHh
Q psy2160         593 ---AYDPKLKPKKKRKKDLEKLKKAQEKLFDWR-P-DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS  667 (773)
Q Consensus       593 ---~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~  667 (773)
                         .-+....+.           -....+.... + .......-+++.++.+.|++..  +.         +++|+..|.
T Consensus       379 ~egq~d~glT~d-----------y~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~s--vs---------ee~lk~~f~  436 (492)
T KOG1190|consen  379 REGQEDQGLTKD-----------YGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPS--VS---------EEDLKNLFQ  436 (492)
T ss_pred             CCCCcccccccc-----------CCCCchhhccCcccccccccCCchhheeeccCCcc--cc---------hhHHHHhhh
Confidence               000000000           0000000000 0 0001112356789999999766  44         389999999


Q ss_pred             cCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEe
Q psy2160         668 KCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETW  718 (773)
Q Consensus       668 ~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~  718 (773)
                      .-|.+.+...+-...+-+|.+.+.+.|+|..|+-.|++..++ +..|+|+|-
T Consensus       437 ~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS  488 (492)
T KOG1190|consen  437 EPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS  488 (492)
T ss_pred             cCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence            999776655554445679999999999999999999999997 559999984

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.91  E-value=2.5e-23  Score=236.55  Aligned_cols=177  Identities=20%  Similarity=0.293  Sum_probs=147.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|+.|+.+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus       105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~--------sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G  176 (612)
T TIGR01645       105 AIMCRVYVGSISFELREDTIRRAFDPFGPIK--------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG  176 (612)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHccCCEE--------EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence            4568999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      +.|+|.+.........                        ..++.     .......++|||.||+..  +++       
T Consensus       177 R~IkV~rp~~~p~a~~------------------------~~~~~-----~~~~~~~~rLfVgnLp~~--vte-------  218 (612)
T TIGR01645       177 RNIKVGRPSNMPQAQP------------------------IIDMV-----QEEAKKFNRIYVASVHPD--LSE-------  218 (612)
T ss_pred             ceeeeccccccccccc------------------------ccccc-----cccccccceEEeecCCCC--CCH-------
Confidence            9999986542110000                        00000     000123478999999654  443       


Q ss_pred             HHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         658 YQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                        ++|+++|++||.|.+|.|..    +.++|||||.|.+.++|.+||..|||..++|+.|.|.+.-...
T Consensus       219 --edLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP  285 (612)
T TIGR01645       219 --TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP  285 (612)
T ss_pred             --HHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence              89999999999999998864    4578999999999999999999999999999999998866544

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.91  E-value=6e-23  Score=234.38  Aligned_cols=212  Identities=27%  Similarity=0.401  Sum_probs=161.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||..+|+++|.++|+.||.|..        |.|+++..+|.++|||||+|.+.++|..|+..|||..|.|+
T Consensus       185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~  256 (457)
T TIGR01622       185 NFLKLYVGNLHFNITEQELRQIFEPFGDIED--------VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR  256 (457)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE
Confidence            5799999999999999999999999999998        99999999889999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCch-----hhhhHHHHHHHHHHHhhhccCC-------------------------------
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKP-----KKKRKKDLEKLKKAQEKLFDWR-------------------------------  337 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~-----~~~~~k~~~~~~k~~~k~~~~~-------------------------------  337 (773)
                      +|.|.+|...............     .............+..++..+.                               
T Consensus       257 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (457)
T TIGR01622       257 PIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIP  336 (457)
T ss_pred             EEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccc
Confidence            9999997632111000000000     0000000000001111111111                               


Q ss_pred             ------------CCccC--CCCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEE
Q psy2160         338 ------------PDKMR--GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI  403 (773)
Q Consensus       338 ------------~~~~~--~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV  403 (773)
                                  .....  .......++|+|.||+.+.+ ..++.+..++.+||+++|++||.|..|.+..+.+.|++||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~-~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV  415 (457)
T TIGR01622       337 SRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYL  415 (457)
T ss_pred             ccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcc-cccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEE
Confidence                        00000  00124678999999998865 5667899999999999999999999999988888999999


Q ss_pred             EecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160         404 FFKEPEAADACRELLNGRWFGQRQITAETWD  434 (773)
Q Consensus       404 ~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~  434 (773)
                      +|.+.++|.+|+..|||++|+|+.|.+.++.
T Consensus       416 ~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~  446 (457)
T TIGR01622       416 KFSSVDAALAAFQALNGRYFGGKMITAAFVV  446 (457)
T ss_pred             EECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence            9999999999999999999999999999875

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0110|consensus

Probab=99.90  E-value=1.2e-23  Score=232.58  Aligned_cols=289  Identities=22%  Similarity=0.307  Sum_probs=210.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..+-|+|+|||..+..++|..+|..||.|..        |.|+  +. |.   .|+|.|.++.+|..|++.|..+.+...
T Consensus       384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~r--------vllp--~~-G~---~aiv~fl~p~eAr~Afrklaysr~k~~  449 (725)
T KOG0110|consen  384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGR--------VLLP--PG-GT---GAIVEFLNPLEARKAFRKLAYSRFKSA  449 (725)
T ss_pred             hcceeeeccCccccccHHHHHHhhcccccce--------eecC--cc-cc---eeeeeecCccchHHHHHHhchhhhccC
Confidence            5689999999999999999999999999997        6443  43 44   499999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCc-----hhhh-hHHHHHHHHHHHhhhccCCCC--ccC----CCCCC-CCcEEEEecCCCc
Q psy2160         294 KIKVERAKFTMKGEAYDPKLK-----PKKK-RKKDLEKLKKAQEKLFDWRPD--KMR----GERSK-NESVIIVKNLFDP  360 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~-----~~~~-~~k~~~~~~k~~~k~~~~~~~--~~~----~~~~~-~~~~v~l~Nl~~p  360 (773)
                      +|.+.++........  |...     +... ......+. ...+....-+.+  ...    ..... ....+|++|+.-.
T Consensus       450 plyle~aP~dvf~~~--pka~~~~~e~~~~~ee~~~Er~-s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~  526 (725)
T KOG0110|consen  450 PLYLEWAPEDVFTED--PKADDLSAESRSKMEENPSERV-SAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFD  526 (725)
T ss_pred             ccccccChhhhccCC--ccccccccccccccccCcceec-ccccccccccCCccccccchhhhhccccchhhhhhcCCcc
Confidence            999988764333311  1100     0000 00000000 000111111111  000    00111 1222999999322


Q ss_pred             cccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC-------CCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEec
Q psy2160         361 ALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH-------PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW  433 (773)
Q Consensus       361 ~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~-------~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~  433 (773)
                      +.           .+++...|.+.|.|..+.|....       +.|+|||+|.++++|+.|+..|+|..+.|+.|.+.+.
T Consensus       527 Tt-----------~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S  595 (725)
T KOG0110|consen  527 TT-----------LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS  595 (725)
T ss_pred             cc-----------hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence            22           38899999999999999776322       4599999999999999999999999999999999876


Q ss_pred             CCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCC
Q psy2160         434 DGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLT  513 (773)
Q Consensus       434 ~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t  513 (773)
                      ..+..-                                ..|    +.             .......+.|.|+|||+..+
T Consensus       596 ~~k~~~--------------------------------~~g----K~-------------~~~kk~~tKIlVRNipFeAt  626 (725)
T KOG0110|consen  596 ENKPAS--------------------------------TVG----KK-------------KSKKKKGTKILVRNIPFEAT  626 (725)
T ss_pred             cCcccc--------------------------------ccc----cc-------------cccccccceeeeeccchHHH
Confidence            511100                                000    00             01122368999999999999


Q ss_pred             HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         514 QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       514 ~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                      ..+|+.+|..||.|.        +|+|+.-...+.++|||||.|.++.+|.+|+..|.++.+.||.|.++||+.
T Consensus       627 ~rEVr~LF~aFGqlk--------svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~  692 (725)
T KOG0110|consen  627 KREVRKLFTAFGQLK--------SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS  692 (725)
T ss_pred             HHHHHHHHhccccee--------eeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence            999999999999999        799988755577899999999999999999999999999999999999994

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.90  E-value=1.8e-22  Score=233.69  Aligned_cols=200  Identities=24%  Similarity=0.322  Sum_probs=156.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||..+|+++|.++|+.||.|..        +.|+++..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus       294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~  365 (509)
T TIGR01642       294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKA--------FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN  365 (509)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            5689999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|.+|...............  ..  .......+....+        ......+++|+|.||+.+.++.++ +.+.+|
T Consensus       366 ~l~v~~a~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--------~~~~~~s~v~~l~N~~~~~~l~~d-~~~~~~  432 (509)
T TIGR01642       366 KLHVQRACVGANQATIDTSNGM--AP--VTLLAKALSQSIL--------QIGGKPTKVVQLTNLVTGDDLMDD-EEYEEI  432 (509)
T ss_pred             EEEEEECccCCCCCCccccccc--cc--cccccccchhhhc--------cccCCCceEEEeccCCchhHhcCc-chHHHH
Confidence            9999998754322100000000  00  0000000000000        011234689999999888776544 345678


Q ss_pred             HHHHHHHhhccCCEEEEEeeCC-------CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160         374 QQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  434 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~-------~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~  434 (773)
                      .++|+++|++||.|..|.|+..       ...|+|||+|.+.++|.+|+..|||+.|+|+.|.+.+++
T Consensus       433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~  500 (509)
T TIGR01642       433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG  500 (509)
T ss_pred             HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence            8999999999999999988742       236899999999999999999999999999999999875

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0120|consensus

Probab=99.89  E-value=3.4e-22  Score=219.54  Aligned_cols=197  Identities=26%  Similarity=0.401  Sum_probs=162.4

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..+.+||+|||..+++.++.++...||.+.        ...++.|..+|.++||||++|.++.....|+..|||+.++++
T Consensus       288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk--------~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~  359 (500)
T KOG0120|consen  288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLK--------AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK  359 (500)
T ss_pred             ccchhhhccCcCccCHHHHHHHHHhcccch--------hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence            457899999999999999999999999999        799999999999999999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      .|.|+.|-...+...........     ...-+..           .+......++.+|++.||.++.++. |.+.+.+|
T Consensus       360 ~lvvq~A~~g~~~~~~~~~~~~~-----~~~~i~~-----------~~~q~~g~~t~Vl~L~n~Vt~deLk-dd~EyeeI  422 (500)
T KOG0120|consen  360 KLVVQRAIVGASNANVNFNISQS-----QVPGIPL-----------LMTQMAGIPTEVLCLTNVVTPDELK-DDEEYEEI  422 (500)
T ss_pred             eeEeehhhccchhccccCCcccc-----ccccchh-----------hhcccCCCcchhhhhhhcCCHHHhc-chHHHHHH
Confidence            99999987543321111110000     0000000           0012234568999999999998887 56779999


Q ss_pred             HHHHHHHHhcCCceeEEEecCC-------CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160         659 QQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  720 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~~-------~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg  720 (773)
                      .++|+.+|++||.|.+|.|++.       -..|.+||+|++.+++.+|+.+|+||.|+||.|.++|||.
T Consensus       423 lEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde  491 (500)
T KOG0120|consen  423 LEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE  491 (500)
T ss_pred             HHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence            9999999999999999998763       2358899999999999999999999999999999999985

>KOG4212|consensus

Probab=99.88  E-value=2.7e-21  Score=201.96  Aligned_cols=244  Identities=18%  Similarity=0.207  Sum_probs=182.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHh-hcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQ-KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs-~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..+.|||+|||+++.-.+|+++|. +.|.|..        |.|..|.. |+++|+|.|+|.++|.+++|++.||.+.+.|
T Consensus        43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~y--------veLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G  113 (608)
T KOG4212|consen   43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEY--------VELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNG  113 (608)
T ss_pred             ccceEEEecCcchhhhHhHHHHHHHhcCceEe--------eeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccC
Confidence            566799999999999999999998 8899999        99999999 9999999999999999999999999999999


Q ss_pred             eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHH
Q psy2160         293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  372 (773)
Q Consensus       293 ~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~e  372 (773)
                      |+|.|.--.......                                  .+...+...++|+.++-...-.         
T Consensus       114 R~l~vKEd~d~q~~~----------------------------------~~~~~r~g~~~f~~~~~~q~G~---------  150 (608)
T KOG4212|consen  114 RELVVKEDHDEQRDQ----------------------------------YGRIVRDGGGGFGGGGGVQGGN---------  150 (608)
T ss_pred             ceEEEeccCchhhhh----------------------------------hhheeeccCcccccCcceeccc---------
Confidence            999994321100000                                  0001233445666666221111         


Q ss_pred             HHHHHHHHhhccCCEEEEEe---eCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         373 YQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       373 i~edL~e~f~k~G~V~~V~i---~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                        ..|...|+--|.+.+-.+   .|+.+++..++.|...-.+..++..+++....-|+++. +                 
T Consensus       151 --~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f-----------------  210 (608)
T KOG4212|consen  151 --GGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-F-----------------  210 (608)
T ss_pred             --ccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccC-C-----------------
Confidence              234445555554432222   24567888999999888888887766654433333332 0                 


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160         450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK  529 (773)
Q Consensus       450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~  529 (773)
                                                                    .++....+||.||...+....|+++|.-.|.|. 
T Consensus       211 ----------------------------------------------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~-  243 (608)
T KOG4212|consen  211 ----------------------------------------------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ-  243 (608)
T ss_pred             ----------------------------------------------CCCccceeeeeccccccchHHHHHHhccceeee-
Confidence                                                          022356899999999999999999999999998 


Q ss_pred             ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEE
Q psy2160         530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER  584 (773)
Q Consensus       530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~  584 (773)
                             .|-+-.|+. |.++|+|.|+|..+-.|..||..|++.-+..+++.+.+
T Consensus       244 -------~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl  290 (608)
T KOG4212|consen  244 -------SVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL  290 (608)
T ss_pred             -------eeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence                   789999988 79999999999999999999999997666666666554

>KOG0147|consensus

Probab=99.87  E-value=9.1e-22  Score=212.78  Aligned_cols=219  Identities=24%  Similarity=0.394  Sum_probs=162.3

Q ss_pred             CCCCCCccCCC---CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHH
Q psy2160         203 PEPPKWFDIGE---ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD  279 (773)
Q Consensus       203 ~~~~~~~~~~~---~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~  279 (773)
                      +.-..|++...   ...+|||+||..++|++.|+.+|..||.|..        |.+.+|..||.++||+||+|.+.++|.
T Consensus       263 a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~--------v~l~~d~~tG~skgfGfi~f~~~~~ar  334 (549)
T KOG0147|consen  263 ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN--------VQLTKDSETGRSKGFGFITFVNKEDAR  334 (549)
T ss_pred             HhccccccccccccchhhhhhcccccCchHHHHhhhccCccccee--------eeeccccccccccCcceEEEecHHHHH
Confidence            33345665432   3334999999999999999999999999998        999999988999999999999999999


Q ss_pred             HHHHHcCCceecCeEEEEEeecccccCCC-------CC-------CCCchhhhhHHHHHHHH------------------
Q psy2160         280 LALSILDGYEIRGKKIKVERAKFTMKGEA-------YD-------PKLKPKKKRKKDLEKLK------------------  327 (773)
Q Consensus       280 ~Al~~lng~~l~g~~I~V~~A~~~~k~~~-------~~-------p~~~~~~~~~k~~~~~~------------------  327 (773)
                      .|+..|||.+|.|+.|+|...........       .|       +.....  +.+-..++.                  
T Consensus       335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g--~~Ql~~kla~~~~~~~~s~~~~~l~~~  412 (549)
T KOG0147|consen  335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGG--RNQLMAKLAEGKGRSLPSTAISALLLL  412 (549)
T ss_pred             HHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccccccc--HHHHHHHHhccCCccccchhhhHHHhc
Confidence            99999999999999999976553222110       00       110000  000000000                  


Q ss_pred             -HHHhhhccCCC--CccCCCCC-------CCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCC
Q psy2160         328 -KAQEKLFDWRP--DKMRGERS-------KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP  397 (773)
Q Consensus       328 -k~~~k~~~~~~--~~~~~~~~-------~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~  397 (773)
                       ++.... ..++  ......+.       ..+.|+.|+|||+|.+ ++.|++..+|++||.++|++||.|.+|.+..+ +
T Consensus       413 ~~~~~~~-~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpst-ete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s  489 (549)
T KOG0147|consen  413 AKLASAA-QFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPST-ETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-S  489 (549)
T ss_pred             cccchHH-hhcCCcCccccCccccccccCCccHHHHHhhcCCccc-ccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-C
Confidence             000000 0000  00000112       5678899999999987 55699999999999999999999999987654 4


Q ss_pred             CeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160         398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  434 (773)
Q Consensus       398 ~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~  434 (773)
                      .|++||+|.+.+.|..|+..|||+||.|+.|.+.+..
T Consensus       490 ~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~  526 (549)
T KOG0147|consen  490 AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP  526 (549)
T ss_pred             CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence            5999999999999999999999999999999998753

>KOG0131|consensus

Probab=99.85  E-value=7.3e-21  Score=178.78  Aligned_cols=166  Identities=25%  Similarity=0.367  Sum_probs=142.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ....+|||+||+..++++.|.++|-++|+|.        ++++.+|..+...+|||||+|.++|+|+-||+.||...+.|
T Consensus         7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv--------~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg   78 (203)
T KOG0131|consen    7 NQDATLYVGNLDEKVSEELLYELFIQAGPVV--------NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG   78 (203)
T ss_pred             CCCceEEEecCCHHHHHHHHHHHHHhcCcee--------eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence            4568999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      ++|+|..|....+.                                       ..-+.+++|+||..  ++++       
T Consensus        79 rpIrv~kas~~~~n---------------------------------------l~vganlfvgNLd~--~vDe-------  110 (203)
T KOG0131|consen   79 RPIRVNKASAHQKN---------------------------------------LDVGANLFVGNLDP--EVDE-------  110 (203)
T ss_pred             ceeEEEeccccccc---------------------------------------ccccccccccccCc--chhH-------
Confidence            99999988721110                                       01136799999954  3553       


Q ss_pred             HHHHHHHHHhcCCceeEE-Ee-cC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         658 YQQDLREECSKCGHVKKV-VL-HD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v-~i-~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                        ..|.+.|+.||.+.+. .| ++   ++++|++||.|.+.+++.+|+.+|||..++.|+|.|+|...+
T Consensus       111 --~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~  177 (203)
T KOG0131|consen  111 --KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK  177 (203)
T ss_pred             --HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence              7899999999998863 22 21   688999999999999999999999999999999999995443

>KOG0131|consensus

Probab=99.82  E-value=3.6e-20  Score=174.15  Aligned_cols=165  Identities=27%  Similarity=0.394  Sum_probs=141.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      +..+|||+||+..+|++.|.++|-++|+|..        |+|++|.-|...+|||||+|.++|+|+-||+.||.-.|.|+
T Consensus         8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~--------i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr   79 (203)
T KOG0131|consen    8 QDATLYVGNLDEKVSEELLYELFIQAGPVVN--------LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR   79 (203)
T ss_pred             CCceEEEecCCHHHHHHHHHHHHHhcCceee--------eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence            6789999999999999999999999999998        99999999899999999999999999999999998889999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|+|..|....+ .                                      ...+..++|+|| .| +.++        
T Consensus        80 pIrv~kas~~~~-n--------------------------------------l~vganlfvgNL-d~-~vDe--------  110 (203)
T KOG0131|consen   80 PIRVNKASAHQK-N--------------------------------------LDVGANLFVGNL-DP-EVDE--------  110 (203)
T ss_pred             eeEEEecccccc-c--------------------------------------cccccccccccc-Cc-chhH--------
Confidence            999987761110 0                                      223457999999 45 3343        


Q ss_pred             HHHHHHHhhccCCEEEE---Ee-eC-CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCC
Q psy2160         374 QQDLREECSKCGHVKKV---VL-HD-KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  436 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V---~i-~d-~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~  436 (773)
                       ..|.+.|+.||.+...   .. .+ +++.|++||.|.+.+.+.+|+..|||..+..|+|.+.++..+
T Consensus       111 -~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~  177 (203)
T KOG0131|consen  111 -KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK  177 (203)
T ss_pred             -HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence             6799999999998752   21 12 578999999999999999999999999999999999987544

>KOG1456|consensus

Probab=99.76  E-value=4.8e-16  Score=160.30  Aligned_cols=406  Identities=16%  Similarity=0.165  Sum_probs=245.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--eec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l~  291 (773)
                      .+--|.|++|-..+++.+|.+..+.||.|..        |.++..      +..|+|+|.+.+.|..++...-..  .+.
T Consensus        30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~y--------vt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~   95 (494)
T KOG1456|consen   30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAY--------VTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIA   95 (494)
T ss_pred             CCceEEEeccccccchhHHHHHHhcCCceEE--------EEeccc------cceeeeeeccccchhhheehhccCccccc
Confidence            5678999999999999999999999999986        444432      347999999999999998643222  234


Q ss_pred             CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHH
Q psy2160         292 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  371 (773)
Q Consensus       292 g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~  371 (773)
                      |..-.+.++..+-                            +..     +.........+|++.-| .|.-..+      
T Consensus        96 gq~Al~NyStsq~----------------------------i~R-----~g~es~~pN~VLl~TIl-Np~YpIt------  135 (494)
T KOG1456|consen   96 GQQALFNYSTSQC----------------------------IER-----PGDESATPNKVLLFTIL-NPQYPIT------  135 (494)
T ss_pred             Cchhhcccchhhh----------------------------hcc-----CCCCCCCCCeEEEEEee-cCccccc------
Confidence            4443332221100                            000     00111233444444333 3322111      


Q ss_pred             HHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC--CeeEEEEecCCCcccccchhHHHHH
Q psy2160         372 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG--QRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       372 ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~--Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                        -+-|..+|...|.|.+|.|+.++ --.|.|+|.+.+.|++|-..|||.-+.  --.|+++++.+..-.......+   
T Consensus       136 --vDVly~Icnp~GkVlRIvIfkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~D---  209 (494)
T KOG1456|consen  136 --VDVLYTICNPQGKVLRIVIFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKD---  209 (494)
T ss_pred             --hhhhhhhcCCCCceEEEEEEecc-ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCc---
Confidence              15699999999999999999762 345999999999999999999998763  3667777765432111110000   


Q ss_pred             HHHHHHHHHhhhh------hhh-----hhhhc-----cc-CC-------C-CCCCC-CCchHHhhh-----hHhhhhcCC
Q psy2160         450 ARLKKWETFLGKK------IKV-----ERAKF-----TM-KG-------E-AYDPK-LKPKKKRKK-----DLEKLKKAQ  498 (773)
Q Consensus       450 ~r~~~~~~~l~~~------~~~-----~~~~~-----~~-~G-------~-~~~p~-~~~~~~r~~-----~~~~~~~~~  498 (773)
                          .|.-.+...      +..     .++.+     +. .|       . .-.|. ..|...+..     ...+.....
T Consensus       210 ----twDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~  285 (494)
T KOG1456|consen  210 ----TWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGA  285 (494)
T ss_pred             ----cccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCC
Confidence                011000000      000     00000     00 00       0 00111 111111111     111223455


Q ss_pred             CCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      +.+.+.|.+|... ++-+.|..+|..||.|.        +|++++-.     .|.|+|++.+...+++|+..||+..+.|
T Consensus       286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~--------rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG  352 (494)
T KOG1456|consen  286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVE--------RVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFG  352 (494)
T ss_pred             CCcEEEEEeccccccchhhhhhhhhhcCcee--------eEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence            7799999999766 67899999999999999        89999775     6899999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      .+|.|..++...-.. .++-+-+.-.  -..+........-+.-...........++++|...|.|..  +++       
T Consensus       353 ~kl~v~~SkQ~~v~~-~~pflLpDgS--pSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~--vtE-------  420 (494)
T KOG1456|consen  353 GKLNVCVSKQNFVSP-VQPFLLPDGS--PSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLG--VTE-------  420 (494)
T ss_pred             ceEEEeecccccccc-CCceecCCCC--cchhhcccccccccCChhHhhcccccCCcceeEEecCCCc--cCH-------
Confidence            999999887431110 0110000000  0000000000000000000011123456899999998654  554       


Q ss_pred             HHHHHHHHHhcCC-ceeEEEecCCCC--CcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160         658 YQQDLREECSKCG-HVKKVVLHDKHP--EGVAQIFFKEPEAADACRELLNGRWFGQ  710 (773)
Q Consensus       658 l~edl~~~f~~fG-~V~~v~i~~~~~--~G~afV~F~~~e~A~~Ai~~lnGr~f~G  710 (773)
                        +.|.++|...+ .-++|.|++..+  .--+.++|++.++|..|+..+|...+.|
T Consensus       421 --e~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~  474 (494)
T KOG1456|consen  421 --EQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEG  474 (494)
T ss_pred             --HHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccC
Confidence              78888887665 356788887332  2457899999999999999999988864

>KOG0109|consensus

Probab=99.75  E-value=4.7e-18  Score=170.30  Aligned_cols=146  Identities=24%  Similarity=0.357  Sum_probs=130.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ..|||+|||..+++.+|+.+|++||.|.        .|.|+        +.||||..++...|..||+.|||..|.|..|
T Consensus         3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl--------ECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nI   66 (346)
T KOG0109|consen    3 VKLFIGNLPREATEQELRSLFEQYGKVL--------ECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNI   66 (346)
T ss_pred             cchhccCCCcccchHHHHHHHHhhCceE--------eeeee--------cccceEEeecccccHHHHhhcccceecceEE
Confidence            4799999999999999999999999999        58888        4589999999999999999999999999999


Q ss_pred             EEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHH
Q psy2160         581 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ  660 (773)
Q Consensus       581 ~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~e  660 (773)
                      .|+.++..                                          .+.+..|.|.|+...  ...         .
T Consensus        67 nVeaSksK------------------------------------------sk~stkl~vgNis~t--ctn---------~   93 (346)
T KOG0109|consen   67 NVEASKSK------------------------------------------SKASTKLHVGNISPT--CTN---------Q   93 (346)
T ss_pred             EEEecccc------------------------------------------CCCccccccCCCCcc--ccC---------H
Confidence            99988832                                          123477999999544  333         7


Q ss_pred             HHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEec
Q psy2160         661 DLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  719 (773)
Q Consensus       661 dl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~d  719 (773)
                      +||..|++||.|+.+.|..    +++||+|.-.++|..||+.|||+.|.|++++|+.--
T Consensus        94 ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st  148 (346)
T KOG0109|consen   94 ELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST  148 (346)
T ss_pred             HHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence            9999999999999998877    789999999999999999999999999999999743

>KOG0146|consensus

Probab=99.75  E-value=1.9e-17  Score=163.68  Aligned_cols=83  Identities=19%  Similarity=0.426  Sum_probs=78.6

Q ss_pred             cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      .....|+|||..||...++.+|..+|-.||.|.        +.+|+.|+.|+.+++||||.|+++.+|+.||..|||+.|
T Consensus       281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhiv--------SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI  352 (371)
T KOG0146|consen  281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIV--------SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI  352 (371)
T ss_pred             cCCCcceEEEEeCchhhccHHHHHHhcccccee--------eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh
Confidence            356789999999999999999999999999999        899999999999999999999999999999999999999


Q ss_pred             cCeEEEEEEcc
Q psy2160         576 RGKKIKVERAK  586 (773)
Q Consensus       576 ~g~~i~V~~a~  586 (773)
                      +-++|+|+.-.
T Consensus       353 GMKRLKVQLKR  363 (371)
T KOG0146|consen  353 GMKRLKVQLKR  363 (371)
T ss_pred             hhhhhhhhhcC
Confidence            99999998755

>KOG1190|consensus

Probab=99.72  E-value=4.4e-16  Score=162.56  Aligned_cols=311  Identities=20%  Similarity=0.231  Sum_probs=199.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcce-EEEEEecChHHHHHHHHHcCCceec-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG-DALCTYIKKESVDLALSILDGYEIR-  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG-~AfV~F~~~esA~~Al~~lng~~l~-  291 (773)
                      .--+++|.|+-+.+|-+-|+.+|++||.|..        |.-..     ++.| .|+|.|.+.++|..|-..|+|..|. 
T Consensus       149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlK--------IiTF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyn  215 (492)
T KOG1190|consen  149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLK--------IITFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYN  215 (492)
T ss_pred             eeEEEEeccceeeeEHHHHHHHHhhcceeEE--------EEEEe-----cccchhhhhhccchhhHHHHHHhccCCcccC
Confidence            3457789999999999999999999999986        43332     2233 4999999999999999999999884 


Q ss_pred             C-eEEEEEeecccccCCCCC---------CCCchhhhhHHHHHHHHHHHhhhccCC------CCc------------cCC
Q psy2160         292 G-KKIKVERAKFTMKGEAYD---------PKLKPKKKRKKDLEKLKKAQEKLFDWR------PDK------------MRG  343 (773)
Q Consensus       292 g-~~I~V~~A~~~~k~~~~~---------p~~~~~~~~~k~~~~~~k~~~k~~~~~------~~~------------~~~  343 (773)
                      | ..|+|.+++...-...|+         |..... ..   ..-+..+-...+.-.      |..            ..-
T Consensus       216 gcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~g-d~---~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~  291 (492)
T KOG1190|consen  216 GCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVG-DG---QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKI  291 (492)
T ss_pred             ceeEEEeehhhcccceeeccccccccccCCCCCCC-cc---ccccchhhhccccccccccCCcccCCccchhhccccccc
Confidence            4 788888776421111111         111000 00   000000000000000      000            000


Q ss_pred             CCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160         344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF  423 (773)
Q Consensus       344 ~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~  423 (773)
                      .....+.+|.+.|+ .+.....         +.|..+|+-||.|.+|.|..++. --|.|++.+...|+.|+..|+|..+
T Consensus       292 ~~~~~n~vllvsnl-n~~~VT~---------d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l  360 (492)
T KOG1190|consen  292 ESPSANVVLLVSNL-NEEAVTP---------DVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKL  360 (492)
T ss_pred             ccCCCceEEEEecC-chhccch---------hHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhccee
Confidence            01112567888888 3333332         67999999999999999987764 7799999999999999999999999


Q ss_pred             CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160         424 GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV  503 (773)
Q Consensus       424 ~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l  503 (773)
                      .|++|++.+..... ..+..                  ++..++ .++   .++.++.-.+-++.....-...-++..+|
T Consensus       361 ~gk~lrvt~SKH~~-vqlp~------------------egq~d~-glT---~dy~~spLhrfkkpgsKN~~ni~Ppsatl  417 (492)
T KOG1190|consen  361 YGKKLRVTLSKHTN-VQLPR------------------EGQEDQ-GLT---KDYGNSPLHRFKKPGSKNYQNIFPPSATL  417 (492)
T ss_pred             cCceEEEeeccCcc-ccCCC------------------CCCccc-ccc---ccCCCCchhhccCcccccccccCCchhhe
Confidence            99999998754222 11110                  000000 000   01111111111111100001122456799


Q ss_pred             EEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC-eEEEE
Q psy2160         504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-KKIKV  582 (773)
Q Consensus       504 ~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g-~~i~V  582 (773)
                      ++.|+|.++++++|+.+|..-|....       -.+..     ++.+.+|++.+.+.|.|..|+-.+|.+.+++ ..|+|
T Consensus       418 Hlsnip~svsee~lk~~f~~~g~~vk-------afkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv  485 (492)
T KOG1190|consen  418 HLSNIPPSVSEEDLKNLFQEPGGQVK-------AFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV  485 (492)
T ss_pred             eeccCCcccchhHHHHhhhcCCceEE-------eeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence            99999999999999999999988741       22332     3347799999999999999999999999985 48999


Q ss_pred             EEccc
Q psy2160         583 ERAKF  587 (773)
Q Consensus       583 ~~a~~  587 (773)
                      ++++.
T Consensus       486 SFSks  490 (492)
T KOG1190|consen  486 SFSKS  490 (492)
T ss_pred             Eeecc
Confidence            99873

>KOG4211|consensus

Probab=99.71  E-value=5.2e-16  Score=166.35  Aligned_cols=304  Identities=18%  Similarity=0.227  Sum_probs=193.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..--|-+++||++||++||.+||+.|++ ..        +.+.+.  +|+..|.|||+|.+.+++.+||+ +|...+..|
T Consensus         9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~I-~~--------~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R   76 (510)
T KOG4211|consen    9 TAFEVRLRGLPWSATEKEILDFFSNCGI-EN--------LEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHR   76 (510)
T ss_pred             cceEEEecCCCccccHHHHHHHHhcCce-eE--------EEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence            5567889999999999999999999985 33        455543  49999999999999999999998 788888999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|.|..+....                             .+|--.......+...-+|-|+.|  |....+        
T Consensus        77 YIEVf~~~~~e-----------------------------~d~~~~~~g~~s~~~d~vVRLRGL--Pfscte--------  117 (510)
T KOG4211|consen   77 YIEVFTAGGAE-----------------------------ADWVMRPGGPNSSANDGVVRLRGL--PFSCTE--------  117 (510)
T ss_pred             eEEEEccCCcc-----------------------------ccccccCCCCCCCCCCceEEecCC--CccCcH--------
Confidence            99997664211                             111111111111234678999999  444433        


Q ss_pred             HHHHHHHhhccCCEEE-EEee---CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         374 QQDLREECSKCGHVKK-VVLH---DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~-V~i~---d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                       +||.++|+..-.|.. |.++   ..++.|-|||+|.+.+.|+.|+.. |...++-|-|.|................   
T Consensus       118 -~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~---  192 (510)
T KOG4211|consen  118 -EDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGD---  192 (510)
T ss_pred             -HHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccc---
Confidence             899999999877776 3233   346889999999999999999985 7788888999886432111000000000   


Q ss_pred             HHHHHHHHHhh------------hhhhhh---hhhcccCC----CC----------------CCCCCCch--HHhhhhHh
Q psy2160         450 ARLKKWETFLG------------KKIKVE---RAKFTMKG----EA----------------YDPKLKPK--KKRKKDLE  492 (773)
Q Consensus       450 ~r~~~~~~~l~------------~~~~~~---~~~~~~~G----~~----------------~~p~~~~~--~~r~~~~~  492 (773)
                      .+...-+.|-.            ......   +......|    +.                -.+.+...  ..+.....
T Consensus       193 ~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g  272 (510)
T KOG4211|consen  193 GRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAG  272 (510)
T ss_pred             cccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcc
Confidence            00000000000            000000   00000000    00                00000000  00000000


Q ss_pred             hh-hcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         493 KL-KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       493 ~~-~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      .. .-......++.++||.+.+..+|..+|+..-.+.         |+|-..+. |+.+|-|+|+|.+.++|..|+ .-+
T Consensus       273 ~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~---------v~i~ig~d-Gr~TGEAdveF~t~edav~Am-skd  341 (510)
T KOG4211|consen  273 DYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYR---------VHIEIGPD-GRATGEADVEFATGEDAVGAM-GKD  341 (510)
T ss_pred             cccCCCCCCceeeecCCCccCCCcchhhhcCCCCcee---------EEEEeCCC-CccCCcceeecccchhhHhhh-ccC
Confidence            00 1122337899999999999999999999888774         88888776 999999999999999999999 467


Q ss_pred             CceecCeEEEEEE
Q psy2160         572 GYEIRGKKIKVER  584 (773)
Q Consensus       572 g~~i~g~~i~V~~  584 (773)
                      +..+..+-|.+-.
T Consensus       342 ~anm~hrYVElFl  354 (510)
T KOG4211|consen  342 GANMGHRYVELFL  354 (510)
T ss_pred             CcccCcceeeecc
Confidence            7777766655443

>KOG0124|consensus

Probab=99.70  E-value=7.6e-17  Score=165.35  Aligned_cols=171  Identities=21%  Similarity=0.330  Sum_probs=141.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..|+|||+.+.+.+.++.|+..|..||+|.        +|.+.-|+.||+++|||||+|+-+|.|+.|++.|||..++||
T Consensus       112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIK--------SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR  183 (544)
T KOG0124|consen  112 IMCRVYVGSISFELREDTIRRAFDPFGPIK--------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR  183 (544)
T ss_pred             HhHheeeeeeEEEechHHHHhhccCCCCcc--------eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence            468999999999999999999999999999        899999999999999999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      .|+|.+...-....       +      .+..+....                +.-..|||.-+ +| ++.+        
T Consensus       184 NiKVgrPsNmpQAQ-------p------iID~vqeeA----------------k~fnRiYVaSv-Hp-DLSe--------  224 (544)
T KOG0124|consen  184 NIKVGRPSNMPQAQ-------P------IIDMVQEEA----------------KKFNRIYVASV-HP-DLSE--------  224 (544)
T ss_pred             cccccCCCCCcccc-------h------HHHHHHHHH----------------HhhheEEeeec-CC-CccH--------
Confidence            99999654211100       0      011111110                11246788776 33 2443        


Q ss_pred             HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                       +||+..|+.||.|.+|.+.+    ..++||+||+|.+..+-..||..||-.-+||.-|+|--
T Consensus       225 -~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk  286 (544)
T KOG0124|consen  225 -TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK  286 (544)
T ss_pred             -HHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence             89999999999999999976    45689999999999999999999999999999999853

>KOG0120|consensus

Probab=99.68  E-value=2.4e-16  Score=173.73  Aligned_cols=196  Identities=27%  Similarity=0.407  Sum_probs=160.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ....+||+|||...+++++.++...||.+..        ..++.|..+|.++||||++|.++.....|+..|||+.+.++
T Consensus       288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~--------f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~  359 (500)
T KOG0120|consen  288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKA--------FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK  359 (500)
T ss_pred             ccchhhhccCcCccCHHHHHHHHHhcccchh--------heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence            6789999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|+.|..........-....               ...... +............++++.||.+|.++. +-+...+|
T Consensus       360 ~lvvq~A~~g~~~~~~~~~~~~---------------~~~~~i-~~~~~q~~g~~t~Vl~L~n~Vt~deLk-dd~EyeeI  422 (500)
T KOG0120|consen  360 KLVVQRAIVGASNANVNFNISQ---------------SQVPGI-PLLMTQMAGIPTEVLCLTNVVTPDELK-DDEEYEEI  422 (500)
T ss_pred             eeEeehhhccchhccccCCccc---------------cccccc-hhhhcccCCCcchhhhhhhcCCHHHhc-chHHHHHH
Confidence            9999998743222100000000               000000 000011224567899999999999988 55778899


Q ss_pred             HHHHHHHhhccCCEEEEEeeCC-------CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160         374 QQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  434 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~-------~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~  434 (773)
                      .++++..|++||.|..|.++..       ...|.+||+|.+.++|++|...|+|+.|+||.|.+.|++
T Consensus       423 lEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd  490 (500)
T KOG0120|consen  423 LEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD  490 (500)
T ss_pred             HHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence            9999999999999999988743       257889999999999999999999999999999999986

>KOG0109|consensus

Probab=99.68  E-value=1.6e-16  Score=159.33  Aligned_cols=147  Identities=23%  Similarity=0.297  Sum_probs=129.7

Q ss_pred             EEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEE
Q psy2160         351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA  430 (773)
Q Consensus       351 ~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v  430 (773)
                      -+||.||+....  +         .+|+.+|.+||.|..|.|.    +.++||+.++...|..||..|||..+.|..|.|
T Consensus         4 KLFIGNLp~~~~--~---------~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInV   68 (346)
T KOG0109|consen    4 KLFIGNLPREAT--E---------QELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV   68 (346)
T ss_pred             chhccCCCcccc--h---------HHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEE
Confidence            389999954433  2         7899999999999999887    678999999999999999999999999999999


Q ss_pred             EecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCC
Q psy2160         431 ETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPL  510 (773)
Q Consensus       431 ~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~  510 (773)
                      +-...+                                                            ....++|+|+||.+
T Consensus        69 eaSksK------------------------------------------------------------sk~stkl~vgNis~   88 (346)
T KOG0109|consen   69 EASKSK------------------------------------------------------------SKASTKLHVGNISP   88 (346)
T ss_pred             Eecccc------------------------------------------------------------CCCccccccCCCCc
Confidence            753221                                                            23578999999999


Q ss_pred             CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160         511 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT  588 (773)
Q Consensus       511 ~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~  588 (773)
                      .+|.++|+..|++||.+.        .|.|+        ++|+||.|...++|..||+.|||++|.|++|+|+.+...
T Consensus        89 tctn~ElRa~fe~ygpvi--------ecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr  150 (346)
T KOG0109|consen   89 TCTNQELRAKFEKYGPVI--------ECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR  150 (346)
T ss_pred             cccCHHHhhhhcccCCce--------eeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence            999999999999999998        58887        569999999999999999999999999999999987643

>KOG0146|consensus

Probab=99.62  E-value=5e-15  Score=146.68  Aligned_cols=203  Identities=16%  Similarity=0.294  Sum_probs=143.4

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec-C
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-G  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~-g  577 (773)
                      ..+.|||+-|...-.+++++.+|..||.|.        .|.+.+.+. |.++|||||.|.+.-+|+.||..|||..-. |
T Consensus        18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~--------e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG   88 (371)
T KOG0146|consen   18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIE--------ECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG   88 (371)
T ss_pred             cchhhhhhhhcccccHHHHHHHhcccCCcc--------eeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence            457899999999999999999999999999        699999987 899999999999999999999999998654 4


Q ss_pred             --eEEEEEEccccccC------------CcCCCC-----------------------------CCchhh-hHHHHHHHHH
Q psy2160         578 --KKIKVERAKFTMKG------------EAYDPK-----------------------------LKPKKK-RKKDLEKLKK  613 (773)
Q Consensus       578 --~~i~V~~a~~~~~~------------~~~~~~-----------------------------~~~~~~-k~~~~~~~~~  613 (773)
                        ..|.|.+|.-....            .-+.|.                             +.+... -.-.+.....
T Consensus        89 ASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA  168 (371)
T KOG0146|consen   89 ASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAA  168 (371)
T ss_pred             CccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHH
Confidence              57889888633100            001111                             000000 0000000000


Q ss_pred             Hh------hhccC--------------------------C---------------------------CCcc---------
Q psy2160         614 AQ------EKLFD--------------------------W---------------------------RPDK---------  625 (773)
Q Consensus       614 ~~------~~~~~--------------------------~---------------------------~~~~---------  625 (773)
                      ..      ..+..                          .                           .+..         
T Consensus       169 ~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~  248 (371)
T KOG0146|consen  169 LNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYA  248 (371)
T ss_pred             HhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhh
Confidence            00      00000                          0                           0000         


Q ss_pred             -------------------c---------cCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEe
Q psy2160         626 -------------------M---------RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL  677 (773)
Q Consensus       626 -------------------~---------~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i  677 (773)
                                         +         .....+..|+|+|.+||-  ++-+         .+|...|-+||.|.+.++
T Consensus       249 g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQ--EFgD---------aEliQmF~PFGhivSaKV  317 (371)
T KOG0146|consen  249 GVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQ--EFGD---------AELIQMFLPFGHIVSAKV  317 (371)
T ss_pred             hHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCch--hhcc---------HHHHHHhccccceeeeee
Confidence                               0         000114589999999954  4665         789999999999997655


Q ss_pred             c--C--CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         678 H--D--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       678 ~--~--~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      +  +  +.++.|+||.|.++.+|..||.+|||..++.++|+|..-++|
T Consensus       318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk  365 (371)
T KOG0146|consen  318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK  365 (371)
T ss_pred             eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence            4  3  778899999999999999999999999999999999885544

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.56  E-value=1.6e-14  Score=137.74  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=77.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+.|..||+++|||||+|.+.++|+.||+.||+..|.|+
T Consensus        33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr  104 (144)
T PLN03134         33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVD--------AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR  104 (144)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            6789999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.++..
T Consensus       105 ~l~V~~a~~  113 (144)
T PLN03134        105 HIRVNPAND  113 (144)
T ss_pred             EEEEEeCCc
Confidence            999998763

>KOG4205|consensus

Probab=99.55  E-value=1.7e-14  Score=152.25  Aligned_cols=171  Identities=26%  Similarity=0.403  Sum_probs=144.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||++|+.++|++.|++.|+.||.|..        +.+++|+.||+++||+||+|.+++.+..+|. ..-..|.|+
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d--------~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr   75 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD--------CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR   75 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcccCceee--------EEEeccCCCCCcccccceecCCCcchheeec-ccccccCCc
Confidence            5699999999999999999999999999998        9999999999999999999999999998886 444557777


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|.+..|....  .                                                    .....         
T Consensus        76 ~ve~k~av~r~--~----------------------------------------------------~~~~~---------   92 (311)
T KOG4205|consen   76 SVEPKRAVSRE--D----------------------------------------------------QTKVG---------   92 (311)
T ss_pred             cccceeccCcc--c----------------------------------------------------ccccc---------
Confidence            77775543100  0                                                    00000         


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                                           .+                                                         
T Consensus        93 ---------------------~~---------------------------------------------------------   94 (311)
T KOG4205|consen   93 ---------------------RH---------------------------------------------------------   94 (311)
T ss_pred             ---------------------cc---------------------------------------------------------
Confidence                                 00                                                         


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                                  .....|||++||.++++++|+++|.+||.|.     
T Consensus        95 --------------------------------------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~-----  125 (311)
T KOG4205|consen   95 --------------------------------------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA-----  125 (311)
T ss_pred             --------------------------------------------cceeEEEecCcCCCCchHHHhhhhhccceeE-----
Confidence                                                        0135799999999999999999999999888     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                         .+-++.|..+.+++||+||+|.+++++.+++ ...-+.|.|+.+.|..|..
T Consensus       126 ---~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p  175 (311)
T KOG4205|consen  126 ---DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP  175 (311)
T ss_pred             ---eeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence               7899999999999999999999999999998 5888999999999999984

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.54  E-value=3.7e-14  Score=135.28  Aligned_cols=82  Identities=22%  Similarity=0.349  Sum_probs=78.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|+.|..+|+++|||||+|.+.++|+.||+.||+..|.|
T Consensus        32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G  103 (144)
T PLN03134         32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVV--------DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG  103 (144)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            4578999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.++..
T Consensus       104 r~l~V~~a~~  113 (144)
T PLN03134        104 RHIRVNPAND  113 (144)
T ss_pred             EEEEEEeCCc
Confidence            9999999873

>KOG4206|consensus

Probab=99.52  E-value=2e-13  Score=134.13  Aligned_cols=196  Identities=17%  Similarity=0.276  Sum_probs=137.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHH----HHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVE----VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~----~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ++.+|||.||+..+..++|+.    +|++||.|.        .|....-   .+.+|-|||.|.+.+.|-.|+..|+|..
T Consensus         8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il--------dI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfp   76 (221)
T KOG4206|consen    8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL--------DISAFKT---PKMRGQAFVVFKETEAASAALRALQGFP   76 (221)
T ss_pred             CCceEeehhccccccHHHHHHHHHHHHHhhCCeE--------EEEecCC---CCccCceEEEecChhHHHHHHHHhcCCc
Confidence            455999999999999999888    999999997        5665533   5789999999999999999999999999


Q ss_pred             ecCeEEEEEEccccccCC-----cCCCCCCchhhhHHHHHHHH-HHhhhccCC--CCcccc----CCCCCCCcEEEEecC
Q psy2160         575 IRGKKIKVERAKFTMKGE-----AYDPKLKPKKKRKKDLEKLK-KAQEKLFDW--RPDKMR----GERSKNESVIIVKNL  642 (773)
Q Consensus       575 i~g~~i~V~~a~~~~~~~-----~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~--~~~~~~----~~~~~~~~~l~ikNl  642 (773)
                      |.|++|+|++|+.....-     .+....++...  ....+.. .........  ......    .....+..++++.|+
T Consensus        77 FygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~--~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni  154 (221)
T KOG4206|consen   77 FYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKING--EILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI  154 (221)
T ss_pred             ccCchhheecccCccchhhccCceeccccCcccc--ccccccCCcccccccccccccccCCCCccccCCCCceEEEEecC
Confidence            999999999998543211     11111111000  0000000 000000000  000000    112456789999999


Q ss_pred             CCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEec
Q psy2160         643 FDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWD  719 (773)
Q Consensus       643 ~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~d  719 (773)
                      |...+  .         +.+...|.+|+....|.+.+.. .|+|||+|.+...|..|...|.|..+. ...+.+.|.+
T Consensus       155 P~es~--~---------e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~  220 (221)
T KOG4206|consen  155 PSESE--S---------EMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK  220 (221)
T ss_pred             Ccchh--H---------HHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence            87633  2         6777788888888888665532 489999999999999999999999887 8888887743

>KOG1365|consensus

Probab=99.50  E-value=6.7e-13  Score=137.72  Aligned_cols=294  Identities=17%  Similarity=0.154  Sum_probs=196.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .++-|-.++||...+..+|..+|+-.-...-.       +.|..+.. |+..|.|+|.|.+.|.-++|++ -+...+.++
T Consensus        59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg-------~aKOG~~q-grRnge~lvrf~d~e~Rdlalk-Rhkhh~g~r  129 (508)
T KOG1365|consen   59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGG-------RALCLNAQ-GRRNGEALVRFVDPEGRDLALK-RHKHHMGTR  129 (508)
T ss_pred             cceEEEecCCCCCcccCCHHHHHhhhhccccc-------eeeeehhh-hccccceEEEecCchhhhhhhH-hhhhhccCC
Confidence            77888899999999999999999865444332       56777777 9999999999999999999998 466667889


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCC-CcEEEEecCCCccccchhhHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKN-ESVIIVKNLFDPALFDKDVTLILE  372 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~-~~~v~l~Nl~~p~~~~~d~~~~~e  372 (773)
                      .|.|-.|....--. +.                        ...........++. .-.|-+++|  |-+...       
T Consensus       130 yievYka~ge~f~~-ia------------------------gg~s~e~~~flsk~~qvivRmRGL--Pfdat~-------  175 (508)
T KOG1365|consen  130 YIEVYKATGEEFLK-IA------------------------GGTSNEAAPFLSKENQVIVRMRGL--PFDATA-------  175 (508)
T ss_pred             ceeeeccCchhheE-ec------------------------CCccccCCCCCCcccceEEEecCC--CCCcch-------
Confidence            99996655221000 00                        00000011111212 234667888  333222       


Q ss_pred             HHHHHHHHhhccC----C---EEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhH
Q psy2160         373 YQQDLREECSKCG----H---VKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA  445 (773)
Q Consensus       373 i~edL~e~f~k~G----~---V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~  445 (773)
                        .++.++|....    .   |.-|...|+++.|-|||.|..+++|+.|+.. |...++.|-|.+...          +.
T Consensus       176 --~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS----------Ta  242 (508)
T KOG1365|consen  176 --LDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS----------TA  242 (508)
T ss_pred             --HHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH----------hH
Confidence              78999996422    2   2234445788999999999999999999985 666777777666321          22


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Q psy2160         446 EEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG  525 (773)
Q Consensus       446 ~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G  525 (773)
                      .+-++-+.+...   .      +.....+.+..|.. +.       .......+..+|.+++||+..|.++|..+|..|-
T Consensus       243 aEvqqvlnr~~s---~------pLi~~~~sp~~p~~-p~-------~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa  305 (508)
T KOG1365|consen  243 AEVQQVLNREVS---E------PLIPGLTSPLLPGG-PA-------RLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFA  305 (508)
T ss_pred             HHHHHHHHhhcc---c------cccCCCCCCCCCCC-cc-------ccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHh
Confidence            222222211110   0      00000111111211 00       0112234468999999999999999999999886


Q ss_pred             cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160         526 LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       526 ~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~  586 (773)
                      .-..     -..|+|..|.+ |++.|.|||+|.+.++|..|....+.+...++.|.|-.+.
T Consensus       306 ~~i~-----f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S  360 (508)
T KOG1365|consen  306 TDIR-----FQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS  360 (508)
T ss_pred             hhcc-----cceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence            5331     01488999987 9999999999999999999999999988889999988765

>KOG4206|consensus

Probab=99.50  E-value=3.2e-13  Score=132.79  Aligned_cols=194  Identities=19%  Similarity=0.335  Sum_probs=132.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHH----HHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVE----VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~----~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      .+.+|||.||+..+..++|+.    +|+.||.|..        |...+   |.+.+|-|||.|.+.+.|..|+..|+|..
T Consensus         8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild--------I~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfp   76 (221)
T KOG4206|consen    8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD--------ISAFK---TPKMRGQAFVVFKETEAASAALRALQGFP   76 (221)
T ss_pred             CCceEeehhccccccHHHHHHHHHHHHHhhCCeEE--------EEecC---CCCccCceEEEecChhHHHHHHHHhcCCc
Confidence            344999999999999999988    9999999987        66664   48899999999999999999999999999


Q ss_pred             ecCeEEEEEeecccccCCCCCC-CCchhhhhHHHHHHHHHHHhhh-cc---C-------CCCccCCCCCCCCcEEEEecC
Q psy2160         290 IRGKKIKVERAKFTMKGEAYDP-KLKPKKKRKKDLEKLKKAQEKL-FD---W-------RPDKMRGERSKNESVIIVKNL  357 (773)
Q Consensus       290 l~g~~I~V~~A~~~~k~~~~~p-~~~~~~~~~k~~~~~~k~~~k~-~~---~-------~~~~~~~~~~~~~~~v~l~Nl  357 (773)
                      |.|++|+|++|+....-....+ .... +.++...+++....+.. ..   .       .+... ........++++.|+
T Consensus        77 FygK~mriqyA~s~sdii~~~~~~~v~-~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~-~~~~ppn~ilf~~ni  154 (221)
T KOG4206|consen   77 FYGKPMRIQYAKSDSDIIAQAPGTFVE-KEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFL-AQMAPPNNILFLTNI  154 (221)
T ss_pred             ccCchhheecccCccchhhccCceecc-ccCccccccccccCCcccccccccccccccCCCCcc-ccCCCCceEEEEecC
Confidence            9999999999985432221100 0000 00000000000000000 00   0       00000 112456778999999


Q ss_pred             CCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEe
Q psy2160         358 FDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAET  432 (773)
Q Consensus       358 ~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~  432 (773)
                      +  .+.+.         +-+...|..|+....|++.... .++|||+|.+...|..|...+.|..+. ...+.+.+
T Consensus       155 P--~es~~---------e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~  218 (221)
T KOG4206|consen  155 P--SESES---------EMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF  218 (221)
T ss_pred             C--cchhH---------HHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence            4  44332         5566777777777777766543 789999999999999999999887776 56666544

>PF00076 RRM_1: RNA recognition motif

Probab=99.45  E-value=2.8e-13  Score=112.38  Aligned_cols=70  Identities=34%  Similarity=0.574  Sum_probs=66.9

Q ss_pred             EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      |||+|||.++|+++|+++|+.||.|..        +++..+.. +.++|+|||+|.+.++|..|++.|||..+.|++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~-~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIES--------IKVMRNSS-GKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEE--------EEEEEETT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhccc--------cccccccc-ccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            799999999999999999999999988        99999854 99999999999999999999999999999999986

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0105|consensus

Probab=99.44  E-value=1.8e-12  Score=122.35  Aligned_cols=171  Identities=20%  Similarity=0.252  Sum_probs=127.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++.+.+|.++|.+||.|.        .|.|-.-+   ...+||||+|+++-+|..||..-+|..+.|.
T Consensus         5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~--------~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~   73 (241)
T KOG0105|consen    5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIR--------EIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC   73 (241)
T ss_pred             ccceEEecCCCcchhhccHHHHHhhhcceE--------EEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcc
Confidence            468999999999999999999999999998        57765443   2578999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcccc-CCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMR-GERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      .|+|+++.-.-....--..-.               .-.-..|...... +....+...|+|..||....          
T Consensus        74 rLRVEfprggr~s~~~~G~y~---------------gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgS----------  128 (241)
T KOG0105|consen   74 RLRVEFPRGGRSSSDRRGSYS---------------GGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGS----------  128 (241)
T ss_pred             eEEEEeccCCCcccccccccC---------------CCCCCCCCCCcccCCcccccceeEEEecCCCCCc----------
Confidence            999999873211100000000               0000011111111 12234467899999987765          


Q ss_pred             HHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC
Q psy2160         658 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG  709 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~  709 (773)
                       .+||++++.+-|.|.-..+++   .|++.|.|...|+-.-|+..|....|.
T Consensus       129 -WQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~  176 (241)
T KOG0105|consen  129 -WQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFR  176 (241)
T ss_pred             -hHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhcccccc
Confidence             389999999999998776665   379999999999999999999988874

>PF00076 RRM_1: RNA recognition motif

Probab=99.43  E-value=5.2e-13  Score=110.75  Aligned_cols=70  Identities=34%  Similarity=0.579  Sum_probs=66.5

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      |||+|||.++|+++|+++|+.||.|.        .+.+..+ .++.++|+|||+|.+.++|..|++.|||..+.|++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~--------~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIE--------SIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEE--------EEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcc--------ccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            79999999999999999999999998        7999998 4588999999999999999999999999999999986

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0105|consensus

Probab=99.41  E-value=3.7e-12  Score=120.31  Aligned_cols=171  Identities=21%  Similarity=0.273  Sum_probs=125.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++.+.+|.++|.+||.|..        |-|-..   -..-+||||+|+++.+|+-||.--||+.+.|.
T Consensus         5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~--------ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~   73 (241)
T KOG0105|consen    5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIRE--------IELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC   73 (241)
T ss_pred             ccceEEecCCCcchhhccHHHHHhhhcceEE--------EEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcc
Confidence            5689999999999999999999999999997        776433   23457999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCC-CCCCCcEEEEecCCCccccchhhHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGE-RSKNESVIIVKNLFDPALFDKDVTLILE  372 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~-~~~~~~~v~l~Nl~~p~~~~~d~~~~~e  372 (773)
                      .|+|+++.-.-.+.  +.--..             ..-.--+|.....++. .......|+|.+|+....+         
T Consensus        74 rLRVEfprggr~s~--~~~G~y-------------~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSW---------  129 (241)
T KOG0105|consen   74 RLRVEFPRGGRSSS--DRRGSY-------------SGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSW---------  129 (241)
T ss_pred             eEEEEeccCCCccc--cccccc-------------CCCCCCCCCCCcccCCcccccceeEEEecCCCCCch---------
Confidence            99999987421110  000000             0000001222222222 2234556999999655554         


Q ss_pred             HHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160         373 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG  424 (773)
Q Consensus       373 i~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~  424 (773)
                        +||++++.+.|.|--..++   ..|++.|.|...++..-|+..|....|.
T Consensus       130 --QDLKDHmReaGdvCfadv~---rDg~GvV~~~r~eDMkYAvr~ld~~~~~  176 (241)
T KOG0105|consen  130 --QDLKDHMREAGDVCFADVQ---RDGVGVVEYLRKEDMKYAVRKLDDQKFR  176 (241)
T ss_pred             --HHHHHHHHhhCCeeeeeee---cccceeeeeeehhhHHHHHHhhcccccc
Confidence              7899999999998765554   3679999999999999999999877664

>KOG0121|consensus

Probab=99.40  E-value=5.2e-13  Score=118.93  Aligned_cols=78  Identities=27%  Similarity=0.484  Sum_probs=75.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+||+..+||+.|.++|++||.|..        |.|=.|+.|..+.|||||+|.+.++|..|++.++++.+..+
T Consensus        35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irr--------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr  106 (153)
T KOG0121|consen   35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRR--------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR  106 (153)
T ss_pred             hcceEEEeeeeeeecHHHHHHHHHhccchhe--------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence            7799999999999999999999999999998        99999999899999999999999999999999999999999


Q ss_pred             EEEEEe
Q psy2160         294 KIKVER  299 (773)
Q Consensus       294 ~I~V~~  299 (773)
                      +|+|.+
T Consensus       107 ~ir~D~  112 (153)
T KOG0121|consen  107 PIRIDW  112 (153)
T ss_pred             ceeeec
Confidence            999954

>KOG0122|consensus

Probab=99.40  E-value=9.9e-13  Score=129.75  Aligned_cols=83  Identities=25%  Similarity=0.376  Sum_probs=79.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|.|.|||.++++.+|.++|.+||.|.        +|.|.+|..||.++|||||+|.+.++|.+||..|||+-+.
T Consensus       186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~--------rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd  257 (270)
T KOG0122|consen  186 RDDEATVRVTNLSEDMREDDLEELFRPFGPIT--------RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD  257 (270)
T ss_pred             CCccceeEEecCccccChhHHHHHhhccCccc--------eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence            34678999999999999999999999999999        8999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      .-.|+|+|++.
T Consensus       258 ~LILrvEwskP  268 (270)
T KOG0122|consen  258 NLILRVEWSKP  268 (270)
T ss_pred             eEEEEEEecCC
Confidence            99999999984

>KOG0122|consensus

Probab=99.39  E-value=9.6e-13  Score=129.83  Aligned_cols=81  Identities=26%  Similarity=0.381  Sum_probs=78.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      +.++|-|+|||.++++++|+++|.+||.|.+        |.|.+|+.||.++|||||.|.+.++|.+||..|||.-+..-
T Consensus       188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r--------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L  259 (270)
T KOG0122|consen  188 DEATVRVTNLSEDMREDDLEELFRPFGPITR--------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL  259 (270)
T ss_pred             ccceeEEecCccccChhHHHHHhhccCccce--------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE
Confidence            7899999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      -|+|+++++
T Consensus       260 ILrvEwskP  268 (270)
T KOG0122|consen  260 ILRVEWSKP  268 (270)
T ss_pred             EEEEEecCC
Confidence            999999875

>KOG4205|consensus

Probab=99.39  E-value=1.2e-12  Score=138.28  Aligned_cols=169  Identities=21%  Similarity=0.307  Sum_probs=136.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..+.|||++|++++|++.|+++|++||.|.        .|.+++|+.+|+++||+||+|.+++.+..++. ..-+.|.|+
T Consensus         5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~--------d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr   75 (311)
T KOG4205|consen    5 ESGKLFIGGLSWETTEESLREYFSQFGEVT--------DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR   75 (311)
T ss_pred             CCcceeecCcCccccHHHHHHHhcccCcee--------eEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCc
Confidence            468999999999999999999999999999        79999999999999999999999999999984 556778999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      .|.+..|.......                                  ........+.|+|..++..  +.+        
T Consensus        76 ~ve~k~av~r~~~~----------------------------------~~~~~~~tkkiFvGG~~~~--~~e--------  111 (311)
T KOG4205|consen   76 SVEPKRAVSREDQT----------------------------------KVGRHLRTKKIFVGGLPPD--TTE--------  111 (311)
T ss_pred             cccceeccCccccc----------------------------------ccccccceeEEEecCcCCC--Cch--------
Confidence            99999887321000                                  0000113578999998655  433        


Q ss_pred             HHHHHHHHhcCCceeEEEe-cC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         659 QQDLREECSKCGHVKKVVL-HD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i-~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                       +++++.|.+||.|..+.+ ++   ..++|++||.|.+.++..+++.. .-..|.|+.+.|--+-++.
T Consensus       112 -~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~  177 (311)
T KOG4205|consen  112 -EDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKE  177 (311)
T ss_pred             -HHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchh
Confidence             899999999998887644 33   56789999999999999887664 7888999999997655444

>KOG1456|consensus

Probab=99.37  E-value=1e-10  Score=121.38  Aligned_cols=302  Identities=18%  Similarity=0.217  Sum_probs=196.7

Q ss_pred             CccEEEEcCC--CCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNL--PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nL--P~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      .|.-|.++=|  -+.+|.+-|..+...+|.|.+        |.|++. + |-   .|+|+|.+.+.|++|-..|||..|.
T Consensus       119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR--------IvIfkk-n-gV---QAmVEFdsv~~AqrAk~alNGADIY  185 (494)
T KOG1456|consen  119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLR--------IVIFKK-N-GV---QAMVEFDSVEVAQRAKAALNGADIY  185 (494)
T ss_pred             CCeEEEEEeecCccccchhhhhhhcCCCCceEE--------EEEEec-c-ce---eeEEeechhHHHHHHHhhccccccc
Confidence            5555555544  467999999999999999998        888765 2 44   6999999999999999999999985


Q ss_pred             -C-eEEEEEeecccccC------C-----------CCCCCCchhhhhHHHHHHHHHHHhhhccCCC-------------C
Q psy2160         292 -G-KKIKVERAKFTMKG------E-----------AYDPKLKPKKKRKKDLEKLKKAQEKLFDWRP-------------D  339 (773)
Q Consensus       292 -g-~~I~V~~A~~~~k~------~-----------~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~-------------~  339 (773)
                       | .+|+|++|+...-.      +           .++|...+-. +...   ...+......|+.             .
T Consensus       186 sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~-r~~~---p~~~~~~pss~~G~h~~y~sg~~~~p~  261 (494)
T KOG1456|consen  186 SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYD-RQRQ---PAPLGYHPSSRGGGHSGYYSGDRHGPP  261 (494)
T ss_pred             ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCc-cccC---CCccCCChhhcCCCCCCCcccccCCCC
Confidence             4 79999999863111      0           0122211100 0000   0000001111211             0


Q ss_pred             cc------------CC----CCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEE
Q psy2160         340 KM------------RG----ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI  403 (773)
Q Consensus       340 ~~------------~~----~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV  403 (773)
                      ..            ++    .....+.+++|.+|-.. .+.         .+.|.++|.-||.|.+|.+... ..|.|.|
T Consensus       262 ~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~-k~N---------~drlFNl~ClYGNV~rvkFmkT-k~gtamV  330 (494)
T KOG1456|consen  262 HPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHG-KMN---------CDRLFNLFCLYGNVERVKFMKT-KPGTAMV  330 (494)
T ss_pred             CCCCCCCccccccCCCCCCCCCCCCCcEEEEEecccc-ccc---------hhhhhhhhhhcCceeeEEEeec-ccceeEE
Confidence            00            00    11234678899998332 222         2679999999999999987754 4899999


Q ss_pred             EecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC-CCCCCC
Q psy2160         404 FFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEA-YDPKLK  482 (773)
Q Consensus       404 ~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~-~~p~~~  482 (773)
                      ++.+..+.++|+..||+..+-|.+|.+......  +....            ..|+..           .|++ +.....
T Consensus       331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~--~v~~~------------~pflLp-----------DgSpSfKdys~  385 (494)
T KOG1456|consen  331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN--FVSPV------------QPFLLP-----------DGSPSFKDYSG  385 (494)
T ss_pred             EcCcHHHHHHHHHHhccCccccceEEEeecccc--ccccC------------CceecC-----------CCCcchhhccc
Confidence            999999999999999999999999988764321  11000            001111           1111 000011


Q ss_pred             chHHh---hhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCC
Q psy2160         483 PKKKR---KKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK  559 (773)
Q Consensus       483 ~~~~r---~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~  559 (773)
                      +++.|   .....+.....+.+.|+.-|.|..+|++.|..+|...+..-.       +|+|+.-+.  ....-|+++|++
T Consensus       386 SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~-------svkvFp~ks--erSssGllEfe~  456 (494)
T KOG1456|consen  386 SKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPT-------SVKVFPLKS--ERSSSGLLEFEN  456 (494)
T ss_pred             ccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcc-------eEEeecccc--cccccceeeeeh
Confidence            12222   111112233567789999999999999999999997776531       577776552  235578999999


Q ss_pred             hHHHHHHHHHhCCceecC
Q psy2160         560 KESVDLALSILDGYEIRG  577 (773)
Q Consensus       560 ~e~A~~Ai~~lng~~i~g  577 (773)
                      .++|..||..||...|.+
T Consensus       457 ~s~Aveal~~~NH~pi~~  474 (494)
T KOG1456|consen  457 KSDAVEALMKLNHYPIEG  474 (494)
T ss_pred             HHHHHHHHHHhccccccC
Confidence            999999999999999985

>KOG0126|consensus

Probab=99.36  E-value=9.4e-14  Score=130.83  Aligned_cols=89  Identities=29%  Similarity=0.497  Sum_probs=82.3

Q ss_pred             CCCCccCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHH
Q psy2160         205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSI  284 (773)
Q Consensus       205 ~~~~~~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~  284 (773)
                      ..+|.+-=..+.-|||+|||++.||.+|.-+||.||.|..        |.|++|+.||+++||||++|.+..+..+|+..
T Consensus        25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vd--------inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN   96 (219)
T KOG0126|consen   25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVD--------INLIRDKKTGKSKGFAFLCYEDQRSTILAVDN   96 (219)
T ss_pred             ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEE--------EEEEecCCCCcccceEEEEecCccceEEEEec
Confidence            3468654448899999999999999999999999999998        99999999999999999999999999999999


Q ss_pred             cCCceecCeEEEEEeec
Q psy2160         285 LDGYEIRGKKIKVERAK  301 (773)
Q Consensus       285 lng~~l~g~~I~V~~A~  301 (773)
                      |||..|.||.|+|....
T Consensus        97 ~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   97 LNGIKILGRTIRVDHVS  113 (219)
T ss_pred             cCCceecceeEEeeecc
Confidence            99999999999997643

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.35  E-value=3e-12  Score=106.61  Aligned_cols=70  Identities=33%  Similarity=0.570  Sum_probs=65.3

Q ss_pred             EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      |||+|||+++++++|+++|+.||.|..        |++..+++ |.++|+|||+|.+.++|..|++.+++..|.|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~--------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEK--------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEE--------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcce--------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            799999999999999999999999987        99999988 99999999999999999999999999999999875

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0126|consensus

Probab=99.32  E-value=2.5e-13  Score=127.93  Aligned_cols=80  Identities=30%  Similarity=0.513  Sum_probs=76.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      .+..|||+|||.+.|+.+|.-+|++||.|.        +|.|++|..||+++||||++|.+..+...|+..|||..|.||
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~v--------dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR  105 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYGEIV--------DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR  105 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccCceE--------EEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence            467999999999999999999999999999        899999999999999999999999999999999999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      .|+|.-..
T Consensus       106 tirVDHv~  113 (219)
T KOG0126|consen  106 TIRVDHVS  113 (219)
T ss_pred             eEEeeecc
Confidence            99998654

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.31  E-value=6.3e-12  Score=104.66  Aligned_cols=70  Identities=33%  Similarity=0.570  Sum_probs=65.0

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      |||+|||+++|+++|+++|+.||.|.        .+++..+.. |.++|+|||+|.++++|..|++.++|..|+|+.|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~--------~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVE--------KVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEE--------EEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcc--------eEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            79999999999999999999999998        799999987 89999999999999999999999999999999885

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG1457|consensus

Probab=99.31  E-value=3e-11  Score=117.48  Aligned_cols=191  Identities=21%  Similarity=0.236  Sum_probs=127.6

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEE-EecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec-
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL-YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-  576 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l-~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~-  576 (773)
                      .-++|||.+||.++-..+|+.+|..|-.-+        .+.| +.+......+-+|||+|.+..+|..|+.+|||..|. 
T Consensus        33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYE--------gslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp  104 (284)
T KOG1457|consen   33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYE--------GSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP  104 (284)
T ss_pred             ccceeeeccCCcccCHHHHHHHhccCCCcc--------ceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence            468999999999999999999999997766        3444 334332345679999999999999999999999997 


Q ss_pred             --CeEEEEEEccccccCCc--C--CCCC-------Cc-hhhh-HHHHHHHHHH----------------------hhhc-
Q psy2160         577 --GKKIKVERAKFTMKGEA--Y--DPKL-------KP-KKKR-KKDLEKLKKA----------------------QEKL-  618 (773)
Q Consensus       577 --g~~i~V~~a~~~~~~~~--~--~~~~-------~~-~~~k-~~~~~~~~~~----------------------~~~~-  618 (773)
                        +..|++++|+...+...  .  .|..       .+ ...+ ...+......                      .+.+ 
T Consensus       105 E~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~  184 (284)
T KOG1457|consen  105 ETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALS  184 (284)
T ss_pred             ccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhh
Confidence              78999999986533110  0  0000       00 0000 0000000000                      0000 


Q ss_pred             --cCCCCcccc--------CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEE
Q psy2160         619 --FDWRPDKMR--------GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI  688 (773)
Q Consensus       619 --~~~~~~~~~--------~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV  688 (773)
                        ..|.+....        ......-.+|+|-||...  +++         ++|+..|+.|-....+.|..+...-+|||
T Consensus       185 a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~--~~e---------d~l~~~~~~~~gf~~l~~~~~~g~~vaf~  253 (284)
T KOG1457|consen  185 APDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPN--CTE---------DELKQLLSRYPGFHILKIRARGGMPVAFA  253 (284)
T ss_pred             hhhhcCCcccchhhhhhcccccchhhhhHhhhccCCC--CCH---------HHHHHHHHhCCCceEEEEecCCCcceEee
Confidence              011110000        001112348999999433  443         89999999998888788877776679999


Q ss_pred             EecCHHHHHHHHHHhCCcee
Q psy2160         689 FFKEPEAADACRELLNGRWF  708 (773)
Q Consensus       689 ~F~~~e~A~~Ai~~lnGr~f  708 (773)
                      .|.+.+.|..|+..|.|..+
T Consensus       254 ~~~~~~~at~am~~lqg~~~  273 (284)
T KOG1457|consen  254 DFEEIEQATDAMNHLQGNLL  273 (284)
T ss_pred             cHHHHHHHHHHHHHhhccee
Confidence            99999999999999999877

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.30  E-value=7.8e-12  Score=127.58  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=70.0

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      .++|||+|||+.+|+++|+++|+.||.|..        |.|+++..   .+|||||+|.++++|..||. |||..|.|+.
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~--------V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~   71 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEY--------VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQS   71 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCce
Confidence            579999999999999999999999999998        99998854   47999999999999999995 9999999999


Q ss_pred             EEEEeec
Q psy2160         295 IKVERAK  301 (773)
Q Consensus       295 I~V~~A~  301 (773)
                      |.|.++.
T Consensus        72 V~Vt~a~   78 (260)
T PLN03120         72 VTITPAE   78 (260)
T ss_pred             EEEEecc
Confidence            9998876

>KOG1457|consensus

Probab=99.29  E-value=4.9e-11  Score=116.03  Aligned_cols=82  Identities=23%  Similarity=0.301  Sum_probs=65.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEE-EecCCCCCcceEEEEEecChHHHHHHHHHcCCceec-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL-YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l-~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~-  291 (773)
                      .-++|||+|||.++...||..+|..|---..        ..| +.++...-.+-+|||+|.+..+|..|+.+|||..|. 
T Consensus        33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEg--------slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp  104 (284)
T KOG1457|consen   33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEG--------SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP  104 (284)
T ss_pred             ccceeeeccCCcccCHHHHHHHhccCCCccc--------eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence            4689999999999999999999998855544        233 223321234579999999999999999999999985 


Q ss_pred             --CeEEEEEeeccc
Q psy2160         292 --GKKIKVERAKFT  303 (773)
Q Consensus       292 --g~~I~V~~A~~~  303 (773)
                        +..|+|+.|+..
T Consensus       105 E~~stLhiElAKSN  118 (284)
T KOG1457|consen  105 ETGSTLHIELAKSN  118 (284)
T ss_pred             ccCceeEeeehhcC
Confidence              789999998843

>KOG4211|consensus

Probab=99.28  E-value=3.9e-11  Score=129.34  Aligned_cols=165  Identities=22%  Similarity=0.298  Sum_probs=126.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ....|.+++||+++|+++|.++|+.|++-.         +.+.+.  +|+..|.|||+|.+.+++.+|++ .+-..+..+
T Consensus         9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~---------~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R   76 (510)
T KOG4211|consen    9 TAFEVRLRGLPWSATEKEILDFFSNCGIEN---------LEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHR   76 (510)
T ss_pred             cceEEEecCCCccccHHHHHHHHhcCceeE---------EEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence            456788999999999999999999998753         444443  59999999999999999999995 788888899


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      -|.|-.+.....                             +|.-............+|-|+.||..  ++         
T Consensus        77 YIEVf~~~~~e~-----------------------------d~~~~~~g~~s~~~d~vVRLRGLPfs--ct---------  116 (510)
T KOG4211|consen   77 YIEVFTAGGAEA-----------------------------DWVMRPGGPNSSANDGVVRLRGLPFS--CT---------  116 (510)
T ss_pred             eEEEEccCCccc-----------------------------cccccCCCCCCCCCCceEEecCCCcc--Cc---------
Confidence            999998762211                             11111111111234679999999887  44         


Q ss_pred             HHHHHHHHhcCCceeE-EEe---cCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160         659 QQDLREECSKCGHVKK-VVL---HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE  716 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~-v~i---~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~  716 (773)
                      ++||.+.|+..=.|.. |.+   ++..+.|-|||+|++.+.|++|+.. |-..++-|-|+|.
T Consensus       117 e~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF  177 (510)
T KOG4211|consen  117 EEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF  177 (510)
T ss_pred             HHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence            3899999997766665 222   3467899999999999999999998 7778888888874

>KOG0106|consensus

Probab=99.28  E-value=8.2e-12  Score=124.24  Aligned_cols=161  Identities=24%  Similarity=0.318  Sum_probs=125.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ..|||++||..+.+.+|..+|..||.|.        .|.|.        .||+||.|.+.-+|..|+..||+..|.|-.+
T Consensus         2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~--------d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~   65 (216)
T KOG0106|consen    2 PRVYIGRLPYRARERDVERFFKGYGKIP--------DADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERL   65 (216)
T ss_pred             CceeecccCCccchhHHHHHHhhccccc--------cceee--------cccceeccCchhhhhcccchhcCceecceee
Confidence            4699999999999999999999999998        45554        5789999999999999999999999999889


Q ss_pred             EEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccC----CCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160         581 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFD----WRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  656 (773)
Q Consensus       581 ~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~  656 (773)
                      .|+++.......                      .....+    |...-  .......+.++|.|+..-  +.       
T Consensus        66 vve~~r~~~~~~----------------------g~~~~g~r~~~~~~~--~~p~~s~~r~~~~~~~~r--~~-------  112 (216)
T KOG0106|consen   66 VVEHARGKRRGR----------------------GRPRGGDRRSDSRRY--RPPSRTHFRLIVRNLSLR--VS-------  112 (216)
T ss_pred             eeeccccccccc----------------------CCCCCCCccchhhcc--CCcccccceeeeccchhh--hh-------
Confidence            999988432111                      000000    11110  111234578888887433  22       


Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE  716 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~  716 (773)
                        +.+|.+.|+++|.++...+    ..+.+||+|.+.++|.+|+..|+|.-+.|++|.+.
T Consensus       113 --~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~  166 (216)
T KOG0106|consen  113 --WQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE  166 (216)
T ss_pred             --HHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence              4899999999999965554    34789999999999999999999999999999993

>KOG0107|consensus

Probab=99.27  E-value=9.8e-12  Score=116.95  Aligned_cols=76  Identities=29%  Similarity=0.370  Sum_probs=70.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+|+|||+||+.++++.||..+|+.||.|..        |-|-++     +-|||||+|.++-+|..|+..|||..|.|.
T Consensus         9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--------vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~   75 (195)
T KOG0107|consen    9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGS   75 (195)
T ss_pred             CCceEEeccCCCCcchHHHHHHHHhcCccee--------EEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCc
Confidence            6899999999999999999999999999998        777754     458999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|+|+.+.-
T Consensus        76 r~rVE~S~G   84 (195)
T KOG0107|consen   76 RIRVELSTG   84 (195)
T ss_pred             eEEEEeecC
Confidence            999998763

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.25  E-value=2.4e-11  Score=124.03  Aligned_cols=76  Identities=21%  Similarity=0.265  Sum_probs=71.0

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||+.+|+++|+++|+.||.|.        +|.|+.+..   ++|||||+|.++++|..|| .|||..|.|+.
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~--------~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~   71 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIE--------YVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQS   71 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCce
Confidence            57999999999999999999999999999        899998864   4799999999999999999 59999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |.|.++..
T Consensus        72 V~Vt~a~~   79 (260)
T PLN03120         72 VTITPAED   79 (260)
T ss_pred             EEEEeccC
Confidence            99999873

>KOG0121|consensus

Probab=99.25  E-value=1.5e-11  Score=109.64  Aligned_cols=82  Identities=24%  Similarity=0.453  Sum_probs=76.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+||+.-+|+++|.++|++||.|.        +|.|=.|+.+..+=|||||+|-+.++|..|++.++|+.+.
T Consensus        33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~ir--------riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd  104 (153)
T KOG0121|consen   33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIR--------RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD  104 (153)
T ss_pred             HhhcceEEEeeeeeeecHHHHHHHHHhccchh--------eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence            44679999999999999999999999999999        7888889888888899999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      .++|++.+.-
T Consensus       105 dr~ir~D~D~  114 (153)
T KOG0121|consen  105 DRPIRIDWDA  114 (153)
T ss_pred             ccceeeeccc
Confidence            9999999853

>PLN03213 repressor of silencing 3; Provisional

Probab=99.24  E-value=1.8e-11  Score=130.60  Aligned_cols=78  Identities=15%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecCh--HHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK--ESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~--esA~~Al~~lng~~l~  291 (773)
                      ...+||||||++++|+++|..+|+.||.|..        |.|++  .||  +|||||+|...  .++.+||..|||..+.
T Consensus         9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkd--------VEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWK   76 (759)
T PLN03213          9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDA--------VEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK   76 (759)
T ss_pred             cceEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence            5699999999999999999999999999998        99994  457  99999999988  7899999999999999


Q ss_pred             CeEEEEEeeccc
Q psy2160         292 GKKIKVERAKFT  303 (773)
Q Consensus       292 g~~I~V~~A~~~  303 (773)
                      |+.|+|+.|+..
T Consensus        77 GR~LKVNKAKP~   88 (759)
T PLN03213         77 GGRLRLEKAKEH   88 (759)
T ss_pred             CceeEEeeccHH
Confidence            999999998853

>KOG0125|consensus

Probab=99.24  E-value=1.7e-11  Score=125.68  Aligned_cols=81  Identities=23%  Similarity=0.374  Sum_probs=75.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|+|+|||+...+-||+.+|.+||.|.        +|.|+.+..  .+||||||+|+++++|++|-..|||+.|.
T Consensus        93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl--------dVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VE  162 (376)
T KOG0125|consen   93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVL--------DVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVE  162 (376)
T ss_pred             CCCCceeEeecCCccccCccHHHHHHhhCcee--------eEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceee
Confidence            34568999999999999999999999999999        899999985  38999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      ||+|.|..|.-
T Consensus       163 GRkIEVn~ATa  173 (376)
T KOG0125|consen  163 GRKIEVNNATA  173 (376)
T ss_pred             ceEEEEeccch
Confidence            99999999873

>KOG0149|consensus

Probab=99.24  E-value=1.2e-11  Score=121.87  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .-|+|||+|||+.++.+.|+++|.+||.|.+        ..|+.|+.||++|||+||+|.+.++|.+|++. -.-.|.||
T Consensus        11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~e--------avvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR   81 (247)
T KOG0149|consen   11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVE--------AVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGR   81 (247)
T ss_pred             eEEEEEEcCcccccchHHHHHHHHHhCceEE--------EEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccc
Confidence            5589999999999999999999999999999        99999999999999999999999999999984 34468999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +-.|..|.+.
T Consensus        82 ~aNcnlA~lg   91 (247)
T KOG0149|consen   82 KANCNLASLG   91 (247)
T ss_pred             ccccchhhhc
Confidence            9999988763

>KOG1365|consensus

Probab=99.24  E-value=1.5e-10  Score=120.44  Aligned_cols=280  Identities=19%  Similarity=0.200  Sum_probs=173.5

Q ss_pred             CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccC----CEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160         349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG----HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG  424 (773)
Q Consensus       349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G----~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~  424 (773)
                      +.++-.+.+  |+...+         .+|..+|.-..    .+.-+....+...|.+.|+|.+++.-+.|++. |...++
T Consensus        60 ~vvvRaRgl--pwq~Sd---------~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g  127 (508)
T KOG1365|consen   60 NVVVRARGL--PWQSSD---------QDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMG  127 (508)
T ss_pred             ceEEEecCC--CCCccc---------CCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhcc
Confidence            344556677  555433         66777776532    22222223455678999999999999999885 777889


Q ss_pred             CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC-CCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160         425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEA-YDPKLKPKKKRKKDLEKLKKAQENTKV  503 (773)
Q Consensus       425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~-~~p~~~~~~~r~~~~~~~~~~~~~~~l  503 (773)
                      +|.|.+.-..+..-+.+.                              .|.. ..+.+.++             ...-.|
T Consensus       128 ~ryievYka~ge~f~~ia------------------------------gg~s~e~~~flsk-------------~~qviv  164 (508)
T KOG1365|consen  128 TRYIEVYKATGEEFLKIA------------------------------GGTSNEAAPFLSK-------------ENQVIV  164 (508)
T ss_pred             CCceeeeccCchhheEec------------------------------CCccccCCCCCCc-------------ccceEE
Confidence            999999755443321111                              1111 11112111             123568


Q ss_pred             EEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160         504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE  583 (773)
Q Consensus       504 ~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~  583 (773)
                      .+++||+++|..++.++|..--.|.-    +.-.|-+++.++ |+.+|.|||.|..+++|+.|+. -|...|+-|.|.+-
T Consensus       165 RmRGLPfdat~~dVv~FF~~~cpv~~----g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF  238 (508)
T KOG1365|consen  165 RMRGLPFDATALDVVEFFGPPCPVTG----GTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF  238 (508)
T ss_pred             EecCCCCCcchHHHHHhcCCCCcccC----CccceEEEECCC-CCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence            88999999999999999973322221    111466777666 8999999999999999999995 44444555555554


Q ss_pred             EccccccCCcCCCCCCchhhhHHHHHHHHHHhh-hccCC--CCccc--c---CCCCCCCcEEEEecCCCccccccchhhH
Q psy2160         584 RAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE-KLFDW--RPDKM--R---GERSKNESVIIVKNLFDPALFDKDVTLI  655 (773)
Q Consensus       584 ~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~--~~~~~--~---~~~~~~~~~l~ikNl~~~~~~~~d~~~~  655 (773)
                      ++.-              .+-.+.   +.+... .+..-  .+...  +   ........||.|++|+....        
T Consensus       239 RSTa--------------aEvqqv---lnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~At--------  293 (508)
T KOG1365|consen  239 RSTA--------------AEVQQV---LNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEAT--------  293 (508)
T ss_pred             HHhH--------------HHHHHH---HHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhh--------
Confidence            4330              111111   111110 11110  00000  0   01123357999999987754        


Q ss_pred             HHHHHHHHHHHhcCCce-e--EEEe---cCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         656 LEYQQDLREECSKCGHV-K--KVVL---HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       656 ~~l~edl~~~f~~fG~V-~--~v~i---~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                         .+||.+.+..|-.- .  -|++   -.++|.|-|||.|.+.++|..|...-+.....+|-|+|.-
T Consensus       294 ---vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp  358 (508)
T KOG1365|consen  294 ---VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP  358 (508)
T ss_pred             ---HHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence               36777776665532 2  1433   2488999999999999999999999988888899998843

>KOG0114|consensus

Probab=99.23  E-value=3e-11  Score=103.88  Aligned_cols=79  Identities=25%  Similarity=0.426  Sum_probs=73.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      +..++-|||+|||+++|.++..++|.+||.|.        .|+|-..++|   +|.|||.|.+..+|.+|+..|+|..+.
T Consensus        15 pevnriLyirNLp~~ITseemydlFGkyg~Ir--------QIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~   83 (124)
T KOG0114|consen   15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIR--------QIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVD   83 (124)
T ss_pred             hhhheeEEEecCCccccHHHHHHHhhcccceE--------EEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccC
Confidence            34678999999999999999999999999999        6898877765   999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      ++.|.|-+-+
T Consensus        84 ~ryl~vlyyq   93 (124)
T KOG0114|consen   84 NRYLVVLYYQ   93 (124)
T ss_pred             CceEEEEecC
Confidence            9999999876

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.23  E-value=3.8e-11  Score=120.55  Aligned_cols=77  Identities=17%  Similarity=0.332  Sum_probs=70.5

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      +...+|||+||++.+|+++|++||+.||.|..        |+|++|.   ..+|+|||+|.++++|..||. |+|..|.+
T Consensus         3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~--------V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d   70 (243)
T PLN03121          3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEH--------VEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVD   70 (243)
T ss_pred             CCceEEEEecCCCCCCHHHHHHHHHhcCCeEE--------EEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCC
Confidence            35689999999999999999999999999999        9999884   456899999999999999995 99999999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      ++|.|.++.
T Consensus        71 ~~I~It~~~   79 (243)
T PLN03121         71 QRVCITRWG   79 (243)
T ss_pred             ceEEEEeCc
Confidence            999998765

>KOG0107|consensus

Probab=99.22  E-value=3e-11  Score=113.71  Aligned_cols=78  Identities=31%  Similarity=0.424  Sum_probs=72.2

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..++.|||+||+..+++.+|..+|..||.|.        +|-|..++     .|||||+|.++-+|..|+..|+|..|.|
T Consensus         8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr--------svWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG   74 (195)
T KOG0107|consen    8 NGNTKVYVGNLGSRATKRELERAFSKYGPLR--------SVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICG   74 (195)
T ss_pred             CCCceEEeccCCCCcchHHHHHHHHhcCcce--------eEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccC
Confidence            4579999999999999999999999999998        78888765     7999999999999999999999999999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      ..|+|++..-.
T Consensus        75 ~r~rVE~S~G~   85 (195)
T KOG0107|consen   75 SRIRVELSTGR   85 (195)
T ss_pred             ceEEEEeecCC
Confidence            99999998743

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.22  E-value=1.5e-10  Score=121.64  Aligned_cols=169  Identities=23%  Similarity=0.322  Sum_probs=115.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|.++|..||.|.        .|.+..+..+|.++|+|||+|.+.++|..|+..++|..|.|++
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~--------~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~  186 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK--------RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP  186 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCcee--------EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence            69999999999999999999999999998        7999999888999999999999999999999999999999999


Q ss_pred             EEEEEccc--cccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         580 IKVERAKF--TMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       580 i~V~~a~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      |.|.++..  .........          .......   ..     .............+++.|++...  .        
T Consensus       187 ~~v~~~~~~~~~~~~~~~~----------~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~--~--------  238 (306)
T COG0724         187 LRVQKAQPASQPRSELSNN----------LDASFAK---KL-----SRGKALLLEKSDNLYVGNLPLKT--A--------  238 (306)
T ss_pred             eEeeccccccccccccccc----------cchhhhc---cc-----cccccccccccceeecccccccc--c--------
Confidence            99999763  111000000          0000000   00     00011122345778888886552  2        


Q ss_pred             HHHHHHHHHhcCCceeEEEecCCC----CCcEEEEEecCHHHHHHHHHHhCC
Q psy2160         658 YQQDLREECSKCGHVKKVVLHDKH----PEGVAQIFFKEPEAADACRELLNG  705 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v~i~~~~----~~G~afV~F~~~e~A~~Ai~~lnG  705 (773)
                       ...+...|..+|.+..+.+....    +.+..++.+.....+..+...+++
T Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (306)
T COG0724         239 -EEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNK  289 (306)
T ss_pred             -hhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccc
Confidence             37889999999999776654422    222333444444444444444333

>KOG4212|consensus

Probab=99.21  E-value=1.7e-10  Score=121.75  Aligned_cols=243  Identities=16%  Similarity=0.144  Sum_probs=185.1

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhh-ccCCEEEEEee-C--CCCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS-KCGHVKKVVLH-D--KHPEGVAQIFFKEPEAADACRELLNGR  421 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~-k~G~V~~V~i~-d--~~~~G~afV~F~~~e~A~~Ai~~lng~  421 (773)
                      ....+.+||.|++  -+..=         ++|++++. +.|+|+.|.+. |  +.++|||.|+|++++.+++|++.||..
T Consensus        41 ~~r~R~vfItNIp--yd~rW---------qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~  109 (608)
T KOG4212|consen   41 AARDRSVFITNIP--YDYRW---------QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY  109 (608)
T ss_pred             ccccceEEEecCc--chhhh---------HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc
Confidence            4456789999993  33221         67888886 58999999765 3  568999999999999999999999999


Q ss_pred             ccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCC
Q psy2160         422 WFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENT  501 (773)
Q Consensus       422 ~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~  501 (773)
                      .+.||+|.|....+.          +..++-                                          .......
T Consensus       110 ~~~GR~l~vKEd~d~----------q~~~~~------------------------------------------~~~r~g~  137 (608)
T KOG4212|consen  110 EVNGRELVVKEDHDE----------QRDQYG------------------------------------------RIVRDGG  137 (608)
T ss_pred             cccCceEEEeccCch----------hhhhhh------------------------------------------heeeccC
Confidence            999999999643221          111100                                          1122456


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      ++|+.++...+-..-|...|+--|...        +--+.+|.+ +.+++..+++|.+.-.+..++..++.....-+.++
T Consensus       138 ~~f~~~~~~q~G~~~l~~~g~ggG~~~--------Rg~~~~D~D-r~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h  208 (608)
T KOG4212|consen  138 GGFGGGGGVQGGNGGLNGGGGGGGDRD--------RGFSRRDDD-RLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLH  208 (608)
T ss_pred             cccccCcceecccccccccCCCCcccc--------CCCCccccc-ccccccCccccccccccchhhhcccchhhhhhhcc
Confidence            899999999999999999999888766        445566665 78899999999999999999987777655555555


Q ss_pred             EEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHH
Q psy2160         582 VERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQD  661 (773)
Q Consensus       582 V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ed  661 (773)
                      + +..                                             +--..++|.||...  +..         ..
T Consensus       209 ~-f~p---------------------------------------------Pl~~k~fvanl~~~--vg~---------~k  231 (608)
T KOG4212|consen  209 I-FSP---------------------------------------------PLHNKVFVANLDYK--VGN---------KK  231 (608)
T ss_pred             C-CCC---------------------------------------------Cccceeeeeccccc--cch---------HH
Confidence            3 111                                             00134679998665  333         67


Q ss_pred             HHHHHhcCCceeEEEe--c-CCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         662 LREECSKCGHVKKVVL--H-DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       662 l~~~f~~fG~V~~v~i--~-~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                      |.+.|.--|.|+.|.+  . .+++.|++.|+|..+-+|..||..|++.-+..|+..+..
T Consensus       232 L~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl  290 (608)
T KOG4212|consen  232 LKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL  290 (608)
T ss_pred             HHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence            8888888899998854  2 277889999999999999999999999888888888877

>KOG4207|consensus

Probab=99.19  E-value=2.8e-11  Score=116.41  Aligned_cols=82  Identities=26%  Similarity=0.446  Sum_probs=79.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|-|-||.+-+|.++|+.+|.+||.|-.        |.|++|..|+.++|||||.|....+|+.|+..|||..|.|+
T Consensus        12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgD--------VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR   83 (256)
T KOG4207|consen   12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGD--------VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR   83 (256)
T ss_pred             cceeEEecceeccCCHHHHHHHHHHhCcccc--------eecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence            7799999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      .|+|+.|...
T Consensus        84 elrVq~aryg   93 (256)
T KOG4207|consen   84 ELRVQMARYG   93 (256)
T ss_pred             eeeehhhhcC
Confidence            9999999843

>PLN03213 repressor of silencing 3; Provisional

Probab=99.19  E-value=1.1e-10  Score=124.87  Aligned_cols=78  Identities=15%  Similarity=0.286  Sum_probs=71.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCCh--HHHHHHHHHhCCcee
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK--ESVDLALSILDGYEI  575 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~--e~A~~Ai~~lng~~i  575 (773)
                      ....+|||+||++++|+++|..+|+.||.|.        +|.|+  +.+|  +|||||+|...  .++.+||..|||..+
T Consensus         8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVk--------dVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEW   75 (759)
T PLN03213          8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVD--------AVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW   75 (759)
T ss_pred             CcceEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCee
Confidence            3568999999999999999999999999999        89999  4457  99999999987  789999999999999


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|+.|+|..|+.
T Consensus        76 KGR~LKVNKAKP   87 (759)
T PLN03213         76 KGGRLRLEKAKE   87 (759)
T ss_pred             cCceeEEeeccH
Confidence            999999999983

>KOG0149|consensus

Probab=99.18  E-value=3.4e-11  Score=118.70  Aligned_cols=84  Identities=23%  Similarity=0.265  Sum_probs=75.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...+.|||+||++.++.+.|+.+|++||.|.        ...|+.|..||+++|||||+|.+.++|.+|++..| -.|.|
T Consensus        10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~--------eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG   80 (247)
T KOG0149|consen   10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIV--------EAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG   80 (247)
T ss_pred             ceEEEEEEcCcccccchHHHHHHHHHhCceE--------EEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccc
Confidence            3568999999999999999999999999999        58999999999999999999999999999996544 45899


Q ss_pred             eEEEEEEcccccc
Q psy2160         578 KKIKVERAKFTMK  590 (773)
Q Consensus       578 ~~i~V~~a~~~~~  590 (773)
                      |+-.|.+|.+..+
T Consensus        81 R~aNcnlA~lg~~   93 (247)
T KOG0149|consen   81 RKANCNLASLGGK   93 (247)
T ss_pred             cccccchhhhcCc
Confidence            9999999987433

>smart00362 RRM_2 RNA recognition motif

Probab=99.18  E-value=9.7e-11  Score=96.47  Aligned_cols=71  Identities=30%  Similarity=0.555  Sum_probs=67.1

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||..++.++|+++|+.||.|..        +.+..+.  +.++|+|||+|.+.++|..|+..+++..+.|++|.
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~   70 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIES--------VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR   70 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence            5899999999999999999999999998        8988876  77899999999999999999999999999999998


Q ss_pred             E
Q psy2160         297 V  297 (773)
Q Consensus       297 V  297 (773)
                      |
T Consensus        71 v   71 (72)
T smart00362       71 V   71 (72)
T ss_pred             e
Confidence            7

>smart00362 RRM_2 RNA recognition motif

Probab=99.17  E-value=1.4e-10  Score=95.47  Aligned_cols=72  Identities=31%  Similarity=0.564  Sum_probs=67.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||..++.++|+++|+.||.|.        .+.+..+.  +.++|+|||+|.+.++|..|+..++|..+.|++|.
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~--------~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~   70 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIE--------SVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR   70 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEE--------EEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence            589999999999999999999999998        78888876  67899999999999999999999999999999998


Q ss_pred             EE
Q psy2160         582 VE  583 (773)
Q Consensus       582 V~  583 (773)
                      |+
T Consensus        71 v~   72 (72)
T smart00362       71 VE   72 (72)
T ss_pred             eC
Confidence            74

>KOG4207|consensus

Probab=99.17  E-value=4.5e-11  Score=115.02  Aligned_cols=85  Identities=25%  Similarity=0.427  Sum_probs=80.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|.|-||-.-+|.++|+.+|++||.|-        +|.|..|+.|+.++|||||-|....+|+.|+..|+|.+|.
T Consensus        10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vg--------DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld   81 (256)
T KOG4207|consen   10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVG--------DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD   81 (256)
T ss_pred             cccceeEEecceeccCCHHHHHHHHHHhCccc--------ceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence            34678999999999999999999999999998        8999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEccccc
Q psy2160         577 GKKIKVERAKFTM  589 (773)
Q Consensus       577 g~~i~V~~a~~~~  589 (773)
                      |+.|+|++|+...
T Consensus        82 gRelrVq~arygr   94 (256)
T KOG4207|consen   82 GRELRVQMARYGR   94 (256)
T ss_pred             cceeeehhhhcCC
Confidence            9999999998753

>KOG0130|consensus

Probab=99.17  E-value=4.4e-11  Score=107.51  Aligned_cols=81  Identities=25%  Similarity=0.361  Sum_probs=77.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..=.|||+|+...+|+++|.+.|..||.|..        |+|-.|..||..+|||+|+|.+.+.|+.|+..|||..|.|.
T Consensus        71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKN--------ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q  142 (170)
T KOG0130|consen   71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKN--------IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ  142 (170)
T ss_pred             eeEEEEEeccCcchhHHHHHHHHhhcccccc--------eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence            4467999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.++-.
T Consensus       143 ~v~VDw~Fv  151 (170)
T KOG0130|consen  143 NVSVDWCFV  151 (170)
T ss_pred             ceeEEEEEe
Confidence            999998863

>KOG0113|consensus

Probab=99.15  E-value=1.1e-10  Score=118.36  Aligned_cols=80  Identities=25%  Similarity=0.409  Sum_probs=76.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .-+||||+-|+++++|+.|+..|++||.|..        |+|++|.-||+++|||||+|..+-+...|.+..+|..|.|+
T Consensus       100 Py~TLFv~RLnydT~EskLrreF~~YG~Ikr--------irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr  171 (335)
T KOG0113|consen  100 PYKTLFVARLNYDTSESKLRREFEKYGPIKR--------IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR  171 (335)
T ss_pred             ccceeeeeeccccccHHHHHHHHHhcCccee--------EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence            5589999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      .|.|..-.
T Consensus       172 ri~VDvER  179 (335)
T KOG0113|consen  172 RILVDVER  179 (335)
T ss_pred             EEEEEecc
Confidence            99996543

>PF13893 RRM_5: RNA recognition motif

Probab=99.15  E-value=1.9e-10  Score=91.35  Aligned_cols=55  Identities=36%  Similarity=0.459  Sum_probs=50.8

Q ss_pred             HHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         662 LREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       662 l~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                      |+++|++||.|.+|.+.+.. .|+|||+|.+.++|..|+..|||+.|+|++|+|+|
T Consensus         1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~   55 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY   55 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            67899999999999998765 69999999999999999999999999999999987

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.15  E-value=1.8e-10  Score=115.79  Aligned_cols=76  Identities=17%  Similarity=0.336  Sum_probs=70.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ...+|||+||++.+|+++|+++|+.||.|.        +|+|++|..   .+|+|||+|.++++|..|+ .|+|..|.++
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~--------~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~   71 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIE--------HVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQ   71 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcCCeE--------EEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence            357999999999999999999999999999        899999954   5689999999999999999 7999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      +|.|..+.
T Consensus        72 ~I~It~~~   79 (243)
T PLN03121         72 RVCITRWG   79 (243)
T ss_pred             eEEEEeCc
Confidence            99999876

>smart00360 RRM RNA recognition motif

Probab=99.14  E-value=1.7e-10  Score=94.55  Aligned_cols=70  Identities=37%  Similarity=0.562  Sum_probs=66.6

Q ss_pred             EcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEEE
Q psy2160         220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  297 (773)
Q Consensus       220 V~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~V  297 (773)
                      |+|||..+++++|+++|+.||.|..        +.+..+..++.++|+|||.|.+.++|..|+..|++..+.|++|+|
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v   70 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIES--------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV   70 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeE--------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence            6899999999999999999999988        999998877999999999999999999999999999999999987

>KOG0106|consensus

Probab=99.13  E-value=1.1e-10  Score=116.37  Aligned_cols=165  Identities=25%  Similarity=0.352  Sum_probs=124.7

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ..|||++||+.+.+.+|..||..||.|..        |.|.        .||+||.|.+.-+|.-|+--||+..|.|-.+
T Consensus         2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d--------~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~   65 (216)
T KOG0106|consen    2 PRVYIGRLPYRARERDVERFFKGYGKIPD--------ADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERL   65 (216)
T ss_pred             CceeecccCCccchhHHHHHHhhcccccc--------ceee--------cccceeccCchhhhhcccchhcCceecceee
Confidence            57999999999999999999999999987        5554        4689999999999999999999999999888


Q ss_pred             EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160         296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ  375 (773)
Q Consensus       296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e  375 (773)
                      .|++|....... -.|-..-   +.              .|.  .....+......+++.|+  ...+         ...
T Consensus        66 vve~~r~~~~~~-g~~~~g~---r~--------------~~~--~~~~~p~~s~~r~~~~~~--~~r~---------~~q  114 (216)
T KOG0106|consen   66 VVEHARGKRRGR-GRPRGGD---RR--------------SDS--RRYRPPSRTHFRLIVRNL--SLRV---------SWQ  114 (216)
T ss_pred             eeeccccccccc-CCCCCCC---cc--------------chh--hccCCcccccceeeeccc--hhhh---------hHH
Confidence            998877321111 0000000   00              010  011122455667888887  2222         138


Q ss_pred             HHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEE
Q psy2160         376 DLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE  431 (773)
Q Consensus       376 dL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~  431 (773)
                      +|.+.|+.+|.+....+    ..+.++|+|.+.++|..|+..++|..+.|+.|.+.
T Consensus       115 dl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~  166 (216)
T KOG0106|consen  115 DLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE  166 (216)
T ss_pred             HHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence            89999999999965543    47889999999999999999999999999999994

>smart00360 RRM RNA recognition motif

Probab=99.13  E-value=2.3e-10  Score=93.81  Aligned_cols=71  Identities=37%  Similarity=0.559  Sum_probs=66.6

Q ss_pred             EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160         505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE  583 (773)
Q Consensus       505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~  583 (773)
                      |+|||..++.++|+.+|+.||.|.        .+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|+.|+|+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIE--------SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEe--------EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            679999999999999999999998        79999888778999999999999999999999999999999999874

>KOG0111|consensus

Probab=99.13  E-value=3.5e-11  Score=116.58  Aligned_cols=82  Identities=20%  Similarity=0.305  Sum_probs=79.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||++|...+|+.-|...|=+||.|..        |+++.|-.+++.+|||||+|.-.|+|..||..||+++|.||
T Consensus         9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~d--------IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr   80 (298)
T KOG0111|consen    9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKD--------IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR   80 (298)
T ss_pred             cceeEEeccchHHHHHHHHHhccccccchhh--------cccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence            6689999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      .|+|.+|++.
T Consensus        81 tirVN~AkP~   90 (298)
T KOG0111|consen   81 TIRVNLAKPE   90 (298)
T ss_pred             eEEEeecCCc
Confidence            9999999853

>KOG0114|consensus

Probab=99.13  E-value=3.1e-10  Score=97.67  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=69.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+.-|||+|||+++|.++..++|.+||.|..        |+|=..   ...+|-|||.|.+..+|.+|+..|+|..+.++
T Consensus        17 vnriLyirNLp~~ITseemydlFGkyg~IrQ--------IRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r   85 (124)
T KOG0114|consen   17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQ--------IRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNR   85 (124)
T ss_pred             hheeEEEecCCccccHHHHHHHhhcccceEE--------EEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence            8899999999999999999999999999998        887543   45689999999999999999999999999999


Q ss_pred             EEEEEee
Q psy2160         294 KIKVERA  300 (773)
Q Consensus       294 ~I~V~~A  300 (773)
                      .+.|-..
T Consensus        86 yl~vlyy   92 (124)
T KOG0114|consen   86 YLVVLYY   92 (124)
T ss_pred             eEEEEec
Confidence            9999663

>KOG0130|consensus

Probab=99.12  E-value=8.7e-11  Score=105.66  Aligned_cols=83  Identities=24%  Similarity=0.350  Sum_probs=79.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      +...-.|||+++....|+++|.+.|..||.|.        +|+|-.|+.||-.+|||+|+|.+.+.|+.||..|||..|.
T Consensus        69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiK--------NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll  140 (170)
T KOG0130|consen   69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIK--------NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL  140 (170)
T ss_pred             ceeeEEEEEeccCcchhHHHHHHHHhhccccc--------ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence            34567899999999999999999999999999        8999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |..|.|.|+-.
T Consensus       141 ~q~v~VDw~Fv  151 (170)
T KOG0130|consen  141 GQNVSVDWCFV  151 (170)
T ss_pred             CCceeEEEEEe
Confidence            99999999974

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.11  E-value=3.9e-10  Score=93.35  Aligned_cols=73  Identities=33%  Similarity=0.569  Sum_probs=69.0

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|+|+|||..+++++|.++|+.||.|..        +.+..+.. +.++|+|||.|.+.++|..|+..+++..+.|++|.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~--------~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~   71 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVES--------VRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR   71 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEE--------EEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            4899999999999999999999999998        99999887 68899999999999999999999999999999999


Q ss_pred             EE
Q psy2160         297 VE  298 (773)
Q Consensus       297 V~  298 (773)
                      |.
T Consensus        72 v~   73 (74)
T cd00590          72 VE   73 (74)
T ss_pred             Ee
Confidence            85

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.11  E-value=2.2e-10  Score=120.36  Aligned_cols=79  Identities=32%  Similarity=0.585  Sum_probs=76.0

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      .++|||+|||.++|+++|.++|..||.|..        |.|..+..+|.++|||||.|.+.++|..|+..+++..|.|++
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~--------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~  186 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKR--------VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP  186 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeE--------EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence            599999999999999999999999999988        999999888999999999999999999999999999999999


Q ss_pred             EEEEeec
Q psy2160         295 IKVERAK  301 (773)
Q Consensus       295 I~V~~A~  301 (773)
                      |.|..+.
T Consensus       187 ~~v~~~~  193 (306)
T COG0724         187 LRVQKAQ  193 (306)
T ss_pred             eEeeccc
Confidence            9998865

>KOG0125|consensus

Probab=99.11  E-value=1.9e-10  Score=118.08  Aligned_cols=79  Identities=24%  Similarity=0.387  Sum_probs=74.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|+|+|||+...+.||+..|.+||.|.+        |-|+.+..  -+|||+||+|.++++|++|-..|+|+.+.||
T Consensus        95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld--------VEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGR  164 (376)
T KOG0125|consen   95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD--------VEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGR  164 (376)
T ss_pred             CCceeEeecCCccccCccHHHHHHhhCceee--------EEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeece
Confidence            6689999999999999999999999999998        99999986  4799999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|..|..
T Consensus       165 kIEVn~ATa  173 (376)
T KOG0125|consen  165 KIEVNNATA  173 (376)
T ss_pred             EEEEeccch
Confidence            999998874

>KOG0113|consensus

Probab=99.11  E-value=2.7e-10  Score=115.58  Aligned_cols=81  Identities=25%  Similarity=0.410  Sum_probs=77.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+-++|||.-|+.++++..|+..|+.||.|.        +|+|++|..||+++|||||+|.++-+...|.+..+|..|.|
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ik--------rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg  170 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYGPIK--------RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG  170 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcCcce--------eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence            5679999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|.|..-.
T Consensus       171 rri~VDvER  179 (335)
T KOG0113|consen  171 RRILVDVER  179 (335)
T ss_pred             cEEEEEecc
Confidence            999998644

>smart00361 RRM_1 RNA recognition motif

Probab=99.09  E-value=3.7e-10  Score=94.09  Aligned_cols=60  Identities=32%  Similarity=0.505  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcCCceeEEE--ec-C----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160         657 EYQQDLREECSKCGHVKKVV--LH-D----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE  716 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~--i~-~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~  716 (773)
                      +|++.++++|++||.|.+|.  +. +    ++++|+|||.|.+.++|.+|+..|||+.|+||.|.|+
T Consensus         4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~   70 (70)
T smart00361        4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE   70 (70)
T ss_pred             hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence            46688888888999999884  33 3    5679999999999999999999999999999999873

>KOG0108|consensus

Probab=99.09  E-value=2e-10  Score=126.76  Aligned_cols=78  Identities=28%  Similarity=0.552  Sum_probs=76.6

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      +.|||||+|+++++++|..+|+..|.|..        ++++.|+.||+++|||||+|.+.++|..|++.|||..+.|++|
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s--------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l   90 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS--------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL   90 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccce--------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence            99999999999999999999999999999        9999999999999999999999999999999999999999999


Q ss_pred             EEEeec
Q psy2160         296 KVERAK  301 (773)
Q Consensus       296 ~V~~A~  301 (773)
                      +|.++.
T Consensus        91 ~v~~~~   96 (435)
T KOG0108|consen   91 RVNYAS   96 (435)
T ss_pred             Eeeccc
Confidence            998876

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.06  E-value=1.1e-09  Score=90.53  Aligned_cols=74  Identities=32%  Similarity=0.547  Sum_probs=68.6

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|+|+|||..+++++|+++|+.||.|.        .+.+..++. +.++|+|||.|.+.++|..|++.+++..+.|+.|.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~--------~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~   71 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVE--------SVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR   71 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEE--------EEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            489999999999999999999999998        799998876 36799999999999999999999999999999999


Q ss_pred             EEE
Q psy2160         582 VER  584 (773)
Q Consensus       582 V~~  584 (773)
                      |.+
T Consensus        72 v~~   74 (74)
T cd00590          72 VEF   74 (74)
T ss_pred             EeC
Confidence            863

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0108|consensus

Probab=99.05  E-value=3.4e-10  Score=124.97  Aligned_cols=80  Identities=28%  Similarity=0.525  Sum_probs=77.7

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      +.|||+|+|+++++++|..+|+..|.|.        +++++.|+.||+++|||||+|.+.++|..|++.|||..+.|++|
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~--------s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l   90 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL--------SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL   90 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccc--------eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence            8999999999999999999999999999        89999999999999999999999999999999999999999999


Q ss_pred             EEEEcccc
Q psy2160         581 KVERAKFT  588 (773)
Q Consensus       581 ~V~~a~~~  588 (773)
                      +|.++...
T Consensus        91 ~v~~~~~~   98 (435)
T KOG0108|consen   91 RVNYASNR   98 (435)
T ss_pred             Eeeccccc
Confidence            99998743

>KOG0111|consensus

Probab=99.03  E-value=1.6e-10  Score=112.09  Aligned_cols=83  Identities=19%  Similarity=0.307  Sum_probs=79.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||++|...+|+.-|...|=+||.|.        .|+++.|-.+++++|||||+|.-.|+|..||..||+.++.|
T Consensus         8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~--------dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G   79 (298)
T KOG0111|consen    8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIK--------DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG   79 (298)
T ss_pred             ccceeEEeccchHHHHHHHHHhccccccchh--------hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence            4568999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      +.|+|.+|+..
T Consensus        80 rtirVN~AkP~   90 (298)
T KOG0111|consen   80 RTIRVNLAKPE   90 (298)
T ss_pred             eeEEEeecCCc
Confidence            99999999864

>smart00361 RRM_1 RNA recognition motif

Probab=98.92  E-value=4.1e-09  Score=87.82  Aligned_cols=62  Identities=27%  Similarity=0.429  Sum_probs=55.8

Q ss_pred             HHHHHHHHH----hcCcceeccCCCceEEE-EEecCCC--CCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160         514 QEEFVEVMQ----KCGLVMKDVDTNQMKIK-LYTDPYT--KDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE  583 (773)
Q Consensus       514 ~e~L~~~F~----~~G~I~~~~~~~~~~i~-l~~d~~t--g~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~  583 (773)
                      +++|+++|+    +||.|.        +|. |+.++.+  |.++|+|||+|.+.++|..|+..|||..+.|+.|+++
T Consensus         2 ~~~l~~~~~~~~~~fG~v~--------~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~   70 (70)
T smart00361        2 DEDFEREFSEEEEYFGEVG--------KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE   70 (70)
T ss_pred             chhHHHHHHHHHHhcCCee--------EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence            578889998    999998        685 7777766  8899999999999999999999999999999999873

>KOG0128|consensus

Probab=98.89  E-value=2.3e-11  Score=138.39  Aligned_cols=333  Identities=16%  Similarity=0.168  Sum_probs=227.4

Q ss_pred             ccEEEEcCCCCCCCHHHHH-HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         215 STKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~-~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+..+|-|-+..-+...|+ ..|+-++....-          ..-+.+.....+||+.-..+++|..+++.+.+......
T Consensus       479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~----------g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~g  548 (881)
T KOG0128|consen  479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREY----------GDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYG  548 (881)
T ss_pred             hhhhHhhhccccCCcchHHHHHHHHHhHHHHh----------CCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccc
Confidence            3667788888888888888 677666554330          00011112355799999999999999998877765555


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      ++.+..+....    ..|-                ....             ....+-....|+ .|..-.         
T Consensus       549 tl~~~~~~~~~----~~pr----------------~~~~-------------~~~~~e~~s~~v-~p~~~~---------  585 (881)
T KOG0128|consen  549 TLESFDLCPEK----VLPR----------------VYEA-------------PLERREKESTNV-YPEQQK---------  585 (881)
T ss_pred             cHHHHhhhHHh----hcch----------------hhhh-------------hhhhhhhcccCC-Ccchhh---------
Confidence            44432111100    0000                0000             001112233343 233311         


Q ss_pred             HHHHHHHhhccCCEEEEEeeCC----CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDK----HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~----~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                      ++..+..|..+|.|..|.++.+    |...+.++.+....++..|.. ..|..++++.+.+...+.....          
T Consensus       586 ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~----------  654 (881)
T KOG0128|consen  586 KEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKE----------  654 (881)
T ss_pred             HHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCchhhh----------
Confidence            2467888999999999998862    344488899999999998866 6888888888888765543200          


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160         450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK  529 (773)
Q Consensus       450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~  529 (773)
                                +                 .+...++..           ....++||+||+..+.+.+|...|..+|.+. 
T Consensus       655 ----------~-----------------~~kvs~n~~-----------R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e-  695 (881)
T KOG0128|consen  655 ----------E-----------------NFKVSPNEI-----------RDLIKIFVSNLSPKMSEEDLSERFSPSGTIE-  695 (881)
T ss_pred             ----------h-----------------ccCcCchHH-----------HHHHHHHHhhcchhhcCchhhhhcCccchhh-
Confidence                      0                 001111111           1236789999999999999999999999988 


Q ss_pred             ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHH
Q psy2160         530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE  609 (773)
Q Consensus       530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~  609 (773)
                             .+++....+.|+.+|.|++.|..++++.+||...+++.++         +                       
T Consensus       696 -------~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------K-----------------------  736 (881)
T KOG0128|consen  696 -------VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------K-----------------------  736 (881)
T ss_pred             -------hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------h-----------------------
Confidence                   5666544456899999999999999999999655544333         1                       


Q ss_pred             HHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEec---CCCCCcEE
Q psy2160         610 KLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVA  686 (773)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~---~~~~~G~a  686 (773)
                                               ..|+|.|.+....           ++.++.+|+++|.++++.+.   .+.|.|.|
T Consensus       737 -------------------------~~v~i~g~pf~gt-----------~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a  780 (881)
T KOG0128|consen  737 -------------------------ISVAISGPPFQGT-----------KEELKSLASKTGNVTSLRLVTVRAGKPKGKA  780 (881)
T ss_pred             -------------------------hhhheeCCCCCCc-----------hHHHHhhccccCCccccchhhhhccccccce
Confidence                                     2377888876633           48999999999999987554   48899999


Q ss_pred             EEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCccccc
Q psy2160         687 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK  725 (773)
Q Consensus       687 fV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~~  725 (773)
                      +|.|.+..+|.+|+..+.+..+.-+.+.+..-++..+.+
T Consensus       781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~  819 (881)
T KOG0128|consen  781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK  819 (881)
T ss_pred             eccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence            999999999999999999999998888888766544333

>PF13893 RRM_5: RNA recognition motif

Probab=98.88  E-value=7e-09  Score=82.30  Aligned_cols=56  Identities=29%  Similarity=0.497  Sum_probs=50.0

Q ss_pred             HHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEc
Q psy2160         517 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA  585 (773)
Q Consensus       517 L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a  585 (773)
                      |+++|++||.|.        +|.+..+.     +++|||+|.+.++|..|++.|||..+.|++|+|.+|
T Consensus         1 L~~~f~~fG~V~--------~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVK--------KIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EE--------EEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            688999999998        68886553     589999999999999999999999999999999986

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG1996|consensus

Probab=98.88  E-value=1.9e-09  Score=108.92  Aligned_cols=82  Identities=27%  Similarity=0.460  Sum_probs=71.3

Q ss_pred             CCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC--C---CCCcEEEEEecCHHHHHHHHHHhCCce
Q psy2160         633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD--K---HPEGVAQIFFKEPEAADACRELLNGRW  707 (773)
Q Consensus       633 ~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~--~---~~~G~afV~F~~~e~A~~Ai~~lnGr~  707 (773)
                      +.++|.++||..+.++++      +|+.++.++|++||.|.+|.|+.  +   +..-.+||+|..+++|.+|+-.||||+
T Consensus       280 ptkvlllrnmVg~gevd~------elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy  353 (378)
T KOG1996|consen  280 PTKVLLLRNMVGAGEVDE------ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY  353 (378)
T ss_pred             chHHHHhhhhcCcccccH------HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence            458899999999887764      56799999999999999998875  2   123459999999999999999999999


Q ss_pred             eCCeEEEEEEecC
Q psy2160         708 FGQRQITAETWDG  720 (773)
Q Consensus       708 f~Gr~l~v~~~dg  720 (773)
                      ||||.+.+.||+-
T Consensus       354 FGGr~v~A~Fyn~  366 (378)
T KOG1996|consen  354 FGGRVVSACFYNL  366 (378)
T ss_pred             ecceeeeheeccH
Confidence            9999999999885

>KOG4307|consensus

Probab=98.85  E-value=6.3e-09  Score=115.70  Aligned_cols=80  Identities=20%  Similarity=0.294  Sum_probs=71.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....+.|-+.|+|++++.++|.+||..|-.+--       +|.+.++.+ |..+|.|.|-|++.++|..|...|++..|+
T Consensus       864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-------sI~~r~nd~-G~pTGe~mvAfes~~eAr~A~~dl~~~~i~  935 (944)
T KOG4307|consen  864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-------SIRIRRNDD-GVPTGECMVAFESQEEARRASMDLDGQKIR  935 (944)
T ss_pred             CCCCeEEEecCCCccccHHHHHHHhcccccCCC-------ceeEeecCC-CCcccceeEeecCHHHHHhhhhccccCccc
Confidence            344568999999999999999999999988863       588888776 999999999999999999999999999999


Q ss_pred             CeEEEEEE
Q psy2160         577 GKKIKVER  584 (773)
Q Consensus       577 g~~i~V~~  584 (773)
                      .+.|.|..
T Consensus       936 nr~V~l~i  943 (944)
T KOG4307|consen  936 NRVVSLRI  943 (944)
T ss_pred             ceeEEEEe
Confidence            99998764

>KOG4208|consensus

Probab=98.79  E-value=1.2e-08  Score=99.12  Aligned_cols=81  Identities=20%  Similarity=0.346  Sum_probs=74.9

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhc-CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKC-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~-G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      +...-+||..+|.-..+.+|..+|..+ |.|..        ++|.|++.||+++|||||+|.+++.|.-|-+.||++.|.
T Consensus        47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r--------~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~  118 (214)
T KOG4208|consen   47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTR--------FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM  118 (214)
T ss_pred             CCccceeecccccchhHHHHhhhhhhcCCeeEE--------EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence            366889999999999999999999988 77777        899999999999999999999999999999999999999


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |+.|.|.+-.
T Consensus       119 e~lL~c~vmp  128 (214)
T KOG4208|consen  119 EHLLECHVMP  128 (214)
T ss_pred             hheeeeEEeC
Confidence            9999997644

>KOG4307|consensus

Probab=98.79  E-value=1.1e-07  Score=106.13  Aligned_cols=463  Identities=14%  Similarity=0.121  Sum_probs=248.6

Q ss_pred             CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      +-++.+-|-+++++.+....+++++|...-.-.         +.|..+.-.+...|-++|.|....++++|++ -|.+.+
T Consensus       307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~---------~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~  376 (944)
T KOG4307|consen  307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQS---------TDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDD  376 (944)
T ss_pred             ccchhheeeecccccccccchhhhhcCcccccc---------cchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhh
Confidence            334667777889999999999999998543322         4454454423347899999999999999998 677888


Q ss_pred             cCeEEEEEeecccccCCC-----CCC--CCchhhhhHHHHHHHHHHHhh-hccCCCCccCCCCCCCCcEEEEecCCCccc
Q psy2160         291 RGKKIKVERAKFTMKGEA-----YDP--KLKPKKKRKKDLEKLKKAQEK-LFDWRPDKMRGERSKNESVIIVKNLFDPAL  362 (773)
Q Consensus       291 ~g~~I~V~~A~~~~k~~~-----~~p--~~~~~~~~~k~~~~~~k~~~k-~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~  362 (773)
                      ..|.+.|..+-...+.-+     ..+  ......-.         .+.- .....+.......-....+|+|..|  |..
T Consensus       377 ~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~---------p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l--P~~  445 (944)
T KOG4307|consen  377 VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGR---------PIAPPRAMVRPGQNVPFPGGAGGALYVFQL--PVM  445 (944)
T ss_pred             hhcceeecCCCccccccCccccccCCCCcccccCCC---------CCCCcccccCCCCCCCCCCCccceEEeccC--Ccc
Confidence            899999876553211110     000  00000000         0000 0000000000112345678999999  333


Q ss_pred             cchhhHHHHHHHHHHHHHhhccCCEEE-EEee---CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcc
Q psy2160         363 FDKDVTLILEYQQDLREECSKCGHVKK-VVLH---DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR  438 (773)
Q Consensus       363 ~~~d~~~~~ei~edL~e~f~k~G~V~~-V~i~---d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~  438 (773)
                      ...         .++.+.|...-.|++ |.|-   .+.-++.|||.|..++++..|...-+..+++.|.|.|........
T Consensus       446 t~~---------~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m  516 (944)
T KOG4307|consen  446 TPI---------VPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM  516 (944)
T ss_pred             ccc---------cchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence            322         678888988777776 5443   345688999999999999999887777788888898864332211


Q ss_pred             cccchhHHHHHHHHHHHH-----HHhhhhhhh--------hh---hhccc---------CCCC----CCCCCCchHHhhh
Q psy2160         439 YKIQETAEEREARLKKWE-----TFLGKKIKV--------ER---AKFTM---------KGEA----YDPKLKPKKKRKK  489 (773)
Q Consensus       439 ~~~~~~~~e~~~r~~~~~-----~~l~~~~~~--------~~---~~~~~---------~G~~----~~p~~~~~~~r~~  489 (773)
                        ..+...+...++.++.     ..|.+....        +.   ..+..         .+..    ..|.+..+..+..
T Consensus       517 --~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~dN~~~~~  594 (944)
T KOG4307|consen  517 --MMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRDNRDRSR  594 (944)
T ss_pred             --HHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhcCCccCccccccccccCCccc
Confidence              1122222222222221     112211000        00   00000         0000    0011100000000


Q ss_pred             --------hHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhc------------CcceeccCC-----------CceEE
Q psy2160         490 --------DLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKC------------GLVMKDVDT-----------NQMKI  538 (773)
Q Consensus       490 --------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~------------G~I~~~~~~-----------~~~~i  538 (773)
                              ..........-.++-|.|.|+....+.+.+-|+.-            |.+. ++-.           ..+.+
T Consensus       595 ~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~~~~~~~~~sekn~Pa~~~~~~~~gv~~-~p~v~~~~~~~l~~~r~~~~  673 (944)
T KOG4307|consen  595 SRSPVRRRNSPRRREEHTRWCVQVNNVPFRMKDEELLEWFSEKNRPAKLTRTFYDGVAS-DPWVAEFSSESLMKRRSFGI  673 (944)
T ss_pred             ccCccccCCCccccchhhhhhhcccCcceeecchhhhhhhcccCCcccccccccCCCCC-CcccccccccccccccCCCc
Confidence                    00000001112466778888887777777777521            1111 1100           00000


Q ss_pred             EEE----------ecC---CCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCC-------------
Q psy2160         539 KLY----------TDP---YTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE-------------  592 (773)
Q Consensus       539 ~l~----------~d~---~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~-------------  592 (773)
                      ..+          .+.   ..-...|.-+++|.+.-..+.||...+..++.+..+.+-.+.+...+.             
T Consensus       674 g~l~tg~~lr~~~i~~~~~~~~~~~g~~~~e~~~~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs~~~~p~~p~p~~~gg  753 (944)
T KOG4307|consen  674 GTLCTGRTLRLRYIDNAKADEILKIGDVYGEGKRQMNEEAALQHEVAEKANPPSFFNAPAATRGSGPMPPLNPAPLPSGG  753 (944)
T ss_pred             cccccCcccccchhhhhhhccccccccceeccCCccchhHHHHHHhhhhccCCCcccccccccccCCCCCCCCCCCCCCc
Confidence            000          000   012345778999999999999999999999988888877766542110             


Q ss_pred             c----------CC---CCCC---chh-hhH-HHHHHH-------HHHhh-----------hccC-------C--------
Q psy2160         593 A----------YD---PKLK---PKK-KRK-KDLEKL-------KKAQE-----------KLFD-------W--------  621 (773)
Q Consensus       593 ~----------~~---~~~~---~~~-~k~-~~~~~~-------~~~~~-----------~~~~-------~--------  621 (773)
                      .          .+   +...   +.. .+. .....-       ...+.           ...+       .        
T Consensus       754 ~nG~~~p~pn~~NdGapg~g~~vp~~f~~gp~~~~gp~g~gggP~~~qngP~sl~~~p~~~f~sn~p~~~gf~pg~rggp  833 (944)
T KOG4307|consen  754 QNGMNVPPPNGFNDGAPGRGGFVPRGFSQGPGMGRGPHGGGGGPNFYQNGPNSLNNGPQGQFRSNQPNDGGFRPGFRGGP  833 (944)
T ss_pred             cCCCCCCCCCCCCCCCCCcCCcCCccccCCCCCCCCCCCCCCCccccccCCcccCCCCccccCCCCCCcCCcCCccCCCC
Confidence            0          00   0000   000 000 000000       00000           0000       0        


Q ss_pred             -----CCcc--------cc---C-----CCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCcee-EEEec-
Q psy2160         622 -----RPDK--------MR---G-----ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK-KVVLH-  678 (773)
Q Consensus       622 -----~~~~--------~~---~-----~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~-~v~i~-  678 (773)
                           .+..        ..   +     ......++|-+.|++...+|           +||.++|.-|-.+- +|.+. 
T Consensus       834 p~~g~gpg~~~g~~p~~~~~P~~~~~~~~~~pGp~V~~~~n~Pf~v~l-----------~dI~~FF~dY~~~p~sI~~r~  902 (944)
T KOG4307|consen  834 PGRGGGPGGFQGGSPGDDSQPSQELMELIKSPGPRVLSCNNFPFDVTL-----------EDIVEFFNDYEPDPNSIRIRR  902 (944)
T ss_pred             CCCCCCCCCCCCCCCCCCCCChHHHHHhcCCCCCeEEEecCCCccccH-----------HHHHHHhcccccCCCceeEee
Confidence                 0000        00   0     01133569999999887553           89999999987554 34443 


Q ss_pred             --CCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         679 --DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       679 --~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                        ++.+.|-+.|.|++.++|.+|..-|+++.+..|.|.+..
T Consensus       903 nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i  943 (944)
T KOG4307|consen  903 NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI  943 (944)
T ss_pred             cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence              377889999999999999999999999999999998754

>KOG1995|consensus

Probab=98.78  E-value=4.5e-09  Score=110.12  Aligned_cols=91  Identities=25%  Similarity=0.438  Sum_probs=87.0

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      +.+.+|||-+||..+++.+|.++|.+||+|..+-.|++|+|+||+|+.|+.+||.|.|.|.+...|+.||..+++..|.|
T Consensus        64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g  143 (351)
T KOG1995|consen   64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG  143 (351)
T ss_pred             cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeccc
Q psy2160         293 KKIKVERAKFT  303 (773)
Q Consensus       293 ~~I~V~~A~~~  303 (773)
                      .+|+|..|...
T Consensus       144 n~ikvs~a~~r  154 (351)
T KOG1995|consen  144 NTIKVSLAERR  154 (351)
T ss_pred             CCchhhhhhhc
Confidence            99999887743

>KOG4208|consensus

Probab=98.68  E-value=4.9e-08  Score=94.94  Aligned_cols=84  Identities=18%  Similarity=0.313  Sum_probs=76.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhc-CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKC-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~-G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ......+||..+|..+-+.+|..+|.+| |.+.        ++++.++..||.++|||||+|.+++.|.-|-+.||++.|
T Consensus        46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~--------r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl  117 (214)
T KOG4208|consen   46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVT--------RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL  117 (214)
T ss_pred             cCCccceeecccccchhHHHHhhhhhhcCCeeE--------EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence            3456789999999999999999999999 6666        788889999999999999999999999999999999999


Q ss_pred             cCeEEEEEEcccc
Q psy2160         576 RGKKIKVERAKFT  588 (773)
Q Consensus       576 ~g~~i~V~~a~~~  588 (773)
                      .|+.|.|..-...
T Consensus       118 ~e~lL~c~vmppe  130 (214)
T KOG4208|consen  118 MEHLLECHVMPPE  130 (214)
T ss_pred             hhheeeeEEeCch
Confidence            9999999986643

>KOG0415|consensus

Probab=98.63  E-value=5.6e-08  Score=100.70  Aligned_cols=82  Identities=21%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      .++.+.|||..|.+-+|.++|.-+|++||.|.        +|.|++|..||.+-.||||+|.+.+++.+|.-.|++..|.
T Consensus       236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~--------sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID  307 (479)
T KOG0415|consen  236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIV--------SCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID  307 (479)
T ss_pred             CCCcceEEEEecCCcccccchhhHHhhcccce--------eeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence            34678999999999999999999999999999        8999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      .+.|+|.+++
T Consensus       308 DrRIHVDFSQ  317 (479)
T KOG0415|consen  308 DRRIHVDFSQ  317 (479)
T ss_pred             cceEEeehhh
Confidence            9999999877

>KOG0415|consensus

Probab=98.60  E-value=6.4e-08  Score=100.27  Aligned_cols=84  Identities=21%  Similarity=0.292  Sum_probs=79.5

Q ss_pred             cCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       210 ~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      ++.|.-+-|||..|.+-+|.++|.-+||.||.|.+        +.+++|..||.+-.||||+|.+.+++++|.-.|++..
T Consensus       234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~s--------ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL  305 (479)
T KOG0415|consen  234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVS--------CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL  305 (479)
T ss_pred             ccCCCcceEEEEecCCcccccchhhHHhhccccee--------eeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence            35677789999999999999999999999999999        9999999999999999999999999999999999999


Q ss_pred             ecCeEEEEEeec
Q psy2160         290 IRGKKIKVERAK  301 (773)
Q Consensus       290 l~g~~I~V~~A~  301 (773)
                      |..++|+|.++.
T Consensus       306 IDDrRIHVDFSQ  317 (479)
T KOG0415|consen  306 IDDRRIHVDFSQ  317 (479)
T ss_pred             eccceEEeehhh
Confidence            999999998765

>KOG0128|consensus

Probab=98.60  E-value=4.2e-09  Score=120.32  Aligned_cols=235  Identities=23%  Similarity=0.225  Sum_probs=172.0

Q ss_pred             cEEEEcCCCCCCCHH-HHHHHHhhcCcccccccCCceeEEEEecCCCCCcce-EEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         216 TKVYVSNLPLDLTQE-EFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG-DALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       216 ~~VyV~nLP~~~te~-el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG-~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...++.++.+..... ..+..|..+|.|..        |++..... ....+ ++++.+....+++.|.. ..+..+.++
T Consensus       572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vek--------v~~p~~g~-k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~  641 (881)
T KOG0128|consen  572 REKESTNVYPEQQKKEIQRRQFKGEGNVEK--------VNGPKRGF-KAHEQPQQQKVQSKHGSAESATV-PAGGALANR  641 (881)
T ss_pred             hhhcccCCCcchhhHHhhHHHhhccccccc--------ccCccccc-cccccchhhhhhccccchhhccc-ccccccCCc
Confidence            444556665555444 56778889999998        78776333 22223 88999999999999987 677778888


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .+.|..+....+..  ++...++                            ..+...++|++|++....           
T Consensus       642 ~~av~~ad~~~~~~--~~kvs~n----------------------------~~R~~~~~fvsnl~~~~~-----------  680 (881)
T KOG0128|consen  642 SAAVGLADAEEKEE--NFKVSPN----------------------------EIRDLIKIFVSNLSPKMS-----------  680 (881)
T ss_pred             cccCCCCCchhhhh--ccCcCch----------------------------HHHHHHHHHHhhcchhhc-----------
Confidence            88876655332211  1111110                            012234588889854433           


Q ss_pred             HHHHHHHhhccCCEEEEEee----CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLH----DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~----d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                      ..+|...|..+|.+..|.+.    .+..+|.||+.|..++++.+||....+..++                         
T Consensus       681 ~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-------------------------  735 (881)
T KOG0128|consen  681 EEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-------------------------  735 (881)
T ss_pred             CchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-------------------------
Confidence            27899999999988866443    4567899999999999999999865443333                         


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160         450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK  529 (773)
Q Consensus       450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~  529 (773)
                                                                        ...|+|+|+|+..|.++++.+|+.+|.+. 
T Consensus       736 --------------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~-  764 (881)
T KOG0128|consen  736 --------------------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVT-  764 (881)
T ss_pred             --------------------------------------------------hhhhheeCCCCCCchHHHHhhccccCCcc-
Confidence                                                              24689999999999999999999999999 


Q ss_pred             ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEc
Q psy2160         530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA  585 (773)
Q Consensus       530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a  585 (773)
                             +.+++.... |+++|.|+|.|.++.+|.+++...++..++-+.+.|...
T Consensus       765 -------~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs  812 (881)
T KOG0128|consen  765 -------SLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS  812 (881)
T ss_pred             -------ccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence                   677888776 899999999999999999999888888777666666553

>KOG1995|consensus

Probab=98.55  E-value=5.5e-08  Score=102.07  Aligned_cols=92  Identities=26%  Similarity=0.443  Sum_probs=88.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...+.+|||-+||..++...|.++|.+||.|..+..|++|.|.|++|.+|+.++|-|.|+|.++..|+.||..+++..|.
T Consensus        63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~  142 (351)
T KOG1995|consen   63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC  142 (351)
T ss_pred             ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |..|+|.+|...
T Consensus       143 gn~ikvs~a~~r  154 (351)
T KOG1995|consen  143 GNTIKVSLAERR  154 (351)
T ss_pred             CCCchhhhhhhc
Confidence            999999999854

>KOG4660|consensus

Probab=98.53  E-value=4.1e-07  Score=100.30  Aligned_cols=70  Identities=23%  Similarity=0.414  Sum_probs=64.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|+|-|||.+|++++|+.+|+.||.|..        |+.-+..     +|..||+|.+..+|+.|++.|++..|.|+
T Consensus        74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--------ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~  140 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--------IRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGK  140 (549)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHhhcchhh--------hhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence            5689999999999999999999999999998        7776544     57999999999999999999999999998


Q ss_pred             EEE
Q psy2160         294 KIK  296 (773)
Q Consensus       294 ~I~  296 (773)
                      .|.
T Consensus       141 ~~k  143 (549)
T KOG4660|consen  141 RIK  143 (549)
T ss_pred             hhc
Confidence            888

>KOG0226|consensus

Probab=98.50  E-value=2.6e-07  Score=92.32  Aligned_cols=83  Identities=16%  Similarity=0.282  Sum_probs=76.9

Q ss_pred             CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      .+....+||++.|..+++.+-|...|.+|-....        .++++|+.||+++||+||.|.++.++..|+..|||..+
T Consensus       186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~--------akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV  257 (290)
T KOG0226|consen  186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQK--------AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV  257 (290)
T ss_pred             CccccceeecccccccccHHHHHHHHHhccchhh--------ccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence            3347799999999999999999999999998887        89999999999999999999999999999999999999


Q ss_pred             cCeEEEEEeec
Q psy2160         291 RGKKIKVERAK  301 (773)
Q Consensus       291 ~g~~I~V~~A~  301 (773)
                      +.++|....+.
T Consensus       258 gsrpiklRkS~  268 (290)
T KOG0226|consen  258 GSRPIKLRKSE  268 (290)
T ss_pred             ccchhHhhhhh
Confidence            99999986554

>KOG4661|consensus

Probab=98.49  E-value=2.8e-07  Score=100.49  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=78.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|+|.+|...+.--+|+.+|++||.|.        ..+|+++..+-..++|+||++.+.++|.++|..||-+.|+
T Consensus       402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVv--------GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH  473 (940)
T KOG4661|consen  402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVV--------GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH  473 (940)
T ss_pred             cccccceeeeccccchhhhHHHHHHHHhccee--------ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence            45678999999999999999999999999999        7999998776556899999999999999999999999999


Q ss_pred             CeEEEEEEccccccC
Q psy2160         577 GKKIKVERAKFTMKG  591 (773)
Q Consensus       577 g~~i~V~~a~~~~~~  591 (773)
                      |+.|.|+.|+....+
T Consensus       474 GrmISVEkaKNEp~G  488 (940)
T KOG4661|consen  474 GRMISVEKAKNEPGG  488 (940)
T ss_pred             ceeeeeeecccCccc
Confidence            999999999976443

>KOG0533|consensus

Probab=98.44  E-value=5.3e-07  Score=92.20  Aligned_cols=81  Identities=23%  Similarity=0.387  Sum_probs=75.0

Q ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ++..++|+|.|||+.|+.++|.++|..||.+..        +-|..++. |.+.|.|-|.|...++|..|++.+++..+.
T Consensus        80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r--------~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ld  150 (243)
T KOG0533|consen   80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKR--------VAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALD  150 (243)
T ss_pred             CCCcceeeeecCCcCcchHHHHHHHHHhccceE--------EeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccC
Confidence            336699999999999999999999999998887        88889988 999999999999999999999999999999


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |++|.+....
T Consensus       151 G~~mk~~~i~  160 (243)
T KOG0533|consen  151 GRPMKIEIIS  160 (243)
T ss_pred             CceeeeEEec
Confidence            9999997755

>KOG0129|consensus

Probab=98.42  E-value=2.3e-06  Score=93.73  Aligned_cols=159  Identities=20%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC-CC--Ccce---EEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TK--DFKG---DALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~-tg--~~kG---~AfV~F~~~esA~~Al~~lng  287 (773)
                      -.+.|||++||.+++|+.|...|..||.+..         -...... .+  -++|   |+|+.|.++.++..-|..+-.
T Consensus       258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V---------dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~  328 (520)
T KOG0129|consen  258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV---------DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE  328 (520)
T ss_pred             cccceeecCCCccccHHHHHhhcccccceEe---------ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence            6789999999999999999999999999984         3332111 01  2466   999999999998776654432


Q ss_pred             ceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCc-----cCCCCCCCCcEEEEecCCCccc
Q psy2160         288 YEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK-----MRGERSKNESVIIVKNLFDPAL  362 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~-----~~~~~~~~~~~v~l~Nl~~p~~  362 (773)
                       .-.+-.+.|.......+.                        -++.-|..-+     .........+||||+.++.|..
T Consensus       329 -~~~~~yf~vss~~~k~k~------------------------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~  383 (520)
T KOG0129|consen  329 -GEGNYYFKVSSPTIKDKE------------------------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLT  383 (520)
T ss_pred             -cccceEEEEecCcccccc------------------------eeEEeeEeccchhhhccCcccCccceEEecCCCCcch
Confidence             111222333222211110                        0111222111     1122345678999999977755


Q ss_pred             cchhhHHHHHHHHHHHHHhh-ccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHH
Q psy2160         363 FDKDVTLILEYQQDLREECS-KCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACREL  417 (773)
Q Consensus       363 ~~~d~~~~~ei~edL~e~f~-k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~  417 (773)
                      .           ++|..+|. -||.|..|-|..    +-+.|.|-|.|.+..+-.+||.+
T Consensus       384 A-----------~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa  432 (520)
T KOG0129|consen  384 A-----------EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA  432 (520)
T ss_pred             H-----------HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence            3           77999998 599999887753    34899999999999999999884

>KOG4661|consensus

Probab=98.41  E-value=4.9e-07  Score=98.65  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=76.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|||++|...+...+|..+|++||.|.-        .+++.+..+--.++|+||++.+.++|.+||..|+.+.|.|+
T Consensus       404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvG--------AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr  475 (940)
T KOG4661|consen  404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVG--------AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR  475 (940)
T ss_pred             cccceeeeccccchhhhHHHHHHHHhcceec--------eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence            5689999999999999999999999999998        89999987777799999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      .|.|+.|+-.
T Consensus       476 mISVEkaKNE  485 (940)
T KOG4661|consen  476 MISVEKAKNE  485 (940)
T ss_pred             eeeeeecccC
Confidence            9999998854

>KOG0129|consensus

Probab=98.36  E-value=5e-06  Score=91.14  Aligned_cols=162  Identities=19%  Similarity=0.244  Sum_probs=109.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CCCCcc---eEEEEeCChHHHHHHHHHhCCc
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKG---DALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg~~kG---~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      .-.+.|||++||+++++++|...|..||.+..|+...       .... .-.++|   |+|+.|.++.+++.-+....- 
T Consensus       257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k-------~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-  328 (520)
T KOG0129|consen  257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGK-------ANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-  328 (520)
T ss_pred             ccccceeecCCCccccHHHHHhhcccccceEeecCCC-------ccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-
Confidence            4568999999999999999999999999998443220       0100 012456   999999999888876655433 


Q ss_pred             eecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcc----c-cCCCCCCCcEEEEecCCCcccc
Q psy2160         574 EIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK----M-RGERSKNESVIIVKNLFDPALF  648 (773)
Q Consensus       574 ~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~ikNl~~~~~~  648 (773)
                        ....+.+.......+...                      -+...|....    + .....-+.++|+|..|+.+  +
T Consensus       329 --~~~~~yf~vss~~~k~k~----------------------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprp--l  382 (520)
T KOG0129|consen  329 --GEGNYYFKVSSPTIKDKE----------------------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRP--L  382 (520)
T ss_pred             --cccceEEEEecCcccccc----------------------eeEEeeEeccchhhhccCcccCccceEEecCCCCc--c
Confidence              433333332221111000                      1222332211    1 1122345799999999988  5


Q ss_pred             ccchhhHHHHHHHHHHHHh-cCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHH
Q psy2160         649 DKDVTLILEYQQDLREECS-KCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACREL  702 (773)
Q Consensus       649 ~~d~~~~~~l~edl~~~f~-~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~  702 (773)
                      ..         ++|..+|. -||.|.-+-|.-    +.|+|-|-|.|.+..+=.+||.+
T Consensus       383 ~A---------~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa  432 (520)
T KOG0129|consen  383 TA---------EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA  432 (520)
T ss_pred             hH---------HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence            54         88999998 699999887753    78999999999999999999886

>KOG0132|consensus

Probab=98.35  E-value=7.7e-07  Score=100.99  Aligned_cols=74  Identities=20%  Similarity=0.422  Sum_probs=69.4

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      -.+||||++||..+++.+|..+|+.||.|.        +|.|+..      +|||||++.+..+|.+|+..|++..+.++
T Consensus       420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiq--------Si~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k  485 (894)
T KOG0132|consen  420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQ--------SIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADK  485 (894)
T ss_pred             eeeeeeeccccchhhHHHHHHHHHhcccce--------eEeeccC------CceeEEEEeehhHHHHHHHHHhcccccce
Confidence            458999999999999999999999999999        7877643      89999999999999999999999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      .|+|.||.
T Consensus       486 ~Iki~Wa~  493 (894)
T KOG0132|consen  486 TIKIAWAV  493 (894)
T ss_pred             eeEEeeec
Confidence            99999997

>KOG0132|consensus

Probab=98.33  E-value=8.5e-07  Score=100.64  Aligned_cols=74  Identities=22%  Similarity=0.414  Sum_probs=69.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      -++||||++||..+++.+|..+|..||.|.+        |.|+.      ++|+|||+..+..+|.+|+..|.+..+.++
T Consensus       420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqS--------i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k  485 (894)
T KOG0132|consen  420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQS--------IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADK  485 (894)
T ss_pred             eeeeeeeccccchhhHHHHHHHHHhccccee--------Eeecc------CCceeEEEEeehhHHHHHHHHHhcccccce
Confidence            5799999999999999999999999999998        88753      478999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      .|+|.+|.
T Consensus       486 ~Iki~Wa~  493 (894)
T KOG0132|consen  486 TIKIAWAV  493 (894)
T ss_pred             eeEEeeec
Confidence            99999987

>KOG0153|consensus

Probab=98.28  E-value=1.7e-06  Score=90.11  Aligned_cols=76  Identities=17%  Similarity=0.353  Sum_probs=67.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH-HhCCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS-ILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~-~lng~~i~  576 (773)
                      ...++|||+||-..+++.+|+++|.+||.|.        +|.+...      +++|||+|.+.++|+.|.. .+|...|.
T Consensus       226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeir--------si~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~  291 (377)
T KOG0153|consen  226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIR--------SIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN  291 (377)
T ss_pred             cceeEEEecccccchhHHHHHHHHhhcCCee--------eEEeecc------cccceeeehhhHHHHHHHHhhcceeeec
Confidence            4568999999988999999999999999999        7888754      6799999999999999875 45667789


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |.+|.|.|+..
T Consensus       292 G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  292 GFRLKIKWGRP  302 (377)
T ss_pred             ceEEEEEeCCC
Confidence            99999999985

>KOG4209|consensus

Probab=98.28  E-value=1e-06  Score=90.44  Aligned_cols=81  Identities=26%  Similarity=0.381  Sum_probs=76.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..+.|||+|+.+.+|.+++..+|+.||.|..        |.|..|..+|.++|||||.|.+.+.+..|+. ||+..|.|+
T Consensus       100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~--------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~  170 (231)
T KOG4209|consen  100 DAPSVWVGNVDFLVTLTKIELHFESCGGINR--------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP  170 (231)
T ss_pred             CCceEEEeccccccccchhhheeeccCCccc--------eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence            6799999999999999999999999999998        9999999988999999999999999999999 999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      .|.|.+....
T Consensus       171 ~i~vt~~r~~  180 (231)
T KOG4209|consen  171 AIEVTLKRTN  180 (231)
T ss_pred             cceeeeeeee
Confidence            9999876643

>KOG0533|consensus

Probab=98.27  E-value=2.5e-06  Score=87.25  Aligned_cols=81  Identities=22%  Similarity=0.374  Sum_probs=74.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...+.|+|.|||..|+.++|+++|..||.+.        .+-|-+|+. |.+.|.|-|.|...++|..|++.+||..+.|
T Consensus        81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~--------r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG  151 (243)
T KOG0533|consen   81 TRSTKVNVSNLPYGVIDADLKELFAEFGELK--------RVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDG  151 (243)
T ss_pred             CCcceeeeecCCcCcchHHHHHHHHHhccce--------EEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCC
Confidence            3458899999999999999999999999887        788888886 9999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.+.....
T Consensus       152 ~~mk~~~i~~  161 (243)
T KOG0533|consen  152 RPMKIEIISS  161 (243)
T ss_pred             ceeeeEEecC
Confidence            9999887763

>KOG4454|consensus

Probab=98.26  E-value=3.1e-07  Score=89.72  Aligned_cols=150  Identities=21%  Similarity=0.318  Sum_probs=120.1

Q ss_pred             CCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC--CCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160         347 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH--PEGVAQIFFKEPEAADACRELLNGRWFG  424 (773)
Q Consensus       347 ~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~--~~G~afV~F~~~e~A~~Ai~~lng~~~~  424 (773)
                      ...++|+|.||.+-  ++         ++-|.++|-..|+|.+|.|++..  ...+|||.|.+.-+..-|+++|||..+.
T Consensus         7 e~drtl~v~n~~~~--v~---------eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~   75 (267)
T KOG4454|consen    7 EMDRTLLVQNMYSG--VS---------EELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE   75 (267)
T ss_pred             chhhHHHHHhhhhh--hh---------HHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence            45789999999433  22         26788999999999999998632  2339999999999999999999999998


Q ss_pred             CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEE
Q psy2160         425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVY  504 (773)
Q Consensus       425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~  504 (773)
                      ++.+.+.+..|..                                                              ..   
T Consensus        76 ~~e~q~~~r~G~s--------------------------------------------------------------ha---   90 (267)
T KOG4454|consen   76 EDEEQRTLRCGNS--------------------------------------------------------------HA---   90 (267)
T ss_pred             cchhhcccccCCC--------------------------------------------------------------cc---
Confidence            8888886544322                                                              00   


Q ss_pred             EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160         505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE  583 (773)
Q Consensus       505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~  583 (773)
                        -|...++.+.+..+|+..|.|.        .+++.++.+ |+++.++|++|...-+.-.|+....+....-+++.+.
T Consensus        91 --pld~r~~~ei~~~v~s~a~p~~--------~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~g  158 (267)
T KOG4454|consen   91 --PLDERVTEEILYEVFSQAGPIE--------GVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIG  158 (267)
T ss_pred             --hhhhhcchhhheeeecccCCCC--------Ccccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccc
Confidence              1455688999999999999998        688888876 8899999999999999999998888887776666555

>KOG4454|consensus

Probab=98.24  E-value=2.7e-07  Score=90.17  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      -..+|||.||-..++++-|.++|-..|+|..        |.|..+.+ ++.+ ||||.|.++-++..|++++||..+.+.
T Consensus         8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k--------v~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~   77 (267)
T KOG4454|consen    8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK--------VGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEED   77 (267)
T ss_pred             hhhHHHHHhhhhhhhHHHHHHHhhccCceEE--------EeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccc
Confidence            5589999999999999999999999999998        99998888 8888 999999999999999999999999999


Q ss_pred             EEEEEe
Q psy2160         294 KIKVER  299 (773)
Q Consensus       294 ~I~V~~  299 (773)
                      .|.|.+
T Consensus        78 e~q~~~   83 (267)
T KOG4454|consen   78 EEQRTL   83 (267)
T ss_pred             hhhccc
Confidence            998855

>KOG0226|consensus

Probab=98.20  E-value=2.2e-06  Score=85.82  Aligned_cols=132  Identities=17%  Similarity=0.280  Sum_probs=103.7

Q ss_pred             CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCC
Q psy2160         396 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGE  475 (773)
Q Consensus       396 ~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~  475 (773)
                      .-.+.+|+.|.....-.++-..-+++.++.++|+..-  |..                 |                    
T Consensus       138 ~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~--gts-----------------w--------------------  178 (290)
T KOG0226|consen  138 PIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA--GTS-----------------W--------------------  178 (290)
T ss_pred             ccCcccccCcchhhhhhhhccccccccccCcceeecc--ccc-----------------c--------------------
Confidence            3467889999887777777666677777776655421  111                 0                    


Q ss_pred             CCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEE
Q psy2160         476 AYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC  555 (773)
Q Consensus       476 ~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV  555 (773)
                       .+|++            ..-.....+||.+-|..+++.+-|...|.+|-...        ..++++|..||+++||+||
T Consensus       179 -edPsl------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~--------~akviRdkRTgKSkgygfV  237 (290)
T KOG0226|consen  179 -EDPSL------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQ--------KAKVIRDKRTGKSKGYGFV  237 (290)
T ss_pred             -CCccc------------ccCccccceeecccccccccHHHHHHHHHhccchh--------hccccccccccccccceee
Confidence             01111            01123457899999999999999999999999988        7899999999999999999


Q ss_pred             EeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         556 TYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       556 ~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                      .|.++.++..|+..|||..++.++|.+.....
T Consensus       238 Sf~~pad~~rAmrem~gkyVgsrpiklRkS~w  269 (290)
T KOG0226|consen  238 SFRDPADYVRAMREMNGKYVGSRPIKLRKSEW  269 (290)
T ss_pred             eecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence            99999999999999999999999998876553

>KOG0153|consensus

Probab=98.16  E-value=5e-06  Score=86.80  Aligned_cols=76  Identities=17%  Similarity=0.357  Sum_probs=66.3

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH-HcCCceec
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS-ILDGYEIR  291 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~-~lng~~l~  291 (773)
                      ...++|||+||-..+++.+|+++|-+||.|..        |.+...      +|+|||+|.+.++|++|.. .+|...|.
T Consensus       226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--------i~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~  291 (377)
T KOG0153|consen  226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--------IRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN  291 (377)
T ss_pred             cceeEEEecccccchhHHHHHHHHhhcCCeee--------EEeecc------cccceeeehhhHHHHHHHHhhcceeeec
Confidence            37899999999889999999999999999998        888754      3599999999999998775 46766789


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |.+|.|.+...
T Consensus       292 G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  292 GFRLKIKWGRP  302 (377)
T ss_pred             ceEEEEEeCCC
Confidence            99999987664

>KOG1996|consensus

Probab=98.13  E-value=2.8e-06  Score=86.30  Aligned_cols=80  Identities=28%  Similarity=0.478  Sum_probs=69.3

Q ss_pred             CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC-----CCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160         349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH-----PEGVAQIFFKEPEAADACRELLNGRWF  423 (773)
Q Consensus       349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~-----~~G~afV~F~~~e~A~~Ai~~lng~~~  423 (773)
                      .++|.++||..+.+.++      ++..++.++|.+||.|.+|.|+.-.     ..--.||+|...++|.+|+-.|||++|
T Consensus       281 tkvlllrnmVg~gevd~------elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF  354 (378)
T KOG1996|consen  281 TKVLLLRNMVGAGEVDE------ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF  354 (378)
T ss_pred             hHHHHhhhhcCcccccH------HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee
Confidence            67899999999988776      4678999999999999999887432     233589999999999999999999999


Q ss_pred             CCeeEEEEecC
Q psy2160         424 GQRQITAETWD  434 (773)
Q Consensus       424 ~Gr~I~v~~~~  434 (773)
                      +||.+.+.++.
T Consensus       355 GGr~v~A~Fyn  365 (378)
T KOG1996|consen  355 GGRVVSACFYN  365 (378)
T ss_pred             cceeeeheecc
Confidence            99999998864

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=98.11  E-value=1.7e-05  Score=69.76  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec----
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR----  576 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~----  576 (773)
                      |+|.|+|||...|.+.|.+++.....=.+|      -+-|+.|..++.+.|||||.|.+++.|..-.+.++|....    
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yD------F~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s   75 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYD------FFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS   75 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcce------EEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence            799999999999999999999875433333      6889999998999999999999999999999999999876    


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      .+...|.+|..+
T Consensus        76 ~Kvc~i~yAriQ   87 (97)
T PF04059_consen   76 KKVCEISYARIQ   87 (97)
T ss_pred             CcEEEEehhHhh
Confidence            456688888743

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0116|consensus

Probab=98.08  E-value=7e-06  Score=90.61  Aligned_cols=81  Identities=22%  Similarity=0.299  Sum_probs=65.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|||+|||.+++.++|.++|+.||.|..        ..|....--++..+||||+|.+.+++..||.. +-..|.++
T Consensus       287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~--------~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~  357 (419)
T KOG0116|consen  287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKE--------GGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGR  357 (419)
T ss_pred             cccceEeecCCCCCCHHHHHHHHhhcccccc--------cceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCe
Confidence            4566999999999999999999999999998        45544331144449999999999999999984 56678899


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      ++.|+--...
T Consensus       358 kl~Veek~~~  367 (419)
T KOG0116|consen  358 KLNVEEKRPG  367 (419)
T ss_pred             eEEEEecccc
Confidence            9999765543

>KOG4209|consensus

Probab=98.08  E-value=4.4e-06  Score=85.70  Aligned_cols=82  Identities=26%  Similarity=0.363  Sum_probs=76.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....+.+||+|+...+|.+++...|+.||.|.        .+.|..|..+|.++|||||.|.+.+.+..|+. |||..|.
T Consensus        98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~--------~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~  168 (231)
T KOG4209|consen   98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGIN--------RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP  168 (231)
T ss_pred             ccCCceEEEeccccccccchhhheeeccCCcc--------ceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence            45678999999999999999999999999998        78999999988999999999999999999997 9999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.+..-
T Consensus       169 ~~~i~vt~~r~  179 (231)
T KOG4209|consen  169 GPAIEVTLKRT  179 (231)
T ss_pred             cccceeeeeee
Confidence            99999998763

>KOG4210|consensus

Probab=98.04  E-value=4.2e-06  Score=88.76  Aligned_cols=173  Identities=18%  Similarity=0.187  Sum_probs=123.2

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWF  423 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~  423 (773)
                      ...+.+++++-....  .         .+...++..+|.+..+.+..    ..+.|++++.|...+.+..|+........
T Consensus        87 ~~~~~f~g~~s~~~e--~---------~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~  155 (285)
T KOG4210|consen   87 SSSTFFVGELSENIE--E---------SEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL  155 (285)
T ss_pred             ccccccccccccchh--h---------ccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc
Confidence            456677777722222  1         34566777788666543321    34789999999999999999985444455


Q ss_pred             CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160         424 GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV  503 (773)
Q Consensus       424 ~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l  503 (773)
                      .++.+...+......+                                           +..     ...........++
T Consensus       156 ~~~~~~~dl~~~~~~~-------------------------------------------~~n-----~~~~~~~~~s~~~  187 (285)
T KOG4210|consen  156 DGNKGEKDLNTRRGLR-------------------------------------------PKN-----KLSRLSSGPSDTI  187 (285)
T ss_pred             ccccccCccccccccc-------------------------------------------ccc-----hhcccccCccccc
Confidence            6666555432211100                                           000     0000111233444


Q ss_pred             E-EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160         504 Y-VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  582 (773)
Q Consensus       504 ~-V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V  582 (773)
                      | |+||+.++++++|+.+|..+|.|.        .+++..++.+|.++|+|+|.|.....+.+|+.. ....+.|+++.+
T Consensus       188 ~~~~~~~f~~~~d~~~~~~~~~~~i~--------~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  258 (285)
T KOG4210|consen  188 FFVGELDFSLTRDDLKEHFVSSGEIT--------SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL  258 (285)
T ss_pred             eeecccccccchHHHhhhccCcCcce--------eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence            4 999999999999999999999999        899999999999999999999999999999977 888899999999


Q ss_pred             EEcccc
Q psy2160         583 ERAKFT  588 (773)
Q Consensus       583 ~~a~~~  588 (773)
                      ......
T Consensus       259 ~~~~~~  264 (285)
T KOG4210|consen  259 EEDEPR  264 (285)
T ss_pred             ccCCCC
Confidence            988753

>KOG0151|consensus

Probab=97.98  E-value=1.2e-05  Score=90.50  Aligned_cols=86  Identities=16%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             CccCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC---CCCcceEEEEEecChHHHHHHHHH
Q psy2160         208 WFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSI  284 (773)
Q Consensus       208 ~~~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~---tg~~kG~AfV~F~~~esA~~Al~~  284 (773)
                      ....+|..|+|||+||++.+++..|...|..||+|..        |+|+.-..   ..+.+-+|||.|-+..+|+.|++.
T Consensus       167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlas--------vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~  238 (877)
T KOG0151|consen  167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLAS--------VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE  238 (877)
T ss_pred             CCCCCCcccceeeecCCccccHHHHHHHhcccCcccc--------eeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence            3345889999999999999999999999999999999        88765432   234566899999999999999999


Q ss_pred             cCCceecCeEEEEEeec
Q psy2160         285 LDGYEIRGKKIKVERAK  301 (773)
Q Consensus       285 lng~~l~g~~I~V~~A~  301 (773)
                      |+|..+.++.|++.+++
T Consensus       239 lqg~iv~~~e~K~gWgk  255 (877)
T KOG0151|consen  239 LQGIIVMEYEMKLGWGK  255 (877)
T ss_pred             hcceeeeeeeeeecccc
Confidence            99999999999998875

>KOG0116|consensus

Probab=97.96  E-value=1.5e-05  Score=88.11  Aligned_cols=81  Identities=25%  Similarity=0.372  Sum_probs=66.1

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ...+|||+|||++++..+|.++|..||.|..+      .|.+.. +. +...+||||+|.+.++++.||. .+-..++|+
T Consensus       287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~------~I~vr~-~~-~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~  357 (419)
T KOG0116|consen  287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEG------GIQVRS-PG-GKNPCFGFVEFENAAAVQNAIE-ASPLEIGGR  357 (419)
T ss_pred             cccceEeecCCCCCCHHHHHHHHhhccccccc------ceEEec-cC-CCcCceEEEEEeecchhhhhhh-cCccccCCe
Confidence            34569999999999999999999999999954      455544 22 3344999999999999999996 457788999


Q ss_pred             EEEEEEcccc
Q psy2160         579 KIKVERAKFT  588 (773)
Q Consensus       579 ~i~V~~a~~~  588 (773)
                      +|.|+.-+..
T Consensus       358 kl~Veek~~~  367 (419)
T KOG0116|consen  358 KLNVEEKRPG  367 (419)
T ss_pred             eEEEEecccc
Confidence            9999976643

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.95  E-value=4.7e-05  Score=67.04  Aligned_cols=80  Identities=20%  Similarity=0.223  Sum_probs=67.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhc--CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec--
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR--  291 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~--G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~--  291 (773)
                      |||-|+|||...|.++|.+++...  |...-        +-|+.|..++.+.|||||.|.+++.|..-.+.++|..+.  
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF--------~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~   73 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDF--------FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF   73 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceE--------EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence            899999999999999999988753  44444        778899888999999999999999999999999999875  


Q ss_pred             --CeEEEEEeeccc
Q psy2160         292 --GKKIKVERAKFT  303 (773)
Q Consensus       292 --g~~I~V~~A~~~  303 (773)
                        .+...|.+|+.+
T Consensus        74 ~s~Kvc~i~yAriQ   87 (97)
T PF04059_consen   74 NSKKVCEISYARIQ   87 (97)
T ss_pred             CCCcEEEEehhHhh
Confidence              356677777643

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=97.94  E-value=5e-05  Score=63.73  Aligned_cols=72  Identities=24%  Similarity=0.270  Sum_probs=51.9

Q ss_pred             cEEEEecCCCccccccchhhHHHHHHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy2160         635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI  713 (773)
Q Consensus       635 ~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l  713 (773)
                      ..|+|.|||...+    +   ..|+.-|+.++..|| .|..|.      .|.|+|+|.+++.|.+|...|+|..+-|++|
T Consensus         3 s~L~V~NLP~~~d----~---~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI   69 (90)
T PF11608_consen    3 SLLYVSNLPTNKD----P---SSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI   69 (90)
T ss_dssp             EEEEEES--TTS-----H---HHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred             cEEEEecCCCCCC----H---HHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence            5799999986432    2   456789999999998 676653      3789999999999999999999999999999


Q ss_pred             EEEEec
Q psy2160         714 TAETWD  719 (773)
Q Consensus       714 ~v~~~d  719 (773)
                      .|+|..
T Consensus        70 ~v~~~~   75 (90)
T PF11608_consen   70 SVSFSP   75 (90)
T ss_dssp             EEESS-
T ss_pred             EEEEcC
Confidence            999953

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG0151|consensus

Probab=97.94  E-value=1.4e-05  Score=90.04  Aligned_cols=81  Identities=16%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecC---CCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP---YTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~---~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      +..++|||+||++.++++.|...|.+||+|.        +++|+--+   +..+.+.||||.|.+..+|++|+..|+|..
T Consensus       172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla--------svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i  243 (877)
T KOG0151|consen  172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLA--------SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII  243 (877)
T ss_pred             CcccceeeecCCccccHHHHHHHhcccCccc--------ceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence            4578999999999999999999999999999        78876433   224457899999999999999999999999


Q ss_pred             ecCeEEEEEEcc
Q psy2160         575 IRGKKIKVERAK  586 (773)
Q Consensus       575 i~g~~i~V~~a~  586 (773)
                      +.+..|++.|++
T Consensus       244 v~~~e~K~gWgk  255 (877)
T KOG0151|consen  244 VMEYEMKLGWGK  255 (877)
T ss_pred             eeeeeeeecccc
Confidence            999999999985

>KOG0112|consensus

Probab=97.94  E-value=6.8e-06  Score=95.02  Aligned_cols=164  Identities=16%  Similarity=0.180  Sum_probs=127.4

Q ss_pred             cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ....+.+||++||+..+++.+|+..|..+|.|.        .|.|-+-.. +.-.-||||.|.+...+-.|...+.+..|
T Consensus       368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve--------~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I  438 (975)
T KOG0112|consen  368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVE--------EVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLI  438 (975)
T ss_pred             chhhhhhhhhcCcccchhhhhhhhhhhhhcccc--------ccccccCCC-CcccchhhhhhhccccCcccchhhcCCcc
Confidence            345679999999999999999999999999998        455544322 33467999999999999999999999888


Q ss_pred             cCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhH
Q psy2160         576 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLI  655 (773)
Q Consensus       576 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~  655 (773)
                      ....+++.+...                                          .....+-+++..|..-..        
T Consensus       439 ~~g~~r~glG~~------------------------------------------kst~ttr~~sgglg~w~p--------  468 (975)
T KOG0112|consen  439 GNGTHRIGLGQP------------------------------------------KSTPTTRLQSGGLGPWSP--------  468 (975)
T ss_pred             ccCccccccccc------------------------------------------ccccceeeccCCCCCCCh--------
Confidence            755555554431                                          011245677777743211        


Q ss_pred             HHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEecCccc
Q psy2160         656 LEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG--QRQITAETWDGKTR  723 (773)
Q Consensus       656 ~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~--Gr~l~v~~~dgk~~  723 (773)
                         ...|..+|..||.|..|.+..+  .-+++|.|.++..|..|+..|-|..|+  .|+|.|.|......
T Consensus       469 ---~~~l~r~fd~fGpir~Idy~hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~  533 (975)
T KOG0112|consen  469 ---VSRLNREFDRFGPIRIIDYRHG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA  533 (975)
T ss_pred             ---HHHHHHHhhccCcceeeecccC--CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence               3788899999999998887554  478999999999999999999999997  57899988665443

>KOG2202|consensus

Probab=97.92  E-value=5.2e-06  Score=83.69  Aligned_cols=63  Identities=33%  Similarity=0.503  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHh-cCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         655 ILEYQQDLREECS-KCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       655 ~~~l~edl~~~f~-~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                      +.+.-++|..+|+ +||.|..+.|.+   .+-.|-++|+|...++|.+|+..|||+||+|++|++.|
T Consensus        78 ~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~  144 (260)
T KOG2202|consen   78 EDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL  144 (260)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence            4455688888888 999999998877   45578899999999999999999999999999999998

>KOG0112|consensus

Probab=97.86  E-value=1.1e-05  Score=93.31  Aligned_cols=159  Identities=19%  Similarity=0.247  Sum_probs=123.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+.+||++||+..+++.+|+..|..+|.|.+        |.|-+-.- +.-.-||||.|.+...+-.|...+-+..|...
T Consensus       371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~--------VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g  441 (975)
T KOG0112|consen  371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEE--------VDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG  441 (975)
T ss_pred             hhhhhhhcCcccchhhhhhhhhhhhhccccc--------cccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC
Confidence            7899999999999999999999999999988        77665544 55567999999999999999888887777554


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .+++....         +.                                 ....+-++++++ .++..          
T Consensus       442 ~~r~glG~---------~k---------------------------------st~ttr~~sggl-g~w~p----------  468 (975)
T KOG0112|consen  442 THRIGLGQ---------PK---------------------------------STPTTRLQSGGL-GPWSP----------  468 (975)
T ss_pred             cccccccc---------cc---------------------------------cccceeeccCCC-CCCCh----------
Confidence            44442211         11                                 223455777777 34332          


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCC
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGK  436 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~  436 (773)
                      +..+..+|..||.|..|.+.  |...|+||.+.+...++.|+..|.|..|+|  +.+.|.++...
T Consensus       469 ~~~l~r~fd~fGpir~Idy~--hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~  531 (975)
T KOG0112|consen  469 VSRLNREFDRFGPIRIIDYR--HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP  531 (975)
T ss_pred             HHHHHHHhhccCcceeeecc--cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence            26788999999999987653  558899999999999999999999999986  67888776543

>KOG4676|consensus

Probab=97.84  E-value=2.7e-06  Score=89.70  Aligned_cols=74  Identities=15%  Similarity=0.271  Sum_probs=61.2

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC---CCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~---tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      -.|-|.||.+++|.++++.+|.-.|.|.+        ++||.+.+   .......|||.|.+..+|..|-- |-++.|-+
T Consensus         8 ~vIqvanispsat~dqm~tlFg~lGkI~e--------lrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd   78 (479)
T KOG4676|consen    8 GVIQVANISPSATKDQMQTLFGNLGKIPE--------LRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD   78 (479)
T ss_pred             ceeeecccCchhhHHHHHHHHhhcccccc--------ccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence            37899999999999999999999999998        99998554   12346789999999999988864 77777777


Q ss_pred             eEEEEE
Q psy2160         293 KKIKVE  298 (773)
Q Consensus       293 ~~I~V~  298 (773)
                      +-|.|-
T Consensus        79 raliv~   84 (479)
T KOG4676|consen   79 RALIVR   84 (479)
T ss_pred             eeEEEE
Confidence            766663

>KOG4210|consensus

Probab=97.72  E-value=3.2e-05  Score=82.13  Aligned_cols=174  Identities=19%  Similarity=0.224  Sum_probs=126.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..+++|++++-..+.+.++..++..+|...        ...+........++|++.+.|...+.+..|+...-...+.++
T Consensus        87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~--------~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~  158 (285)
T KOG4210|consen   87 SSSTFFVGELSENIEESEDDNFSSEAGLRV--------DARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN  158 (285)
T ss_pred             ccccccccccccchhhccccccchhhcCcc--------cchhhhhccccccccceeeccccHHHHHHHHHhhhccccccc
Confidence            468999999999999999999999999876        455555555578999999999999999999964443455666


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      .+.......-.        ..+.              ...       ............++.|+...  ++         
T Consensus       159 ~~~~dl~~~~~--------~~~~--------------n~~-------~~~~~~~s~~~~~~~~~~f~--~~---------  198 (285)
T KOG4210|consen  159 KGEKDLNTRRG--------LRPK--------------NKL-------SRLSSGPSDTIFFVGELDFS--LT---------  198 (285)
T ss_pred             cccCccccccc--------cccc--------------chh-------cccccCccccceeecccccc--cc---------
Confidence            55554443110        0000              000       00011122345558888655  33         


Q ss_pred             HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      +++|..+|..+|.|..|.++.    +...|+++|.|.....+..|+.. .++.++|+.+.+.+-+..
T Consensus       199 ~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  264 (285)
T KOG4210|consen  199 RDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR  264 (285)
T ss_pred             hHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence            378889999999999998876    55678999999999999999998 899999999999885544

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=97.70  E-value=0.00016  Score=60.83  Aligned_cols=70  Identities=24%  Similarity=0.438  Sum_probs=48.5

Q ss_pred             CCEEEEcCCCCCCCHHH----HHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         500 NTKVYVSNLPLDLTQEE----FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~----L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      .+.|+|.|||.+.+...    |+.++..||.-.         +.|.        .+.|+|.|.+++.|.+|...|+|..+
T Consensus         2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---------l~v~--------~~tAilrF~~~~~A~RA~KRmegEdV   64 (90)
T PF11608_consen    2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---------LSVS--------GGTAILRFPNQEFAERAQKRMEGEDV   64 (90)
T ss_dssp             SEEEEEES--TTS-HHHHHHHHHHHHHTTT--E---------EE----------TT-EEEEESSHHHHHHHHHHHTT--S
T ss_pred             ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---------EEEe--------CCEEEEEeCCHHHHHHHHHhhccccc
Confidence            35799999999988655    566677898754         3332        46899999999999999999999999


Q ss_pred             cCeEEEEEEcc
Q psy2160         576 RGKKIKVERAK  586 (773)
Q Consensus       576 ~g~~i~V~~a~  586 (773)
                      .|++|.|++..
T Consensus        65 fG~kI~v~~~~   75 (90)
T PF11608_consen   65 FGNKISVSFSP   75 (90)
T ss_dssp             SSS--EEESS-
T ss_pred             ccceEEEEEcC
Confidence            99999999875

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG4660|consensus

Probab=97.67  E-value=2.8e-05  Score=86.09  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=63.2

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ....+|+|-|||.+|+.++|+.+|+.||.|.        .|+.-+.     .+|..||+|-+.-+|+.|++.|++.+|.|
T Consensus        73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir--------~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~  139 (549)
T KOG4660|consen   73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR--------EIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAG  139 (549)
T ss_pred             CccceEEEEecCCcCCHHHHHHHHHhhcchh--------hhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence            4568999999999999999999999999998        3554433     47899999999999999999999999999


Q ss_pred             eEEE
Q psy2160         578 KKIK  581 (773)
Q Consensus       578 ~~i~  581 (773)
                      +.|.
T Consensus       140 ~~~k  143 (549)
T KOG4660|consen  140 KRIK  143 (549)
T ss_pred             hhhc
Confidence            8877

>KOG2193|consensus

Probab=97.31  E-value=5.1e-05  Score=80.85  Aligned_cols=151  Identities=18%  Similarity=0.262  Sum_probs=114.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc-eecCeE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-EIRGKK  579 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~-~i~g~~  579 (773)
                      +.+|++||.+.++..+|..+|...-.-.        +-.++.      -.|||||.+.+..-|.+|++.++|. .+.|.+
T Consensus         2 nklyignL~p~~~psdl~svfg~ak~~~--------~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr   67 (584)
T KOG2193|consen    2 NKLYIGNLSPQVTPSDLESVFGDAKIPG--------SGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKR   67 (584)
T ss_pred             CcccccccCCCCChHHHHHHhccccCCC--------Ccceee------ecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence            5799999999999999999998541111        011221      2689999999999999999999997 467999


Q ss_pred             EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160         580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ  659 (773)
Q Consensus       580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~  659 (773)
                      +.|......             +.+                             ++.+.|+|++..  +.         .
T Consensus        68 ~e~~~sv~k-------------kqr-----------------------------srk~Qirnippq--l~---------w   94 (584)
T KOG2193|consen   68 QEVEHSVPK-------------KQR-----------------------------SRKIQIRNIPPQ--LQ---------W   94 (584)
T ss_pred             eeccchhhH-------------HHH-----------------------------hhhhhHhcCCHH--HH---------H
Confidence            988876521             111                             244778888644  22         3


Q ss_pred             HHHHHHHhcCCceeEEEecC-CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q psy2160         660 QDLREECSKCGHVKKVVLHD-KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW  718 (773)
Q Consensus       660 edl~~~f~~fG~V~~v~i~~-~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~  718 (773)
                      +-|..+...||.|.++.... .....++-|.|.+.+.+..||..|||-.|....+.+.|-
T Consensus        95 evld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi  154 (584)
T KOG2193|consen   95 EVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI  154 (584)
T ss_pred             HHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence            66777888999999986543 222456778899999999999999999999999998883

>KOG2202|consensus

Probab=97.31  E-value=8.6e-05  Score=75.09  Aligned_cols=62  Identities=34%  Similarity=0.531  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhh-ccCCEEEEEeeCC---CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEec
Q psy2160         372 EYQQDLREECS-KCGHVKKVVLHDK---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW  433 (773)
Q Consensus       372 ei~edL~e~f~-k~G~V~~V~i~d~---~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~  433 (773)
                      +.-++|..+|+ +||+|..+.+.++   |-.|-+||.|...++|++|+..|||++|+|++|.+.+.
T Consensus        80 efyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~  145 (260)
T KOG2202|consen   80 EFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS  145 (260)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence            33478888888 8999999987765   45788999999999999999999999999999999864

>KOG4676|consensus

Probab=97.11  E-value=0.0012  Score=70.17  Aligned_cols=188  Identities=14%  Similarity=0.165  Sum_probs=114.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC---CCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---KDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t---g~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...|.|.||.+.+|.++++.+|.-.|.|.        .++||.+...   ......|||.|.+..++..|. +|.++.|-
T Consensus         7 ~~vIqvanispsat~dqm~tlFg~lGkI~--------elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfv   77 (479)
T KOG4676|consen    7 LGVIQVANISPSATKDQMQTLFGNLGKIP--------ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFV   77 (479)
T ss_pred             CceeeecccCchhhHHHHHHHHhhccccc--------cccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceee
Confidence            34899999999999999999999999998        6888876531   123457999999999999997 79999999


Q ss_pred             CeEEEEEEccccccC----------CcCCCCCCchhhh---HHHHHHHHHHhhhccCCCCccccC----CCCCCCcEEEE
Q psy2160         577 GKKIKVERAKFTMKG----------EAYDPKLKPKKKR---KKDLEKLKKAQEKLFDWRPDKMRG----ERSKNESVIIV  639 (773)
Q Consensus       577 g~~i~V~~a~~~~~~----------~~~~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i  639 (773)
                      ++.|.|-++-.....          .+..|.+.+-...   ...+..+ .+...+.--.|...+.    ....-.+++++
T Consensus        78 draliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~-nh~p~ailktP~Lp~~~~A~kleeirRt~~v  156 (479)
T KOG4676|consen   78 DRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKI-NHSPNAILKTPELPPQAAAKKLEEIRRTREV  156 (479)
T ss_pred             eeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccc-cCCccceecCCCCChHhhhhhhHHHHhhhhh
Confidence            999888876532111          0111110000000   0000000 0000000000000000    00001245666


Q ss_pred             ecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC
Q psy2160         640 KNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG  709 (773)
Q Consensus       640 kNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~  709 (773)
                      .+|.....           ..++-+.|..+|.|...++..+...-.+.|.|....+..+|+.. +|+.|.
T Consensus       157 ~sl~~~~~-----------l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k  214 (479)
T KOG4676|consen  157 QSLISAAI-----------LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK  214 (479)
T ss_pred             hcchhhhc-----------chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence            66644321           26777889999999877766655556677999999888888876 677775

>KOG2314|consensus

Probab=97.10  E-value=0.0014  Score=72.72  Aligned_cols=109  Identities=14%  Similarity=0.199  Sum_probs=81.8

Q ss_pred             CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeC-
Q psy2160         634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG-  709 (773)
Q Consensus       634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-  709 (773)
                      ..+|+|-|+|--     .+..+..|+.-|...|+++|.|.++.++.   +...|++|+.|.+..+|..|++.|||..|+ 
T Consensus        58 D~vVvv~g~PvV-----~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk  132 (698)
T KOG2314|consen   58 DSVVVVDGAPVV-----GPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK  132 (698)
T ss_pred             ceEEEECCCccc-----ChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence            579999999753     23347888999999999999999998873   557899999999999999999999999986 


Q ss_pred             CeEEEEEEecCcccccc-----cccHHHHHHHHHHHHHHHhhh
Q psy2160         710 QRQITAETWDGKTRYKI-----QETAEEREARLKKWETFLEEE  747 (773)
Q Consensus       710 Gr~l~v~~~dgk~~~~~-----~~~~e~~~~Rl~~~~~~le~~  747 (773)
                      .+...|..+.--..|..     .+-+++.-.-......||.+.
T Consensus       133 nHtf~v~~f~d~eky~s~~dew~~pe~q~fk~~~~L~~WL~d~  175 (698)
T KOG2314|consen  133 NHTFFVRLFKDFEKYESISDEWREPEKQTFKDSSDLRSWLMDD  175 (698)
T ss_pred             cceEEeehhhhHHHhcCCccccCCcccccccchHHHHHHHhCc
Confidence            78888876544333331     112333334455667777654

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=97.02  E-value=0.0013  Score=59.30  Aligned_cols=70  Identities=26%  Similarity=0.365  Sum_probs=44.4

Q ss_pred             cEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCc-----eeC
Q psy2160         635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR-----WFG  709 (773)
Q Consensus       635 ~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr-----~f~  709 (773)
                      .+|.|.++..+.  .         +++|++.|+.||.|..|.+..+.  ..|+|+|.++++|..|+..+.-.     .+.
T Consensus         2 ~il~~~g~~~~~--~---------re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~   68 (105)
T PF08777_consen    2 CILKFSGLGEPT--S---------REDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIK   68 (105)
T ss_dssp             -EEEEEE--SS-------------HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TT
T ss_pred             eEEEEecCCCCc--C---------HHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhccCCceEEc
Confidence            578888875552  2         49999999999999999887765  67889999999999999988654     556


Q ss_pred             CeEEEEEE
Q psy2160         710 QRQITAET  717 (773)
Q Consensus       710 Gr~l~v~~  717 (773)
                      |..+.+..
T Consensus        69 ~~~~~~~v   76 (105)
T PF08777_consen   69 GKEVTLEV   76 (105)
T ss_dssp             SSSEEEE-
T ss_pred             CceEEEEE
Confidence            66666655

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.98  E-value=0.0023  Score=66.69  Aligned_cols=60  Identities=27%  Similarity=0.457  Sum_probs=50.2

Q ss_pred             HHHHhcCCceeEEEecCCCC-----Cc--EEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcccc
Q psy2160         663 REECSKCGHVKKVVLHDKHP-----EG--VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRY  724 (773)
Q Consensus       663 ~~~f~~fG~V~~v~i~~~~~-----~G--~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~  724 (773)
                      .++|.+||.|.+|.|-++.+     .+  -++|.|.+.++|.+||...+|..++||.|++.|  |-|+|
T Consensus       138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatY--GTTKY  204 (480)
T COG5175         138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATY--GTTKY  204 (480)
T ss_pred             hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeec--CchHH
Confidence            56899999999998865321     22  259999999999999999999999999999998  55554

>KOG2193|consensus

Probab=96.95  E-value=0.00013  Score=77.79  Aligned_cols=152  Identities=18%  Similarity=0.247  Sum_probs=110.0

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-eecCeE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-EIRGKK  294 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~-~l~g~~  294 (773)
                      +.+|++||.+.++.++|..+|.....-..    |   -.|+       -.|||||.+.+...|.+|++.++|. .+.|.+
T Consensus         2 nklyignL~p~~~psdl~svfg~ak~~~~----g---~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr   67 (584)
T KOG2193|consen    2 NKLYIGNLSPQVTPSDLESVFGDAKIPGS----G---QFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKR   67 (584)
T ss_pred             CcccccccCCCCChHHHHHHhccccCCCC----c---ceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence            57899999999999999999985422111    0   1222       1579999999999999999999998 478999


Q ss_pred             EEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHH
Q psy2160         295 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ  374 (773)
Q Consensus       295 I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~  374 (773)
                      +.|..+..+             +                             ..++.+.|+|++  ..+.         .
T Consensus        68 ~e~~~sv~k-------------k-----------------------------qrsrk~Qirnip--pql~---------w   94 (584)
T KOG2193|consen   68 QEVEHSVPK-------------K-----------------------------QRSRKIQIRNIP--PQLQ---------W   94 (584)
T ss_pred             eeccchhhH-------------H-----------------------------HHhhhhhHhcCC--HHHH---------H
Confidence            999654311             0                             002336677773  2211         1


Q ss_pred             HHHHHHhhccCCEEEEEeeC-CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160         375 QDLREECSKCGHVKKVVLHD-KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  434 (773)
Q Consensus       375 edL~e~f~k~G~V~~V~i~d-~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~  434 (773)
                      +-+..+...||.|..|.... .....+.-|.|...+.+..|+..++|..+....+.+.|..
T Consensus        95 evld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP  155 (584)
T KOG2193|consen   95 EVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP  155 (584)
T ss_pred             HHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence            55677888999999885432 3334556678999999999999999999988888887653

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=96.83  E-value=0.0059  Score=54.26  Aligned_cols=68  Identities=13%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             cEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEE-------------ecCCCCCcEEEEEecCHHHHHHHHH
Q psy2160         635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-------------LHDKHPEGVAQIFFKEPEAADACRE  701 (773)
Q Consensus       635 ~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~-------------i~~~~~~G~afV~F~~~e~A~~Ai~  701 (773)
                      +-|.|.+.|.. .           ...|..+|++||.|....             ++.  ....+.|+|.++.+|.+|++
T Consensus         7 ~wVtVFGfp~~-~-----------~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~   72 (100)
T PF05172_consen    7 TWVTVFGFPPS-A-----------SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQ   72 (100)
T ss_dssp             CEEEEE---GG-G-----------HHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHT
T ss_pred             eEEEEEccCHH-H-----------HHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHH
Confidence            55777775432 1           278999999999998764             222  34689999999999999999


Q ss_pred             HhCCceeCCeEEE-EEE
Q psy2160         702 LLNGRWFGQRQIT-AET  717 (773)
Q Consensus       702 ~lnGr~f~Gr~l~-v~~  717 (773)
                      . ||+.|+|..|. |-+
T Consensus        73 ~-NG~i~~g~~mvGV~~   88 (100)
T PF05172_consen   73 K-NGTIFSGSLMVGVKP   88 (100)
T ss_dssp             T-TTEEETTCEEEEEEE
T ss_pred             h-CCeEEcCcEEEEEEE
Confidence            7 99999987665 444

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=96.78  E-value=0.0016  Score=58.58  Aligned_cols=69  Identities=22%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-----ee
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-----EI  290 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~-----~l  290 (773)
                      +-|+|.|++..++-++|+++|+.||.|..        |-+.+    |..  .|||.|.++++|..|+..+...     .+
T Consensus         2 ~il~~~g~~~~~~re~iK~~f~~~g~V~y--------VD~~~----G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i   67 (105)
T PF08777_consen    2 CILKFSGLGEPTSREDIKEAFSQFGEVAY--------VDFSR----GDT--EGYVRFKTPEAAQKALEKLKEANDGKLKI   67 (105)
T ss_dssp             -EEEEEE--SS--HHHHHHHT-SS--EEE--------EE--T----T-S--EEEEEESS---HHHHHHHHHHTTTS-B-T
T ss_pred             eEEEEecCCCCcCHHHHHHHHHhcCCcce--------EEecC----CCC--EEEEEECCcchHHHHHHHHHhccCCceEE
Confidence            57899999999999999999999998886        66654    332  6899999999999999876544     34


Q ss_pred             cCeEEEEE
Q psy2160         291 RGKKIKVE  298 (773)
Q Consensus       291 ~g~~I~V~  298 (773)
                      .+..+.++
T Consensus        68 ~~~~~~~~   75 (105)
T PF08777_consen   68 KGKEVTLE   75 (105)
T ss_dssp             TSSSEEEE
T ss_pred             cCceEEEE
Confidence            55555553

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG2314|consensus

Probab=96.66  E-value=0.0045  Score=68.83  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             CccEEEEcCCCCC--CCH----HHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPLD--LTQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~--~te----~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      -.+.|+|.|+|.-  +..    .-|..+|+++|.|..        +.++.+.. |..+||.|++|.+..+|..|++.|||
T Consensus        57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--------~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G  127 (698)
T KOG2314|consen   57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--------MYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNG  127 (698)
T ss_pred             cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--------eeeccCcc-CCeeeEEEEEecChhhHHHHHHhccc
Confidence            4588999999953  222    335679999999987        77888888 77999999999999999999999999


Q ss_pred             cee-cCeEEEEEe
Q psy2160         288 YEI-RGKKIKVER  299 (773)
Q Consensus       288 ~~l-~g~~I~V~~  299 (773)
                      ..| ..++..|..
T Consensus       128 ~~ldknHtf~v~~  140 (698)
T KOG2314|consen  128 KRLDKNHTFFVRL  140 (698)
T ss_pred             ceecccceEEeeh
Confidence            988 467888754

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.65  E-value=0.003  Score=65.90  Aligned_cols=80  Identities=24%  Similarity=0.354  Sum_probs=62.2

Q ss_pred             CccEEEEcCCCCCCCHHHH------HHHHhhcCcccccccCCceeEEEEecCCCCCc-ceEE--EEEecChHHHHHHHHH
Q psy2160         214 ESTKVYVSNLPLDLTQEEF------VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF-KGDA--LCTYIKKESVDLALSI  284 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el------~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~-kG~A--fV~F~~~esA~~Al~~  284 (773)
                      +..-|||-+||+.+-.+++      .++|.+||.|..        |.+-+...+..+ .+.+  ||+|.+.++|..||..
T Consensus       113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K--------IvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~  184 (480)
T COG5175         113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK--------IVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE  184 (480)
T ss_pred             ecceeEEecCCCCCCcccccccccchhhhhhccceeE--------EEecccccccccccccceEEEEecchHHHHHHHHH
Confidence            5678999999998877773      479999999976        555443311121 2334  9999999999999999


Q ss_pred             cCCceecCeEEEEEeec
Q psy2160         285 LDGYEIRGKKIKVERAK  301 (773)
Q Consensus       285 lng~~l~g~~I~V~~A~  301 (773)
                      .||+.+.||-|+..+..
T Consensus       185 vDgs~~DGr~lkatYGT  201 (480)
T COG5175         185 VDGSLLDGRVLKATYGT  201 (480)
T ss_pred             hccccccCceEeeecCc
Confidence            99999999999997654

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=96.45  E-value=0.0046  Score=48.32  Aligned_cols=53  Identities=26%  Similarity=0.347  Sum_probs=41.4

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHH
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL  282 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al  282 (773)
                      ++.|-|+|.|++..+ .+..+|..||.|..        +.+...      .-.++|.|.+..+|+.||
T Consensus         1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~--------~~~~~~------~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen    1 STWISVSGFPPDLAE-EVLEHFASFGEIVD--------IYVPES------TNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             CcEEEEEeECchHHH-HHHHHHHhcCCEEE--------EEcCCC------CcEEEEEECCHHHHHhhC
Confidence            367889999987764 45558999999987        555422      238999999999999985

>KOG0115|consensus

Probab=96.45  E-value=0.0075  Score=61.21  Aligned_cols=77  Identities=16%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec----
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR----  576 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~----  576 (773)
                      ..|||.||+.-++.+.+..-|+.||.|.        +..++.|.. |++.+-++|.|...-.|..|+..++..-|.    
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e--------~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~  102 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIE--------RAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTG  102 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccc--------hheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCC
Confidence            6899999999999999999999999998        455555654 889999999999999999999888543333    


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      +++..|....
T Consensus       103 ~~p~~VeP~e  112 (275)
T KOG0115|consen  103 GRPVGVEPME  112 (275)
T ss_pred             CCccCCChhh
Confidence            5666666544

>KOG3152|consensus

Probab=96.42  E-value=0.0021  Score=65.00  Aligned_cols=72  Identities=21%  Similarity=0.320  Sum_probs=60.1

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC--------CCCcc----eEEEEeCChHHHHHH
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT--------KDFKG----DALCTYIKKESVDLA  566 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t--------g~~kG----~afV~f~~~e~A~~A  566 (773)
                      ..-.||++|||+.+....|+++|+.||.|-        +|.|.....+        |.+++    -|.|+|.+...|...
T Consensus        73 k~GVvylS~IPp~m~~~rlReil~~yGeVG--------RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i  144 (278)
T KOG3152|consen   73 KTGVVYLSNIPPYMDPVRLREILSQYGEVG--------RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI  144 (278)
T ss_pred             cceEEEeccCCCccCHHHHHHHHHhccccc--------eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence            346899999999999999999999999997        6776655433        22333    378999999999999


Q ss_pred             HHHhCCceecCe
Q psy2160         567 LSILDGYEIRGK  578 (773)
Q Consensus       567 i~~lng~~i~g~  578 (773)
                      ...|||..|+|+
T Consensus       145 Ae~Lnn~~Iggk  156 (278)
T KOG3152|consen  145 AELLNNTPIGGK  156 (278)
T ss_pred             HHHhCCCccCCC
Confidence            999999999985

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=96.21  E-value=0.037  Score=52.19  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR  711 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr  711 (773)
                      ++..+|+|+=+...  -+++..|=..|..+|.+.|..||.|.-|.+..    +...|.|.+.++|.+|+. |+|..++|+
T Consensus        25 PpDaTVvVsv~~~~--~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g~   97 (146)
T PF08952_consen   25 PPDATVVVSVDSPS--EDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNGR   97 (146)
T ss_dssp             -TT-EEEEEECS-S--CCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred             CCCceEEEEecCCC--ccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECCE
Confidence            34566777655311  12334444567789999999999998887766    569999999999999887 699999999


Q ss_pred             EEEEEE
Q psy2160         712 QITAET  717 (773)
Q Consensus       712 ~l~v~~  717 (773)
                      .|.|..
T Consensus        98 ~l~i~L  103 (146)
T PF08952_consen   98 TLKIRL  103 (146)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999987

; PDB: 1UFW_A 2DNR_A.

>KOG3152|consensus

Probab=96.19  E-value=0.004  Score=63.10  Aligned_cols=73  Identities=22%  Similarity=0.335  Sum_probs=61.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCC--------CCcce----EEEEEecChHHHHHH
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT--------KDFKG----DALCTYIKKESVDLA  281 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~t--------g~~kG----~AfV~F~~~esA~~A  281 (773)
                      ..--||+++||+.+...-|+++|+.||.|-.        |.|-...++        |.+++    -|.|+|.+...|...
T Consensus        73 k~GVvylS~IPp~m~~~rlReil~~yGeVGR--------vylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i  144 (278)
T KOG3152|consen   73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGR--------VYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI  144 (278)
T ss_pred             cceEEEeccCCCccCHHHHHHHHHhccccce--------EEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence            4467999999999999999999999999987        777766554        33333    477999999999999


Q ss_pred             HHHcCCceecCeE
Q psy2160         282 LSILDGYEIRGKK  294 (773)
Q Consensus       282 l~~lng~~l~g~~  294 (773)
                      ..+||+..|.|++
T Consensus       145 Ae~Lnn~~Iggkk  157 (278)
T KOG3152|consen  145 AELLNNTPIGGKK  157 (278)
T ss_pred             HHHhCCCccCCCC
Confidence            9999999999965

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=96.02  E-value=0.019  Score=44.79  Aligned_cols=40  Identities=10%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             HHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHH
Q psy2160         659 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACR  700 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai  700 (773)
                      .+.|+..|..||.|..+.+....  -.++|+|.+..+|.+|+
T Consensus        14 ~~~vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   14 AEEVLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence            47889999999999999887433  58999999999999985

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=96.02  E-value=0.025  Score=50.32  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=51.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEec-------CCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-------PYTKDFKGDALCTYIKKESVDLALSILD  286 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d-------~~tg~~kG~AfV~F~~~esA~~Al~~ln  286 (773)
                      ..+.|.|=|.|+. ....|.++|++||.|.+.       ..+.++       +. ........|+|.++.+|.+||+ .|
T Consensus         5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~-------~~~~~~~~~~~~~~~-~~~~NWi~I~Y~~~~~A~rAL~-~N   74 (100)
T PF05172_consen    5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEH-------FEVLRSSSGINPYPI-PSGGNWIHITYDNPLSAQRALQ-KN   74 (100)
T ss_dssp             GCCEEEEE---GG-GHHHHHHHHHCCS-EECE-------EGGG----------E--CCTTEEEEEESSHHHHHHHHT-TT
T ss_pred             CCeEEEEEccCHH-HHHHHHHHHHhcceEEEe-------ecccccccccccccC-CCCCCEEEEECCCHHHHHHHHH-hC
Confidence            4577899999988 667788899999999883       101111       00 1123378999999999999998 89


Q ss_pred             CceecCeEEE-EEee
Q psy2160         287 GYEIRGKKIK-VERA  300 (773)
Q Consensus       287 g~~l~g~~I~-V~~A  300 (773)
                      |..|.|.-|- |.+.
T Consensus        75 G~i~~g~~mvGV~~~   89 (100)
T PF05172_consen   75 GTIFSGSLMVGVKPC   89 (100)
T ss_dssp             TEEETTCEEEEEEE-
T ss_pred             CeEEcCcEEEEEEEc
Confidence            9999986554 5554

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG4849|consensus

Probab=95.87  E-value=0.0084  Score=62.87  Aligned_cols=76  Identities=25%  Similarity=0.347  Sum_probs=67.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc--ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL--VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~--I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ..-.+||+||-+.+|.++|.+.....|.  +.+        ++++.+...|.+||||+|...+..++.+-+++|-...|.
T Consensus        79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d--------mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH  150 (498)
T KOG4849|consen   79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFAD--------MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH  150 (498)
T ss_pred             ceEEEEecceeEEeccHHHHHHHHhhhHHHHhh--------hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence            5678999999999999999999988775  444        888888877999999999999999999999999999999


Q ss_pred             CeEEEE
Q psy2160         292 GKKIKV  297 (773)
Q Consensus       292 g~~I~V  297 (773)
                      |..-.|
T Consensus       151 GQ~P~V  156 (498)
T KOG4849|consen  151 GQSPTV  156 (498)
T ss_pred             CCCCee
Confidence            966555

>KOG4849|consensus

Probab=95.86  E-value=0.012  Score=61.77  Aligned_cols=81  Identities=23%  Similarity=0.293  Sum_probs=69.8

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      ..++||+||-+-+|+++|.+.....|.-...      .++++-++.+|+++|||+|...+..++.+.++.|-...|+|..
T Consensus        80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~------dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~  153 (498)
T KOG4849|consen   80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFA------DMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS  153 (498)
T ss_pred             eEEEEecceeEEeccHHHHHHHHhhhHHHHh------hhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence            4689999999999999999999988864321      5888889888999999999999999999999999999999986


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      -.|....
T Consensus       154 P~V~~~N  160 (498)
T KOG4849|consen  154 PTVLSYN  160 (498)
T ss_pred             Ceeeccc
Confidence            6665443

>KOG0115|consensus

Probab=95.23  E-value=0.021  Score=58.05  Aligned_cols=66  Identities=14%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      ..|||.||+.-++-+.|.+.|+.||.|..        -.++.|.. |+..|-++|.|.+.-.|..|+..+..--|
T Consensus        32 a~l~V~nl~~~~sndll~~~f~~fg~~e~--------av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~   97 (275)
T KOG0115|consen   32 AELYVVNLMQGASNDLLEQAFRRFGPIER--------AVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGF   97 (275)
T ss_pred             ceEEEEecchhhhhHHHHHhhhhcCccch--------heeeeccc-ccccccchhhhhcchhHHHHHHHhccCcc
Confidence            89999999999999999999999999998        67777877 99999999999999999999998754444

>KOG1855|consensus

Probab=95.22  E-value=0.021  Score=61.90  Aligned_cols=67  Identities=25%  Similarity=0.320  Sum_probs=56.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEec---CC--CCCc--------ceEEEEEecChHHHHH
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD---PY--TKDF--------KGDALCTYIKKESVDL  280 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d---~~--tg~~--------kG~AfV~F~~~esA~~  280 (773)
                      +..+|.+-|||.+-..+-|.++|+.||.|..        |+|+.-   +.  .|.+        +-+|||+|...+.|.+
T Consensus       230 ~srtivaenLP~Dh~~enl~kiFg~~G~Iks--------IRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K  301 (484)
T KOG1855|consen  230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKS--------IRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK  301 (484)
T ss_pred             ccceEEEecCCcchHHHHHHHHhhcccceee--------eeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence            8899999999999999999999999999998        888765   21  1222        4579999999999999


Q ss_pred             HHHHcCCc
Q psy2160         281 ALSILDGY  288 (773)
Q Consensus       281 Al~~lng~  288 (773)
                      |.++|+..
T Consensus       302 A~e~~~~e  309 (484)
T KOG1855|consen  302 ARELLNPE  309 (484)
T ss_pred             HHHhhchh
Confidence            99988544

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=95.03  E-value=0.15  Score=48.27  Aligned_cols=78  Identities=18%  Similarity=0.225  Sum_probs=56.4

Q ss_pred             CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeE
Q psy2160         349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI  428 (773)
Q Consensus       349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I  428 (773)
                      ..+|+|.-+. +. .+++..+-..+..+|.+.|..||.|.-|++..    +..+|.|.+-++|.+|+. |+|..++|+.|
T Consensus        27 DaTVvVsv~~-~~-~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g~~l   99 (146)
T PF08952_consen   27 DATVVVSVDS-PS-EDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNGRTL   99 (146)
T ss_dssp             T-EEEEEECS--S-CCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred             CceEEEEecC-CC-ccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence            5567776662 11 12223333455678999999999999887764    469999999999999988 79999999999


Q ss_pred             EEEec
Q psy2160         429 TAETW  433 (773)
Q Consensus       429 ~v~~~  433 (773)
                      .+.+.
T Consensus       100 ~i~LK  104 (146)
T PF08952_consen  100 KIRLK  104 (146)
T ss_dssp             EEEE-
T ss_pred             EEEeC
Confidence            99873

; PDB: 1UFW_A 2DNR_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=94.94  E-value=0.09  Score=48.93  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160         660 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET  717 (773)
Q Consensus       660 edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~  717 (773)
                      ..|....+.||.|.+|.++-.   --|.|.|.+..+|-+|+.++.. .-.|+.+.|+.
T Consensus       105 ~sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW  158 (166)
T PF15023_consen  105 KSVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW  158 (166)
T ss_pred             HHHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence            455666789999999998764   3699999999999999999877 44678888865

>KOG1855|consensus

Probab=94.60  E-value=0.024  Score=61.38  Aligned_cols=70  Identities=23%  Similarity=0.287  Sum_probs=56.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEec---CC--CCCC--------cceEEEEeCChHHHH
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD---PY--TKDF--------KGDALCTYIKKESVD  564 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d---~~--tg~~--------kG~afV~f~~~e~A~  564 (773)
                      .+.++|.+-|||.+-.-+.|.++|+.||.|.        .|+|..-   +.  .|.+        +-+|+|+|...+.|.
T Consensus       229 l~srtivaenLP~Dh~~enl~kiFg~~G~Ik--------sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~  300 (484)
T KOG1855|consen  229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIK--------SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR  300 (484)
T ss_pred             cccceEEEecCCcchHHHHHHHHhhccccee--------eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence            4678999999999999999999999999999        7888654   22  1222        457999999999999


Q ss_pred             HHHHHhCCcee
Q psy2160         565 LALSILDGYEI  575 (773)
Q Consensus       565 ~Ai~~lng~~i  575 (773)
                      +|.+.|+...-
T Consensus       301 KA~e~~~~e~~  311 (484)
T KOG1855|consen  301 KARELLNPEQN  311 (484)
T ss_pred             HHHHhhchhhh
Confidence            99988865443

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=94.52  E-value=0.086  Score=44.69  Aligned_cols=56  Identities=9%  Similarity=0.307  Sum_probs=44.3

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ....||+ +|...-..+|.++|+.||.|.         |..+-|-       -|||...+.+.|..|+..+.-
T Consensus         9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen    9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             CCEEEEE---TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred             ceEEEEe-CchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence            4566666 999999999999999999996         8877553       599999999999999988863

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG2416|consensus

Probab=94.35  E-value=0.046  Score=61.45  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=62.4

Q ss_pred             CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHh-cCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCc
Q psy2160         628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS-KCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR  706 (773)
Q Consensus       628 ~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~-~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr  706 (773)
                      +.+...+.+|+|.||..|  |+.         ..|+.+.. .+|.|...+|..-.  --|||.|.+.++|..-+.+|||-
T Consensus       438 PsR~~~SnvlhI~nLvRP--FTl---------gQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV  504 (718)
T KOG2416|consen  438 PSRKEPSNVLHIDNLVRP--FTL---------GQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNV  504 (718)
T ss_pred             CCCCCccceEeeeccccc--chH---------HHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhcc
Confidence            345567899999999888  543         77888887 57788877775522  45999999999999999999998


Q ss_pred             ee---CCeEEEEEE
Q psy2160         707 WF---GQRQITAET  717 (773)
Q Consensus       707 ~f---~Gr~l~v~~  717 (773)
                      ..   +++.|.|.|
T Consensus       505 ~WP~sNPK~L~adf  518 (718)
T KOG2416|consen  505 QWPPSNPKHLIADF  518 (718)
T ss_pred             ccCCCCCceeEeee
Confidence            76   689999988

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=94.34  E-value=0.098  Score=51.97  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEEec
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLN--GRWFGQRQITAETWD  719 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~ln--Gr~f~Gr~l~v~~~d  719 (773)
                      +++..|+++|..|+.+..+.+.+.-  +.+.|.|.+.++|..|...|+  +..|.|..|.|+|..
T Consensus         7 ~~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~   69 (184)
T PF04847_consen    7 DNLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ   69 (184)
T ss_dssp             --HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred             hhHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence            3468999999999999888777744  779999999999999999999  999999999999863

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=94.29  E-value=0.22  Score=40.03  Aligned_cols=55  Identities=16%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhc----CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKC----GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL  570 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l  570 (773)
                      ....|+|+|+. +++.++|+.+|..|    ++.         +|..+-|.       -|=|.|.+.+.|.+|+..|
T Consensus         4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~---------~IEWIdDt-------ScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF---------RIEWIDDT-------SCNVVFKDEETAARALVAL   62 (62)
T ss_pred             eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCc---------eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence            35689999995 58889999999999    555         48888665       3889999999999999765

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=94.24  E-value=0.085  Score=44.70  Aligned_cols=60  Identities=10%  Similarity=0.302  Sum_probs=44.6

Q ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      .|....||-=..|......||.++|+.||.|.         |..+-|.       -|||...+.+.|..|+..++.
T Consensus         5 ~P~RdHVFhltFPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~   64 (87)
T PF08675_consen    5 QPSRDHVFHLTFPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLKK   64 (87)
T ss_dssp             --SGCCEEEEE--TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred             CCCcceEEEEeCchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence            34445555445999999999999999999998         7777654       499999999999999998763

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=93.81  E-value=0.28  Score=39.44  Aligned_cols=55  Identities=16%  Similarity=0.263  Sum_probs=45.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhc----CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKC----GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL  285 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~----G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l  285 (773)
                      ...+|+|+|+. +++.++|..+|..|    ++..         |..+-|..       |-|.|.+.+.|.+||..|
T Consensus         4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~---------IEWIdDtS-------cNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFR---------IEWIDDTS-------CNVVFKDEETAARALVAL   62 (62)
T ss_pred             eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCce---------EEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence            45789999994 69999999999999    4433         88887765       889999999999999754

>KOG2416|consensus

Probab=92.89  E-value=0.087  Score=59.34  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ....+.|||.||-.-.|.-+|+.++.+ +|.|..          +.+|..    +..|||.|.+.++|...+.+|||...
T Consensus       441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee----------~WmDkI----KShCyV~yss~eEA~atr~AlhnV~W  506 (718)
T KOG2416|consen  441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE----------FWMDKI----KSHCYVSYSSVEEAAATREALHNVQW  506 (718)
T ss_pred             CCccceEeeecccccchHHHHHHHHhhccCchHH----------HHHHHh----hcceeEecccHHHHHHHHHHHhcccc
Confidence            456789999999888999999999995 555542          244543    77899999999999999999999886


Q ss_pred             c---CeEEEEEEcc
Q psy2160         576 R---GKKIKVERAK  586 (773)
Q Consensus       576 ~---g~~i~V~~a~  586 (773)
                      .   ++.|.+.++.
T Consensus       507 P~sNPK~L~adf~~  520 (718)
T KOG2416|consen  507 PPSNPKHLIADFVR  520 (718)
T ss_pred             CCCCCceeEeeecc
Confidence            4   5778887765

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=92.11  E-value=0.22  Score=49.24  Aligned_cols=81  Identities=25%  Similarity=0.161  Sum_probs=51.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhh-cCcc---cccccCCceeEEEEec-CCCCC-cceEEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQK-CGLV---MKDVDTNQMKIKLYTD-PYTKD-FKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~-~G~I---~~~~~~~~p~i~l~~d-~~tg~-~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      ..++|.|++||+.+|++++.+.++. +|..   ..        +.-... ...+. .-.-|||.|.+.+++..-...++|
T Consensus         6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y--------~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g   77 (176)
T PF03467_consen    6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYY--------FQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG   77 (176)
T ss_dssp             ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EE--------EEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred             cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEE--------EecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence            5689999999999999999987775 4444   11        221111 11111 234699999999999999999999


Q ss_pred             ceecC-----eEEEEEeecc
Q psy2160         288 YEIRG-----KKIKVERAKF  302 (773)
Q Consensus       288 ~~l~g-----~~I~V~~A~~  302 (773)
                      ..|.+     .+-.|++|-+
T Consensus        78 ~~F~D~kg~~~~~~VE~Apy   97 (176)
T PF03467_consen   78 HVFVDSKGNEYPAVVEFAPY   97 (176)
T ss_dssp             EEEE-TTS-EEEEEEEE-SS
T ss_pred             cEEECCCCCCcceeEEEcch
Confidence            98854     4556777764

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG4285|consensus

Probab=91.91  E-value=0.46  Score=49.61  Aligned_cols=52  Identities=19%  Similarity=0.194  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy2160         660 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT  714 (773)
Q Consensus       660 edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~  714 (773)
                      .-|..+|++||.|.+.+...  .-.+..|+|.+.-+|.+||.. ||++|+|-.+.
T Consensus       211 s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmi  262 (350)
T KOG4285|consen  211 SIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMI  262 (350)
T ss_pred             hHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEE
Confidence            67889999999998876653  346899999999999999998 99999987653

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=91.86  E-value=0.63  Score=43.49  Aligned_cols=74  Identities=12%  Similarity=0.191  Sum_probs=57.0

Q ss_pred             CCCCCEEEEcCCCCCCC----HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         497 AQENTKVYVSNLPLDLT----QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t----~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      .++..+|.|+=|..++.    -..+...++.||+|.        +|.+.     |  +.-|.|.|.+..+|..|+.++..
T Consensus        83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~--------SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s  147 (166)
T PF15023_consen   83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ--------SVTLC-----G--RQSAVVVFKDITSACKAVSAFQS  147 (166)
T ss_pred             CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcc--------eeeec-----C--CceEEEEehhhHHHHHHHHhhcC
Confidence            45678899987766653    234555567899998        56665     3  55799999999999999998887


Q ss_pred             ceecCeEEEEEEcc
Q psy2160         573 YEIRGKKIKVERAK  586 (773)
Q Consensus       573 ~~i~g~~i~V~~a~  586 (773)
                       ...|..+.+.|-+
T Consensus       148 -~~pgtm~qCsWqq  160 (166)
T PF15023_consen  148 -RAPGTMFQCSWQQ  160 (166)
T ss_pred             -CCCCceEEeeccc
Confidence             5678899998865

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=91.61  E-value=0.27  Score=48.70  Aligned_cols=86  Identities=24%  Similarity=0.171  Sum_probs=52.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHh-cCcceeccCCCceEEEEEec-CCCCC-CcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTD-PYTKD-FKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~I~~~~~~~~~~i~l~~d-~~tg~-~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ...+.|.|++||+.+|++++.+.++. ++.... +    ..+.-... ...+. .-.-|+|.|.+.+++..-...++|+.
T Consensus         5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~-w----~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~   79 (176)
T PF03467_consen    5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD-W----YYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV   79 (176)
T ss_dssp             ----EEEEEEE-TTS-HHHHCCCCSS--SSE--------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred             ccCceEEEeCCCCCCCHHHHHHHhhhhcccccc-e----EEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence            34679999999999999999997776 554410 0    01221111 11111 23469999999999999999999988


Q ss_pred             ec---C--eEEEEEEcccc
Q psy2160         575 IR---G--KKIKVERAKFT  588 (773)
Q Consensus       575 i~---g--~~i~V~~a~~~  588 (773)
                      |.   |  .+-.|++|-++
T Consensus        80 F~D~kg~~~~~~VE~Apyq   98 (176)
T PF03467_consen   80 FVDSKGNEYPAVVEFAPYQ   98 (176)
T ss_dssp             EE-TTS-EEEEEEEE-SS-
T ss_pred             EECCCCCCcceeEEEcchh
Confidence            86   3  35678888763

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>KOG2068|consensus

Probab=86.21  E-value=0.27  Score=52.27  Aligned_cols=79  Identities=29%  Similarity=0.458  Sum_probs=61.8

Q ss_pred             CccEEEEcCCCCCCCHHHHH---HHHhhcCcccccccCCceeEEEEecCC----CCCcceEEEEEecChHHHHHHHHHcC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPY----TKDFKGDALCTYIKKESVDLALSILD  286 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~---~~Fs~~G~I~~~~~~~~p~i~l~~d~~----tg~~kG~AfV~F~~~esA~~Al~~ln  286 (773)
                      ...-+||-+||...-.+.+.   +.|..||.|..        |.+.++..    .|- ..-++|+|...++|..||...+
T Consensus        76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~k--------i~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~  146 (327)
T KOG2068|consen   76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINK--------IVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVD  146 (327)
T ss_pred             hhhhhhhhCCCccccchhhhhCcccccccccceE--------EeecCCcccccCCCC-CCcccccccchHhhhhHHHHhh
Confidence            67889999999887555554   48999999987        77777652    122 2238999999999999999999


Q ss_pred             CceecCeEEEEEeec
Q psy2160         287 GYEIRGKKIKVERAK  301 (773)
Q Consensus       287 g~~l~g~~I~V~~A~  301 (773)
                      |..+.|+.++.....
T Consensus       147 g~~~dg~~lka~~gt  161 (327)
T KOG2068|consen  147 GFVDDGRALKASLGT  161 (327)
T ss_pred             hHHhhhhhhHHhhCC
Confidence            999999887775544

>KOG4285|consensus

Probab=85.36  E-value=1.4  Score=46.05  Aligned_cols=51  Identities=20%  Similarity=0.197  Sum_probs=42.9

Q ss_pred             HHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeE
Q psy2160         375 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI  428 (773)
Q Consensus       375 edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I  428 (773)
                      .-|..+|++||.|.+.+..  ..-...+|+|.+..+|++||.. ||+.|+|..+
T Consensus       211 s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vm  261 (350)
T KOG4285|consen  211 SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM  261 (350)
T ss_pred             hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence            4588999999999987755  3366899999999999999985 9999988544

>KOG2253|consensus

Probab=85.32  E-value=0.55  Score=54.09  Aligned_cols=72  Identities=21%  Similarity=0.247  Sum_probs=61.3

Q ss_pred             CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      ..|..-+|||+|+...+..+-+..+...||.|..        .+...         ||||.|.....+..|+..+....+
T Consensus        36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s--------~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~   98 (668)
T KOG2253|consen   36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPS--------WKRDK---------FGFCEFLKHIGDLRASRLLTELNI   98 (668)
T ss_pred             CCCCCceeEecchhhhhhHHHHHHHHhhCCcchh--------hhhhh---------hcccchhhHHHHHHHHHHhcccCC
Confidence            3457789999999999999999999999999986        33221         899999999999999999999889


Q ss_pred             cCeEEEEEe
Q psy2160         291 RGKKIKVER  299 (773)
Q Consensus       291 ~g~~I~V~~  299 (773)
                      .|..+.+..
T Consensus        99 ~~~kl~~~~  107 (668)
T KOG2253|consen   99 DDQKLIENV  107 (668)
T ss_pred             Ccchhhccc
Confidence            888777643

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=85.25  E-value=4.5  Score=33.13  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEEE
Q psy2160         226 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  297 (773)
Q Consensus       226 ~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~V  297 (773)
                      .++.++|+..+.+|+-..           |..|..     || ||.|.+..+|+.+....|+..+.+..|.+
T Consensus        11 ~~~v~d~K~~Lr~y~~~~-----------I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M   65 (66)
T PF11767_consen   11 GVTVEDFKKRLRKYRWDR-----------IRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM   65 (66)
T ss_pred             CccHHHHHHHHhcCCcce-----------EEecCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence            578899999999998643           444443     55 89999999999999999999998888765

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>KOG2068|consensus

Probab=85.06  E-value=0.34  Score=51.54  Aligned_cols=79  Identities=29%  Similarity=0.437  Sum_probs=60.2

Q ss_pred             CCEEEEcCCCCCCCHHHHH---HHHHhcCcceeccCCCceEEEEEecCC--CC-CCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         500 NTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPY--TK-DFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~---~~F~~~G~I~~~~~~~~~~i~l~~d~~--tg-~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      .+-+||-+||..+-.+.+.   ++|.+||.|.        +|.+..++.  .+ ....-++|+|...++|..||...+|.
T Consensus        77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~--------ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~  148 (327)
T KOG2068|consen   77 KNLVYVVGLPLDLADESVLERTEYFGQYGKIN--------KIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF  148 (327)
T ss_pred             hhhhhhhCCCccccchhhhhCcccccccccce--------EEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence            4678899999887666654   4788999998        677766651  11 11224899999999999999999999


Q ss_pred             eecCeEEEEEEcc
Q psy2160         574 EIRGKKIKVERAK  586 (773)
Q Consensus       574 ~i~g~~i~V~~a~  586 (773)
                      .+.|+.|+..++.
T Consensus       149 ~~dg~~lka~~gt  161 (327)
T KOG2068|consen  149 VDDGRALKASLGT  161 (327)
T ss_pred             HhhhhhhHHhhCC
Confidence            9999887766654

>KOG4574|consensus

Probab=84.94  E-value=0.61  Score=54.96  Aligned_cols=72  Identities=29%  Similarity=0.301  Sum_probs=60.8

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec--CeE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR--GKK  579 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~--g~~  579 (773)
                      ..++.|.+-..|-.-|..+|+.||.+.        ++...++-+      .|.|.|.+.++|..|+..|+|..+.  |-+
T Consensus       300 ~~~~~nn~v~~tSssL~~l~s~yg~v~--------s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~P  365 (1007)
T KOG4574|consen  300 KQSLENNAVNLTSSSLATLCSDYGSVA--------SAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAP  365 (1007)
T ss_pred             hhhhhcccccchHHHHHHHHHhhcchh--------hheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence            344556666778889999999999998        688877753      7999999999999999999999875  888


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      .+|.+|+.
T Consensus       366 s~V~~ak~  373 (1007)
T KOG4574|consen  366 SRVSFAKT  373 (1007)
T ss_pred             eeEEeccc
Confidence            99998874

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=84.93  E-value=2.8  Score=41.69  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC--CceecCeEEEEEEccc
Q psy2160         513 TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYEIRGKKIKVERAKF  587 (773)
Q Consensus       513 t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~~i~g~~i~V~~a~~  587 (773)
                      ....|+++|..|+.+.        .+..++.      -+-..|.|.+.+.|..|...|+  +..+.|..++|.++..
T Consensus         8 ~~~~l~~l~~~~~~~~--------~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~   70 (184)
T PF04847_consen    8 NLAELEELFSTYDPPV--------QFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP   70 (184)
T ss_dssp             -HHHHHHHHHTT-SS---------EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred             hHHHHHHHHHhcCCce--------EEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence            4578999999999887        4555533      4568999999999999999999  9999999999999863

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG4574|consensus

Probab=83.73  E-value=0.89  Score=53.65  Aligned_cols=72  Identities=29%  Similarity=0.301  Sum_probs=62.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee--cCeE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI--RGKK  294 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l--~g~~  294 (773)
                      +.++.|.+-..+-.-|..+|++||.|.+        +...++-+      .|+|.|...++|.+|+..|.|.++  -|-+
T Consensus       300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s--------~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~P  365 (1007)
T KOG4574|consen  300 KQSLENNAVNLTSSSLATLCSDYGSVAS--------AWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAP  365 (1007)
T ss_pred             hhhhhcccccchHHHHHHHHHhhcchhh--------heeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence            4456667777899999999999999998        88888776      899999999999999999999976  4788


Q ss_pred             EEEEeecc
Q psy2160         295 IKVERAKF  302 (773)
Q Consensus       295 I~V~~A~~  302 (773)
                      .+|.+|+.
T Consensus       366 s~V~~ak~  373 (1007)
T KOG4574|consen  366 SRVSFAKT  373 (1007)
T ss_pred             eeEEeccc
Confidence            88988874

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=83.18  E-value=4.4  Score=33.87  Aligned_cols=64  Identities=27%  Similarity=0.384  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEc
Q psy2160         510 LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA  585 (773)
Q Consensus       510 ~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a  585 (773)
                      ..++..+|..++...+.|... +.  -+|.|.        ..|+||+-. .+.|..++..|++..+.|++|.|+.|
T Consensus        11 dg~~~~~iv~~i~~~~gi~~~-~I--G~I~I~--------~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A   74 (74)
T PF03880_consen   11 DGLTPRDIVGAICNEAGIPGR-DI--GRIDIF--------DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA   74 (74)
T ss_dssp             GT--HHHHHHHHHTCTTB-GG-GE--EEEEE---------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred             cCCCHHHHHHHHHhccCCCHH-hE--EEEEEe--------eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence            458889999999988766532 11  145555        347999885 45889999999999999999999876

; PDB: 2G0C_A 3MOJ_B.

>KOG0804|consensus

Probab=82.53  E-value=5  Score=44.47  Aligned_cols=82  Identities=13%  Similarity=0.213  Sum_probs=66.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+.+.|+|-.+|..+|..+|..|+..+-....       .|++++|..  .++=.++|.|.+.++|..-.+.+||..|..
T Consensus        72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~-------~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~  142 (493)
T KOG0804|consen   72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQIS-------DIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS  142 (493)
T ss_pred             CCCcEEEEEeccccccHHHHHHHHHHHhhhhh-------eeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence            34789999999999999999999997765443       699999753  245578999999999999999999999873


Q ss_pred             ------eEEEEEEcccc
Q psy2160         578 ------KKIKVERAKFT  588 (773)
Q Consensus       578 ------~~i~V~~a~~~  588 (773)
                            +-|.|..+.+.
T Consensus       143 le~e~Chll~V~~ve~~  159 (493)
T KOG0804|consen  143 LEPEVCHLLYVDRVEVT  159 (493)
T ss_pred             CCccceeEEEEEEEEEE
Confidence                  46677766654

>KOG2591|consensus

Probab=82.23  E-value=2  Score=48.45  Aligned_cols=68  Identities=16%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHh--cCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC--ce
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQK--CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG--YE  574 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~--~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng--~~  574 (773)
                      ..|.|.++-||..+..|+++.+|+.  |-.+.        +|.+..+..       -||+|.+..+|+.|...|..  ..
T Consensus       174 kRcIvilREIpettp~e~Vk~lf~~encPk~i--------scefa~N~n-------WyITfesd~DAQqAykylreevk~  238 (684)
T KOG2591|consen  174 KRCIVILREIPETTPIEVVKALFKGENCPKVI--------SCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKT  238 (684)
T ss_pred             ceeEEEEeecCCCChHHHHHHHhccCCCCCce--------eeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHh
Confidence            4567788999999999999999985  66666        688877653       79999999999999987754  34


Q ss_pred             ecCeEEE
Q psy2160         575 IRGKKIK  581 (773)
Q Consensus       575 i~g~~i~  581 (773)
                      |.|++|.
T Consensus       239 fqgKpIm  245 (684)
T KOG2591|consen  239 FQGKPIM  245 (684)
T ss_pred             hcCcchh
Confidence            5666653

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=81.49  E-value=8.3  Score=35.00  Aligned_cols=68  Identities=12%  Similarity=0.088  Sum_probs=49.3

Q ss_pred             CEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         501 TKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       501 ~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      +.|.|--.|+. ++.+.|..+.+.+-...+       .++|++|..  .++-.+++.|.+.++|..-...+||..|..
T Consensus        13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~-------~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   13 STLCCLAVPPYMTPSDFLLFFGAPFREDIE-------HIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             ceEEEEEeCcccccHHHHHHhhhcccccEE-------EEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            44444444544 555667666666655443       688998853  357789999999999999999999998873

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	773
2dit_A	112	Solution Structure Of The Rrm_1 Domain Of Hiv Tat S		1e-25
2dit_A	112	Solution Structure Of The Rrm_1 Domain Of Hiv Tat S		1e-25
2dny_A	119	Solution Structure Of The Third Rna Binding Domain		7e-07
2dny_A	119	Solution Structure Of The Third Rna Binding Domain		7e-07
2cpe_A	113	Solution Structure Of The Rna Recognition Motif Of		2e-06
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		3e-06
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		3e-06
3ue2_A	118	Crystal Structure Of A Rna Binding Domain Of Poly-U		7e-06
3ue2_A	118	Crystal Structure Of A Rna Binding Domain Of Poly-U		7e-06
2lcw_A	116	Solution Structure Of FusTLS RRM DOMAIN Length = 11		2e-05
2la6_A	99	Solution Nmr Structure Of Rrm Domain Of Rna-Binding		3e-05

>pdb|2DIT|A Chain A, Solution Structure Of The Rrm_1 Domain Of Hiv Tat Specific Factor 1 Variant Length = 112

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 74/103 (71%), Gaps = 5/103 (4%)
Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 397
           P +MR ER     V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP
Sbjct: 9   PSRMRHER-----VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP 63
Query: 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
           +GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+
Sbjct: 64  DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106

>pdb|2DIT|A Chain A, Solution Structure Of The Rrm_1 Domain Of Hiv Tat Specific Factor 1 Variant Length = 112

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 74/103 (71%), Gaps = 5/103 (4%)
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 682
           P +MR ER     V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP
Sbjct: 9   PSRMRHER-----VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP 63
Query: 683 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
           +GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+
Sbjct: 64  DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106

>pdb|2DNY|A Chain A, Solution Structure Of The Third Rna Binding Domain Of Fbp- Interacting Repressor, Siahbp1 Length = 119

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
           R +  +V++++N+ DP   D D+      + ++ EEC K G V +V+++      ++  E
Sbjct: 11  RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 64
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
            + +IF +   A++  + +  LNGRWF  R++ AE +D
Sbjct: 65  IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 102

>pdb|2DNY|A Chain A, Solution Structure Of The Third Rna Binding Domain Of Fbp- Interacting Repressor, Siahbp1 Length = 119

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
           R +  +V++++N+ DP   D D+      + ++ EEC K G V +V+++      ++  E
Sbjct: 11  RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 64
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
            + +IF +   A++  + +  LNGRWF  R++ AE +D
Sbjct: 65  IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 102

>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing Sarcoma(Ews) Protein Length = 113

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
            +N+ +YV  L   +T ++  +  ++CG+V  +  T Q  I +Y D  T   KGDA  +Y
Sbjct: 13  SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 72
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
               +   A+   DG + +G K+KV  A+
Sbjct: 73  EDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 14/93 (15%)
Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQI 403
           +V++++N+ DP   D D+      + ++ EEC K G V +V+++      ++  E + +I
Sbjct: 125 TVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 178
Query: 404 FFKEPEAADACREL--LNGRWFGQRQITAETWD 434
           F +   A++  + +  LNGRWF  R++ AE +D
Sbjct: 179 FVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 14/93 (15%)
Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQI 688
           +V++++N+ DP   D D+      + ++ EEC K G V +V+++      ++  E + +I
Sbjct: 125 TVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 178
Query: 689 FFKEPEAADACREL--LNGRWFGQRQITAETWD 719
           F +   A++  + +  LNGRWF  R++ AE +D
Sbjct: 179 FVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211

>pdb|3UE2|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U Binding Splicing Factor 60kda (Puf60) From Homo Sapiens At 1.23 A Resolution Length = 118

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
           R +  +V +++N  DP   D D+      + ++ EEC K G V +V+++      ++  E
Sbjct: 16  RKQESTVXVLRNXVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 69
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
            + +IF +   A++  + +  LNGRWF  R++ AE +D
Sbjct: 70  IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107

>pdb|3UE2|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U Binding Splicing Factor 60kda (Puf60) From Homo Sapiens At 1.23 A Resolution Length = 118

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
           R +  +V +++N  DP   D D+      + ++ EEC K G V +V+++      ++  E
Sbjct: 16  RKQESTVXVLRNXVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 69
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
            + +IF +   A++  + +  LNGRWF  R++ AE +D
Sbjct: 70  IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107

>pdb|2LCW|A Chain A, Solution Structure Of FusTLS RRM DOMAIN Length = 116

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
            +N  ++V  L  ++T E   +  ++ G++  +  T Q  I LYTD  T   KG+A  ++
Sbjct: 5   SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSF 64
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERA 585
               S   A+   DG E  G  IKV  A
Sbjct: 65  DDPPSAKAAIDWFDGKEFSGNPIKVSFA 92

>pdb|2LA6|A Chain A, Solution Nmr Structure Of Rrm Domain Of Rna-Binding Protein Fus From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr6430a Length = 99

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +N  ++V  L  ++T E   +  ++ G++  +  T Q  I LYTD  T   KG+A  ++ 
Sbjct: 12  DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 71
Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
              S   A+   DG E  G  IKV  A
Sbjct: 72  DPPSAKAAIDWFDGKEFSGNPIKVSFA 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	773
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	2e-33
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	2e-33
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	3e-32
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	1e-31
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	4e-32
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	4e-31
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	1e-30
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	1e-29
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	4e-25
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	4e-25
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	3e-22
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	3e-18
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	1e-16
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	6e-22
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	3e-18
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	2e-12
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	5e-05
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	2e-21
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	2e-21
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	5e-20
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	5e-20
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	1e-19
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	1e-19
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	1e-17
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	3e-16
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	1e-14
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	2e-10
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	3e-17
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	3e-17
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	1e-11
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	1e-05
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	2e-16
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	8e-16
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	1e-14
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-16
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	3e-16
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	3e-16
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	4e-16
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	6e-16
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	4e-10
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	1e-05
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	5e-16
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	6e-10
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	8e-10
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-06
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	6e-06
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	7e-15
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	3e-11
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	3e-06
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	6e-05
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	5e-14
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	7e-10
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	1e-09
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	2e-06
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	2e-04
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	7e-14
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	1e-13
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	4e-07
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	2e-13
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	5e-13
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	6e-11
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	2e-10
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	4e-13
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	5e-13
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	1e-12
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	8e-09
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	5e-13
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	1e-12
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	1e-12
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	2e-11
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	2e-05
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	2e-05
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	4e-12
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	6e-12
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	2e-06
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	4e-12
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	1e-11
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	5e-12
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	2e-11
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	9e-12
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	1e-11
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	3e-08
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	3e-08
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	1e-11
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	1e-11
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	1e-11
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	9e-09
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	2e-11
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	4e-11
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	4e-11
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	2e-10
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	6e-11
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	2e-10
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	8e-11
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	8e-11
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	1e-04
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	1e-04
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	1e-10
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	3e-10
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	1e-10
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	7e-10
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	2e-10
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	3e-09
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	2e-10
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	6e-10
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	2e-10
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	1e-05
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	6e-05
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	1e-04
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	2e-10
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	2e-09
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	3e-10
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	7e-09
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	8e-04
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	8e-04
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	3e-10
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	1e-09
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	2e-04
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	2e-04
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	4e-10
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	4e-10
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	4e-10
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-07
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	5e-10
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	7e-10
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	9e-04
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	5e-10
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	1e-09
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	1e-05
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	1e-05
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	7e-10
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	1e-09
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	7e-10
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	6e-09
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	1e-09
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	5e-08
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	1e-09
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	6e-09
1x4e_A	85	RNA binding motif, single-stranded interacting pro	1e-09
1x4e_A	85	RNA binding motif, single-stranded interacting pro	3e-09
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	1e-09
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	3e-09
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	1e-09
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	4e-09
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	1e-09
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	3e-09
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	2e-09
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	2e-09
2dis_A	109	Unnamed protein product; structural genomics, RRM	2e-09
2dis_A	109	Unnamed protein product; structural genomics, RRM	3e-08
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	2e-09
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	8e-09
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	2e-09
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	3e-09
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	3e-09
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	4e-09
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	1e-04
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	1e-04
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	4e-09
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	9e-09
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	9e-04
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	9e-04
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	4e-09
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	4e-09
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	4e-09
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	4e-08
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	4e-09
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	4e-09
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	5e-09
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	2e-08
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	5e-09
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	1e-06
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	8e-09
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	6e-08
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	8e-09
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	3e-08
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	9e-09
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	5e-08
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	1e-08
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	3e-08
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	1e-08
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	3e-08
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	4e-07
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	4e-07
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-08
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-08
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	5e-04
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	2e-08
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	2e-08
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	2e-08
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	2e-08
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	2e-08
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	3e-08
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	2e-08
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	7e-08
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	3e-08
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	6e-08
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	3e-08
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	2e-07
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	2e-06
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	2e-06
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	3e-08
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	5e-08
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-08
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	2e-07
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	7e-04
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	7e-04
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	3e-08
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	2e-06
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	2e-05
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	2e-05
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	3e-08
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	4e-08
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	4e-08
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	5e-08
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	5e-08
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	2e-07
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	6e-08
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	2e-07
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	9e-08
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	1e-06
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	4e-04
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	4e-04
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	1e-07
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	3e-07
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	2e-07
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	4e-06
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	2e-07
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	1e-06
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens} Len	3e-07
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens} Len	1e-06
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	3e-07
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	8e-07
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	3e-07
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	3e-06
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	4e-07
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	2e-06
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	5e-07
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	5e-07
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	8e-07
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	2e-06
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	8e-07
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	1e-06
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	8e-07
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	8e-07
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	9e-07
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	1e-06
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	9e-07
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	5e-06
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	1e-06
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	2e-06
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	1e-06
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	8e-06
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	1e-06
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	2e-06
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	1e-06
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	2e-06
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	1e-06
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	5e-06
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	2e-06
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	2e-05
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	2e-06
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	5e-06
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	2e-06
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	2e-06
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	2e-06
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	5e-06
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	2e-06
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	3e-06
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	2e-05
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	7e-05
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	2e-06
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	2e-06
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-06
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	2e-05
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	2e-06
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	8e-06
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	5e-04
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	5e-04
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	2e-06
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	2e-06
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	2e-06
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	9e-06
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	3e-06
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	2e-05
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	1e-04
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	1e-04
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	3e-06
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	5e-06
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	3e-06
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	7e-06
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	2e-05
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	3e-05
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	4e-06
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	1e-05
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	4e-06
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	5e-06
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	7e-06
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	1e-05
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	9e-05
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	9e-05
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	8e-06
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	3e-05
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	8e-06
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	1e-05
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	9e-06
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	3e-05
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	1e-05
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	1e-05
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	1e-05
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	1e-05
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	1e-05
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	2e-05
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	2e-05
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	1e-04
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	2e-05
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	2e-05
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	2e-05
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	4e-05
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	3e-05
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	1e-04
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	3e-05
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	2e-04
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	3e-05
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	5e-05
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	5e-05
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	3e-04
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	5e-05
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	5e-05
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	5e-05
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	9e-05
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	5e-05
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-04
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	7e-05
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	3e-04
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	1e-04
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	3e-04
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	2e-04
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	2e-04
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	6e-04
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	3e-04
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	8e-04
1x5p_A	97	Negative elongation factor E; structure genomics,	3e-04
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	3e-04
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	3e-04
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	5e-04
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	4e-04
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	7e-04
1x5o_A	114	RNA binding motif, single-stranded interacting pro	4e-04
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	6e-04
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	8e-04
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	8e-04
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	9e-04

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 112

 Score =  123 bits (311), Expect = 2e-33
 Identities = 49/102 (48%), Positives = 74/102 (72%)

Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 403
            R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA +
Sbjct: 10  SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASV 69

Query: 404 FFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA 445
            F++PE AD C + L+GRWFG RQITA+ WDG T Y+   ++
Sbjct: 70  SFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGPSS 111

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 112

 Score =  123 bits (311), Expect = 2e-33
 Identities = 49/102 (48%), Positives = 74/102 (72%)

Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 688
            R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA +
Sbjct: 10  SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASV 69

Query: 689 FFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA 730
            F++PE AD C + L+GRWFG RQITA+ WDG T Y+   ++
Sbjct: 70  SFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGPSS 111

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score =  119 bits (301), Expect = 3e-32
 Identities = 27/91 (29%), Positives = 42/91 (46%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
               +N  ++V  L  ++T E   +  ++ G++  +  T Q  I LYTD  T   KG+A 
Sbjct: 8   HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEAT 67

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERA 585
            ++    S   A+   DG E  G  IKV  A
Sbjct: 68  VSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Length = 99

 Score =  117 bits (295), Expect = 1e-31
 Identities = 26/88 (29%), Positives = 42/88 (47%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            ++  ++V  L  ++T E   +  ++ G++  +  T Q  I LYTD  T   KG+A  ++
Sbjct: 11  SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSF 70

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
               S   A+   DG E  G  IKV  A
Sbjct: 71  DDPPSAKAAIDWFDGKEFSGNPIKVSFA 98

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score =  119 bits (301), Expect = 4e-32
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            +  +N+ +YV  L   +T ++  +  ++CG+V  +  T Q  I +Y D  T   KGDA 
Sbjct: 10  DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 69

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE 592
            +Y    +   A+   DG + +G K+KV  A+      
Sbjct: 70  VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 107

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 113

 Score =  116 bits (293), Expect = 4e-31
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 198 GQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
           G       P   D   +++ +YV  L   +T ++  +  ++CG+V  +  T Q  I +Y 
Sbjct: 1   GSSGSSGDP---DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL 57

Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE 307
           D  T   KGDA  +Y    +   A+   DG + +G K+KV  A+      
Sbjct: 58  DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 107

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score =  115 bits (289), Expect = 1e-30
 Identities = 27/93 (29%), Positives = 43/93 (46%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +   +N  ++V  L  ++T E   +  ++ G++  +  T Q  I LYTD  T   KG+A 
Sbjct: 2   QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEAT 61

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587
            ++    S   A+   DG E  G  IKV  A  
Sbjct: 62  VSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} Length = 116

 Score =  112 bits (282), Expect = 1e-29
 Identities = 26/89 (29%), Positives = 42/89 (47%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           ++  ++V  L  ++T E   +  ++ G++  +  T Q  I LYTD  T   KG+A  ++ 
Sbjct: 6   DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 65

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKF 302
              S   A+   DG E  G  IKV  A  
Sbjct: 66  DPPSAKAAIDWFDGKEFSGNPIKVSFATR 94

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Length = 114

 Score = 99.7 bits (249), Expect = 4e-25
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
              + N+F+P   +++V    E + D+ EEC+K G V  + +     +G   +      A
Sbjct: 9   CFQLSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAA 67

Query: 411 ADACRELLNGRWFGQRQITAETWD 434
           A A    L+GRWF  + ITA    
Sbjct: 68  AIAAVNALHGRWFAGKMITAAYVP 91

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Length = 114

 Score = 99.7 bits (249), Expect = 4e-25
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 695
              + N+F+P   +++V    E + D+ EEC+K G V  + +     +G   +      A
Sbjct: 9   CFQLSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAA 67

Query: 696 ADACRELLNGRWFGQRQITAETWD 719
           A A    L+GRWF  + ITA    
Sbjct: 68  AIAAVNALHGRWFAGKMITAAYVP 91

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 54/429 (12%), Positives = 104/429 (24%), Gaps = 161/429 (37%)

Query: 192 EEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQM 251
           EE     +  + +            K+ +  LP D+T +E  +++    L    VD    
Sbjct: 6   EEIRKRLEHTERQFRN-------RRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKY-- 56

Query: 252 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDP 311
                        KG A  T +  E  + A++      +R +++ V+             
Sbjct: 57  -------------KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ----------- 92

Query: 312 KLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 371
                                                ++++ V NL         +T   
Sbjct: 93  -----------------------------------PTDALLCVANL------PPSLT--- 108

Query: 372 EYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ 427
             QQ   E     G +++  L         +G     + + ++A   +  L G+  G   
Sbjct: 109 --QQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--- 163

Query: 428 ITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKR 487
                                            + + V                   +  
Sbjct: 164 --------------------------------PRTLYVHWT-------------DAGQLT 178

Query: 488 KKDLEKLKKAQENTKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYT 546
              L        +  + V  LP      + +   +                 +L      
Sbjct: 179 PALL-------HSRCLCVDRLPPGFNDVDALCRALSAVHSP--------TFCQLACGQDG 223

Query: 547 KDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKK 606
           +  KG A+  Y   E  + A    DG  + G  ++V                 P    + 
Sbjct: 224 QL-KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC-------------APGPPGRS 269

Query: 607 DLEKLKKAQ 615
            L  L  AQ
Sbjct: 270 MLAALIAAQ 278

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 58/390 (14%), Positives = 101/390 (25%), Gaps = 141/390 (36%)

Query: 327 KKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGH 386
            +   K  +    + R  R      I+++ L        DVT      Q++ +  S    
Sbjct: 5   PEEIRKRLEHTERQFRNRRK-----ILIRGL------PGDVT-----NQEVHDLLSDYEL 48

Query: 387 VKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAE 446
               V   K   G A +     E A+A     +                           
Sbjct: 49  KYCFVDKYK---GTAFVTLLNGEQAEAAINAFHQSRLR---------------------- 83

Query: 447 EREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVS 506
                         +++ V+                                 +  + V+
Sbjct: 84  -------------ERELSVQLQ-----------------------------PTDALLCVA 101

Query: 507 NLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLA 566
           NLP  LTQ++F E+++  G + +          L     T   KG     Y+KK+S   A
Sbjct: 102 NLPPSLTQQQFEELVRPFGSLER--------CFLVYSERTGQSKGYGFAEYMKKDSAARA 153

Query: 567 LSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKM 626
            S L G  +  + + V                   +     L                  
Sbjct: 154 KSDLLGKPLGPRTLYVHWT-------------DAGQLTPALL------------------ 182

Query: 627 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPE 683
               S+    + V  L  P   D D          L    S         L    D   +
Sbjct: 183 ---HSRC---LCVDRL-PPGFNDVDA---------LCRALSAVHSPTFCQLACGQDGQLK 226

Query: 684 GVAQIFFKEPEAADACRELLNGRWFGQRQI 713
           G A + ++  E A+  ++  +G   G   +
Sbjct: 227 GFAVLEYETAEMAEEAQQQADGLSLGGSHL 256

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 76/238 (31%)

Query: 481 LKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL 540
           L P++ RK+     ++ +   K+ +  LP D+T +E  +++    L    VD        
Sbjct: 3   LDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKY------ 56

Query: 541 YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKP 600
                    KG A  T +  E  + A++      +R +++ V+                 
Sbjct: 57  ---------KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ--------------- 92

Query: 601 KKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 660
                                            ++++ V NL         +T     QQ
Sbjct: 93  -------------------------------PTDALLCVANL------PPSLT-----QQ 110

Query: 661 DLREECSKCGHVKKVVL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
              E     G +++  L         +G     + + ++A   +  L G+  G R + 
Sbjct: 111 QFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 95.8 bits (239), Expect = 6e-22
 Identities = 53/407 (13%), Positives = 103/407 (25%), Gaps = 139/407 (34%)

Query: 315 PKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 374
           P  KR  D      A            R    +  +V+ VKNL       K        Q
Sbjct: 10  PDSKRPLDEGSPAAAGLTSKKANEALTR--NRELTTVL-VKNL------PKSYN-----Q 55

Query: 375 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 432
             + +    CG +    V    K     A+I F   + A A     +             
Sbjct: 56  NKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKV----------- 104

Query: 433 WDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE 492
                                        +I V                           
Sbjct: 105 -------------------------VGQNEIIVSHLT----------------------- 116

Query: 493 KLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 552
                     ++++N P   TQ    +++Q   +V   +       +L +  +    +  
Sbjct: 117 -------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSI-------RLPSLRFNTS-RRF 161

Query: 553 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLK 612
           A      KE     +  L+G +I G  +  + +                   K       
Sbjct: 162 AYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS---------------NPLEKSKRTDSA 206

Query: 613 KAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV 672
             + +                   I+++NL        ++      +  LRE     G +
Sbjct: 207 TLEGR------------------EIMIRNL------STELLD----ENLLRESFEGFGSI 238

Query: 673 KKV-VLHDKHPEGVAQIF----FKEPEAADACRELLNGRWFGQRQIT 714
           +K+ +   +             F+  ++A+   + +N    G R+I+
Sbjct: 239 EKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREIS 284

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 53/416 (12%), Positives = 99/416 (23%), Gaps = 145/416 (34%)

Query: 177 EKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVM 236
           ++ +D  +P       +K      R  E           T V V NLP    Q +  +  
Sbjct: 13  KRPLDEGSPAAAGLTSKKANEALTRNRE----------LTTVLVKNLPKSYNQNKVYKYF 62

Query: 237 QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296
           + CG +        + + +      K     A   + + +    A++      +   +I 
Sbjct: 63  KHCGPI--------IHVDVADS--LKKNFRFARIEFARYDGALAAITKTHKV-VGQNEII 111

Query: 297 VERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKN 356
           V                                   L+                   + N
Sbjct: 112 VSHLTEC----------------------------TLW-------------------MTN 124

Query: 357 LFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV----LHDKHPEGVAQIFFKEPEAAD 412
                      T     Q+++R+       V   +    L        A I     E A 
Sbjct: 125 F------PPSYT-----QRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173

Query: 413 ACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTM 472
            C E LNG                                       G  +  + +    
Sbjct: 174 YCVEKLNGLKIE-----------------------------------GYTLVTKVS---- 194

Query: 473 KGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDV 531
                          K         +   ++ + NL  +L  E  + E  +  G +    
Sbjct: 195 -----------NPLEKSKRTDSATLE-GREIMIRNLSTELLDENLLRESFEGFGSI---- 238

Query: 532 DTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                KI +             A   +  K+S + AL  ++   +  ++I V  A 
Sbjct: 239 ----EKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLAD 289

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 35/275 (12%), Positives = 64/275 (23%), Gaps = 80/275 (29%)

Query: 466 ERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG 525
           +R                  K+  +       +E T V V NLP    Q +  +  + CG
Sbjct: 13  KRPLDEGS----PAAAGLTSKKANEALTRN--RELTTVLVKNLPKSYNQNKVYKYFKHCG 66

Query: 526 LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
            +        + + +      K     A   + + +    A++      +   +I V   
Sbjct: 67  PI--------IHVDVADS--LKKNFRFARIEFARYDGALAAITKTHKV-VGQNEIIVSHL 115

Query: 586 KFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDP 645
                                           L+                   + N    
Sbjct: 116 TEC----------------------------TLW-------------------MTNF--- 125

Query: 646 ALFDKDVTLILEYQQDLREECSKCGHVKKVV----LHDKHPEGVAQIFFKEPEAADACRE 701
                  T     Q+++R+       V   +    L        A I     E A  C E
Sbjct: 126 ---PPSYT-----QRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 177

Query: 702 LLNGRWFGQRQITAETWDGKTRYKIQETAEEREAR 736
            LNG       +  +          +  +   E R
Sbjct: 178 KLNGLKIEGYTLVTK-VSNPLEKSKRTDSATLEGR 211

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 24/127 (18%), Positives = 35/127 (27%), Gaps = 17/127 (13%)

Query: 600 PKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 659
           P  KR  D      A            R    +  +V+ VKNL       K        Q
Sbjct: 10  PDSKRPLDEGSPAAAGLTSKKANEALTR--NRELTTVL-VKNL------PKSYN-----Q 55

Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717
             + +    CG +    V    K     A+I F   + A A     +       +I    
Sbjct: 56  NKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQ-NEIIVSH 114

Query: 718 WDGKTRY 724
               T +
Sbjct: 115 LTECTLW 121

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} PDB: 3us5_A 2dny_A Length = 118

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 18/108 (16%)

Query: 341 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP--- 397
           +R + S    V++++N+ DP   D D       + ++ EEC K G V +V+++ +     
Sbjct: 15  LRKQEST---VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEKQGEE 65

Query: 398 ---EGVAQIF--FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
              E + +IF  F          + LNGRWF  R++ AE +D + R+ 
Sbjct: 66  EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD-QERFD 112

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} PDB: 3us5_A 2dny_A Length = 118

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 18/108 (16%)

Query: 626 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP--- 682
           +R + S    V++++N+ DP   D D       + ++ EEC K G V +V+++ +     
Sbjct: 15  LRKQEST---VMVLRNMVDPKDIDDD------LEGEVTEECGKFGAVNRVIIYQEKQGEE 65

Query: 683 ---EGVAQIF--FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
              E + +IF  F          + LNGRWF  R++ AE +D + R+ 
Sbjct: 66  EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD-QERFD 112

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Length = 105

 Score = 84.9 bits (210), Expect = 5e-20
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 340 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-----D 394
            M    +K   V++++N+      D+D+      + + +EEC K G V K V+       
Sbjct: 2   AMGKCPTK---VVLLRNMVGAGEVDEDL------EVETKEECEKYGKVGKCVIFEIPGAP 52

Query: 395 KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEE 447
                   + F+  E+A      LNGR+FG R + A  ++   ++++ + AE+
Sbjct: 53  DDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN-LDKFRVLDLAEQ 104

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Length = 105

 Score = 84.9 bits (210), Expect = 5e-20
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 15/113 (13%)

Query: 625 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-----D 679
            M    +K   V++++N+      D+D+      + + +EEC K G V K V+       
Sbjct: 2   AMGKCPTK---VVLLRNMVGAGEVDEDL------EVETKEECEKYGKVGKCVIFEIPGAP 52

Query: 680 KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEE 732
                   + F+  E+A      LNGR+FG R + A  ++   ++++ + AE+
Sbjct: 53  DDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN-LDKFRVLDLAEQ 104

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Length = 105

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQIF 404
           V+ + N+  P     D     E  +D+R+ECSK G VK + +       +    G   + 
Sbjct: 7   VLCLMNMVLPEELL-DDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 65

Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
           F          + L GR F  R +  +  D    Y 
Sbjct: 66  FTSVFDCQKAMQGLTGRKFANRVVVTKYCD-PDSYH 100

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Length = 105

 Score = 83.7 bits (207), Expect = 1e-19
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPEGVAQIF 689
           V+ + N+  P     D     E  +D+R+ECSK G VK + +       +    G   + 
Sbjct: 7   VLCLMNMVLPEELL-DDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 65

Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
           F          + L GR F  R +  +  D    Y 
Sbjct: 66  FTSVFDCQKAMQGLTGRKFANRVVVTKYCD-PDSYH 100

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 41/223 (18%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G  + ++YV N+P  +T+E  ++       +       Q              K  A   
Sbjct: 1   GAMARRLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLE 57

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 331
           +   +    A++  DG   +G+ +K+ R                      D + L    E
Sbjct: 58  FRSVDETTQAMA-FDGIIFQGQSLKIRRP--------------------HDYQPLPGMSE 96

Query: 332 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV 391
               + P  +      +   + +  L         +         ++E  +  G +K   
Sbjct: 97  NPSVYVPGVVSTVVPDSAHKLFIGGL------PNYLN-----DDQVKELLTSFGPLKAFN 145

Query: 392 LHDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
           L  K        G A   + +    D     LNG   G +++ 
Sbjct: 146 LV-KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 41/218 (18%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           ++YV N+P  +T+E  ++       +       Q              K  A   +   +
Sbjct: 6   RLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 62

Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW 621
               A++  DG   +G+ +K+ R                      D + L    E    +
Sbjct: 63  ETTQAMA-FDGIIFQGQSLKIRRP--------------------HDYQPLPGMSENPSVY 101

Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 681
            P  +      +   + +  L         +         ++E  +  G +K   L  K 
Sbjct: 102 VPGVVSTVVPDSAHKLFIGGL------PNYLN-----DDQVKELLTSFGPLKAFNLV-KD 149

Query: 682 PE-----GVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
                  G A   + +    D     LNG   G +++ 
Sbjct: 150 SATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 67/241 (27%)

Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP---------EGVAQIF 404
           V N+         +T     ++ + +  +    +  +     +P         +  A + 
Sbjct: 9   VGNI------PFGIT-----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLE 57

Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIK 464
           F+  +         +G                                     F G+ +K
Sbjct: 58  FRSVDETTQAMAF-DGI-----------------------------------IFQGQSLK 81

Query: 465 VERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKC 524
           + R               P       +  +     + K+++  LP  L  ++  E++   
Sbjct: 82  IRRPHD--YQPLPGMSENPSVYVPGVVSTVVPDSAH-KLFIGGLPNYLNDDQVKELLTSF 138

Query: 525 GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 584
           G +            L  D  T   KG A C Y+     D A++ L+G ++  KK+ V+R
Sbjct: 139 GPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190

Query: 585 A 585
           A
Sbjct: 191 A 191

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 187 ENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDV 246
            + +    +               + + + K+++  LP  L  ++  E++   G +    
Sbjct: 86  HDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA-- 143

Query: 247 DTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
                   L  D  T   KG A C Y+     D A++ L+G ++  KK+ V+RA
Sbjct: 144 ------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 65/222 (29%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
            +T + V+ LP D+T  E   + +  G +           ++  D  T    G A   + 
Sbjct: 2   SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFT 53

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
            +     A+ +L+G  +R K++KV  A             +P  +  KD          L
Sbjct: 54  SEMDSQRAIKVLNGITVRNKRLKVSYA-------------RPGGESIKD--------TNL 92

Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VL 392
           +                   V NL       + +T        L     K G + +  +L
Sbjct: 93  Y-------------------VTNL------PRTIT-----DDQLDTIFGKYGSIVQKNIL 122

Query: 393 HDK---HPEGVAQIFFKEPEAADACRELLNGRWF--GQRQIT 429
            DK    P GVA + + + E A      LN      G + ++
Sbjct: 123 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 44/222 (19%), Positives = 74/222 (33%), Gaps = 65/222 (29%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
            NT + V+ LP D+T  E   + +  G +           ++  D  T    G A   + 
Sbjct: 2   SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFT 53

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
            +     A+ +L+G  +R K++KV  A             +P  +  KD          L
Sbjct: 54  SEMDSQRAIKVLNGITVRNKRLKVSYA-------------RPGGESIKD--------TNL 92

Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VL 677
           +                   V NL       + +T        L     K G + +  +L
Sbjct: 93  Y-------------------VTNL------PRTIT-----DDQLDTIFGKYGSIVQKNIL 122

Query: 678 HDK---HPEGVAQIFFKEPEAADACRELLNGRWF--GQRQIT 714
            DK    P GVA + + + E A      LN      G + ++
Sbjct: 123 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 83/240 (34%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDK---HPEGVAQIFFKE 407
           +IV  L       +D+T      ++L       G +    ++ D    +  G A + F  
Sbjct: 6   LIVNYL------PQDMT-----DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS 54

Query: 408 PEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVER 467
              +    ++LNG                                    T   K++KV  
Sbjct: 55  EMDSQRAIKVLNGI-----------------------------------TVRNKRLKVSY 79

Query: 468 AKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLV 527
           A+             P  +  KD          T +YV+NLP  +T ++   +  K G +
Sbjct: 80  AR-------------PGGESIKD----------TNLYVTNLPRTITDDQLDTIFGKYGSI 116

Query: 528 MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKVERA 585
              V  N +      D  T   +G A   Y K+E    A+S L+     G  + + V  A
Sbjct: 117 ---VQKNIL-----RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            + T +YV+NLP  +T ++   +  K G +   V  N +      D  T   +G A   Y
Sbjct: 87  IKDTNLYVTNLPRTITDDQLDTIFGKYGSI---VQKNIL-----RDKLTGRPRGVAFVRY 138

Query: 273 IKKESVDLALSILDGYEIRG--KKIKVERA 300
            K+E    A+S L+     G  + + V  A
Sbjct: 139 NKREEAQEAISALNNVIPEGGSQPLSVRLA 168

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 54/235 (22%)

Query: 484 KKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 543
           +  R    ++       ++VYV ++  +L ++   +     G +          I +  D
Sbjct: 12  QMGRGSAAQRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWD 63

Query: 544 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKK 603
             T   KG A   Y   E+  LAL  ++   + G+ IKV R                  +
Sbjct: 64  SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP-------------SNIGQ 110

Query: 604 RKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR 663
            +  +++L                 E ++  + I V ++       +D++       D++
Sbjct: 111 AQPIIDQLA----------------EEARAFNRIYVASV------HQDLS-----DDDIK 143

Query: 664 EECSKCGHVKKVVLHDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQI 713
                 G +K   L  + P      G   I +++ +++      +N    G + +
Sbjct: 144 SVFEAFGKIKSATLA-RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 197

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 54/221 (24%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
              ++VYV ++  +L ++   +     G +          I +  D  T   KG A   Y
Sbjct: 26  AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEY 77

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
              E+  LAL  ++   + G+ IKV R                  + +  +++L      
Sbjct: 78  EVPEAAQLALEQMNSVMLGGRNIKVGRP-------------SNIGQAQPIIDQLA----- 119

Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 392
                      E ++  + I V ++       +D++       D++      G +K   L
Sbjct: 120 -----------EEARAFNRIYVASV------HQDLS-----DDDIKSVFEAFGKIKSATL 157

Query: 393 HDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQI 428
             + P      G   I +++ +++      +N    G + +
Sbjct: 158 A-RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 197

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 42/253 (16%), Positives = 87/253 (34%), Gaps = 72/253 (28%)

Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH 396
               R       S + V ++        ++      +  +R+  +  G +K + +  D  
Sbjct: 17  SAAQRQGALAIMSRVYVGSI------YYELG-----EDTIRQAFAPFGPIKSIDMSWDSV 65

Query: 397 ---PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453
               +G A + ++ PEAA    E +N    G                             
Sbjct: 66  TMKHKGFAFVEYEVPEAAQLALEQMNSVMLG----------------------------- 96

Query: 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEN-TKVYVSNLPLDL 512
                 G+ IKV R                  + +  +++L +      ++YV+++  DL
Sbjct: 97  ------GRNIKVGRPS-------------NIGQAQPIIDQLAEEARAFNRIYVASVHQDL 137

Query: 513 TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572
           + ++   V +  G +            L  DP T   KG     Y K +S   A+S ++ 
Sbjct: 138 SDDDIKSVFEAFGKIKS--------ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189

Query: 573 YEIRGKKIKVERA 585
           +++ G+ ++V +A
Sbjct: 190 FDLGGQYLRVGKA 202

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 194 KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
           +     + +P   +  +      ++YV+++  DL+ ++   V +  G +           
Sbjct: 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI--------KSA 155

Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
            L  DP T   KG     Y K +S   A+S ++ +++ G+ ++V +A
Sbjct: 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.2 bits (202), Expect = 3e-16
 Identities = 99/639 (15%), Positives = 192/639 (30%), Gaps = 186/639 (29%)

Query: 245 DVDTNQMKIKLYTD---PYTKDFKGDALCTYIKKESVDLALSILDGYE---IRGKKIKVE 298
           D +T + + + Y D    +   F  +  C  ++    D+  SIL   E   I   K  V 
Sbjct: 8   DFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVS 62

Query: 299 RAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGE---RSKNESVII-- 353
                     +    K ++  +K +E+        + +    ++ E    S    + I  
Sbjct: 63  GTLRLF----WTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 354 VKNLF-DPALFDK-DVTLILEYQQDLREECSKCGHVKKVVLH------------------ 393
              L+ D  +F K +V+ +  Y + LR+   +    K V++                   
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 394 ---DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQ-ETAEERE 449
               K    +  +  K   + +   E+L    +          D  +  K++  + +   
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 450 ARL-------------------KKWETF-LGKKIKVERAKFTMKGEAYDPKLKPKKKRKK 489
            RL                   K W  F L  KI +     T               R K
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----T---------------RFK 275

Query: 490 DLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKC-GLVMKD-----VDTNQMKIKLY-- 541
            +     A   T + + +  + LT +E   ++ K      +D     + TN  ++ +   
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 542 -------TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKVERAKFTMKGE 592
                  T    K    D L        ++ +L++L+  E R    ++ V    F     
Sbjct: 336 SIRDGLATWDNWKHVNCDKL-----TTIIESSLNVLEPAEYRKMFDRLSV----FP---- 382

Query: 593 AYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKD- 651
                +         L  +         W       +  K++ +++V  L   +L +K  
Sbjct: 383 -PSAHIPTIL-----LSLI---------W------FDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 652 ---VTLILEYQQDLREECSKCG--HVKKVV----------LHDKHPEGVAQIFF------ 690
                 I     +L+ +       H + +V            D  P  + Q F+      
Sbjct: 422 KESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 691 ----KEPEAADACREL-LNGRWFGQRQITAET-WDGKT----------RYK--IQETAEE 732
               + PE     R + L+ R+  Q+     T W+              YK  I +   +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 733 REARLKKWETFLEEEDKKKKEAGKGSIDEKESKELQAPL 771
            E  +     FL        +  +  I  K +  L+  L
Sbjct: 541 YERLVNAILDFL-------PKIEENLICSKYTDLLRIAL 572

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Length = 104

 Score = 73.7 bits (181), Expect = 3e-16
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 351 VIIVKNLFDPALFDKDVTLIL---------------EYQQDLREECSKCGHVKKVVLHDK 395
            I + N++            L                +++   E   K G V+++ + D 
Sbjct: 3   TIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN 62

Query: 396 ---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
              H  G   + F+  E A+     LN RWF  + I AE
Sbjct: 63  LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Length = 104

 Score = 73.7 bits (181), Expect = 3e-16
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 636 VIIVKNLFDPALFDKDVTLIL---------------EYQQDLREECSKCGHVKKVVLHDK 680
            I + N++            L                +++   E   K G V+++ + D 
Sbjct: 3   TIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN 62

Query: 681 ---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
              H  G   + F+  E A+     LN RWF  + I AE
Sbjct: 63  LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 75.7 bits (187), Expect = 4e-16
 Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 65/221 (29%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
            T + V+ LP ++TQEEF  +    G +           KL  D  T    G     YI 
Sbjct: 2   KTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYID 53

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 334
            +  + A++ L+G  ++ K IKV  A             +P     +D          L+
Sbjct: 54  PKDAEKAINTLNGLRLQTKTIKVSYA-------------RPSSASIRD--------ANLY 92

Query: 335 DWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLH 393
                              V  L       K +T     Q++L +  S+ G +    +L 
Sbjct: 93  -------------------VSGL------PKTMT-----QKELEQLFSQYGRIITSRILV 122

Query: 394 DK---HPEGVAQIFFKEPEAADACRELLNGRWF--GQRQIT 429
           D+      GV  I F +   A+   + LNG+        IT
Sbjct: 123 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 75.3 bits (186), Expect = 6e-16
 Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 65/221 (29%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
            T + V+ LP ++TQEEF  +    G +           KL  D  T    G     YI 
Sbjct: 2   KTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYID 53

Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 619
            +  + A++ L+G  ++ K IKV  A             +P     +D          L+
Sbjct: 54  PKDAEKAINTLNGLRLQTKTIKVSYA-------------RPSSASIRD--------ANLY 92

Query: 620 DWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLH 678
                              V  L       K +T     Q++L +  S+ G +    +L 
Sbjct: 93  -------------------VSGL------PKTMT-----QKELEQLFSQYGRIITSRILV 122

Query: 679 DK---HPEGVAQIFFKEPEAADACRELLNGRWF--GQRQIT 714
           D+      GV  I F +   A+   + LNG+        IT
Sbjct: 123 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 83/244 (34%)

Query: 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDK---HPEGVAQI 403
           +++ +IV  L       +++T     Q++ R      G ++   ++ DK      G   +
Sbjct: 1   SKTNLIVNYL------PQNMT-----QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 49

Query: 404 FFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKI 463
            + +P+ A+     LNG                                        K I
Sbjct: 50  NYIDPKDAEKAINTLNGL-----------------------------------RLQTKTI 74

Query: 464 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQK 523
           KV  A+             P     +          +  +YVS LP  +TQ+E  ++  +
Sbjct: 75  KVSYAR-------------PSSASIR----------DANLYVSGLPKTMTQKELEQLFSQ 111

Query: 524 CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIK 581
            G +   + +  +      D  T   +G     + K+   + A+  L+G +  G  + I 
Sbjct: 112 YGRI---ITSRIL-----VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163

Query: 582 VERA 585
           V+ A
Sbjct: 164 VKFA 167

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Length = 167

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +YVS LP  +TQ+E  ++  + G +   + +  +      D  T   +G     +
Sbjct: 86  IRDANLYVSGLPKTMTQKELEQLFSQYGRI---ITSRIL-----VDQVTGVSRGVGFIRF 137

Query: 273 IKKESVDLALSILDGYEIRG--KKIKVERA 300
            K+   + A+  L+G +  G  + I V+ A
Sbjct: 138 DKRIEAEEAIKGLNGQKPSGATEPITVKFA 167

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 77.0 bits (189), Expect = 5e-16
 Identities = 39/245 (15%), Positives = 76/245 (31%), Gaps = 47/245 (19%)

Query: 343 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ 402
           G      SV++V NL +P    + VT      Q L       G V++V +        A 
Sbjct: 28  GLAGAGNSVLLVSNL-NP----ERVT-----PQSLFILFGVYGDVQRVKILFNKK-ENAL 76

Query: 403 IFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKK 462
           +   +   A      LNG     + I       +     +E  E++              
Sbjct: 77  VQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG------------- 123

Query: 463 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQ 522
                       + Y      + K+            +  +++SN+P  +++E+   +  
Sbjct: 124 ----------LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS 173

Query: 523 KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-RGKKIK 581
             G V+K               + +  +  AL      E    AL  L  +++     ++
Sbjct: 174 SNGGVVK------------GFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 221

Query: 582 VERAK 586
           V  +K
Sbjct: 222 VSFSK 226

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 30/210 (14%)

Query: 212 GEESTKVYVSNL-PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 270
           G  ++ + VSNL P  +T +    +    G V +        +K+  +      K +AL 
Sbjct: 31  GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALV 77

Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 330
                    LA+S L+G+++ GK I++     T+         +  ++ +   +    + 
Sbjct: 78  QMADGNQAQLAMSHLNGHKLHGKPIRI-----TLSKHQNVQLPREGQEDQGLTKDYGNSP 132

Query: 331 EKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV 390
              F     K         + + + N+         V+     ++DL+   S  G V K 
Sbjct: 133 LHRFKKPGSKNFQNIFPPSATLHLSNI------PPSVS-----EEDLKVLFSSNGGVVKG 181

Query: 391 VLHDKHPEGVAQIFFKEPEAADACRELLNG 420
               +    +A I     E A      L+ 
Sbjct: 182 FKFFQKDRKMALIQMGSVEEAVQALIDLHN 211

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 58.9 bits (142), Expect = 8e-10
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 30/207 (14%)

Query: 500 NTKVYVSNL-PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           N+ + VSNL P  +T +    +    G V +        +K+  +      K +AL    
Sbjct: 34  NSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMA 80

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
                 LA+S L+G+++ GK I++     T+         +  ++ +   +    +    
Sbjct: 81  DGNQAQLAMSHLNGHKLHGKPIRI-----TLSKHQNVQLPREGQEDQGLTKDYGNSPLHR 135

Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
           F     K         + + + N+         V+     ++DL+   S  G V K    
Sbjct: 136 FKKPGSKNFQNIFPPSATLHLSNI------PPSVS-----EEDLKVLFSSNGGVVKGFKF 184

Query: 679 DKHPEGVAQIFFKEPEAADACRELLNG 705
            +    +A I     E A      L+ 
Sbjct: 185 FQKDRKMALIQMGSVEEAVQALIDLHN 211

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 17/129 (13%)

Query: 178 KSVDATAPMENPKAEEKVVPGQK----RKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFV 233
           ++V      +  +   K          +KP    + +I   S  +++SN+P  +++E+  
Sbjct: 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169

Query: 234 EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-RG 292
            +    G V+K               + +  +  AL      E    AL  L  +++   
Sbjct: 170 VLFSSNGGVVK------------GFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGEN 217

Query: 293 KKIKVERAK 301
             ++V  +K
Sbjct: 218 HHLRVSFSK 226

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ 687
           G      SV++V NL +P    + VT      Q L       G V++V +        A 
Sbjct: 28  GLAGAGNSVLLVSNL-NP----ERVT-----PQSLFILFGVYGDVQRVKILFNKK-ENAL 76

Query: 688 IFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 734
           +   +   A      LNG     + I       +     +E  E++ 
Sbjct: 77  VQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG 123

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 73.2 bits (179), Expect = 7e-15
 Identities = 35/243 (14%), Positives = 74/243 (30%), Gaps = 43/243 (17%)

Query: 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKE 407
           +  V++V  L D +  + D          +       G+V+KV      P G A +   +
Sbjct: 3   DSPVLMVYGL-DQSKMNCD---------RVFNVFCLYGNVEKVKFMKSKP-GAAMVEMAD 51

Query: 408 PEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVER 467
             A D     LN  +   +++             Q      ++   +  +   K     R
Sbjct: 52  GYAVDRAITHLNNNFMFGQKM-------NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESR 104

Query: 468 AKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLV 527
                           +    +   K +    +  ++  N PL++T+E F E+  + G+ 
Sbjct: 105 --------------NNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150

Query: 528 MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587
                       +       +     L  +  K      L  L+ Y+++          +
Sbjct: 151 --------RPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP---Y 199

Query: 588 TMK 590
           T+K
Sbjct: 200 TLK 202

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 32/225 (14%)

Query: 212 GEESTKVYVSNL-PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 270
           G +S  + V  L    +  +    V    G V         K+K     + K   G A+ 
Sbjct: 1   GADSPVLMVYGLDQSKMNCDRVFNVFCLYGNV--------EKVK-----FMKSKPGAAMV 47

Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 330
                 +VD A++ L+   + G+K+ V  +K           L+      KD  + +  +
Sbjct: 48  EMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNR 107

Query: 331 EKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV 390
              F       +       +V+   N         +VT     +++  E C + G  +  
Sbjct: 108 ---FSTPEQAAKNRIQHPSNVLHFFNA------PLEVT-----EENFFEICDELGVKRPT 153

Query: 391 VL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
            +              + +     A      LN            
Sbjct: 154 SVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 11/105 (10%)

Query: 201 RKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY 260
             PE      I   S  ++  N PL++T+E F E+  + G+             +     
Sbjct: 109 STPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRP--------TSVKVFSG 160

Query: 261 TKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMK 305
             +     L  +  K      L  L+ Y+++          +T+K
Sbjct: 161 KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP---YTLK 202

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A Length = 205

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 11/81 (13%)

Query: 633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKE 692
           +  V++V  L D +  + D          +       G+V+KV      P G A +   +
Sbjct: 3   DSPVLMVYGL-DQSKMNCD---------RVFNVFCLYGNVEKVKFMKSKP-GAAMVEMAD 51

Query: 693 PEAADACRELLNGRWFGQRQI 713
             A D     LN  +   +++
Sbjct: 52  GYAVDRAITHLNNNFMFGQKM 72

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 47/238 (19%)

Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 409
           SV++V NL +P    + VT      Q L       G V++V +        A +   +  
Sbjct: 4   SVLLVSNL-NP----ERVT-----PQSLFILFGVYGDVQRVKILFNKK-ENALVQMADGN 52

Query: 410 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAK 469
            A      LNG     + I   T   K +        + +  L K               
Sbjct: 53  QAQLAMSHLNGHKLHGKPIRI-TL-SKHQNVQLPREGQEDQGLTK--------------- 95

Query: 470 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529
                  Y      + K+            +  +++SN+P  +++E+   +    G V+K
Sbjct: 96  ------DYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 149

Query: 530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-RGKKIKVERAK 586
                          + +  +  AL      E    AL  L  +++     ++V  +K
Sbjct: 150 GF------------KFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 30/207 (14%)

Query: 500 NTKVYVSNL-PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           N+ + VSNL P  +T +    +    G V +        +K+  +      K +AL    
Sbjct: 3   NSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMA 49

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
                 LA+S L+G+++ GK I++  +K   +      + +  +   KD       +   
Sbjct: 50  DGNQAQLAMSHLNGHKLHGKPIRITLSKH--QNVQLPREGQEDQGLTKDYGNSPLHR--- 104

Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
           F     K         + + + N+         V+     ++DL+   S  G V K    
Sbjct: 105 FKKPGSKNFQNIFPPSATLHLSNI------PPSVS-----EEDLKVLFSSNGGVVKGFKF 153

Query: 679 DKHPEGVAQIFFKEPEAADACRELLNG 705
            +    +A I     E A      L+ 
Sbjct: 154 FQKDRKMALIQMGSVEEAVQALIDLHN 180

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 30/207 (14%)

Query: 215 STKVYVSNL-PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           ++ + VSNL P  +T +    +    G V +        +K+  +      K +AL    
Sbjct: 3   NSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMA 49

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
                 LA+S L+G+++ GK I++  +K   +      + +  +   KD       +   
Sbjct: 50  DGNQAQLAMSHLNGHKLHGKPIRITLSKH--QNVQLPREGQEDQGLTKDYGNSPLHR--- 104

Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
           F     K         + + + N+         V+     ++DL+   S  G V K    
Sbjct: 105 FKKPGSKNFQNIFPPSATLHLSNI------PPSVS-----EEDLKVLFSSNGGVVKGFKF 153

Query: 394 DKHPEGVAQIFFKEPEAADACRELLNG 420
            +    +A I     E A      L+ 
Sbjct: 154 FQKDRKMALIQMGSVEEAVQALIDLHN 180

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKR--KPEPPKWFDIGEESTKVYVSNLPLDLTQE 230
           SK +   +      +    ++       R  KP    + +I   S  +++SN+P  +++E
Sbjct: 76  SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEE 135

Query: 231 EFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290
           +   +    G V+K               + +  +  AL      E    AL  L  +++
Sbjct: 136 DLKVLFSSNGGVVKGF------------KFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 183

Query: 291 -RGKKIKVERAK 301
                ++V  +K
Sbjct: 184 GENHHLRVSFSK 195

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 694
           SV++V NL +P    + VT      Q L       G V++V +        A +   +  
Sbjct: 4   SVLLVSNL-NP----ERVT-----PQSLFILFGVYGDVQRVKILFNKK-ENALVQMADGN 52

Query: 695 AADACRELLNGRWFGQRQI 713
            A      LNG     + I
Sbjct: 53  QAQLAMSHLNGHKLHGKPI 71

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 66/216 (30%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTKDFKGDA 268
           ++ K++V  +P   ++++  E+ ++ G      V++D   N  + K              
Sbjct: 2   DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC-----------C 50

Query: 269 LCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK 328
             T+  +++   A + L   ++        +              KP    K +  + + 
Sbjct: 51  FVTFYTRKAALEAQNALHNMKVLPGMHHPIQM-------------KPADSEKNNAVEDR- 96

Query: 329 AQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK 388
              KLF                   +  +       K  T     + D+R   S  G ++
Sbjct: 97  ---KLF-------------------IGMI------SKKCT-----ENDIRVMFSSFGQIE 123

Query: 389 KV-VLHDK--HPEGVAQIFFKEPEAADACRELLNGR 421
           +  +L        G A + F     A    + ++  
Sbjct: 124 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 29/216 (13%), Positives = 66/216 (30%), Gaps = 66/216 (30%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTKDFKGDA 553
           +  K++V  +P   ++++  E+ ++ G      V++D   N  + K              
Sbjct: 2   DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC-----------C 50

Query: 554 LCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK 613
             T+  +++   A + L   ++        +              KP    K +  + + 
Sbjct: 51  FVTFYTRKAALEAQNALHNMKVLPGMHHPIQM-------------KPADSEKNNAVEDR- 96

Query: 614 AQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK 673
              KLF                   +  +       K  T     + D+R   S  G ++
Sbjct: 97  ---KLF-------------------IGMI------SKKCT-----ENDIRVMFSSFGQIE 123

Query: 674 KV-VLHDK--HPEGVAQIFFKEPEAADACRELLNGR 706
           +  +L        G A + F     A    + ++  
Sbjct: 124 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A Length = 175

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 83/243 (34%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPE-----GVAQIFF 405
           + V  +       +  +     ++DLRE   + G V ++ VL D+        G   + F
Sbjct: 6   MFVGQV------PRTWS-----EKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 54

Query: 406 KEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKV 465
              +AA   +  L+                                          K+  
Sbjct: 55  YTRKAALEAQNALH----------------------------------------NMKV-- 72

Query: 466 ERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG 525
                            P + +  D EK   A E+ K+++  +    T+ +   +    G
Sbjct: 73  -----------LPGMHHPIQMKPADSEK-NNAVEDRKLFIGMISKKCTENDIRVMFSSFG 120

Query: 526 LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI---RGKKIKV 582
            +    +   ++      P     +G A  T+  +     A+  +   +        + V
Sbjct: 121 QI---EECRILR-----GP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171

Query: 583 ERA 585
           + A
Sbjct: 172 KFA 174

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 33/220 (15%), Positives = 62/220 (28%), Gaps = 59/220 (26%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
            + ++YV N+P  +T+E  ++       +       Q              K  A   + 
Sbjct: 3   SARRLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFR 59

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
             +    A++  DG   +G+ +K+ R         Y P                    KL
Sbjct: 60  SVDETTQAMA-FDGIIFQGQSLKIRRPH------DYQPLPGAH---------------KL 97

Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
           F                   +  L         +         ++E  +  G +K   L 
Sbjct: 98  F-------------------IGGL------PNYLN-----DDQVKELLTSFGPLKAFNLV 127

Query: 394 -DKH---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
            D      +G A   + +    D     LNG   G +++ 
Sbjct: 128 KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 33/217 (15%), Positives = 61/217 (28%), Gaps = 59/217 (27%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           ++YV N+P  +T+E  ++       +       Q              K  A   +   +
Sbjct: 6   RLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 62

Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW 621
               A++  DG   +G+ +K+ R         Y P                    KLF  
Sbjct: 63  ETTQAMA-FDGIIFQGQSLKIRRPH------DYQPLPGAH---------------KLF-- 98

Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-DK 680
                            +  L         +         ++E  +  G +K   L  D 
Sbjct: 99  -----------------IGGL------PNYLN-----DDQVKELLTSFGPLKAFNLVKDS 130

Query: 681 H---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
                +G A   + +    D     LNG   G +++ 
Sbjct: 131 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 38/241 (15%), Positives = 70/241 (29%), Gaps = 87/241 (36%)

Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI-------F-- 404
           V N+         +T     ++ + +  +    +  +     +P    QI       F  
Sbjct: 9   VGNI------PFGIT-----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLE 57

Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIK 464
           F+  +         +G                                     F G+ +K
Sbjct: 58  FRSVDETTQAMAF-DGI-----------------------------------IFQGQSLK 81

Query: 465 VERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKC 524
           + R         Y P     K                 +++  LP  L  ++  E++   
Sbjct: 82  IRRPH------DYQPLPGAHK-----------------LFIGGLPNYLNDDQVKELLTSF 118

Query: 525 GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 584
           G +            L  D  T   KG A C Y+     D A++ L+G ++  KK+ V+R
Sbjct: 119 GPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170

Query: 585 A 585
           A
Sbjct: 171 A 171

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 27/174 (15%)

Query: 138 PKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSK----------VEEKSV-DATAPM 186
             + ++ +  +     F  Q       +   + V +           +E +SV + T  M
Sbjct: 14  FGITEEAMMDF-----FNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 68

Query: 187 ENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDV 246
                +  +  GQ  K   P  +     + K+++  LP  L  ++  E++   G +    
Sbjct: 69  ---AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKA-- 123

Query: 247 DTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
                   L  D  T   KG A C Y+     D A++ L+G ++  KK+ V+RA
Sbjct: 124 ------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 60/219 (27%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            ++     +++ NL  + +  E    + +      D+      +    D  T   +    
Sbjct: 8   SESTTPFNLFIGNLNPNKSVAELKVAISELFAK-NDL-----AV---VDVRTGTNRKFGY 58

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKA 614
             +   E ++ AL  L G ++ G +IK+E+              K +  +K       +A
Sbjct: 59  VDFESAEDLEKALE-LTGLKVFGNEIKLEKP-------------KGRDSKK------VRA 98

Query: 615 QEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKK 674
              L                     KNL        ++T     + +L+E       + +
Sbjct: 99  ARTLL-------------------AKNL------SFNIT-----EDELKEVFEDALEI-R 127

Query: 675 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
           +V  D   +G+A I FK    A+   E   G     R +
Sbjct: 128 LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 60/216 (27%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +++ NL  + +  E    + +      D+      +    D  T   +      +
Sbjct: 11  TTPFNLFIGNLNPNKSVAELKVAISELFAK-NDL-----AV---VDVRTGTNRKFGYVDF 61

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
              E ++ AL  L G ++ G +IK+E+              K +  +K       +A   
Sbjct: 62  ESAEDLEKALE-LTGLKVFGNEIKLEKP-------------KGRDSKK------VRAART 101

Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 392
           L                     KNL        ++T     + +L+E       + ++V 
Sbjct: 102 LL-------------------AKNL------SFNIT-----EDELKEVFEDALEI-RLVS 130

Query: 393 HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
            D   +G+A I FK    A+   E   G     R +
Sbjct: 131 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 32/247 (12%), Positives = 64/247 (25%), Gaps = 84/247 (34%)

Query: 343 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---PEG 399
           G  S     + + NL      + + +       +L+   S+      + + D        
Sbjct: 7   GSESTTPFNLFIGNL------NPNKS-----VAELKVAISELFAKNDLAVVDVRTGTNRK 55

Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
              + F+  E  +   EL  G                                       
Sbjct: 56  FGYVDFESAEDLEKALEL-TGL-----------------------------------KVF 79

Query: 460 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVE 519
           G +IK+E+ K              +  +K              +   NL  ++T++E  E
Sbjct: 80  GNEIKLEKPK-------------GRDSKKVR--------AARTLLAKNLSFNITEDELKE 118

Query: 520 VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579
           V +    +       +              KG A   +  +   +  L    G EI G+ 
Sbjct: 119 VFEDALEIRLVSQDGKS-------------KGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165

Query: 580 IKVERAK 586
           + +    
Sbjct: 166 VSLYYTG 172

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Length = 175

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 19/108 (17%)

Query: 194 KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
           K+   + R  +          +  +   NL  ++T++E  EV +    +       +   
Sbjct: 84  KLEKPKGRDSKKV------RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKS-- 135

Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                      KG A   +  +   +  L    G EI G+ + +    
Sbjct: 136 -----------KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 478 DPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK 537
                    R+       + ++   V+   L   +   +  +     G V          
Sbjct: 3   SGSSGKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKV--------RD 54

Query: 538 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +++ +D  ++  KG A   + + +SV LA+  L G  + G  I V+ ++
Sbjct: 55  VRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQ 102

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 14/114 (12%)

Query: 188 NPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVD 247
           +  + +  V        P +      ++  V+   L   +   +  +     G V     
Sbjct: 3   SGSSGKSPVREPVDNLSPEE-----RDARTVFCMQLAARIRPRDLEDFFSAVGKV----- 52

Query: 248 TNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                +++ +D  ++  KG A   + + +SV LA+  L G  + G  I V+ ++
Sbjct: 53  ---RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQ 102

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 208 WFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 267
              +    + VYVSNLP  LT  +   +  K G V+K        + +  D  T+  KG 
Sbjct: 9   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGV 60

Query: 268 ALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
           A   ++ K+S       ++  ++ G+ IK   A
Sbjct: 61  AFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           + VYVSNLP  LT  +   +  K G V+K        + +  D  T+  KG A   ++ K
Sbjct: 17  STVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDK 68

Query: 561 ESVDLALSILDGYEIRGKKIKVERA 585
           +S       ++  ++ G+ IK   A
Sbjct: 69  DSAQNCTRAINNKQLFGRVIKASIA 93

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH 396
              M G  + ++S + V NL         +T       DL    SK G V KV ++ DK 
Sbjct: 5   SSGMSGGLAPSKSTVYVSNL------PFSLT-----NNDLYRIFSKYGKVVKVTIMKDKD 53

Query: 397 ---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
               +GVA I F + ++A  C   +N +    R I 
Sbjct: 54  TRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH 681
              M G  + ++S + V NL         +T       DL    SK G V KV ++ DK 
Sbjct: 5   SSGMSGGLAPSKSTVYVSNL------PFSLT-----NNDLYRIFSKYGKVVKVTIMKDKD 53

Query: 682 ---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
               +GVA I F + ++A  C   +N +    R I 
Sbjct: 54  TRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 59/219 (26%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +YV +L  D+T+    E     G ++         I++  D  T+   G A   +
Sbjct: 13  YPMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
            +    + AL  ++   I+GK +++  ++        DP                     
Sbjct: 65  QQPADAERALDTMNFDVIKGKPVRIMWSQR-------DPS-------------------- 97

Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KV 390
                       R      I +KNL      DK +       + L +  S  G++   KV
Sbjct: 98  -----------LRKSGVGNIFIKNL------DKSID-----NKALYDTFSAFGNILSCKV 135

Query: 391 VLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
           V  +   +G   + F+  EAA+   E +NG     R++ 
Sbjct: 136 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 59/218 (27%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
               +YV +L  D+T+    E     G ++         I++  D  T+   G A   + 
Sbjct: 14  PMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQ 65

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
           +    + AL  ++   I+GK +++  ++        DP                      
Sbjct: 66  QPADAERALDTMNFDVIKGKPVRIMWSQR-------DPS--------------------- 97

Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVV 676
                      R      I +KNL      DK +       + L +  S  G++   KVV
Sbjct: 98  ----------LRKSGVGNIFIKNL------DKSID-----NKALYDTFSAFGNILSCKVV 136

Query: 677 LHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
             +   +G   + F+  EAA+   E +NG     R++ 
Sbjct: 137 CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 39/276 (14%), Positives = 82/276 (29%), Gaps = 94/276 (34%)

Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDK---HP 397
               S   + + V +L        DVT     +  L E+ S  G +  + V  D      
Sbjct: 8   PSAPSYPMASLYVGDL------HPDVT-----EAMLYEKFSPAGPILSIRVCRDMITRRS 56

Query: 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWET 457
            G A + F++P  A+   + +N                                      
Sbjct: 57  LGYAYVNFQQPADAERALDTMNFDVIK--------------------------------- 83

Query: 458 FLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEF 517
             GK +++  ++             P  ++               +++ NL   +  +  
Sbjct: 84  --GKPVRIMWSQR-----------DPSLRKSGV----------GNIFIKNLDKSIDNKAL 120

Query: 518 VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577
            +     G ++          K+  D      KG     +  +E+ + A+  ++G  +  
Sbjct: 121 YDTFSAFGNILS--------CKVVCDENGS--KGYGFVHFETQEAAERAIEKMNGMLLND 170

Query: 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK 613
           +K+ V R              K +K+R+ +L    K
Sbjct: 171 RKVFVGRF-------------KSRKEREAELGARAK 193

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 461 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEV 520
             ++   +K T       P      + KK+++K         VYV N+    T ++    
Sbjct: 4   PCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDK-------RSVYVGNVDYGSTAQDLEAH 56

Query: 521 MQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580
              CG +         +I +  D ++   KG A   + ++ SVD A++ +D    RG+ I
Sbjct: 57  FSSCGSI--------NRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-MDETVFRGRTI 107

Query: 581 KVERAK 586
           KV   +
Sbjct: 108 KVLPKR 113

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 184 APMENPKAEEKVVPGQKRKPEPPKWFDIGEE----STKVYVSNLPLDLTQEEFVEVMQKC 239
           A     +     +        PP+     E+       VYV N+    T ++       C
Sbjct: 1   AIAPCMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSC 60

Query: 240 GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 299
           G +         +I +  D ++   KG A   + ++ SVD A++ +D    RG+ IKV  
Sbjct: 61  GSI--------NRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-MDETVFRGRTIKVLP 111

Query: 300 AK 301
            +
Sbjct: 112 KR 113

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            ++  +YV N+    T EE       CG V         ++ +  D ++   KG A   +
Sbjct: 4   ADARSIYVGNVDYGATAEELEAHFHGCGSV--------NRVTILCDKFSGHPKGFAYIEF 55

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             KESV  +L+ LD    RG++IKV   +
Sbjct: 56  SDKESVRTSLA-LDESLFRGRQIKVIPKR 83

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +   +YV N+    T EE       CG V         ++ +  D ++   KG A   + 
Sbjct: 5   DARSIYVGNVDYGATAEELEAHFHGCGSV--------NRVTILCDKFSGHPKGFAYIEFS 56

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            KESV  +L+ LD    RG++IKV   +
Sbjct: 57  DKESVRTSLA-LDESLFRGRQIKVIPKR 83

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 61.3 bits (149), Expect = 9e-12
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
             +V  + L  ++ +    ++ +K G V +        +++   P T+   G A   +  
Sbjct: 6   LKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTS 57

Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 615
                  +  L    + G  I  +           D K    ++R K  E +    
Sbjct: 58  TRGAKETVKNLHLTSVMGNIIHAQ----------LDIK---GQQRMKYYELIVNGS 100

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
             +V  + L  ++ +    ++ +K G V +        +++   P T+   G A   +  
Sbjct: 6   LKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTS 57

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 330
                  +  L    + G  I  +           D K    ++R K  E +    
Sbjct: 58  TRGAKETVKNLHLTSVMGNIIHAQ----------LDIK---GQQRMKYYELIVNGS 100

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 375 QDLREECSKCGHVKKVVLHDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
             L++ C K G V++V +   HP      G+A++ F     A    + L+        I 
Sbjct: 21  TFLKDMCRKYGEVEEVEIL-LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79

Query: 430 AE 431
           A+
Sbjct: 80  AQ 81

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 660 QDLREECSKCGHVKKVVLHDKHPE-----GVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
             L++ C K G V++V +   HP      G+A++ F     A    + L+        I 
Sbjct: 21  TFLKDMCRKYGEVEEVEIL-LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79

Query: 715 AE 716
           A+
Sbjct: 80  AQ 81

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 339 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----- 393
           D      +   +V++++N+ DP   D D+      + ++ EEC K G V +V+++     
Sbjct: 114 DANLAGSAMESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQG 167

Query: 394 -DKHPEGVAQIF--FKEPEAADACRELLNGRWFGQRQITAETWD 434
            ++  E + +IF  F          + LNGRWF  R++ AE +D
Sbjct: 168 EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 624 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----- 678
           D      +   +V++++N+ DP   D D+      + ++ EEC K G V +V+++     
Sbjct: 114 DANLAGSAMESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQG 167

Query: 679 -DKHPEGVAQIF--FKEPEAADACRELLNGRWFGQRQITAETWD 719
            ++  E + +IF  F          + LNGRWF  R++ AE +D
Sbjct: 168 EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 180 VDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKC 239
           V    P       +++   Q++   P +     +    + V+ +P  + + +  ++ ++ 
Sbjct: 7   VSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERY 66

Query: 240 GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 299
           G +          +K+  D  T+  +G     +    S   A++ L+G+ I  K++KV  
Sbjct: 67  GPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118

Query: 300 AK 301
           A 
Sbjct: 119 AA 120

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Length = 139

 Score = 53.6 bits (129), Expect = 9e-09
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
                 + V+ +P  + + +  ++ ++ G +          +K+  D  T+  +G     
Sbjct: 39  PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVK 90

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +    S   A++ L+G+ I  K++KV  A 
Sbjct: 91  FQSGSSAQQAIAGLNGFNILNKRLKVALAA 120

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           S+ + V NLP D   +E  ++++   L    VD N               K  A  T + 
Sbjct: 5   SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRN---------------KRTAFVTLLN 49

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            E    A+ +   Y  RGK + V+   
Sbjct: 50  GEQAQNAIQMFHQYSFRGKDLIVQLQP 76

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Length = 88

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           ++ + V NLP D   +E  ++++   L    VD N               K  A  T + 
Sbjct: 5   SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRN---------------KRTAFVTLLN 49

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
            E    A+ +   Y  RGK + V+   
Sbjct: 50  GEQAQNAIQMFHQYSFRGKDLIVQLQP 76

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           S  VY+ ++P D T+E+ +++    G V+         +K+  DP T   KG A   +  
Sbjct: 2   SRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRD 53

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            ES   A+  L+GY++  + +K   + 
Sbjct: 54  LESSASAVRNLNGYQLGSRFLKCGYSS 80

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
             VY+ ++P D T+E+ +++    G V+         +K+  DP T   KG A   +   
Sbjct: 3   RVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDL 54

Query: 561 ESVDLALSILDGYEIRGKKIKVERAK 586
           ES   A+  L+GY++  + +K   + 
Sbjct: 55  ESSASAVRNLNGYQLGSRFLKCGYSS 80

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
               T + V N+P  ++ +E ++      ++   V        L  +       G+A+  
Sbjct: 12  KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV-------CLKYNEKGM-PTGEAMVA 63

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERA 300
           +  ++    A+  L+   I  +K+K+   
Sbjct: 64  FESRDEATAAVIDLNDRPIGSRKVKLSGP 92

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Length = 95

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
             T + V N+P  ++ +E ++      ++   V        L  +       G+A+  + 
Sbjct: 14  GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV-------CLKYNEKGM-PTGEAMVAFE 65

Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
            ++    A+  L+   I  +K+K+   
Sbjct: 66  SRDEATAAVIDLNDRPIGSRKVKLSGP 92

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 60.2 bits (146), Expect = 8e-11
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
           + +  R  + E+ K  +++  +YV NL    T+E+  E+  K G +         KI + 
Sbjct: 21  RDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDI--------KKIIMG 72

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            D   K   G     Y  +   + A+  ++G  +  + I+ +   
Sbjct: 73  LDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 60.2 bits (146), Expect = 8e-11
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 199 QKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 258
           Q  + +  +   + ++S  +YV NL    T+E+  E+  K G +         KI +  D
Sbjct: 23  QHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDI--------KKIIMGLD 74

Query: 259 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
              K   G     Y  +   + A+  ++G  +  + I+ +   
Sbjct: 75  KMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 327 KKAQEKLFDWRPDKMRGERSKNESVII-VKNLFDPALFDKDVTLILEYQQDLREECSKCG 385
           + +Q +   +R D    E+   +S  + V NL          T     ++ + E  SK G
Sbjct: 16  ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNL------SFYTT-----EEQIYELFSKSG 64

Query: 386 HVKKVVL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
            +KK+++      K   G   + +     A+     +NG     R I 
Sbjct: 65  DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 612 KKAQEKLFDWRPDKMRGERSKNESVII-VKNLFDPALFDKDVTLILEYQQDLREECSKCG 670
           + +Q +   +R D    E+   +S  + V NL          T     ++ + E  SK G
Sbjct: 16  ELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNL------SFYTT-----EEQIYELFSKSG 64

Query: 671 HVKKVVL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
            +KK+++      K   G   + +     A+     +NG     R I 
Sbjct: 65  DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
               T + V N+P  ++ +E ++      ++   V        L  +       G+A+  
Sbjct: 12  KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV-------CLKYNEKGM-PTGEAMVA 63

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  ++    A+  L+   I  +K+K+    
Sbjct: 64  FESRDEATAAVIDLNDRPIGSRKVKLVLGS 93

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
             T + V N+P  ++ +E ++      ++   V        L  +       G+A+  + 
Sbjct: 14  GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV-------CLKYNEKGM-PTGEAMVAFE 65

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            ++    A+  L+   I  +K+K+    
Sbjct: 66  SRDEATAAVIDLNDRPIGSRKVKLVLGS 93

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                V+V N+P + T+E+  ++  + G V+          +L  D  T   KG   C Y
Sbjct: 6   RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEY 57

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             +E+   A+  L+G E  G+ ++V+ A 
Sbjct: 58  QDQETALSAMRNLNGREFSGRALRVDNAA 86

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           +    V+V N+P + T+E+  ++  + G V+          +L  D  T   KG   C Y
Sbjct: 6   RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEY 57

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
             +E+   A+  L+G E  G+ ++V+ A 
Sbjct: 58  QDQETALSAMRNLNGREFSGRALRVDNAA 86

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
            G      PP   +    +  VYV NLP D    +    +++ G V   +          
Sbjct: 3   SGSSGPGSPPG--EGAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTW-------- 52

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                +  +  A   Y    +   A+S L G  +    ++V  A+
Sbjct: 53  -----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           A     VYV NLP D    +    +++ G V   +               +  +  A   
Sbjct: 16  APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTW-------------QGPRRRAFLH 62

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           Y    +   A+S L G  +    ++V  A+
Sbjct: 63  YPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
            +    + V NL    + +    V +K G V          + +  +P+TK  +G A   
Sbjct: 10  VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVR 61

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  +     A + +DG E+ G++++V+ A+
Sbjct: 62  FHDRRDAQDAEAAMDGAELDGRELRVQVAR 91

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
              + V NL    + +    V +K G V          + +  +P+TK  +G A   +  
Sbjct: 13  MITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHD 64

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
           +     A + +DG E+ G++++V+ A+
Sbjct: 65  RRDAQDAEAAMDGAELDGRELRVQVAR 91

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 63/168 (37%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPE 409
           I +KNL      DK +       + L +  S  G++   KVV  +   +G   + F+  E
Sbjct: 8   IFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 56

Query: 410 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAK 469
           AA+   E +NG                                        +K+ V R  
Sbjct: 57  AAERAIEKMNGMLLN-----------------------------------DRKVFVGRF- 80

Query: 470 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEF 517
                       K +K+R+ +L    +A+E T VY+ N     T+   
Sbjct: 81  ------------KSRKEREAELG--ARAKEFTNVYIKNFGPGSTRAAA 114

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPE 694
           I +KNL      DK +       + L +  S  G++   KVV  +   +G   + F+  E
Sbjct: 8   IFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 56

Query: 695 AADACRELLNGRWFGQRQIT 714
           AA+   E +NG     R++ 
Sbjct: 57  AAERAIEKMNGMLLNDRKVF 76

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 23/120 (19%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           S  +++ NL   +  +   +     G ++          K+  D      KG     +  
Sbjct: 5   SGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDENGS--KGYGFVHFET 54

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 334
           +E+ + A+  ++G  +  +K+ V R              K +K+R+ +L    K    ++
Sbjct: 55  QEAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTNVY 101

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 23/119 (19%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
             +++ NL   +  +   +     G ++          K+  D      KG     +  +
Sbjct: 6   GNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDENGS--KGYGFVHFETQ 55

Query: 561 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 619
           E+ + A+  ++G  +  +K+ V R              K +K+R+ +L    K    ++
Sbjct: 56  EAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTNVY 101

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 184 APMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVM 243
           A M   +   +      R P         E  T + V NL    + +    V +K G V 
Sbjct: 22  ASMTGGQQMGRGSMSYGRPPPDV------EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75

Query: 244 KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                    + +  D YTK+ +G A   +  K   + A+  +DG  + G++++V+ A+
Sbjct: 76  D--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
           +  +            +  T + V NL    + +    V +K G V          + + 
Sbjct: 29  QMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIP 80

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            D YTK+ +G A   +  K   + A+  +DG  + G++++V+ A+
Sbjct: 81  RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 178 KSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQ 237
                  P  +  A         R           + +  + V  L L  T+ +  EV  
Sbjct: 9   HHSSGLVPRGSHMASMTGGQQMGRGSRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFS 68

Query: 238 KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297
           K G +          + +  D  ++  +G A   +   +    A    +G E+ G++I+V
Sbjct: 69  KYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120

Query: 298 ERAK 301
           + + 
Sbjct: 121 DFSI 124

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
           +   +  + +        N  + V  L L  T+ +  EV  K G +          + + 
Sbjct: 28  QQMGRGSRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIV 79

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            D  ++  +G A   +   +    A    +G E+ G++I+V+ + 
Sbjct: 80  YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 374 QQDLREECSKCGHVKKV-VLHDKH---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
           ++DLRE  SK G +  V +++D+      G A ++F+  + A   +E  NG     R+I 
Sbjct: 60  ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 659 QQDLREECSKCGHVKKV-VLHDKH---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
           ++DLRE  SK G +  V +++D+      G A ++F+  + A   +E  NG     R+I 
Sbjct: 60  ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 201 RKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY 260
                   +    E  K+++S LP   T+EE  E+ +  G V          ++L T+  
Sbjct: 3   SGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR- 53

Query: 261 TKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
               KG A   Y  +     A+  +DG  I+   IKV  + 
Sbjct: 54  AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           E  K+++S LP   T+EE  E+ +  G V          ++L T+      KG A   Y 
Sbjct: 16  EKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYE 66

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            +     A+  +DG  I+   IKV  + 
Sbjct: 67  NESQASQAVMKMDGMTIKENIIKVAISN 94

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 337 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDK 395
                R   S  +  + +  L          T     +++L E C   G VK + ++ ++
Sbjct: 5   SSGVFRYSTSLEKHKLFISGL------PFSCT-----KEELEEICKAHGTVKDLRLVTNR 53

Query: 396 --HPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
              P+G+A + ++    A      ++G    +  I 
Sbjct: 54  AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDK 680
                R   S  +  + +  L          T     +++L E C   G VK + ++ ++
Sbjct: 5   SSGVFRYSTSLEKHKLFISGL------PFSCT-----KEELEEICKAHGTVKDLRLVTNR 53

Query: 681 --HPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
              P+G+A + ++    A      ++G    +  I 
Sbjct: 54  AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 62/216 (28%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +YV NL   +T++   +  Q  G +          IK+  D         A   Y +   
Sbjct: 3   LYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDK-NNKNVNYAFVEYHQSHD 53

Query: 278 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 337
            ++AL  L+G +I    +K+  A                ++   D          LF   
Sbjct: 54  ANIALQTLNGKQIENNIVKINWA-------------FQSQQSSSD------DTFNLF--- 91

Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDK 395
                           V +L      + +V       + LR             V+   +
Sbjct: 92  ----------------VGDL------NVNVD-----DETLRNAFKDFPSYLSGHVMWDMQ 124

Query: 396 --HPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
                G   + F   + A    + + G+    R + 
Sbjct: 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 62/216 (28%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +YV NL   +T++   +  Q  G +          IK+  D         A   Y +   
Sbjct: 3   LYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDK-NNKNVNYAFVEYHQSHD 53

Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 622
            ++AL  L+G +I    +K+  A                ++   D          LF   
Sbjct: 54  ANIALQTLNGKQIENNIVKINWA-------------FQSQQSSSD------DTFNLF--- 91

Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDK 680
                           V +L      + +V       + LR             V+   +
Sbjct: 92  ----------------VGDL------NVNVD-----DETLRNAFKDFPSYLSGHVMWDMQ 124

Query: 681 --HPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
                G   + F   + A    + + G+    R + 
Sbjct: 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 78/237 (32%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDK--HPEGVAQIFFKEP 408
           + V NL      DK +T     +  L++     G +  + ++ DK       A + + + 
Sbjct: 3   LYVGNL------DKAIT-----EDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQS 51

Query: 409 EAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERA 468
             A+   + LNG+                                         +K+  A
Sbjct: 52  HDANIALQTLNGK-----------------------------------QIENNIVKINWA 76

Query: 469 KFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVM 528
                           ++   D        +   ++V +L +++  E      +     +
Sbjct: 77  F-------------QSQQSSSD--------DTFNLFVGDLNVNVDDETLRNAFKDFPSYL 115

Query: 529 KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
                      +  D  T   +G    ++  ++    A+  + G ++ G+ +++  A
Sbjct: 116 S--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 59.7 bits (144), Expect = 4e-10
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 6/133 (4%)

Query: 169 DLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLT 228
           D V S                     V     +   P   +    +   +Y+ NL    T
Sbjct: 22  DDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTT 81

Query: 229 QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 288
            E+  E +   G+   D+    ++IK + +      KG AL     + S    + +L   
Sbjct: 82  DEDLTEAVHSLGVN--DI----LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135

Query: 289 EIRGKKIKVERAK 301
           E+ G+   V    
Sbjct: 136 ELHGQNPVVTPVN 148

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +   +Y+ NL    T E+  E +   G+   D+    ++IK + +      KG AL    
Sbjct: 67  KRIALYIGNLTWWTTDEDLTEAVHSLGVN--DI----LEIKFFENRANGQSKGFALVGVG 120

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            + S    + +L   E+ G+   V    
Sbjct: 121 SEASSKKLMDLLPKRELHGQNPVVTPVN 148

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 37/243 (15%), Positives = 70/243 (28%), Gaps = 87/243 (35%)

Query: 480 KLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTN 534
                K   K  EK     +  +++V NLP D+T+E+F  + ++ G      + +D    
Sbjct: 4   FTIDIKSFLKPGEK--TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---- 57

Query: 535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAY 594
                          +G        +   ++A + LDG  ++ + +++  A         
Sbjct: 58  ---------------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA--------- 93

Query: 595 DPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTL 654
                                                     + VKNL         V+ 
Sbjct: 94  ----------------------------------THGAA---LTVKNL------SPVVS- 109

Query: 655 ILEYQQDLREECSKCGHVKKV-VLHDKH--PEGVAQIFFKEPEAAD-ACRELLNGRWFGQ 710
                + L +  S+ G V+K  V+ D      G   + F     A  A     +G +   
Sbjct: 110 ----NELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165

Query: 711 RQI 713
              
Sbjct: 166 TTP 168

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 90/241 (37%)

Query: 202 KPEPPKWFDIGEE-----STKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQM 251
                K F    E       +++V NLP D+T+E+F  + ++ G      + +D      
Sbjct: 4   FTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------ 57

Query: 252 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDP 311
                        +G        +   ++A + LDG  ++ + +++  A           
Sbjct: 58  -------------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA----------- 93

Query: 312 KLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 371
                                                   + VKNL         V+   
Sbjct: 94  --------------------------------THGAA---LTVKNL------SPVVS--- 109

Query: 372 EYQQDLREECSKCGHVKKV-VLHDKH--PEGVAQIFFKEPEAAD-ACRELLNGRWFGQRQ 427
              + L +  S+ G V+K  V+ D      G   + F     A  A     +G +     
Sbjct: 110 --NELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167

Query: 428 I 428
            
Sbjct: 168 P 168

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Length = 261

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 36/291 (12%), Positives = 71/291 (24%), Gaps = 103/291 (35%)

Query: 327 KKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGH 386
                K F    +K   +R +    + V NL        D+T     ++D +    + G 
Sbjct: 4   FTIDIKSFLKPGEKTYTQRCR----LFVGNL------PTDIT-----EEDFKRLFERYGE 48

Query: 387 VKKVVLH-DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA 445
             +V ++ D+   G   I  +    A+  +  L+G                         
Sbjct: 49  PSEVFINRDR---GFGFIRLESRTLAEIAKAELDGTILK--------------------- 84

Query: 446 EEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYV 505
                          + +++                               A     + V
Sbjct: 85  --------------SRPLRIR-----------------------------FATHGAALTV 101

Query: 506 SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDL 565
            NL   ++ E   +   + G V         K  +  D   +   G     +  K     
Sbjct: 102 KNLSPVVSNELLEQAFSQFGPV--------EKAVVVVDDRGRA-TGKGFVEFAAKPPARK 152

Query: 566 ALSIL-DGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 615
           AL    DG  +     +    +           ++         EKL +  
Sbjct: 153 ALERCGDGAFLLTTTPRPVIVEP----------MEQFDDEDGLPEKLMQKT 193

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E    V+V NL   + +E   E+  + G + K        + +  D   K  K      +
Sbjct: 14  EADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDREGKP-KSFGFVCF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
              ESV  A+++L+G  + G+ I V   
Sbjct: 65  KHPESVSYAIALLNGIRLYGRPINVSGP 92

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            + + +  V+V NL   + +E   E+  + G + K        + +  D   K  K    
Sbjct: 11  AQEEADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDREGKP-KSFGF 61

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERA 585
             +   ESV  A+++L+G  + G+ I V   
Sbjct: 62  VCFKHPESVSYAIALLNGIRLYGRPINVSGP 92

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 341 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPEG 399
           M   + + +  + V NL      +  V      ++ L E   + G + KV +  D+  EG
Sbjct: 8   MFPAQEEADRTVFVGNL------EARVR-----EEILYELFLQAGPLTKVTICKDR--EG 54

Query: 400 VAQIF----FKEPEAADACRELLNGRWFGQRQI 428
             + F    FK PE+      LLNG     R I
Sbjct: 55  KPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 626 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPEG 684
           M   + + +  + V NL      +  V      ++ L E   + G + KV +  D+  EG
Sbjct: 8   MFPAQEEADRTVFVGNL------EARVR-----EEILYELFLQAGPLTKVTICKDR--EG 54

Query: 685 VAQIF----FKEPEAADACRELLNGRWFGQRQI 713
             + F    FK PE+      LLNG     R I
Sbjct: 55  KPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           +++  + V+NL  D  + +  E+ +  G + +        I L  D  T   KG A  ++
Sbjct: 13  DDNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            ++E    A++ + G+      + VE AK
Sbjct: 65  HRREDAARAIAGVSGFGYDHLILNVEWAK 93

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           ++A +N  + V+NL  D  + +  E+ +  G + +        I L  D  T   KG A 
Sbjct: 10  RRADDNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAF 61

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            ++ ++E    A++ + G+      + VE AK
Sbjct: 62  ISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 190 KAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 249
           + +   V     +P P +      E   ++V+ +  + T+E+  +   + G +       
Sbjct: 1   REDYDSVEQDGDEPGPQR----SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKN----- 51

Query: 250 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
              I L  D  T   KG  L  Y   +    A+  L+G ++ G+ I V+   
Sbjct: 52  ---IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           ++ E   ++V+ +  + T+E+  +   + G +          I L  D  T   KG  L 
Sbjct: 18  RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLV 69

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            Y   +    A+  L+G ++ G+ I V+   
Sbjct: 70  EYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 153 GFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIG 212
               +  T      +A+ V  +    +        +   +   V             +  
Sbjct: 11  TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVE-- 68

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
              T + V NL    + +    V +K G V          + +  D YTK+ +G A   +
Sbjct: 69  -GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRF 119

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             K   + A+  +DG  + G++++V+ A+
Sbjct: 120 HDKRDAEDAMDAMDGAVLDGRELRVQMAR 148

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 478 DPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK 537
             K     +           +  T + V NL    + +    V +K G V          
Sbjct: 48  ATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD-------- 99

Query: 538 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
           + +  D YTK+ +G A   +  K   + A+  +DG  + G++++V+ A+
Sbjct: 100 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K   + ++++V NLP D+T+EE  ++ +K G           ++ ++ D      KG   
Sbjct: 10  KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKA--------GEVFIHKD------KGFGF 55

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                +   ++A   LD   +RGK+++V  A 
Sbjct: 56  IRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           + ++++V NLP D+T+EE  ++ +K G           ++ ++ D      KG       
Sbjct: 14  QRSRLFVGNLPPDITEEEMRKLFEKYGKA--------GEVFIHKD------KGFGFIRLE 59

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
            +   ++A   LD   +RGK+++V  A 
Sbjct: 60  TRTLAEIAKVELDNMPLRGKQLRVRFAC 87

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
            S+ +Y+  L    T ++ V++ Q  G ++          K   D  T   KG     + 
Sbjct: 4   GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFD 55

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
              +   A++ L    ++ +  K     
Sbjct: 56  SPSAAQKAVTALKASGVQAQMAKQSGPS 83

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
            ++ +Y+  L    T ++ V++ Q  G ++          K   D  T   KG     + 
Sbjct: 4   GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFD 55

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
              +   A++ L    ++ +  K     
Sbjct: 56  SPSAAQKAVTALKASGVQAQMAKQSGPS 83

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +   VYV  L   +++    E+  + G V+           +  D  T   +G     +
Sbjct: 13  NQDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
           + +E  D A+ I+D  ++ GK I+V +A 
Sbjct: 65  LSEEDADYAIKIMDMIKLYGKPIRVNKAS 93

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           ++  VYV  L   +++    E+  + G V+           +  D  T   +G     ++
Sbjct: 14  QDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFL 65

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            +E  D A+ I+D  ++ GK I+V +A 
Sbjct: 66  SEEDADYAIKIMDMIKLYGKPIRVNKAS 93

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           E   ++V+ +  + T+E+  +   + G +          I L  D  T   KG  L  Y 
Sbjct: 22  EGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYE 73

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
             +    A+  L+G ++ G+ I V+   
Sbjct: 74  TYKEAQAAMEGLNGQDLMGQPISVDWCF 101

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           ++ E   ++V+ +  + T+E+  +   + G +          I L  D  T   KG  L 
Sbjct: 19  RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLV 70

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            Y   +    A+  L+G ++ G+ I V+   
Sbjct: 71  EYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
               E   V++ NL  D  +E   EV+Q+ G +          +++   P T+  KG A 
Sbjct: 10  SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDL--------KYVRVVLHPDTEHSKGCAF 61

Query: 555 CTYIKKESVDLALSILD------GYEIRGKKIKVERAK 586
             ++ +E+    L+         G ++ G+++KV+ A 
Sbjct: 62  AQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            E   V++ NL  D  +E   EV+Q+ G +          +++   P T+  KG A   +
Sbjct: 13  TEGKTVFIRNLSFDSEEEALGEVLQQFGDL--------KYVRVVLHPDTEHSKGCAFAQF 64

Query: 273 IKKESVDLALSILD------GYEIRGKKIKVERAK 301
           + +E+    L+         G ++ G+++KV+ A 
Sbjct: 65  MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           ++YV N+P  +T+E  ++       +          +           K  A   +   +
Sbjct: 8   RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVD 64

Query: 277 SVDLALSILDGYEIRGKKIKVER 299
               A++  DG   +G+ +K+ R
Sbjct: 65  ETTQAMA-FDGIIFQGQSLKIRR 86

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Length = 87

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           ++YV N+P  +T+E  ++       +          +           K  A   +   +
Sbjct: 8   RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVD 64

Query: 562 SVDLALSILDGYEIRGKKIKVER 584
               A++  DG   +G+ +K+ R
Sbjct: 65  ETTQAMA-FDGIIFQGQSLKIRR 86

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDAL 554
            +  N ++++  +P    +EE +E + K    + DV        +Y         +G A 
Sbjct: 4   GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDV-------IVYASAADKMKNRGFAF 56

Query: 555 CTYIKKESVDLALSIL--DGYEIRGKKIKVERAK 586
             Y    +  +A   L     ++ G +I V+ A+
Sbjct: 57  VEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCT 271
             + ++++  +P    +EE +E + K    + DV        +Y         +G A   
Sbjct: 6   SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDV-------IVYASAADKMKNRGFAFVE 58

Query: 272 YIKKESVDLALSIL--DGYEIRGKKIKVERAK 301
           Y    +  +A   L     ++ G +I V+ A+
Sbjct: 59  YESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 199 QKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 258
            +   E         E   ++V+++  +  ++E  E     G +          I L  D
Sbjct: 10  NEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLD 61

Query: 259 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
             T   KG AL  Y   +    A   L+G EI G+ I+V+   
Sbjct: 62  RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +++ E   ++V+++  +  ++E  E     G +          I L  D  T   KG AL
Sbjct: 21  QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYAL 72

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             Y   +    A   L+G EI G+ I+V+   
Sbjct: 73  VEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
             S +++V NL    ++E+  ++    G + +        +    D  TK  KG A  T+
Sbjct: 6   SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTF 57

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  E    A + +DG   +G+ + V  + 
Sbjct: 58  MFPEHAVKAYAEVDGQVFQGRMLHVLPST 86

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
             +  + +++V NL    ++E+  ++    G + +        +    D  TK  KG A 
Sbjct: 3   SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAF 54

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            T++  E    A + +DG   +G+ + V  + 
Sbjct: 55  VTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           K Q   K+ + N+P  L  E    ++ + G+V +         ++ TD  T         
Sbjct: 11  KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVV-ESC------EQVNTDSET----AVVNV 59

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVE 583
           TY  K+    AL  L+G+++    +KV 
Sbjct: 60  TYSSKDQARQALDKLNGFQLENFTLKVA 87

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
            +   K+ + N+P  L  E    ++ + G+V +         ++ TD  T         T
Sbjct: 12  RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVV-ESC------EQVNTDSET----AVVNVT 60

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVE 298
           Y  K+    AL  L+G+++    +KV 
Sbjct: 61  YSSKDQARQALDKLNGFQLENFTLKVA 87

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 12/87 (13%)

Query: 343 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPEGVA 401
             + +    + ++N+         +       + L     + G V+    ++      V 
Sbjct: 9   VPKRQRIRKLQIRNI------PPHLQ-----WEVLDSLLVQYGVVESCEQVNTDSETAVV 57

Query: 402 QIFFKEPEAADACRELLNGRWFGQRQI 428
            + +   + A    + LNG       +
Sbjct: 58  NVTYSSKDQARQALDKLNGFQLENFTL 84

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 12/87 (13%)

Query: 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPEGVA 686
             + +    + ++N+         +       + L     + G V+    ++      V 
Sbjct: 9   VPKRQRIRKLQIRNI------PPHLQ-----WEVLDSLLVQYGVVESCEQVNTDSETAVV 57

Query: 687 QIFFKEPEAADACRELLNGRWFGQRQI 713
            + +   + A    + LNG       +
Sbjct: 58  NVTYSSKDQARQALDKLNGFQLENFTL 84

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           + +  + V  L L  T+ +  EV  K G +          + +  D  ++  +G A   +
Sbjct: 13  DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              +    A    +G E+ G++I+V    
Sbjct: 65  ENVDDAKEAKERANGMELDGRRIRVSGPS 93

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 52.2 bits (126), Expect = 9e-09
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
              N  + V  L L  T+ +  EV  K G +          + +  D  ++  +G A   
Sbjct: 12  PDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVY 63

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +   +    A    +G E+ G++I+V    
Sbjct: 64  FENVDDAKEAKERANGMELDGRRIRVSGPS 93

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 374 QQDLREECSKCGHVKKV-VLHDKH---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
           ++DLRE  SK G +  V +++D+      G A ++F+  + A   +E  NG     R+I 
Sbjct: 29  ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 659 QQDLREECSKCGHVKKV-VLHDKH---PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
           ++DLRE  SK G +  V +++D+      G A ++F+  + A   +E  NG     R+I 
Sbjct: 29  ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 474 GEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533
           G ++           +     K   +  ++ + NLP   + ++  ++ ++  L       
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLE------ 55

Query: 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
                  ++   T+DF G     +  +E +  AL  L+  E RG  I VER 
Sbjct: 56  -----TTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
           P      + P       +  ++ + NLP   + ++  ++ ++  L              +
Sbjct: 16  PRGSHMSKLPA------KRYRITMKNLPEGCSWQDLKDLARENSLE-----------TTF 58

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
           +   T+DF G     +  +E +  AL  L+  E RG  I VER 
Sbjct: 59  SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 198 GQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
           G   K  P       E     YV NLP +  Q +   + +   +           ++L  
Sbjct: 4   GSSGKELPT------EPPYTAYVGNLPFNTVQGDIDAIFKDLSIR---------SVRLVR 48

Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           D  T  FKG     + + +S+  AL+  DG  +  + ++V+ A+
Sbjct: 49  DKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGDRSLRVDIAE 91

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 103

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
             YV NLP +  Q +   + +   +           ++L  D  T  FKG     + + +
Sbjct: 17  TAYVGNLPFNTVQGDIDAIFKDLSIR---------SVRLVRDKDTDKFKGFCYVEFDEVD 67

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
           S+  AL+  DG  +  + ++V+ A+
Sbjct: 68  SLKEALT-YDGALLGDRSLRVDIAE 91

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           A     +YV  L  ++  +         G +          I++  D  T+  +G A   
Sbjct: 4   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVE 55

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +   E    A+  ++  E+ G+ I+V  AK
Sbjct: 56  FELAEDAAAAIDNMNESELFGRTIRVNLAK 85

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +YV  L  ++  +         G +          I++  D  T+  +G A   +
Sbjct: 5   TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEF 56

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              E    A+  ++  E+ G+ I+V  AK
Sbjct: 57  ELAEDAAAAIDNMNESELFGRTIRVNLAK 85

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
            G      P             ++ NLP D+T+E   E  +   +           ++L 
Sbjct: 3   SGSSGSRLPK------SPPYTAFLGNLPYDVTEESIKEFFRGLNIS---------AVRLP 47

Query: 257 TDPYTKD-FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            +P   +  KG     +   +S+  ALS L+   +  K+I+V+ A 
Sbjct: 48  REPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLGNKRIRVDVAD 92

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-FKGDALCTYIKK 560
             ++ NLP D+T+E   E  +   +           ++L  +P   +  KG     +   
Sbjct: 17  TAFLGNLPYDVTEESIKEFFRGLNIS---------AVRLPREPSNPERLKGFGYAEFEDL 67

Query: 561 ESVDLALSILDGYEIRGKKIKVERAK 586
           +S+  ALS L+   +  K+I+V+ A 
Sbjct: 68  DSLLSALS-LNEESLGNKRIRVDVAD 92

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 179 SVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQK 238
              +  P    + E    P  K       +  +      VYV +     T ++ ++V++ 
Sbjct: 19  YFQSMEPPPPVRQEPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRS 78

Query: 239 CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 298
            G+   DV    +++K   +      KG A      + SV   L +L G  + G+K+ V 
Sbjct: 79  IGVY--DV----VELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132

Query: 299 RAK 301
            A 
Sbjct: 133 PAT 135

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Length = 156

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
              VYV +     T ++ ++V++  G+   DV    +++K   +      KG A      
Sbjct: 55  RAAVYVGSFSWWTTDQQLIQVIRSIGVY--DV----VELKFAENRANGQSKGYAEVVVAS 108

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
           + SV   L +L G  + G+K+ V  A 
Sbjct: 109 ENSVHKLLELLPGKVLNGEKVDVRPAT 135

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
               R   P             ++ NLP D+T+E   E  +   +           ++L 
Sbjct: 7   HHHHRSRLPK------SPPYTAFLGNLPYDVTEESIKEFFRGLNIS---------AVRLP 51

Query: 257 TDPYTKD-FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            +P   +  KG     +   +S+  ALS L+   +  ++I+V+ A 
Sbjct: 52  REPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLGNRRIRVDVAD 96

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-FKGDALCTYIKK 560
             ++ NLP D+T+E   E  +   +           ++L  +P   +  KG     +   
Sbjct: 21  TAFLGNLPYDVTEESIKEFFRGLNIS---------AVRLPREPSNPERLKGFGYAEFEDL 71

Query: 561 ESVDLALSILDGYEIRGKKIKVERAK 586
           +S+  ALS L+   +  ++I+V+ A 
Sbjct: 72  DSLLSALS-LNEESLGNRRIRVDVAD 96

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
                               ++YV +L  ++T++    + +  G +          I+L 
Sbjct: 8   HSHMAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLM 59

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            D  T   KG    T+   E    AL  L+G+E+ G+ +KV    
Sbjct: 60  MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
            ++YV +L  ++T++    + +  G +          I+L  D  T   KG    T+   
Sbjct: 27  MRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDS 78

Query: 561 ESVDLALSILDGYEIRGKKIKVERAK 586
           E    AL  L+G+E+ G+ +KV    
Sbjct: 79  ECAKKALEQLNGFELAGRPMKVGHVT 104

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 11/92 (11%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 209 FDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDA 268
            D+       +++N+P  +T+ + ++ ++   +           + +  D   +   G A
Sbjct: 9   GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENA-------VHVLVDNNGQ-GLGQA 60

Query: 269 LCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
           L  +  ++    +   L   ++ G++  V   
Sbjct: 61  LVQFKNEDDARKSER-LHRKKLNGREAFVHVV 91

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 10/91 (10%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
                    +++N+P  +T+ + ++ ++   +           + +  D   +   G AL
Sbjct: 10  DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENA-------VHVLVDNNGQ-GLGQAL 61

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERA 585
             +  ++    +   L   ++ G++  V   
Sbjct: 62  VQFKNEDDARKSER-LHRKKLNGREAFVHVV 91

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
             S+ +YV +L  ++T++    + +  G +          I L  D  T   KG    T+
Sbjct: 3   SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITF 54

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              E    AL  L+G+E+ G+ ++V    
Sbjct: 55  SDSECARRALEQLNGFELAGRPMRVGHVT 83

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
            ++ +YV +L  ++T++    + +  G +          I L  D  T   KG    T+ 
Sbjct: 4   GSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFS 55

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
             E    AL  L+G+E+ G+ ++V    
Sbjct: 56  DSECARRALEQLNGFELAGRPMRVGHVT 83

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G    ++YV NLP D+  ++  +V  K G + +D+D     +K             A   
Sbjct: 19  GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAI-RDID-----LKNRRGG-----PPFAFVE 67

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +      + A+   DGY+  G +++VE  +
Sbjct: 68  FEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
              + ++YV NLP D+  ++  +V  K G +          I L        F   A   
Sbjct: 19  GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKNRRGGPPF---AFVE 67

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +      + A+   DGY+  G +++VE  +
Sbjct: 68  FEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 337 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-HDK 395
               +RG    N+  I V NL        D+       +D+ +   K G ++ + L + +
Sbjct: 10  GGGVIRGPAGNNDCRIYVGNL------PPDIR-----TKDIEDVFYKYGAIRDIDLKNRR 58

Query: 396 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
                A + F++P  A+      +G  +   ++  E
Sbjct: 59  GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-HDK 680
               +RG    N+  I V NL        D+       +D+ +   K G ++ + L + +
Sbjct: 10  GGGVIRGPAGNNDCRIYVGNL------PPDIR-----TKDIEDVFYKYGAIRDIDLKNRR 58

Query: 681 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
                A + F++P  A+      +G  +   ++  E
Sbjct: 59  GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E +  +Y+ NLP  +T EE  ++  K G + +        I++   P T+     A   Y
Sbjct: 6   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNTPETRGT---AYVVY 54

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
                   A+  L G+ +  + + V              +   K   KK  E+LK  +EK
Sbjct: 55  EDIFDAKNAVDHLSGFNVSNRYLVVLYYN--------ANRAFQKMDTKKKEEQLKLLKEK 106

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           + N  +Y+ NLP  +T EE  ++  K G + +        I++   P T+     A   Y
Sbjct: 6   EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNTPETRGT---AYVVY 54

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 617
                   A+  L G+ +  + + V              +   K   KK  E+LK  +EK
Sbjct: 55  EDIFDAKNAVDHLSGFNVSNRYLVVLYYN--------ANRAFQKMDTKKKEEQLKLLKEK 106

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 16/116 (13%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-HDKHPEGVAQIFFKEPEA 695
           + ++NL         +T      +++ +   K G ++++ + +     G A + +++   
Sbjct: 11  LYIRNL------PYKIT-----AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFD 59

Query: 696 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLEEEDKKK 751
           A    + L+G     R +    ++    ++  +T ++ E      E +    D  K
Sbjct: 60  AKNAVDHLSGFNVSNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 115

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +YV  L  ++  +         G +          I++  D  T+  +G A   +
Sbjct: 61  TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEF 112

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
              E    A+  ++  E+ G+ I+V  A
Sbjct: 113 ELAEDAAAAIDNMNESELFGRTIRVNLA 140

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 475 EAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 534
                +                A     +YV  L  ++  +         G +       
Sbjct: 38  CVNCTERHVDGGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD----- 92

Query: 535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
              I++  D  T+  +G A   +   E    A+  ++  E+ G+ I+V  A
Sbjct: 93  ---IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +YV  L  ++  +         G +          I++  D  T+  +G A   +
Sbjct: 10  TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEF 61

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              E    A+  ++  E+ G+ I+V  AK
Sbjct: 62  ELAEDAAAAIDNMNESELFGRTIRVNLAK 90

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           A     +YV  L  ++  +         G +          I++  D  T+  +G A   
Sbjct: 9   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVE 60

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +   E    A+  ++  E+ G+ I+V  AK
Sbjct: 61  FELAEDAAAAIDNMNESELFGRTIRVNLAK 90

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 489 KDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD 548
           +D    KK +    +   NL  ++T++E  EV +    +       +             
Sbjct: 5   EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGK------------- 51

Query: 549 FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            KG A   +  +   +  L    G EI G+ + +    
Sbjct: 52  SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 96

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 204 EPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD 263
           E P        +  +   NL  ++T++E  EV +    +       +             
Sbjct: 5   EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGK------------- 51

Query: 264 FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            KG A   +  +   +  L    G EI G+ + +    
Sbjct: 52  SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 199 QKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 258
            +   E         E   ++V+++  +  ++E  E     G +          I L  D
Sbjct: 56  NEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLD 107

Query: 259 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
             T   KG AL  Y   +    A   L+G EI G+ I+V+   
Sbjct: 108 RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           ++ E   ++V+++  +  ++E  E     G +          I L  D  T   KG AL 
Sbjct: 68  RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALV 119

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            Y   +    A   L+G EI G+ I+V+   
Sbjct: 120 EYETHKQALAAKEALNGAEIMGQTIQVDWCF 150

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +  K++V  L  D  ++   +V  K G + +        + +  D  T+  +G    T+
Sbjct: 10  SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTF 61

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              +    A+  ++G  + G++I+V++A 
Sbjct: 62  ENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           A +  K++V  L  D  ++   +V  K G + +        + +  D  T+  +G    T
Sbjct: 9   ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVT 60

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +   +    A+  ++G  + G++I+V++A 
Sbjct: 61  FENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 194 KVVPGQKRKPEPPKWF-----------DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLV 242
           +  P  + KP P KW            +  E   K+ VSNL   ++  +  E+  + G +
Sbjct: 56  RPAPYSRPKPLPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTL 115

Query: 243 MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                    K  +  D  +    G A   + ++     A+    G  + G+ + ++   
Sbjct: 116 --------KKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 479 PKLKPKKKRKKDLEKLKKAQEN----TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 534
           PK  P K +    +      E      K+ VSNL   ++  +  E+  + G +       
Sbjct: 63  PKPLPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTL------- 115

Query: 535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             K  +  D  +    G A   + ++     A+    G  + G+ + ++   
Sbjct: 116 -KKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 340 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-DK--H 396
              GE  +  + ++V NL      D  V+       D++E  ++ G +KK  +  D+   
Sbjct: 79  CGGGEGVETGAKLLVSNL------DFGVS-----DADIQELFAEFGTLKKAAVDYDRSGR 127

Query: 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453
             G A + F+    A    +   G     R +           ++  +  + E    
Sbjct: 128 SLGTADVHFERRADALKAMKQYKGVPLDGRPM---------DIQLVASQIDLEHHHH 175

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 625 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-DK--H 681
              GE  +  + ++V NL      D  V+       D++E  ++ G +KK  +  D+   
Sbjct: 79  CGGGEGVETGAKLLVSNL------DFGVS-----DADIQELFAEFGTLKKAAVDYDRSGR 127

Query: 682 PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
             G A + F+    A    +   G     R +           ++  +  + E    
Sbjct: 128 SLGTADVHFERRADALKAMKQYKGVPLDGRPM---------DIQLVASQIDLEHHHH 175

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
             ++ K+++  +P +L +++   + ++ G +         ++ +  D +T   KG A  T
Sbjct: 10  DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKI--------YELTVLKDRFTGMHKGCAFLT 61

Query: 272 YIKKESVDLALSILDGYEIR---GKKIKVERAK 301
           Y ++ES   A S L   +      + I+V+ A 
Sbjct: 62  YCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Length = 106

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           K  +  K+++  +P +L +++   + ++ G +         ++ +  D +T   KG A  
Sbjct: 9   KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKI--------YELTVLKDRFTGMHKGCAFL 60

Query: 556 TYIKKESVDLALSILDGYEIR---GKKIKVERAK 586
           TY ++ES   A S L   +      + I+V+ A 
Sbjct: 61  TYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
              T  Y+ N+P   T+ + + + Q  G +        +  K Y +      KG     Y
Sbjct: 25  PRVTTAYIGNIPHFATEADLIPLFQNFGFI--------LDFKHYPE------KGCCFIKY 70

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
              E   + +  L  +  +G+ ++    K
Sbjct: 71  DTHEQAAVCIVALANFPFQGRNLRTGWGK 99

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
            T  Y+ N+P   T+ + + + Q  G ++          K Y +      KG     Y  
Sbjct: 27  VTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHYPE------KGCCFIKYDT 72

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            E   + +  L  +  +G+ ++    K
Sbjct: 73  HEQAAVCIVALANFPFQGRNLRTGWGK 99

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 15/92 (16%)

Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH 396
            D +        +   + N+          T     + DL       G +       +K 
Sbjct: 16  VDHIIRSAPPRVTTAYIGNI------PHFAT-----EADLIPLFQNFGFILDFKHYPEK- 63

Query: 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
             G   I +   E A  C   L    F  R +
Sbjct: 64  --GCCFIKYDTHEQAAVCIVALANFPFQGRNL 93

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 15/92 (16%)

Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKH 681
            D +        +   + N+          T     + DL       G +       +K 
Sbjct: 16  VDHIIRSAPPRVTTAYIGNI------PHFAT-----EADLIPLFQNFGFILDFKHYPEK- 63

Query: 682 PEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
             G   I +   E A  C   L    F  R +
Sbjct: 64  --GCCFIKYDTHEQAAVCIVALANFPFQGRNL 93

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 198 GQKRKPEPPKW----FDIG-------EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDV 246
           GQ+   +P KW    FD G       E   K+ VSNL   ++  +  E+  + G +    
Sbjct: 7   GQQMGRDPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTL---- 62

Query: 247 DTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                K  +  D  +    G A   + ++     A+    G  + G+ + ++   
Sbjct: 63  ----KKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
            +   K+ VSNL   ++  +  E+  + G +         K  +  D  +    G A   
Sbjct: 32  VETGAKLLVSNLDFGVSDADIQELFAEFGTL--------KKAAVDYDR-SGRSLGTADVH 82

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           + ++     A+    G  + G+ + ++   
Sbjct: 83  FERRADALKAMKQYKGVPLDGRPMDIQLVA 112

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 25/129 (19%)

Query: 328 KAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV 387
           K Q  LFD       GE  +  + ++V NL      D  V+       D++E  ++ G +
Sbjct: 16  KWQHDLFDSGC--GGGEGVETGAKLLVSNL------DFGVS-----DADIQELFAEFGTL 62

Query: 388 KKVVLH-DK--HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQET 444
           KK  +  D+     G A + F+    A    +   G     R +           ++  +
Sbjct: 63  KKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM---------DIQLVAS 113

Query: 445 AEEREARLK 453
             + E    
Sbjct: 114 QIDLEHHHH 122

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 25/129 (19%)

Query: 613 KAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV 672
           K Q  LFD       GE  +  + ++V NL      D  V+       D++E  ++ G +
Sbjct: 16  KWQHDLFDSGC--GGGEGVETGAKLLVSNL------DFGVS-----DADIQELFAEFGTL 62

Query: 673 KKVVLH-DK--HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQET 729
           KK  +  D+     G A + F+    A    +   G     R +           ++  +
Sbjct: 63  KKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM---------DIQLVAS 113

Query: 730 AEEREARLK 738
             + E    
Sbjct: 114 QIDLEHHHH 122

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 18/102 (17%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
              +YV NL  D+T+   +++  + G             K+ T+  +          + +
Sbjct: 15  PRTLYVGNLSRDVTEVLILQLFSQIGPC--------KSCKMITEHTSN--DPYCFVEFYE 64

Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 601
                 AL+ ++G +I GK++KV          A  P  +  
Sbjct: 65  HRDAAAALAAMNGRKILGKEVKV--------NWATTPSSQKS 98

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 18/102 (17%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
              +YV NL  D+T+   +++  + G             K+ T+  +          + +
Sbjct: 15  PRTLYVGNLSRDVTEVLILQLFSQIGPC--------KSCKMITEHTSN--DPYCFVEFYE 64

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 316
                 AL+ ++G +I GK++KV          A  P  +  
Sbjct: 65  HRDAAAALAAMNGRKILGKEVKV--------NWATTPSSQKS 98

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
             K+Y+ NL   +T ++  ++     L +                      G A   Y  
Sbjct: 8   MNKLYIGNLSPAVTADDLRQLFGDRKLPL-AGQVLLK-------------SGYAFVDYPD 53

Query: 560 KESVDLALSILDG-YEIRGKKIKVERAK 586
           +     A+  L G  E+ GK ++V+ + 
Sbjct: 54  QNWAIRAIETLSGKVELHGKIMEVDYSV 81

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
               K+Y+ NL   +T ++  ++     L +                      G A   Y
Sbjct: 6   SGMNKLYIGNLSPAVTADDLRQLFGDRKLPL-AGQVLLK-------------SGYAFVDY 51

Query: 273 IKKESVDLALSILDG-YEIRGKKIKVERAK 301
             +     A+  L G  E+ GK ++V+ + 
Sbjct: 52  PDQNWAIRAIETLSGKVELHGKIMEVDYSV 81

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 14/91 (15%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLV-MKDVDTNQMKIKLYTDPYTKDFKGDALC 270
             ES  + +SNL    T+E   EV +K   + +      + K             G A  
Sbjct: 12  SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK-------------GYAFI 58

Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            +   E    AL+  +  EI G+ I++E   
Sbjct: 59  EFASFEDAKEALNSCNKREIEGRAIRLELQG 89

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLV-MKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            + E+  + +SNL    T+E   EV +K   + +      + K             G A 
Sbjct: 11  WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSK-------------GYAF 57

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +   E    AL+  +  EI G+ I++E   
Sbjct: 58  IEFASFEDAKEALNSCNKREIEGRAIRLELQG 89

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTY 272
           + TKV++  L  ++T++  +E+    G +          I +  +  +    KG A   +
Sbjct: 3   KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEF 54

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              +  + AL  +DG +I G++I      
Sbjct: 55  ENPDEAEKALKHMDGGQIDGQEITATAVL 83

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTY 557
           + TKV++  L  ++T++  +E+    G +          I +  +  +    KG A   +
Sbjct: 3   KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEF 54

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
              +  + AL  +DG +I G++I      
Sbjct: 55  ENPDEAEKALKHMDGGQIDGQEITATAVL 83

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 488 KKDLEKLKKAQENTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDP 544
                 ++  Q+N  V+V  L   L   E +   E   K G + K        + +    
Sbjct: 4   GSSGASVRVVQKNL-VFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNST 54

Query: 545 YTKDFKGDALC---TYIKKESVDLALSILDGYEIRGKKIKVERA 585
                +G +     TYI+ E    A+  ++   + G+ +K    
Sbjct: 55  SYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 14/89 (15%)

Query: 218 VYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC---T 271
           V+V  L   L   E +   E   K G + K        + +         +G +     T
Sbjct: 18  VFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVT 69

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERA 300
           YI+ E    A+  ++   + G+ +K    
Sbjct: 70  YIRSEDALRAIQCVNNVVVDGRTLKASLG 98

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 378 REECSKCGHVKKVVL-------HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 430
            E   K G + KVV+         + P   A + +   E A    + +N      R + A
Sbjct: 36  PEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95

Query: 431 ETWDGKTRY 439
               G T+Y
Sbjct: 96  S--LGTTKY 102

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 663 REECSKCGHVKKVVL-------HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 715
            E   K G + KVV+         + P   A + +   E A    + +N      R + A
Sbjct: 36  PEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95

Query: 716 ETWDGKTRY 724
               G T+Y
Sbjct: 96  S--LGTTKY 102

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 189 PKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 248
           P+          ++               V +  LP   T+EE V+      +V      
Sbjct: 16  PRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG--- 72

Query: 249 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
               I L  DP  K   G+A   +  +E  + AL       I  + I+V ++ 
Sbjct: 73  ----ITLPVDPEGK-ITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSS 119

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Length = 126

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
            +  +  V +  LP   T+EE V+      +V          I L  DP  K   G+A  
Sbjct: 38  DSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG-------ITLPVDPEGK-ITGEAFV 89

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +  +E  + AL       I  + I+V ++ 
Sbjct: 90  QFASQELAEKALG-KHKERIGHRYIEVFKSS 119

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 18/108 (16%)

Query: 199 QKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKI 253
           + RK      ++ GE +  +Y+ NL   +T+ + V +  +        +   + T +M+ 
Sbjct: 9   EIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR- 67

Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                       G A  T+  KE    AL +++GY++ GK + +E  K
Sbjct: 68  ------------GQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 18/99 (18%)

Query: 493 KLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTK 547
                + N  +Y+ NL   +T+ + V +  +        +   + T +M+          
Sbjct: 18  SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR---------- 67

Query: 548 DFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
              G A  T+  KE    AL +++GY++ GK + +E  K
Sbjct: 68  ---GQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 31/127 (24%)

Query: 480 KLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIK 539
            L P+       ++      NT+++V   PLD+ + E  E+    G +       ++KI 
Sbjct: 13  GLVPRGSHMHHRQE--GELSNTRLFVRPFPLDVQESELNEIFGPFGPM------KEVKIL 64

Query: 540 LYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLK 599
                      G A   + + ES   A+  + G     + ++V  +             K
Sbjct: 65  ----------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS-------------K 101

Query: 600 PKKKRKK 606
              KR +
Sbjct: 102 LPAKRYR 108

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 30/125 (24%)

Query: 198 GQKRKPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
           G   +         GE  +T+++V   PLD+ + E  E+    G +       ++KI   
Sbjct: 13  GLVPRGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPM------KEVKIL-- 64

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 316
                    G A   + + ES   A+  + G     + ++V  +             K  
Sbjct: 65  --------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS-------------KLP 103

Query: 317 KKRKK 321
            KR +
Sbjct: 104 AKRYR 108

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 10/93 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                + + N+      +  +  +                I+L  D  T+  +G A    
Sbjct: 7   HHMDTIILRNIAPHTVVDSIMTALSPYA------SLAVNNIRLIKDKQTQQNRGFAFVQL 60

Query: 273 IKKESVDLALSILDGYE----IRGKKIKVERAK 301
                    L IL        I GK I V+ AK
Sbjct: 61  SSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Length = 95

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 10/93 (10%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
                + + N+      +  +  +                I+L  D  T+  +G A    
Sbjct: 7   HHMDTIILRNIAPHTVVDSIMTALSPYA------SLAVNNIRLIKDKQTQQNRGFAFVQL 60

Query: 558 IKKESVDLALSILDGYE----IRGKKIKVERAK 586
                    L IL        I GK I V+ AK
Sbjct: 61  SSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTKDFKGDA 268
            S+ +++ NL    T+E    V  K G      + K  +   + +            G  
Sbjct: 4   GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL----------SMGFG 53

Query: 269 LCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
              Y K E    AL  L G+ + G K++V  ++
Sbjct: 54  FVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTKDFKGDA 553
            ++ +++ NL    T+E    V  K G      + K  +   + +            G  
Sbjct: 4   GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL----------SMGFG 53

Query: 554 LCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
              Y K E    AL  L G+ + G K++V  ++
Sbjct: 54  FVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
              K+ + +    + + +N  VY   +   LT +   +     G +        M+I+++
Sbjct: 7   GNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI--------MEIRVF 58

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +      KG +   +   ES   A+  ++G  I G  +K    K
Sbjct: 59  PE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 198 GQKRKPEPPKWFDIGEES----TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
           G     +  ++ D+  +S      VY   +   LT +   +     G +M+        I
Sbjct: 4   GSSGNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------I 55

Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +++ +      KG +   +   ES   A+  ++G  I G  +K    K
Sbjct: 56  RVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G E   +++ +LP + T  +        G V+          K++ D  T   K     +
Sbjct: 37  GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVS 88

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +   +S  +A+  ++G+++  K++KV+  K
Sbjct: 89  FDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           E   +++ +LP + T  +        G V+          K++ D  T   K     ++ 
Sbjct: 39  EGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFD 90

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
             +S  +A+  ++G+++  K++KV+  K
Sbjct: 91  NPDSAQVAIKAMNGFQVGTKRLKVQLKK 118

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
            +Y+ NL    T E+  E +   G+   D+    ++IK + +      KG AL     + 
Sbjct: 3   ALYIGNLTWWTTDEDLTEAVHSLGVN--DI----LEIKFFENRANGQSKGFALVGVGSEA 56

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
           S    + +L   E+ G+   V  + 
Sbjct: 57  SSKKLMDLLPKRELHGQNPVVTPSN 81

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Length = 90

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
            +Y+ NL    T E+  E +   G+   D+    ++IK + +      KG AL     + 
Sbjct: 3   ALYIGNLTWWTTDEDLTEAVHSLGVN--DI----LEIKFFENRANGQSKGFALVGVGSEA 56

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
           S    + +L   E+ G+   V  + 
Sbjct: 57  SSKKLMDLLPKRELHGQNPVVTPSN 81

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 16/90 (17%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G+ STK++V N+    T +E     ++ G V  + D     I        KD+   A   
Sbjct: 7   GKASTKLHVGNISPTCTNQELRAKFEEYGPV-IECD-----IV-------KDY---AFVH 50

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
             + E    A+  LD  E +GK++ V+ + 
Sbjct: 51  MERAEDAVEAIRGLDNTEFQGKRMHVQLST 80

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
             + +TK++V N+    T +E     ++ G V  + D     I        KD+   A  
Sbjct: 6   SGKASTKLHVGNISPTCTNQELRAKFEEYGPV-IECD-----IV-------KDY---AFV 49

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
              + E    A+  LD  E +GK++ V+ + 
Sbjct: 50  HMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
                 V +  LP   ++EE V+      +V          + L  D   +   G+A   
Sbjct: 12  TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVDFQGR-STGEAFVQ 63

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  +E  + AL       I  + I++ ++ 
Sbjct: 64  FASQEIAEKALK-KHKERIGHRYIEIFKSS 92

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
               +  V +  LP   ++EE V+      +V          + L  D   +   G+A  
Sbjct: 11  DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVDFQGR-STGEAFV 62

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +  +E  + AL       I  + I++ ++ 
Sbjct: 63  QFASQEIAEKALK-KHKERIGHRYIEIFKSS 92

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           +V VS LP   + ++  + M++ G V    D  +               G  +  +++KE
Sbjct: 17  RVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYR--------------DGTGVVEFVRKE 61

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
            +  A+  LD  + R  + +    +
Sbjct: 62  DMTYAVRKLDNTKFRSHEGETAYIR 86

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           +V VS LP   + ++  + M++ G V    D  +               G  +  +++KE
Sbjct: 17  RVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYR--------------DGTGVVEFVRKE 61

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
            +  A+  LD  + R  + +    +
Sbjct: 62  DMTYAVRKLDNTKFRSHEGETAYIR 86

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 16/91 (17%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
            +    K++V N+    T +E   + ++ G V  + D     +        KD+   A  
Sbjct: 5   SSGNTWKIFVGNVSAACTSQELRSLFERRGRV-IECD-----VV-------KDY---AFV 48

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
              K+     A++ L+G E++GK+I VE + 
Sbjct: 49  HMEKEADAKAAIAQLNGKEVKGKRINVELST 79

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 16/89 (17%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
             + K++V N+    T +E   + ++ G V  + D     +        KD+   A    
Sbjct: 7   GNTWKIFVGNVSAACTSQELRSLFERRGRV-IECD-----VV-------KDY---AFVHM 50

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            K+     A++ L+G E++GK+I VE + 
Sbjct: 51  EKEADAKAAIAQLNGKEVKGKRINVELST 79

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G   + V+V+NL   +  ++  EV    G+V        ++  +  D   K  +G    T
Sbjct: 12  GRLGSTVFVANLDYKVGWKKLKEVFSMAGVV--------VRADILEDKDGKS-RGIGTVT 62

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 316
           + +      A+S+ +G  +  + + V+  +  +    + P  +P+
Sbjct: 63  FEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQ 107

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 494 LKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDA 553
           L+  +  + V+V+NL   +  ++  EV    G+V        ++  +  D   K  +G  
Sbjct: 9   LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVV--------VRADILEDKDGKS-RGIG 59

Query: 554 LCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 601
             T+ +      A+S+ +G  +  + + V+  +  +    + P  +P+
Sbjct: 60  TVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQ 107

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
               +++VSN+P      +  ++  + G ++         +++  +      KG    T+
Sbjct: 13  STPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNERGS--KGFGFVTF 62

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
                 D A   L G  + G+KI+V  A 
Sbjct: 63  ENSADADRAREKLHGTVVEGRKIEVNNAT 91

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +      +++VSN+P      +  ++  + G ++         +++  +      KG   
Sbjct: 10  ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNERGS--KGFGF 59

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            T+      D A   L G  + G+KI+V  A 
Sbjct: 60  VTFENSADADRAREKLHGTVVEGRKIEVNNAT 91

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
            GQKR           E    VY+  LP +   +  ++  +K  +V          I + 
Sbjct: 11  SGQKRSRSRSP----HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS-------IYIA 59

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
             P  K   G+    +  +     AL       +  + I+V   
Sbjct: 60  YGPNGK-ATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 124

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 9/103 (8%)

Query: 483 PKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 542
                +K        +    VY+  LP +   +  ++  +K  +V          I +  
Sbjct: 8   KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS-------IYIAY 60

Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
            P  K   G+    +  +     AL       +  + I+V   
Sbjct: 61  GPNGK-ATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMK---DVDTNQMKIKLYTDPYTKDFKGDALCT 271
           + +++V NLP D T +   +   +CG V+     ++  + K             G  +  
Sbjct: 8   ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSK-------------GCGVVK 54

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 308
           +   E  + A  +++G ++ G++I V   +      +
Sbjct: 55  FESPEVAERACRMMNGMKLSGREIDVRIDRNASGPSS 91

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMK---DVDTNQMKIKLYTDPYTKDFKGDALCT 556
             +++V NLP D T +   +   +CG V+     ++  + K             G  +  
Sbjct: 8   ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSK-------------GCGVVK 54

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
           +   E  + A  +++G ++ G++I V   +      +
Sbjct: 55  FESPEVAERACRMMNGMKLSGREIDVRIDRNASGPSS 91

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G E   +++ +LP +   ++ +++    G V+          K++ D  T   K     +
Sbjct: 22  GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVS 73

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           Y    S   A+  ++G++I  K++KV+  +
Sbjct: 74  YDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K+  E   +++ +LP +   ++ +++    G V+          K++ D  T   K    
Sbjct: 20  KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGF 71

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +Y    S   A+  ++G++I  K++KV+  +
Sbjct: 72  VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
            G   KP P        +   V V  +P    + +  +      +           + L 
Sbjct: 3   SGSSGKPLPIN-----PDDLYVSVHGMPFSAMENDVRDFFHGLRVD---------AVHLL 48

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            D   +   G+ L  ++  +    AL   +   +  + ++V  A 
Sbjct: 49  KDHVGR-NNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 109

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 492 EKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 551
           + L    ++  V V  +P    + +  +      +           + L  D   +   G
Sbjct: 8   KPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD---------AVHLLKDHVGR-NNG 57

Query: 552 DALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
           + L  ++  +    AL   +   +  + ++V  A 
Sbjct: 58  NGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPAT 91

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 14/92 (15%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           D       +YV NL L  ++E   +                 KI+ Y           A 
Sbjct: 10  DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG---AVERVKKIRDY-----------AF 55

Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
             +  +E    A+  L+G  + G  I+V  AK
Sbjct: 56  VHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
                 +YV NL L  ++E   +                 KI+ Y           A   
Sbjct: 12  MSSVKILYVRNLMLSTSEEMIEKEFNNIKPG---AVERVKKIRDY-----------AFVH 57

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +  +E    A+  L+G  + G  I+V  AK
Sbjct: 58  FSNREDAVEAMKALNGKVLDGSPIEVTLAK 87

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 29/118 (24%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +   ++V NL   +T+E   +   + G + +      +K         KD+   A   +
Sbjct: 9   AKVKVLFVRNLANTVTEEILEKAFSQFGKLER------VKKL-------KDY---AFIHF 52

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 330
            +++    A+  ++G ++ G+ I++  A             KP  +++K+ +  ++A 
Sbjct: 53  DERDGAVKAMEEMNGKDLEGENIEIVFA-------------KPPDQKRKERKAQRQAA 97

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/117 (16%), Positives = 49/117 (41%), Gaps = 29/117 (24%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +   ++V NL   +T+E   +   + G + +      +K         KD+   A   + 
Sbjct: 10  KVKVLFVRNLANTVTEEILEKAFSQFGKLER------VKKL-------KDY---AFIHFD 53

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 615
           +++    A+  ++G ++ G+ I++  A             KP  +++K+ +  ++A 
Sbjct: 54  ERDGAVKAMEEMNGKDLEGENIEIVFA-------------KPPDQKRKERKAQRQAA 97

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
            + S  ++V  L  D T+E   E                 + ++ TD  T   KG     
Sbjct: 12  SQPSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGFVD 60

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  +E    A   ++  EI G K+ ++ AK
Sbjct: 61  FNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 102

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            ++Q +  ++V  L  D T+E   E                 + ++ TD  T   KG   
Sbjct: 10  ARSQPSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGF 58

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +  +E    A   ++  EI G K+ ++ AK
Sbjct: 59  VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           +++ K++V  +  D+  +EF E   + G +        +  +L  D  T   +G    TY
Sbjct: 85  DKTGKIFVGGIGPDVRPKEFEEFFSQWGTI--------IDAQLMLDKDTGQSRGFGFVTY 136

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
              ++VD         + + +KI+++RA
Sbjct: 137 DSADAVDRVCQ-NKFIDFKDRKIEIKRA 163

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            +  +  K++V  +  D+  +EF E   + G +        +  +L  D  T   +G   
Sbjct: 82  DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTI--------IDAQLMLDKDTGQSRGFGF 133

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERA 585
            TY   ++VD         + + +KI+++RA
Sbjct: 134 VTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 43/217 (19%), Positives = 67/217 (30%), Gaps = 69/217 (31%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           +ES K+++  L  D T++   E   K G V    D   MK     DP T   +G    ++
Sbjct: 1   KESCKMFIGGLNWDTTEDNLREYFGKYGTV---TDLKIMK-----DPATGRSRGFGFLSF 52

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
            K  SVD  +     + + GK I  +RA          P+ +  K  K            
Sbjct: 53  EKPSSVDEVVK--TQHILDGKVIDPKRAI---------PRDEQDKTGK------------ 89

Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 392
                              I V  +        DV       ++  E  S+ G +    L
Sbjct: 90  -------------------IFVGGI------GPDVR-----PKEFEEFFSQWGTIIDAQL 119

Query: 393 -HDKH---PEGVAQIFFKEPEAADACREL----LNGR 421
             DK      G   + +   +A D   +        R
Sbjct: 120 MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDR 156

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 42/217 (19%), Positives = 67/217 (30%), Gaps = 69/217 (31%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           +E+ K+++  L  D T++   E   K G V    D   MK     DP T   +G    ++
Sbjct: 1   KESCKMFIGGLNWDTTEDNLREYFGKYGTV---TDLKIMK-----DPATGRSRGFGFLSF 52

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 617
            K  SVD  +     + + GK I  +RA          P+ +  K  K            
Sbjct: 53  EKPSSVDEVVK--TQHILDGKVIDPKRAI---------PRDEQDKTGK------------ 89

Query: 618 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 677
                              I V  +        DV       ++  E  S+ G +    L
Sbjct: 90  -------------------IFVGGI------GPDVR-----PKEFEEFFSQWGTIIDAQL 119

Query: 678 -HDKH---PEGVAQIFFKEPEAADACREL----LNGR 706
             DK      G   + +   +A D   +        R
Sbjct: 120 MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDR 156

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           KVYV NL     + E        G + + V      I        ++  G A   +    
Sbjct: 2   KVYVGNLGTGAGKGELERAFSYYGPL-RTVW-----IA-------RNPPGFAFVEFEDPR 48

Query: 277 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRK 320
             + A+  LDG  I G +++VE +    +   +D   +P  +RK
Sbjct: 49  DAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFD---RPPARRK 89

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           KVYV NL     + E        G + + V      I        ++  G A   +    
Sbjct: 2   KVYVGNLGTGAGKGELERAFSYYGPL-RTVW-----IA-------RNPPGFAFVEFEDPR 48

Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRK 605
             + A+  LDG  I G +++VE +    +   +D   +P  +RK
Sbjct: 49  DAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFD---RPPARRK 89

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 188 NPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVD 247
           +         G  R    P        S  +++  LP+D+T+ E + +    G V     
Sbjct: 12  SGLVPRGSHMGDSRSAGVP--------SRVIHIRKLPIDVTEGEVISLGLPFGKV----- 58

Query: 248 TNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS--ILDGYEIRGKKIKVERAK 301
                + +         K  A      +E+ +  ++        +RG+ I ++ + 
Sbjct: 59  ---TNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 119

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 17/106 (16%)

Query: 484 KKKRKKDLEKLKKAQENTKV-YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 542
              R   +   + A   ++V ++  LP+D+T+ E + +    G V          + +  
Sbjct: 14  LVPRGSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKV--------TNLLMLK 65

Query: 543 DPYTKDFKGDALCTYIKKESVDLALS--ILDGYEIRGKKIKVERAK 586
                  K  A      +E+ +  ++        +RG+ I ++ + 
Sbjct: 66  G------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 66/215 (30%)

Query: 375 QDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 430
           + LR    + G +   V+    + K   G   + +   E  DA                 
Sbjct: 28  ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---------------- 71

Query: 431 ETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKD 490
                            R  ++       G+ ++ +RA                   ++D
Sbjct: 72  --------------MNARPHKVD------GRVVEPKRAV-----------------SRED 94

Query: 491 LEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFK 550
            ++        K++V  +  D  +    +  ++ G +          I++ TD  +   +
Sbjct: 95  SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI--------EVIEIMTDRGSGKKR 146

Query: 551 GDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
           G A  T+   +SVD  +     + + G   +V +A
Sbjct: 147 GFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 200 KRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP 259
           +   + P          K++V  +  D  +    +  ++ G +          I++ TD 
Sbjct: 92  REDSQRPGAH---LTVKKIFVGGIKEDTEEHHLRDYFEQYGKI--------EVIEIMTDR 140

Query: 260 YTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
            +   +G A  T+   +SVD  +     + + G   +V +A
Sbjct: 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 483 PKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 542
            K +  K+ E+L+K      +++  L  + T E      ++ G +    D   M+     
Sbjct: 2   SKSESPKEPEQLRK------LFIGGLSFETTDESLRSHFEQWGTL---TDCVVMR----- 47

Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKK 602
           DP TK  +G    TY   E VD A++    +++ G+ ++ +RA      +     L  KK
Sbjct: 48  DPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 106

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E+  K+++  L  + T E      ++ G +    D   M+     DP TK  +G    TY
Sbjct: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTL---TDCVVMR-----DPNTKRSRGFGFVTY 62

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKK 317
              E VD A++    +++ G+ ++ +RA      +     L  KK
Sbjct: 63  ATVEEVDAAMN-ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK 106

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
            +YV NL    T E+  E+  + G V          +KL  D  TK  KG       ++E
Sbjct: 3   NIYVGNLVYSATSEQVKELFSQFGKV--------FNVKLIYDRETKKPKGFGFVEM-QEE 53

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
           SV  A++ LD  +  G+ I+V  A 
Sbjct: 54  SVSEAIAKLDNTDFMGRTIRVTEAN 78

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
            +YV NL    T E+  E+  + G V          +KL  D  TK  KG       ++E
Sbjct: 3   NIYVGNLVYSATSEQVKELFSQFGKV--------FNVKLIYDRETKKPKGFGFVEM-QEE 53

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
           SV  A++ LD  +  G+ I+V  A 
Sbjct: 54  SVSEAIAKLDNTDFMGRTIRVTEAN 78

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G     V +   P ++T++  +E +     V          I++  + +     G     
Sbjct: 7   GTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV---------AIRIVRNAHGN-KTGYIFVD 56

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  +E V  AL   +   + G+ I+V R K
Sbjct: 57  FSNEEEVKQALK-CNREYMGGRYIEVFREK 85

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 91

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
                  V +   P ++T++  +E +     V          I++  + +     G    
Sbjct: 6   SGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV---------AIRIVRNAHGN-KTGYIFV 55

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +  +E V  AL   +   + G+ I+V R K
Sbjct: 56  DFSNEEEVKQALK-CNREYMGGRYIEVFREK 85

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 198 GQKRKPEPPKW----FDIG-------EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDV 246
           G + K  P KW    FD G       E   K+ VSNL   ++  +  E+  + G +    
Sbjct: 1   GSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTL---- 56

Query: 247 DTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
                K  ++ D  +    G A   + +K     A+   +G  + G+ + ++  
Sbjct: 57  ----KKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 479 PKLKPKKKRKKDLEKLKK----AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 534
           PK  P K +    +         +   K+ VSNL   ++  +  E+  + G +       
Sbjct: 4   PKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTL------- 56

Query: 535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
             K  ++ D  +    G A   + +K     A+   +G  + G+ + ++  
Sbjct: 57  -KKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 319 RKKDLEKLKKAQEKLFDWRPDKMRGERSKNESV-IIVKNLFDPALFDKDVTLILEYQQDL 377
           R K L    K Q  LFD       G         ++V NL      D  V+       D+
Sbjct: 3   RPKQLPD--KWQHDLFD---SGFGGGAGVETGGKLLVSNL------DFGVS-----DADI 46

Query: 378 REECSKCGHVKKVVLH-DK--HPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
           +E  ++ G +KK  +H D+     G A + F+    A    +  NG     R +
Sbjct: 47  QELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 604 RKKDLEKLKKAQEKLFDWRPDKMRGERSKNESV-IIVKNLFDPALFDKDVTLILEYQQDL 662
           R K L    K Q  LFD       G         ++V NL      D  V+       D+
Sbjct: 3   RPKQLPD--KWQHDLFD---SGFGGGAGVETGGKLLVSNL------DFGVS-----DADI 46

Query: 663 REECSKCGHVKKVVLH-DK--HPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
           +E  ++ G +KK  +H D+     G A + F+    A    +  NG     R +
Sbjct: 47  QELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 486 KRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY 545
             +      +   +  +++VSN+P      +  ++  + G +        + +++  +  
Sbjct: 15  VPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKI--------LDVEIIFNER 66

Query: 546 TKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
               KG    T+      D A   L G  + G+KI+V  A 
Sbjct: 67  GS--KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +  +++VSN+P      +  ++  + G ++         +++  +      KG    T+
Sbjct: 27  SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNERGS--KGFGFVTF 76

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
                 D A   L G  + G+KI+V  A 
Sbjct: 77  ENSADADRAREKLHGTVVEGRKIEVNNAT 105

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 14/118 (11%)

Query: 492 EKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 551
                 +  T +   NLP      E  E   + G            +     P       
Sbjct: 2   SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFG-----------SLGRVLLPEGGIT-- 48

Query: 552 DALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE 609
            A+  +++      A   L   +     + +E A   + G A   K    ++  +  E
Sbjct: 49  -AIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAE 105

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 26/131 (19%)

Query: 625 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEG 684
                RSK   VI+ KNL                  +++E  S+ G + +V+L +     
Sbjct: 3   SGSSGRSKT--VILAKNL------PAGTL-----AAEIQETFSRFGSLGRVLLPEGG--I 47

Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 744
            A + F EP  A      L    F    +  E W     +      ++ +          
Sbjct: 48  TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE-WAPIGVFGAAPQKKDSQ---------- 96

Query: 745 EEEDKKKKEAG 755
            E+  +K E+G
Sbjct: 97  HEQPAEKAESG 107

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 340 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEG 399
                RSK   VI+ KNL                  +++E  S+ G + +V+L +     
Sbjct: 3   SGSSGRSKT--VILAKNL------PAGTL-----AAEIQETFSRFGSLGRVLLPEGG--I 47

Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK 454
            A + F EP  A      L    F    +  E W     +      ++ +     
Sbjct: 48  TAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE-WAPIGVFGAAPQKKDSQHEQPA 101

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 14/110 (12%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
            T +   NLP      E  E   + G            +     P        A+  +++
Sbjct: 10  KTVILAKNLPAGTLAAEIQETFSRFG-----------SLGRVLLPEGGIT---AIVEFLE 55

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE 324
                 A   L   +     + +E A   + G A   K    ++  +  E
Sbjct: 56  PLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAE 105

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 203 PEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK 262
           P              +++ NL  + +  E    + +                   D  T 
Sbjct: 8   PVEGSE---STTPFNLFIGNLNPNKSVAELKVAISELFAK---------NDLAVVDVRTG 55

Query: 263 DFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
             +      +   E ++ AL  L G ++ G +IK+E+ K
Sbjct: 56  TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 490 DLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 549
           D  +  ++     +++ NL  + +  E    + +                   D  T   
Sbjct: 7   DPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAK---------NDLAVVDVRTGTN 57

Query: 550 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +      +   E ++ AL  L G ++ G +IK+E+ K
Sbjct: 58  RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 16/90 (17%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           +    K+++ NLP + T++E   + ++ G V  + D     I           K      
Sbjct: 5   SSGMVKLFIGNLPREATEQEIRSLFEQYGKV-LECD-----II----------KNYGFVH 48

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
              K + + A+  L  Y++ G  I VE +K
Sbjct: 49  IEDKTAAEDAIRNLHHYKLHGVNINVEASK 78

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
              K+++ NLP + T++E   + ++ G V  + D     I           K        
Sbjct: 7   GMVKLFIGNLPREATEQEIRSLFEQYGKV-LECD-----II----------KNYGFVHIE 50

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
            K + + A+  L  Y++ G  I VE +K
Sbjct: 51  DKTAAEDAIRNLHHYKLHGVNINVEASK 78

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 189 PKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 248
              +   V             D      KVYV NL  +  + E        G +      
Sbjct: 47  DATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRS---- 102

Query: 249 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
               + +  +P      G A   +        A+  LDG  + G +++VE + 
Sbjct: 103 ----VWVARNP-----PGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 21/152 (13%)

Query: 435 GKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKL 494
             T      TAE+   +        G+    +  K     E          +    L   
Sbjct: 16  TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPL--- 72

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
                + KVYV NL  +  + E        G +          + +  +P      G A 
Sbjct: 73  -----DCKVYVGNLGNNGNKTELERAFGYYGPLRS--------VWVARNP-----PGFAF 114

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +        A+  LDG  + G +++VE + 
Sbjct: 115 VEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 14/157 (8%)

Query: 284 ILDGYEIRGKKIKVERAKFTMKG--EAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKM 341
           IL+G  ++G+         T +   + Y        +   D         +        M
Sbjct: 6   ILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHM 65

Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 401
             +    +  + V NL        +       + +L       G ++ V +  ++P G A
Sbjct: 66  HRDSCPLDCKVYVGNL------GNNGN-----KTELERAFGYYGPLRSVWVA-RNPPGFA 113

Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR 438
            + F++P  A      L+GR     ++  E  +G+ R
Sbjct: 114 FVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 150

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 14/157 (8%)

Query: 569 ILDGYEIRGKKIKVERAKFTMKG--EAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKM 626
           IL+G  ++G+         T +   + Y        +   D         +        M
Sbjct: 6   ILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHM 65

Query: 627 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 686
             +    +  + V NL        +       + +L       G ++ V +  ++P G A
Sbjct: 66  HRDSCPLDCKVYVGNL------GNNGN-----KTELERAFGYYGPLRSVWVA-RNPPGFA 113

Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR 723
            + F++P  A      L+GR     ++  E  +G+ R
Sbjct: 114 FVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 150

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 16/92 (17%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
              S  V+V  L   + + + VE ++K G +          + +         K  AL  
Sbjct: 12  VSVSPVVHVRGLCESVVEADLVEALEKFGTI--------CYVMMMPF------KRQALVE 57

Query: 272 YIKKESVDLALSIL--DGYEIRGKKIKVERAK 301
           +   +S    ++        I G++     + 
Sbjct: 58  FENIDSAKECVTFAADVPVYIAGQQAFFNYST 89

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 16/86 (18%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           V+V  L   + + + VE ++K G +          + +         K  AL  +   +S
Sbjct: 18  VHVRGLCESVVEADLVEALEKFGTI--------CYVMMMPF------KRQALVEFENIDS 63

Query: 563 VDLALSIL--DGYEIRGKKIKVERAK 586
               ++        I G++     + 
Sbjct: 64  AKECVTFAADVPVYIAGQQAFFNYST 89

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTKDFKG 266
            +   K+++  L  +  ++    V  K G     L++KD               T   +G
Sbjct: 4   ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD--------------RTSKSRG 49

Query: 267 DALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            A  T+        A   ++G  + GK IKVE+AK
Sbjct: 50  FAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCG-----LVMKDVDTNQMKIKLYTDPYTKDFK 550
           +A    K+++  L  +  ++    V  K G     L++KD               T   +
Sbjct: 3   EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD--------------RTSKSR 48

Query: 551 GDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
           G A  T+        A   ++G  + GK IKVE+AK
Sbjct: 49  GFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 493 KLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKG 551
           ++ K Q  +K+ V N+P    Q E  E+    G + K V       +L      T   +G
Sbjct: 8   QVPKKQTTSKILVRNIPFQANQREIRELFSTFGEL-KTV-------RLPKKMTGTGAHRG 59

Query: 552 DALCTYIKKESVDLALSIL-DGYEIRGKKIKVERAK 586
                +I K+    A + L     + G+++ +E A 
Sbjct: 60  FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKGDALCT 271
           + ++K+ V N+P    Q E  E+    G + K V       +L      T   +G     
Sbjct: 13  QTTSKILVRNIPFQANQREIRELFSTFGEL-KTV-------RLPKKMTGTGAHRGFGFVD 64

Query: 272 YIKKESVDLALSIL-DGYEIRGKKIKVERAK 301
           +I K+    A + L     + G+++ +E A 
Sbjct: 65  FITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 458 FLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEK-LKKAQENTKVYVSNLPLDLTQEE 516
            LG       ++   + E    ++  ++     + +  +  + N ++YV NL   + +++
Sbjct: 2   PLGSDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKD 61

Query: 517 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576
              +  +      +       I+L         KG A      +++   AL   +GY + 
Sbjct: 62  LKYIFGRYVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118

Query: 577 GKKIKVERAK 586
           GK + V+ A+
Sbjct: 119 GKPMVVQFAR 128

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} Length = 143

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 193 EKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK 252
            ++   +       + ++ GE + ++YV NL   + +++   +  +      +       
Sbjct: 23  GRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD 82

Query: 253 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           I+L         KG A      +++   AL   +GY + GK + V+ A+
Sbjct: 83  IRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
           P  +  P   +         +V VS LP   + ++  + M++ G V             Y
Sbjct: 4   PRGRYGPPSRR------SENRVVVSGLPPSGSWQDLKDHMREAGDV------------CY 45

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 302
            D Y     G  +  +++KE +  A+  LD  + R  + +    + 
Sbjct: 46  ADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           +V VS LP   + ++  + M++ G V             Y D Y     G  +  +++KE
Sbjct: 18  RVVVSGLPPSGSWQDLKDHMREAGDV------------CYADVYRD---GTGVVEFVRKE 62

Query: 562 SVDLALSILDGYEIRGKKIKVERAKF 587
            +  A+  LD  + R  + +    + 
Sbjct: 63  DMTYAVRKLDNTKFRSHEGETAYIRV 88

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 500 NTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
            +++++ NLPL ++++E+   +    G +M      Q+ IK                 + 
Sbjct: 22  KSRLFIGNLPLKNVSKEDLFRIFSPYGHIM------QINIK----------NAFGFIQFD 65

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
             +SV  A+         GKK+ +E + 
Sbjct: 66  NPQSVRDAIEXESQEMNFGKKLILEVSS 93

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 215 STKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
            +++++ NLPL ++++E+   +    G +M      Q+ IK                 + 
Sbjct: 22  KSRLFIGNLPLKNVSKEDLFRIFSPYGHIM------QINIK----------NAFGFIQFD 65

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
             +SV  A+         GKK+ +E + 
Sbjct: 66  NPQSVRDAIEXESQEMNFGKKLILEVSS 93

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 12/117 (10%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
               R     ++         V++  LP   T+ +          V         ++ + 
Sbjct: 28  QQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV---------RVHIE 78

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT-MKGEAYDPK 312
             P  +   G+A   +   E    A+S  D   ++ + I++     T     AY  +
Sbjct: 79  IGPDGR-VTGEADVEFATHEEAVAAMS-KDRANMQHRYIELFLNSTTGASNGAYSSQ 133

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Length = 139

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 12/117 (10%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
           +   +   D E   ++     V++  LP   T+ +          V         ++ + 
Sbjct: 28  QQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV---------RVHIE 78

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT-MKGEAYDPK 597
             P  +   G+A   +   E    A+S  D   ++ + I++     T     AY  +
Sbjct: 79  IGPDGR-VTGEADVEFATHEEAVAAMS-KDRANMQHRYIELFLNSTTGASNGAYSSQ 133

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 14/90 (15%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           +     V+VS  P  +   +  E     G V            +  D     F   A+  
Sbjct: 5   SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPV----------ASVVMDKDKGVF---AIVE 51

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
                + +  LS    + + G +++V   +
Sbjct: 52  MGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 14/85 (16%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
            V+VS  P  +   +  E     G V            +  D     F   A+       
Sbjct: 10  SVFVSGFPRGVDSAQLSEYFLAFGPV----------ASVVMDKDKGVF---AIVEMGDVG 56

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
           + +  LS    + + G +++V   +
Sbjct: 57  AREAVLS-QSQHSLGGHRLRVRPRE 80

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 17/88 (19%)

Query: 500 NTKVYVSNLPLDL-TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           N++V++ NL   L  + +   +  K G V          +           KG A   Y 
Sbjct: 27  NSRVFIGNLNTALVKKSDVETIFSKYGRVA------GCSVH----------KGYAFVQYS 70

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            +     A+   +G  + G+ + +  A 
Sbjct: 71  NERHARAAVLGENGRVLAGQTLDINMAG 98

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 17/88 (19%)

Query: 215 STKVYVSNLPLDL-TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           +++V++ NL   L  + +   +  K G V          +           KG A   Y 
Sbjct: 27  NSRVFIGNLNTALVKKSDVETIFSKYGRVA------GCSVH----------KGYAFVQYS 70

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
            +     A+   +G  + G+ + +  A 
Sbjct: 71  NERHARAAVLGENGRVLAGQTLDINMAG 98

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G  S  +++  LP+D+T+ E + +    G V          + +         K  A   
Sbjct: 13  GVPSRVIHIRKLPIDVTEGEVISLGLPFGKV--------TNLLMLKG------KNQAFIE 58

Query: 272 YIKKESVDLALS--ILDGYEIRGKKIKVERAK 301
              +E+ +  ++        +RG+ I ++ + 
Sbjct: 59  MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 495 KKAQENTKV-YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDA 553
             +   ++V ++  LP+D+T+ E + +    G V          + +         K  A
Sbjct: 10  HGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKV--------TNLLMLKG------KNQA 55

Query: 554 LCTYIKKESVDLALS--ILDGYEIRGKKIKVERAK 586
                 +E+ +  ++        +RG+ I ++ + 
Sbjct: 56  FIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 16/102 (15%)

Query: 484 KKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 543
                ++ +   K   +  V++  L   + + + VE +Q+ G +          + +   
Sbjct: 5   HHHHMENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--------SYVVVMPK 56

Query: 544 PYTKDFKGDALCTYIKKESVDLALSIL--DGYEIRGKKIKVE 583
                 K  AL  +        A++    +   I G    V 
Sbjct: 57  ------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Length = 100

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 18/105 (17%)

Query: 198 GQKRKPEPPKWFD--IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL 255
           G         + D      S  V++  L   + + + VE +Q+ G +          + +
Sbjct: 2   GHHHHHHMENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--------SYVVV 53

Query: 256 YTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEIRGKKIKVE 298
                    K  AL  +        A++    +   I G    V 
Sbjct: 54  MPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E    V +  LP   T EE V    +   +    +     I   T P  +   GDA   +
Sbjct: 21  ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE----GILFVTYPDGR-PTGDAFVLF 75

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             +E    AL       +  + I++ R+ 
Sbjct: 76  ACEEYAQNALR-KHKDLLGKRYIELFRST 103

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 489 KDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD 548
            ++ +    +    V +  LP   T EE V    +   +    +     I   T P  + 
Sbjct: 12  NEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE----GILFVTYPDGR- 66

Query: 549 FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             GDA   +  +E    AL       +  + I++ R+ 
Sbjct: 67  PTGDAFVLFACEEYAQNALR-KHKDLLGKRYIELFRST 103

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 15/89 (16%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
             T +YV  L   +T+ +      + G +          I +         +  A   + 
Sbjct: 11  TITTLYVGGLGDTITETDLRNHFYQFGEI--------RTITVVQR------QQCAFIQFA 56

Query: 559 KKESVDLAL-SILDGYEIRGKKIKVERAK 586
            +++ ++A     +   + G+++ V+  +
Sbjct: 57  TRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T +YV  L   +T+ +      + G +          I +         +  A   +  +
Sbjct: 13  TTLYVGGLGDTITETDLRNHFYQFGEI--------RTITVVQR------QQCAFIQFATR 58

Query: 276 ESVDLAL-SILDGYEIRGKKIKVERAK 301
           ++ ++A     +   + G+++ V+  +
Sbjct: 59  QAAEVAAEKSFNKLIVNGRRLNVKWGR 85

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                V+V +L  ++T E+        G +           ++  D  T   KG    ++
Sbjct: 13  SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             K   + A+  + G  + G++I+   A 
Sbjct: 65  FNKWDAENAIQQMGGQWLGGRQIRTNWAT 93

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K    +  V+V +L  ++T E+        G +           ++  D  T   KG   
Sbjct: 10  KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGF 61

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            ++  K   + A+  + G  + G++I+   A 
Sbjct: 62  VSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
            G    PE       G E   V +  LP   + E+    +  C +           +   
Sbjct: 6   SGMMLGPE-------GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG-----VHFI 53

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT 303
                +   G+A      ++ V LAL   D   +  + I+V ++  T
Sbjct: 54  YTREGR-QSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
            +  E   V +  LP   + E+    +  C +           +        +   G+A 
Sbjct: 12  PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG-----VHFIYTREGR-QSGEAF 65

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFT 588
                ++ V LAL   D   +  + I+V ++  T
Sbjct: 66  VELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 10/87 (11%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           +  ++V +L +++  E      +     +           +  D  T   +G    ++  
Sbjct: 1   TFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTS 52

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
           ++    A+  + G ++ G+ +++  A 
Sbjct: 53  QDDAQNAMDSMQGQDLNGRPLRINWAA 79

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
             ++V +L +++  E      +     +           +  D  T   +G    ++  +
Sbjct: 2   FNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQ 53

Query: 561 ESVDLALSILDGYEIRGKKIKVERAK 586
           +    A+  + G ++ G+ +++  A 
Sbjct: 54  DDAQNAMDSMQGQDLNGRPLRINWAA 79

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 24/106 (22%)

Query: 198 GQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
              +    P        S  +++  LP ++T+ E + +    G V          I +  
Sbjct: 6   SGDKMDGAP--------SRVLHIRKLPGEVTETEVIALGLPFGKV--------TNILMLK 49

Query: 258 DPYTKDFKGDALCTYIKKESVDLALS--ILDGYEIRGKKIKVERAK 301
                  K  A      +E+    ++        +R + I ++ + 
Sbjct: 50  G------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 101

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 16/86 (18%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +++  LP ++T+ E + +    G V          I +         K  A      +E+
Sbjct: 18  LHIRKLPGEVTETEVIALGLPFGKV--------TNILMLKG------KNQAFLELATEEA 63

Query: 563 VDLALS--ILDGYEIRGKKIKVERAK 586
               ++        +R + I ++ + 
Sbjct: 64  AITMVNYYSAVTPHLRNQPIYIQYSN 89

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G +S K++V  +P +  + E  E  +K G+V    +   +      D   +  +G    T
Sbjct: 7   GSKSNKIFVGGIPHNCGETELREYFKKFGVV---TEVVMI-----YDAEKQRPRGFGFIT 58

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +  ++SVD A++ +  ++I GKK++V+RA+
Sbjct: 59  FEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
               ++ K++V  +P +  + E  E  +K G+V    +   +      D   +  +G   
Sbjct: 5   SSGSKSNKIFVGGIPHNCGETELREYFKKFGVV---TEVVMI-----YDAEKQRPRGFGF 56

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            T+  ++SVD A++ +  ++I GKK++V+RA+
Sbjct: 57  ITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 492 EKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 551
             LK   +N  VY+   P D T ++  E ++  G V        + I++      K FKG
Sbjct: 3   WILKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV--------LNIQMRRTL-HKAFKG 53

Query: 552 DALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRK 605
                +   ES    +    G + +   + +       K + +  K + +K+ K
Sbjct: 54  SIFVVFDSIESAKKFVE-TPGQKYKETDLLIL-----FKDDYFAKKNEERKQNK 101

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           +  ++   +    LP   T E+ +     C +   +       I    +   K  +GDAL
Sbjct: 6   EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG-----IHFLLNRDGK-RRGDAL 59

Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                ++ V  AL       +  + ++V    
Sbjct: 60  IEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Length = 107

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           ++  +   +    LP   T E+ +     C +   +       I    +   K  +GDAL
Sbjct: 6   EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG-----IHFLLNRDGK-RRGDAL 59

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                ++ V  AL       +  + ++V    
Sbjct: 60  IEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPEGVAQIFFKEPEA 410
           I + NL      ++ +    E ++ L    S+ G +  + V       G A + FKE  +
Sbjct: 12  IYINNL------NEKIK-KDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64

Query: 411 ADACRELLNGRWFGQRQI 428
           A      + G  F  + +
Sbjct: 65  ATNALRSMQGFPFYDKPM 82

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV-VLHDKHPEGVAQIFFKEPEA 695
           I + NL      ++ +    E ++ L    S+ G +  + V       G A + FKE  +
Sbjct: 12  IYINNL------NEKIK-KDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64

Query: 696 ADACRELLNGRWFGQRQI 713
           A      + G  F  + +
Sbjct: 65  ATNALRSMQGFPFYDKPM 82

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK-DVDTNQMKIKLYTDPYTKDFKGDAL 554
           KA   T+++V  L  + +         + G +   D                      A 
Sbjct: 13  KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------------DSFAY 57

Query: 555 CTYIKKESVDLALSILDGYEIRG--KKIKVERAK 586
             Y   ++   A + + G+ + G  ++++V+ AK
Sbjct: 58  IQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMK-DVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           +T+++V  L  + +         + G +   D                      A   Y 
Sbjct: 17  TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------------DSFAYIQYE 61

Query: 274 KKESVDLALSILDGYEIRG--KKIKVERAK 301
             ++   A + + G+ + G  ++++V+ AK
Sbjct: 62  SLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +  ++   +YV     D+T           G ++         + +         +  A 
Sbjct: 10  RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMDPP------RNCAF 53

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            TY K ES D A++ L+G ++   ++KV  A+
Sbjct: 54  VTYEKMESADQAVAELNGTQVESVQLKVNIAR 85

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 202 KPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT 261
               P+   +G    K+++  L    TQE   E   + G V    +   M+     DP T
Sbjct: 12  SGLVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEV---KECLVMR-----DPLT 63

Query: 262 KDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           K  +G    T++ +  VD  L+    +E+  K I  + A 
Sbjct: 64  KRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAF 102

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 15/89 (16%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
              +KV+V     D+T EE  +   + G V   VD              K F+  A  T+
Sbjct: 9   HHGSKVFVGRCTEDMTAEELQQFFCQYGEV---VDVFIP----------KPFRAFAFVTF 55

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              +         +   I+G  + +  A+
Sbjct: 56  ADDKVAQSLCG--EDLIIKGISVHISNAE 82

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
                 +KV+V     D+T EE  +   + G V   VD              K F+  A 
Sbjct: 6   HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEV---VDVFIP----------KPFRAFAF 52

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            T+   +         +   I+G  + +  A+
Sbjct: 53  VTFADDKVAQSLCG--EDLIIKGISVHISNAE 82

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
              V+V  + + + + E      + G V         ++K+ TD  T   KG    ++  
Sbjct: 9   PNTVFVGGIDVRMDETEIRSFFARYGSV--------KEVKIITDR-TGVSKGYGFVSFYN 59

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 316
              V     +       GKK+K+  A        Y  + +P 
Sbjct: 60  DVDVQKI--VESQINFHGKKLKLGPAIRKQNLSTYHVQPRPL 99

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
             V+V  + + + + E      + G V         ++K+ TD  T   KG    ++   
Sbjct: 10  NTVFVGGIDVRMDETEIRSFFARYGSV--------KEVKIITDR-TGVSKGYGFVSFYND 60

Query: 561 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPK 601
             V     +       GKK+K+  A        Y  + +P 
Sbjct: 61  VDVQKI--VESQINFHGKKLKLGPAIRKQNLSTYHVQPRPL 99

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 21/108 (19%)

Query: 486 KRKKDLEKLKKAQE--NTKVYVSNLPLDLTQEEFVEVMQKCGL-----VMKDVDTNQMKI 538
           K      ++ K QE   T +Y+SNLPL + ++E   +++  G      +++D  +     
Sbjct: 9   KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTS-- 65

Query: 539 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                      +G         E  +  +   +G  I+         +
Sbjct: 66  -----------RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 499 ENTKVYVSNLPLDLTQEEFVE-VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
             +++++ NLPL    +E +  +    G +   ++     IK                 +
Sbjct: 9   PKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQIN-----IK----------NAFGFIQF 52

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
              +SV  A+         GKK+ +E + 
Sbjct: 53  DNPQSVRDAIECESQEMNFGKKLILEVSS 81

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           S+ +++ NL  ++ ++   +     G++++         K+  DP T + KG A   +  
Sbjct: 5   SSGIFIGNLDPEIDEKLLYDTFSAFGVILQT-------PKIMRDPDTGNSKGYAFINFAS 57

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            ++ D A+  ++G  +  + I V  A 
Sbjct: 58  FDASDAAIEAMNGQYLCNRPITVSYAF 84

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGL-----VMKDVDTNQMKIKLYTDPYTKDF 549
            +   + K++V  L    ++E+ + + Q  G+     V++  D +               
Sbjct: 10  SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS-------------- 55

Query: 550 KGDALCTYIKKESVDLALSILDGYEI---RGKKIKVERAK 586
           KG A   +        A+  L G +        + V+ A 
Sbjct: 56  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 15/89 (16%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
             S+ V+V     D+T++E  E   + G V   +D              K F+  A  T+
Sbjct: 3   SGSSGVFVGRCTGDMTEDELREFFSQYGDV---MDVFIP----------KPFRAFAFVTF 49

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              +         +   I+G  + +  A+
Sbjct: 50  ADDQIAQSLCG--EDLIIKGISVHISNAE 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	773
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	100.0
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	100.0
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	100.0
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	100.0
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.95
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.95
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.95
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.94
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.94
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.94
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.94
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.94
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.94
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.94
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.93
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.93
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.93
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.93
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.92
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.92
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.92
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.91
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.91
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.91
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.91
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.91
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.91
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.91
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.91
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.89
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.89
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.89
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.89
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.88
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.88
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.87
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.76
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.76
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.74
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.73
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.73
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.7
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.7
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.7
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.7
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.69
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.69
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.68
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.67
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.67
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.67
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.66
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.66
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.66
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.66
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.65
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.65
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.65
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.64
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.64
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.64
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.64
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.64
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.63
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.63
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.63
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.63
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.63
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.63
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.63
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.63
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.63
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.62
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.62
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.62
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.62
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.62
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.62
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.62
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.62
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.62
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.62
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.62
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.62
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.61
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.61
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.61
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.61
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.61
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.61
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.61
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.61
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.61
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.61
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.61
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.61
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.61
2div_A	99	TRNA selenocysteine associated protein; structural	99.61
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.6
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.6
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.6
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.6
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.6
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.6
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.6
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.6
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.6
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.59
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.59
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.59
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.59
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.59
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.59
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.59
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.59
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.59
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.59
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.59
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.59
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.59
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.59
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.59
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.59
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.58
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.58
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.58
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.58
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.58
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.58
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.58
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.58
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.58
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.58
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.58
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.58
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.58
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.58
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.57
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.57
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.57
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.57
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.57
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.57
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.57
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.57
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.57
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.57
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.57
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.57
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.57
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.57
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.56
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.56
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.56
2div_A	99	TRNA selenocysteine associated protein; structural	99.56
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.56
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.56
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.56
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.56
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.56
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.56
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.56
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.56
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.56
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.56
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.56
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.56
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.56
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.56
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.55
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.55
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.55
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.55
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.55
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.55
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.55
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.55
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.55
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.55
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.55
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.55
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.55
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.55
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.55
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.55
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.54
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.54
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.54
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.54
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.54
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.54
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.54
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.54
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.54
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.54
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.54
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.54
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.54
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.54
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.54
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.54
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.53
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.53
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.53
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.53
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.53
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.53
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.53
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.29
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.53
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.53
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.53
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.53
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.53
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.53
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.52
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.52
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.52
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.52
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.52
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.52
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.52
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.52
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.52
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.52
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.52
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.52
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.52
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.52
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.51
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.51
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.51
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.51
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.51
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.51
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.51
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.51
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.51
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.51
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.51
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.51
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.5
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.5
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.5
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.5
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.5
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.5
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.5
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.5
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.5
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.5
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.49
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.49
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.49
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.49
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.49
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.49
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.49
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.48
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.48
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.48
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.48
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.48
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.48
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.48
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.48
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.48
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.48
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.48
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.47
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.47
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.47
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.21
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.47
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.47
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.47
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.47
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.47
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.47
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.47
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.47
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.47
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.47
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.46
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.46
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.46
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.46
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.46
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.46
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.46
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.45
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.45
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.45
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.45
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.45
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.45
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.45
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.45
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.45
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.44
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.44
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.44
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.44
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.44
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.44
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.44
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.44
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.44
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.43
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.43
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.43
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.43
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.43
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.43
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.43
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.42
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.42
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.42
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.42
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.41
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.41
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.41
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.41
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.41
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.41
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.41
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.41
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.4
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.4
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.4
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.4
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.4
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.39
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.39
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.39
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.39
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.38
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.38
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.38
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.38
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.38
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.37
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.37
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.37
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.36
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.36
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.36
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.36
1x5p_A	97	Negative elongation factor E; structure genomics,	99.35
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.35
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.34
1x5p_A	97	Negative elongation factor E; structure genomics,	99.34
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.34
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.34
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.34
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.33
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.32
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.32
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.3
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.3
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.29
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.29
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.27
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.27
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.24
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.19
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.19
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.19
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.15
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.93
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.91
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.87
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	98.86
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.74
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.71
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.63
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.6
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.54
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	98.53
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.37
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.29
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.21
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.73
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	97.23
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.79
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.58
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.57
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	96.38
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	96.38
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	96.18
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	96.09
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	96.04
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	95.97
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	95.9
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	95.84
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	94.8
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	94.59
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	93.34
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	93.24
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	92.91

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=100.00  E-value=1e-36  Score=324.06  Aligned_cols=238  Identities=18%  Similarity=0.265  Sum_probs=208.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.|| |..        |++      |+++|||||.|.+.++|..|+..|||..|.|+
T Consensus        21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~--------~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~   85 (284)
T 3smz_A           21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKY--------CFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRER   85 (284)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHTTTSC-EEE--------EEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEE--------EEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCe
Confidence            669999999999999999999999999 776        776      56789999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|.++.                                              ..++|+|+||+  ..+.+        
T Consensus        86 ~i~v~~~~----------------------------------------------~~~~l~v~nlp--~~~t~--------  109 (284)
T 3smz_A           86 ELSVQLQP----------------------------------------------TDALLCVANLP--PSLTQ--------  109 (284)
T ss_dssp             ECEEEECC----------------------------------------------CSCEEEEESCC--TTCCH--------
T ss_pred             EEEEEecC----------------------------------------------CCCEEEEcCCC--CcCCH--------
Confidence            99997632                                              24689999993  33332        


Q ss_pred             HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                       ++|+++|+.||.|..|.+..    +.+.|+|||.|.+.++|.+|+..|||..++|+.|.+.+......           
T Consensus       110 -~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~-----------  177 (284)
T 3smz_A          110 -QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL-----------  177 (284)
T ss_dssp             -HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC-----------
T ss_pred             -HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC-----------
Confidence             88999999999999997652    34689999999999999999999999999999999987643210           


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCC-CHHHHHHHHHhcCcce
Q psy2160         450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDL-TQEEFVEVMQKCGLVM  528 (773)
Q Consensus       450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~-t~e~L~~~F~~~G~I~  528 (773)
                                                                  .......++|||+|||.++ |+++|+++|+.||.|.
T Consensus       178 --------------------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~  213 (284)
T 3smz_A          178 --------------------------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT  213 (284)
T ss_dssp             --------------------------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS
T ss_pred             --------------------------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE
Confidence                                                        0112356899999999995 9999999999999998


Q ss_pred             eccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         529 KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       529 ~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                              .|+|+.++ +|.++|+|||+|.+.++|.+|+..|||..|.|++|+|.+|..
T Consensus       214 --------~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~  263 (284)
T 3smz_A          214 --------FCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP  263 (284)
T ss_dssp             --------EEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             --------EEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence                    79999998 489999999999999999999999999999999999999983

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=100.00  E-value=8.2e-37  Score=326.06  Aligned_cols=245  Identities=19%  Similarity=0.218  Sum_probs=209.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|+++.. | ++|||||+|.+.++|..||+ +|+..|.|+
T Consensus        40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~  108 (292)
T 2ghp_A           40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIH--------VDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQN  108 (292)
T ss_dssp             --CEEEEEEECTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCc
Confidence            7899999999999999999999999999998        99999886 4 58999999999999999996 899999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|.++.                                               .++|+|+||+  ..+.+        
T Consensus       109 ~i~v~~~~-----------------------------------------------~~~l~v~nlp--~~~t~--------  131 (292)
T 2ghp_A          109 EIIVSHLT-----------------------------------------------ECTLWMTNFP--PSYTQ--------  131 (292)
T ss_dssp             ECEEEECC-----------------------------------------------SCEEEEECCC--TTCCH--------
T ss_pred             EEEEEECC-----------------------------------------------CCEEEEECCC--CCCCH--------
Confidence            99997642                                               5689999993  33332        


Q ss_pred             HHHHHHHhhccC-CEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160         374 QQDLREECSKCG-HVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE  449 (773)
Q Consensus       374 ~edL~e~f~k~G-~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~  449 (773)
                       ++|+++|+.|| .|..|.+..   +.+.|+|||.|.+.++|.+|+..|||..+.|+.|.|.+..+.....         
T Consensus       132 -~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~---------  201 (292)
T 2ghp_A          132 -RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK---------  201 (292)
T ss_dssp             -HHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------
T ss_pred             -HHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc---------
Confidence             88999999999 999998864   3478999999999999999999999999999999998865432100         


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCcce
Q psy2160         450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVM  528 (773)
Q Consensus       450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~  528 (773)
                       +.                                         .......++|||+|||.+ +|+++|+++|+.||.|.
T Consensus       202 -~~-----------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~  239 (292)
T 2ghp_A          202 -RT-----------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE  239 (292)
T ss_dssp             -----------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred             -cc-----------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence             00                                         011345789999999999 99999999999999999


Q ss_pred             eccCCCceEEEEEecCC-CCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         529 KDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       529 ~~~~~~~~~i~l~~d~~-tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                              .|+|+.+.. ||.++|||||+|.+.++|.+|+ .|||..|.|++|.|.+|..
T Consensus       240 --------~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          240 --------KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK  290 (292)
T ss_dssp             --------EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred             --------EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence                    799999886 6899999999999999999999 9999999999999999983

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=100.00  E-value=3.1e-35  Score=312.55  Aligned_cols=243  Identities=19%  Similarity=0.221  Sum_probs=211.2

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCee
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ  427 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~  427 (773)
                      .+++|+|+||+  ..+.+         ++|+++|+.|| |..|.+  +.++|+|||.|.+.++|.+|+..|||..+.|+.
T Consensus        21 ~~~~l~V~nLp--~~~te---------~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~   86 (284)
T 3smz_A           21 NRRKILIRGLP--GDVTN---------QEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERE   86 (284)
T ss_dssp             CCCEEEEECCC--TTCCH---------HHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEeCCC--CCCCH---------HHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeE
Confidence            46899999994  44443         88999999999 988887  456899999999999999999999999999999


Q ss_pred             EEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcC
Q psy2160         428 ITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSN  507 (773)
Q Consensus       428 I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~n  507 (773)
                      |.+.+.                                                                ...++|||+|
T Consensus        87 i~v~~~----------------------------------------------------------------~~~~~l~v~n  102 (284)
T 3smz_A           87 LSVQLQ----------------------------------------------------------------PTDALLCVAN  102 (284)
T ss_dssp             CEEEEC----------------------------------------------------------------CCSCEEEEES
T ss_pred             EEEEec----------------------------------------------------------------CCCCEEEEcC
Confidence            999752                                                                1357999999


Q ss_pred             CCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         508 LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       508 Lp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                      ||.++|+++|+++|+.||.|.        .|+++.+..+|.++|||||+|.+.++|..|+..|||..|.|++|.|.++..
T Consensus       103 lp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~  174 (284)
T 3smz_A          103 LPPSLTQQQFEELVRPFGSLE--------RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA  174 (284)
T ss_dssp             CCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred             CCCcCCHHHHHHHHHhcCCee--------EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence            999999999999999999999        799999998899999999999999999999999999999999999999873


Q ss_pred             cccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHh
Q psy2160         588 TMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS  667 (773)
Q Consensus       588 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~  667 (773)
                      ....                                     ......++|+|+||+..  +.+        +++|+++|+
T Consensus       175 ~~~~-------------------------------------~~~~~~~~l~v~nlp~~--~~~--------~~~l~~~f~  207 (284)
T 3smz_A          175 GQLT-------------------------------------PALLHSRCLCVDRLPPG--FND--------VDALCRALS  207 (284)
T ss_dssp             GGCC-------------------------------------TTTTSCSEEEEECCCTT--CCC--------HHHHHHHTC
T ss_pred             CCCC-------------------------------------cccCCccEEEEecCCcc--cCC--------HHHHHHHhh
Confidence            2110                                     01134589999999765  311        389999999


Q ss_pred             cCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCccc
Q psy2160         668 KCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR  723 (773)
Q Consensus       668 ~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~  723 (773)
                      +||.|..|.|..   +.+.|+|||.|.++++|.+|+..|||+.|+||+|.|.|+..+..
T Consensus       208 ~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~  266 (284)
T 3smz_A          208 AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP  266 (284)
T ss_dssp             SSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred             CCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence            999999998754   56689999999999999999999999999999999999876543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=100.00  E-value=3.3e-34  Score=305.91  Aligned_cols=246  Identities=21%  Similarity=0.321  Sum_probs=199.9

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC--CCCCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD--KHPEGVAQIFFKEPEAADACRELLNGRWF  423 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d--~~~~G~afV~F~~~e~A~~Ai~~lng~~~  423 (773)
                      ....++|+|+||+  ..+.+         ++|+++|+.||.|..|.+..  ..+.|+|||.|.+.++|.+|+. |||..+
T Consensus        38 ~~~~~~l~V~nLp--~~~t~---------~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~  105 (292)
T 2ghp_A           38 NRELTTVLVKNLP--KSYNQ---------NKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV  105 (292)
T ss_dssp             ----CEEEEEEEC--TTCCH---------HHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred             CCCCCEEEEeCCC--CCCCH---------HHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe
Confidence            4568899999993  34433         88999999999999998764  2357999999999999999996 899999


Q ss_pred             CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160         424 GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV  503 (773)
Q Consensus       424 ~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l  503 (773)
                      +|+.|.+.+.                                                                 ..++|
T Consensus       106 ~g~~i~v~~~-----------------------------------------------------------------~~~~l  120 (292)
T 2ghp_A          106 GQNEIIVSHL-----------------------------------------------------------------TECTL  120 (292)
T ss_dssp             TTEECEEEEC-----------------------------------------------------------------CSCEE
T ss_pred             CCcEEEEEEC-----------------------------------------------------------------CCCEE
Confidence            9999999752                                                                 35799


Q ss_pred             EEcCCCCCCCHHHHHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160         504 YVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  582 (773)
Q Consensus       504 ~V~nLp~~~t~e~L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V  582 (773)
                      ||+|||.++|+++|+++|+.|| .|.        .|+|+.+.. |.++|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus       121 ~v~nlp~~~t~~~l~~~f~~~G~~i~--------~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v  191 (292)
T 2ghp_A          121 WMTNFPPSYTQRNIRDLLQDINVVAL--------SIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT  191 (292)
T ss_dssp             EEECCCTTCCHHHHHHHHHHTTCCCC--------EEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             EEECCCCCCCHHHHHHHHHHhCCCeE--------EEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence            9999999999999999999999 998        799999886 889999999999999999999999999999999999


Q ss_pred             EEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHH
Q psy2160         583 ERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDL  662 (773)
Q Consensus       583 ~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl  662 (773)
                      .++.......           +.                      .......++|+|+||+... ++         +++|
T Consensus       192 ~~a~~~~~~~-----------~~----------------------~~~~~~~~~l~v~nlp~~~-~t---------~~~l  228 (292)
T 2ghp_A          192 KVSNPLEKSK-----------RT----------------------DSATLEGREIMIRNLSTEL-LD---------ENLL  228 (292)
T ss_dssp             EECCCC------------------------------------------CCTTTEEEEEEECTTT-CC---------HHHH
T ss_pred             EECCCCcccc-----------cc----------------------cccCCCCceEEEECCCccc-CC---------HHHH
Confidence            9987321110           00                      0112346899999997540 22         3899


Q ss_pred             HHHHhcCCceeEEEecC-----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         663 REECSKCGHVKKVVLHD-----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       663 ~~~f~~fG~V~~v~i~~-----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      +++|++||.|..|.|..     +.++|+|||.|.++++|.+|+ .|||+.|+||+|.|.|...+
T Consensus       229 ~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k  291 (292)
T 2ghp_A          229 RESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK  291 (292)
T ss_dssp             HHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred             HHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence            99999999999998875     556899999999999999999 99999999999999997765

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.95  E-value=1e-27  Score=243.98  Aligned_cols=166  Identities=21%  Similarity=0.320  Sum_probs=145.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+.++|||+|||.++|+++|+++|++||.|.        +|+|++|..+|+++|||||+|.+.++|.+||..||+..+.|
T Consensus        13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g   84 (213)
T 4f02_A           13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPIL--------SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG   84 (213)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEE--------EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence            4578999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      +.|+|.++.....            ..                          ....++|+|+||+..  +++       
T Consensus        85 ~~i~~~~~~~~~~------------~~--------------------------~~~~~~l~v~nl~~~--~t~-------  117 (213)
T 4f02_A           85 KPVRIMWSQRDPS------------LR--------------------------KSGVGNIFIKNLDKS--IDN-------  117 (213)
T ss_dssp             EECEEEECCCCTH------------HH--------------------------HHCTTEEEEESCCTT--CCH-------
T ss_pred             ccccccccccccc------------cc--------------------------ccccccceECCcccc--cHH-------
Confidence            9999998873210            00                          012368999999765  443       


Q ss_pred             HHHHHHHHHhcCCceeEEEecC--CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160         658 YQQDLREECSKCGHVKKVVLHD--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  720 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v~i~~--~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg  720 (773)
                        ++|+++|++||.|..|.|..  +.++|+|||.|.+.++|.+|+..|||..|+||+|.|.++..
T Consensus       118 --~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~  180 (213)
T 4f02_A          118 --KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS  180 (213)
T ss_dssp             --HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             --HHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence              89999999999999997753  44689999999999999999999999999999999999764

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.95  E-value=5.9e-27  Score=227.98  Aligned_cols=165  Identities=25%  Similarity=0.400  Sum_probs=150.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |++++++.+|.++|||||.|.+.++|..|++.|++..+.|+
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~   73 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK   73 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence            4689999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|.++...                                                          .           
T Consensus        74 ~l~v~~~~~~----------------------------------------------------------~-----------   84 (168)
T 1b7f_A           74 RLKVSYARPG----------------------------------------------------------G-----------   84 (168)
T ss_dssp             ECEEEECCCC----------------------------------------------------------S-----------
T ss_pred             EEEEEecCCC----------------------------------------------------------c-----------
Confidence            9999765310                                                          0           


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                       .                                                          .                   
T Consensus        85 -~----------------------------------------------------------~-------------------   86 (168)
T 1b7f_A           85 -E----------------------------------------------------------S-------------------   86 (168)
T ss_dssp             -S----------------------------------------------------------T-------------------
T ss_pred             -c----------------------------------------------------------c-------------------
Confidence             0                                                          0                   


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                                  ...++|||+|||.++|+++|+++|++||.|.     
T Consensus        87 --------------------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-----  117 (168)
T 1b7f_A           87 --------------------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIV-----  117 (168)
T ss_dssp             --------------------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEE-----
T ss_pred             --------------------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE-----
Confidence                                                        0246899999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC--eEEEEEEc
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKVERA  585 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g--~~i~V~~a  585 (773)
                         .|+++++..+|.++|+|||+|.+.++|.+|+..|||..|.|  ++|+|.+|
T Consensus       118 ---~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          118 ---QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             ---EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             ---EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence               79999998889999999999999999999999999999987  99999986

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.95  E-value=1.6e-26  Score=224.44  Aligned_cols=164  Identities=27%  Similarity=0.415  Sum_probs=148.5

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      +++|||+|||+++|+++|+++|+.||.|..        |++++++.+|.++|||||+|.+.++|..|++.||+..+.|++
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~   73 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT   73 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence            589999999999999999999999999998        999999977999999999999999999999999999999999


Q ss_pred             EEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHH
Q psy2160         295 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ  374 (773)
Q Consensus       295 I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~  374 (773)
                      |+|.++..                                                          ..            
T Consensus        74 l~v~~~~~----------------------------------------------------------~~------------   83 (167)
T 1fxl_A           74 IKVSYARP----------------------------------------------------------SS------------   83 (167)
T ss_dssp             CEEEECCC----------------------------------------------------------CC------------
T ss_pred             EEEEecCC----------------------------------------------------------Cc------------
Confidence            99966431                                                          00            


Q ss_pred             HHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHH
Q psy2160         375 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK  454 (773)
Q Consensus       375 edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~  454 (773)
                      .                                                                               
T Consensus        84 ~-------------------------------------------------------------------------------   84 (167)
T 1fxl_A           84 A-------------------------------------------------------------------------------   84 (167)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             HHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCC
Q psy2160         455 WETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN  534 (773)
Q Consensus       455 ~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~  534 (773)
                                                                ....++|||+|||.++|+++|+++|++||.|.      
T Consensus        85 ------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~------  116 (167)
T 1fxl_A           85 ------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRII------  116 (167)
T ss_dssp             ------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE------
T ss_pred             ------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe------
Confidence                                                      00135799999999999999999999999999      


Q ss_pred             ceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe--EEEEEEc
Q psy2160         535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK--KIKVERA  585 (773)
Q Consensus       535 ~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~--~i~V~~a  585 (773)
                        .|+++.+..+|.++|+|||+|.+.++|.+|++.|||..|.|+  +|+|.+|
T Consensus       117 --~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A  167 (167)
T 1fxl_A          117 --TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA  167 (167)
T ss_dssp             --EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             --EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence              799999988899999999999999999999999999999996  4888876

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2e-26  Score=223.50  Aligned_cols=161  Identities=19%  Similarity=0.237  Sum_probs=141.7

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||.++|+++|+++|++||.|.        +|+|+.++. |.++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i   71 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIA--------NIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV   71 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEE--------EEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeE--------EEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence            4899999999999999999999999999        799999986 7899999999999999999999999999999999


Q ss_pred             EEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHH
Q psy2160         581 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ  660 (773)
Q Consensus       581 ~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~e  660 (773)
                      .|.++.....                                      ....+.++|+|.||+..  +++         +
T Consensus        72 ~v~~~~~~~~--------------------------------------~~~~~~~~l~v~nl~~~--~t~---------~  102 (166)
T 3md3_A           72 KINWAFQSQQ--------------------------------------SSSDDTFNLFVGDLNVN--VDD---------E  102 (166)
T ss_dssp             EEEECCCCCC--------------------------------------CCCTTCEEEEEESCCTT--CCH---------H
T ss_pred             EEEEcCCCCC--------------------------------------CCCCCCceEEECCCCCC--CCH---------H
Confidence            9999873211                                      01224689999999765  443         8


Q ss_pred             HHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEec
Q psy2160         661 DLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  719 (773)
Q Consensus       661 dl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~d  719 (773)
                      +|+++|++||.|..+.+..    +.++|+|||.|.++++|.+|+..|||..|+||+|.|.|..
T Consensus       103 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A          103 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             HHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            9999999999999998753    5678999999999999999999999999999999999854

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.94  E-value=1.4e-26  Score=225.28  Aligned_cols=160  Identities=23%  Similarity=0.312  Sum_probs=143.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ++++|||+|||.++|+++|+++|+.||.|.        +|+++.++.+|.++|||||+|.+.++|..|+..|||..+.|+
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~   73 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPIN--------TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK   73 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence            468999999999999999999999999998        799999988899999999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      +|.|.++.....                                        ....++|+|.||+..  +++        
T Consensus        74 ~l~v~~~~~~~~----------------------------------------~~~~~~l~v~nl~~~--~t~--------  103 (168)
T 1b7f_A           74 RLKVSYARPGGE----------------------------------------SIKDTNLYVTNLPRT--ITD--------  103 (168)
T ss_dssp             ECEEEECCCCSS----------------------------------------TTTTCEEEEESCCTT--CCH--------
T ss_pred             EEEEEecCCCcc----------------------------------------cCCCCCEEEeCCCCC--CCH--------
Confidence            999999873210                                        123589999999765  443        


Q ss_pred             HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEE
Q psy2160         659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAET  717 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G--r~l~v~~  717 (773)
                       ++|+++|++||.|..|.+..    +.++|+|||.|.+.++|.+|+..|||+.|.|  ++|.|.|
T Consensus       104 -~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~  167 (168)
T 1b7f_A          104 -DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL  167 (168)
T ss_dssp             -HHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             -HHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence             89999999999999998764    4557999999999999999999999999987  9999987

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.94  E-value=2.9e-26  Score=222.57  Aligned_cols=159  Identities=26%  Similarity=0.336  Sum_probs=141.0

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        .|++++++.+|.++|||||+|.++++|..|+..|||..+.|++
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~   73 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE--------SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT   73 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence            58999999999999999999999999999        7999999988999999999999999999999999999999999


Q ss_pred             EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160         580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ  659 (773)
Q Consensus       580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~  659 (773)
                      |.|.++.....                                        ....++|+|.||+..  ++         +
T Consensus        74 l~v~~~~~~~~----------------------------------------~~~~~~l~v~nl~~~--~t---------~  102 (167)
T 1fxl_A           74 IKVSYARPSSA----------------------------------------SIRDANLYVSGLPKT--MT---------Q  102 (167)
T ss_dssp             CEEEECCCCCG----------------------------------------GGTTCEEEEESCCTT--CC---------H
T ss_pred             EEEEecCCCcc----------------------------------------cCCCCcEEECCCCCc--CC---------H
Confidence            99999873110                                        112478999999765  43         3


Q ss_pred             HHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeE--EEEEE
Q psy2160         660 QDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ--ITAET  717 (773)
Q Consensus       660 edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~--l~v~~  717 (773)
                      ++|+++|++||.|..|.+..    +.++|+|||+|.+.++|.+|+..|||+.|+||.  |.|.|
T Consensus       103 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~  166 (167)
T 1fxl_A          103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF  166 (167)
T ss_dssp             HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             HHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence            89999999999999998754    446799999999999999999999999999976  77776

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.94  E-value=2.4e-26  Score=233.82  Aligned_cols=165  Identities=21%  Similarity=0.326  Sum_probs=143.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        |+|++|+.||+++|||||+|.+.++|.+||+.+|+..+.|+
T Consensus        14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~   85 (213)
T 4f02_A           14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK   85 (213)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence            5689999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|+|..+.......                                      ......|+|+||  |..+.+        
T Consensus        86 ~i~~~~~~~~~~~~--------------------------------------~~~~~~l~v~nl--~~~~t~--------  117 (213)
T 4f02_A           86 PVRIMWSQRDPSLR--------------------------------------KSGVGNIFIKNL--DKSIDN--------  117 (213)
T ss_dssp             ECEEEECCCCTHHH--------------------------------------HHCTTEEEEESC--CTTCCH--------
T ss_pred             cccccccccccccc--------------------------------------ccccccceECCc--ccccHH--------
Confidence            99998765211000                                      112457999999  334433        


Q ss_pred             HHHHHHHhhccCCEEEEEee--CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCC
Q psy2160         374 QQDLREECSKCGHVKKVVLH--DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  435 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~--d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~  435 (773)
                       ++|+++|++||.|..|.+.  .+.++|+|||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus       118 -~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~  180 (213)
T 4f02_A          118 -KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS  180 (213)
T ss_dssp             -HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             -HHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence             8999999999999999775  244689999999999999999999999999999999998754

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.94  E-value=2.8e-26  Score=232.77  Aligned_cols=178  Identities=24%  Similarity=0.370  Sum_probs=151.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|+++..+|.++|||||.|.+.++|..||+.||+..|.|+
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~   98 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR   98 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence            6799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|.|.++...                                                        ...   .       
T Consensus        99 ~l~v~~~~~~--------------------------------------------------------~~~---~-------  112 (216)
T 2qfj_A           99 NIKVGRPSNI--------------------------------------------------------GQA---Q-------  112 (216)
T ss_dssp             CCEEECCSCC--------------------------------------------------------GGG---H-------
T ss_pred             eEEEecCCCc--------------------------------------------------------ccc---c-------
Confidence            9999654310                                                        000   0       


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                       .....                                   ..                                     
T Consensus       113 -~~~~~-----------------------------------~~-------------------------------------  119 (216)
T 2qfj_A          113 -PIIDQ-----------------------------------LA-------------------------------------  119 (216)
T ss_dssp             -HHHHH-----------------------------------HH-------------------------------------
T ss_pred             -hhhhh-----------------------------------hh-------------------------------------
Confidence             00000                                   00                                     


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                               ......++|||+|||.++|+++|+++|++||.|.     
T Consensus       120 -----------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-----  153 (216)
T 2qfj_A          120 -----------------------------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-----  153 (216)
T ss_dssp             -----------------------------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE-----
T ss_pred             -----------------------------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee-----
Confidence                                                     0012357999999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                         .|+|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+|..
T Consensus       154 ---~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~  204 (216)
T 2qfj_A          154 ---SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT  204 (216)
T ss_dssp             ---EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred             ---EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence               799999988899999999999999999999999999999999999999984

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.94  E-value=7.6e-26  Score=229.62  Aligned_cols=176  Identities=18%  Similarity=0.267  Sum_probs=145.4

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|+.||.|.        .|+|+++..+|.++|||||+|.+.++|..|+..|||..|.|+
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~   98 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIK--------SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR   98 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCCCEE--------EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence            468999999999999999999999999999        799999988899999999999999999999999999999999


Q ss_pred             EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160         579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  658 (773)
Q Consensus       579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l  658 (773)
                      .|.|.++.....             ...........                ....++|+|+||+..  ++         
T Consensus        99 ~l~v~~~~~~~~-------------~~~~~~~~~~~----------------~~~~~~l~v~nlp~~--~t---------  138 (216)
T 2qfj_A           99 NIKVGRPSNIGQ-------------AQPIIDQLAEE----------------ARAFNRIYVASVHQD--LS---------  138 (216)
T ss_dssp             CCEEECCSCCGG-------------GHHHHHHHHHH----------------HTTSCEEEEECCCTT--CC---------
T ss_pred             eEEEecCCCccc-------------cchhhhhhhcc----------------cCCCcEEEEeCCCCc--CC---------
Confidence            999988763211             00001111000                123589999999765  44         


Q ss_pred             HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                      +++|+++|++||.|..|.|..    +.++|+|||.|.+.++|.+|+..|||..|+||.|.|.+...+.
T Consensus       139 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~  206 (216)
T 2qfj_A          139 DDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP  206 (216)
T ss_dssp             HHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred             HHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence            389999999999999998864    4568999999999999999999999999999999999987654

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.94  E-value=8.3e-26  Score=225.73  Aligned_cols=173  Identities=17%  Similarity=0.259  Sum_probs=142.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+.. ++..|.
T Consensus        10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~   80 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT--------DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD   80 (196)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence            34578999999999999999999999999999        799999999999999999999999999999975 999999


Q ss_pred             CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160         577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  656 (773)
Q Consensus       577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~  656 (773)
                      |+.|.|.++.......           +                       .......++|+|.||+..  +++      
T Consensus        81 g~~l~v~~~~~~~~~~-----------~-----------------------~~~~~~~~~l~V~nLp~~--~t~------  118 (196)
T 1l3k_A           81 GRVVEPKRAVSREDSQ-----------R-----------------------PGAHLTVKKIFVGGIKED--TEE------  118 (196)
T ss_dssp             TEECEEEECCC---------------------------------------------CCSEEEEECCTTT--CCH------
T ss_pred             CEEeeeecccCccccc-----------c-----------------------cccCCCcceEEEeCCCCC--CCH------
Confidence            9999999987321100           0                       001123589999999765  443      


Q ss_pred             HHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcccc
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRY  724 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~  724 (773)
                         ++|+++|++||.|..|.|..    +.++|+|||.|.++++|.+|+.. +|..|+||.|.|.+...+...
T Consensus       119 ---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~  186 (196)
T 1l3k_A          119 ---HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM  186 (196)
T ss_dssp             ---HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred             ---HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence               89999999999999998763    55789999999999999999987 899999999999997766544

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.93  E-value=1.3e-25  Score=219.83  Aligned_cols=163  Identities=15%  Similarity=0.247  Sum_probs=140.2

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCC--CCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK--DFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg--~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..++|||+|||+++|+++|+++|++||.|.        +|+|++++.+|  .++|||||+|.+.++|..|+..|||..+.
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~   73 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY--------EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL   73 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence            368999999999999999999999999999        89999999876  89999999999999999999999998876


Q ss_pred             ---CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchh
Q psy2160         577 ---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVT  653 (773)
Q Consensus       577 ---g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~  653 (773)
                         ++.|.+.++.....                                       .....++|+|+||+..  +++   
T Consensus        74 ~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~l~v~nl~~~--~t~---  109 (175)
T 3nmr_A           74 PGMHHPIQMKPADSEKN---------------------------------------NAVEDRKLFIGMISKK--CTE---  109 (175)
T ss_dssp             TTCSSCCEEEECGGGCC---------------------------------------SCGGGSEEEEESCCTT--CCH---
T ss_pred             cCCccceEEcccccccc---------------------------------------ccCCCCeEEEcCCCCc--CCH---
Confidence               67888887762210                                       0113578999999765  443   


Q ss_pred             hHHHHHHHHHHHHhcCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEEec
Q psy2160         654 LILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG---QRQITAETWD  719 (773)
Q Consensus       654 ~~~~l~edl~~~f~~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~---Gr~l~v~~~d  719 (773)
                            ++|+++|++||.|..|.|..   +.++|+|||+|.++++|.+|+..|||..+.   ||+|.|.|+|
T Consensus       110 ------~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          110 ------NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             ------HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             ------HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence                  89999999999999998764   456899999999999999999999998765   4999999865

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3e-25  Score=215.14  Aligned_cols=161  Identities=19%  Similarity=0.239  Sum_probs=140.3

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||.++|+++|+++|++||.|..        |+|++++. |+++|||||+|.+.++|..|+..|||..+.|++|
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i   71 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV   71 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGGSCEEE--------EEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence            48999999999999999999999999998        99999987 8999999999999999999999999999999999


Q ss_pred             EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160         296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ  375 (773)
Q Consensus       296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e  375 (773)
                      .|.++......                                      .....++|+|+||+  ..+.+         +
T Consensus        72 ~v~~~~~~~~~--------------------------------------~~~~~~~l~v~nl~--~~~t~---------~  102 (166)
T 3md3_A           72 KINWAFQSQQS--------------------------------------SSDDTFNLFVGDLN--VNVDD---------E  102 (166)
T ss_dssp             EEEECCCCCCC--------------------------------------CCTTCEEEEEESCC--TTCCH---------H
T ss_pred             EEEEcCCCCCC--------------------------------------CCCCCceEEECCCC--CCCCH---------H
Confidence            99887632110                                      12346789999993  33333         8


Q ss_pred             HHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160         376 DLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  434 (773)
Q Consensus       376 dL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~  434 (773)
                      +|+++|+.||.|..+.+..    +.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus       103 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A          103 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             HHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            8999999999999997752    4578999999999999999999999999999999998753

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.93  E-value=7e-26  Score=220.32  Aligned_cols=160  Identities=21%  Similarity=0.280  Sum_probs=140.7

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        +|+|++++.+|.++|||||+|.+.++|..|+..  +..+.|+.
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~   72 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYGTVT--------DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKV   72 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTCCEE--------EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeE
Confidence            57999999999999999999999999999        899999998899999999999999999999974  67899999


Q ss_pred             EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160         580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ  659 (773)
Q Consensus       580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~  659 (773)
                      |.|.++...             ...                           ...++|+|.||+..  +++         
T Consensus        73 i~v~~~~~~-------------~~~---------------------------~~~~~l~V~nlp~~--~t~---------  101 (167)
T 2cjk_A           73 IDPKRAIPR-------------DEQ---------------------------DKTGKIFVGGIGPD--VRP---------  101 (167)
T ss_dssp             CCCEECCCH-------------HHH---------------------------HHCEEEEEEEECTT--CCH---------
T ss_pred             cccccccch-------------hhc---------------------------cCCCeEEECCCCCC--CCH---------
Confidence            999987621             000                           01478999999765  443         


Q ss_pred             HHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         660 QDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       660 edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      ++|+++|++||.|..|.|..    +.++|+|||.|.++++|.+|+. |||..|+||+|.|.+..++
T Consensus       102 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk  166 (167)
T 2cjk_A          102 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR  166 (167)
T ss_dssp             HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred             HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence            89999999999999998864    5678999999999999999998 8999999999999998765

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.93  E-value=7.8e-26  Score=222.00  Aligned_cols=165  Identities=19%  Similarity=0.214  Sum_probs=139.9

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.+.        . .++.+..+|.++|||||+|.+.++|..|+ .|||..|.
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~--------~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~   79 (175)
T 1fje_B           10 STTPFNLFIGNLNPNKSVAELKVAISELFAKN--------D-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF   79 (175)
T ss_dssp             CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------T-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc--------e-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC
Confidence            45679999999999999999999999999886        2 23334445889999999999999999999 59999999


Q ss_pred             CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160         577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL  656 (773)
Q Consensus       577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~  656 (773)
                      |++|.|.++.....                                      ......++|+|+||+..  +++      
T Consensus        80 g~~l~v~~~~~~~~--------------------------------------~~~~~~~~l~v~nlp~~--~t~------  113 (175)
T 1fje_B           80 GNEIKLEKPKGRDS--------------------------------------KKVRAARTLLAKNLSFN--ITE------  113 (175)
T ss_dssp             TEEEEEECCCCSSC--------------------------------------STTGGGGEEEEESCCSS--CCH------
T ss_pred             CeEEEEecCCCccc--------------------------------------cccccCCEEEEeCCCCC--CCH------
Confidence            99999999873210                                      00123589999999765  443      


Q ss_pred             HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                         ++|+++|++||.|..+ ...+.++|+|||.|.+.++|.+|+..|||..|+||+|.|.|..++
T Consensus       114 ---~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k  174 (175)
T 1fje_B          114 ---DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK  174 (175)
T ss_dssp             ---HHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred             ---HHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence               8999999999999888 445788999999999999999999999999999999999998765

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.92  E-value=1.5e-24  Score=216.55  Aligned_cols=169  Identities=17%  Similarity=0.252  Sum_probs=140.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||.|..        |+|++++.||.++|||||+|.+.++|..||.. ++..|.|+
T Consensus        12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~   82 (196)
T 1l3k_A           12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR   82 (196)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence            7899999999999999999999999999998        99999998899999999999999999999985 99999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|.|.++.......      .                            .......++|+|+||  |..+.+        
T Consensus        83 ~l~v~~~~~~~~~~------~----------------------------~~~~~~~~~l~V~nL--p~~~t~--------  118 (196)
T 1l3k_A           83 VVEPKRAVSREDSQ------R----------------------------PGAHLTVKKIFVGGI--KEDTEE--------  118 (196)
T ss_dssp             ECEEEECCC---------------------------------------------CCSEEEEECC--TTTCCH--------
T ss_pred             EeeeecccCccccc------c----------------------------cccCCCcceEEEeCC--CCCCCH--------
Confidence            99998876321100      0                            001234578999999  334433        


Q ss_pred             HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCc
Q psy2160         374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  437 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~  437 (773)
                       ++|+++|+.||.|..|.+..    +.++|+|||+|.+.++|.+|+.. +|..++|+.|.|.++..+.
T Consensus       119 -~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~  184 (196)
T 1l3k_A          119 -HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ  184 (196)
T ss_dssp             -HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred             -HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence             88999999999999997762    45789999999999999999986 8999999999999876554

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.92  E-value=3.6e-24  Score=209.51  Aligned_cols=163  Identities=15%  Similarity=0.245  Sum_probs=138.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCC--CcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK--DFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg--~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        |+|+++..+|  +++|||||+|.+.++|..|++.|++..+.
T Consensus         2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~   73 (175)
T 3nmr_A            2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYE--------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL   73 (175)
T ss_dssp             CCEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence            5689999999999999999999999999998        9999999866  89999999999999999999999998875


Q ss_pred             ---CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhH
Q psy2160         292 ---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVT  368 (773)
Q Consensus       292 ---g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~  368 (773)
                         +++|.|..+.....                                       .....++|+|+||+  ..+.+   
T Consensus        74 ~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~l~v~nl~--~~~t~---  109 (175)
T 3nmr_A           74 PGMHHPIQMKPADSEKN---------------------------------------NAVEDRKLFIGMIS--KKCTE---  109 (175)
T ss_dssp             TTCSSCCEEEECGGGCC---------------------------------------SCGGGSEEEEESCC--TTCCH---
T ss_pred             cCCccceEEcccccccc---------------------------------------ccCCCCeEEEcCCC--CcCCH---
Confidence               57888876652110                                       02236789999994  33332   


Q ss_pred             HHHHHHHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccC---CeeEEEEecC
Q psy2160         369 LILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG---QRQITAETWD  434 (773)
Q Consensus       369 ~~~ei~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~---Gr~I~v~~~~  434 (773)
                            ++|+++|++||.|..|.+..   +.++|+|||+|.+.++|.+|+..|||..+.   |++|.|.+++
T Consensus       110 ------~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          110 ------NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             ------HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             ------HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence                  88999999999999998763   346899999999999999999999998765   4999998753

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.92  E-value=6.1e-24  Score=225.17  Aligned_cols=199  Identities=16%  Similarity=0.243  Sum_probs=143.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ....++|||+|||.++|+++|+    ++|+.||.|.        .|+|++   +|.++|||||+|.+.++|..|+..|||
T Consensus         6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~--------~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g   74 (282)
T 3pgw_A            6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL--------DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG   74 (282)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE--------EEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC
Confidence            3467999999999999999966    9999999998        788876   478999999999999999999999999


Q ss_pred             ceecCeEEEEEEccccccC-----CcCCCCCCchhhhHHHHHHHHHHhhhcc--CCC------Ccc--------------
Q psy2160         573 YEIRGKKIKVERAKFTMKG-----EAYDPKLKPKKKRKKDLEKLKKAQEKLF--DWR------PDK--------------  625 (773)
Q Consensus       573 ~~i~g~~i~V~~a~~~~~~-----~~~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~------~~~--------------  625 (773)
                      ..|.|+.|+|.+++.....     ............+...............  ...      ...              
T Consensus        75 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (282)
T 3pgw_A           75 FPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM  154 (282)
T ss_pred             CeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence            9999999999999743210     0000000000000000000000000000  000      000              


Q ss_pred             --------------------------------------------ccCCCCCCCcEEEEecCCCccccccchhhHHHHHHH
Q psy2160         626 --------------------------------------------MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQD  661 (773)
Q Consensus       626 --------------------------------------------~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ed  661 (773)
                                                                  .......+.++|+|.||+..  ++         +++
T Consensus       155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~--~~---------~~~  223 (282)
T 3pgw_A          155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEE--TN---------ELM  223 (282)
T ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCc--CC---------HHH
Confidence                                                        00011234689999999754  44         389


Q ss_pred             HHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEe
Q psy2160         662 LREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETW  718 (773)
Q Consensus       662 l~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~  718 (773)
                      |+++|++||.|..|.|..+. +|+|||+|.+.++|.+|+..|||..|+ ||.|+|.|.
T Consensus       224 l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          224 LSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA  280 (282)
T ss_pred             HHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence            99999999999999887644 699999999999999999999999999 999999985

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.91  E-value=6.4e-24  Score=214.42  Aligned_cols=181  Identities=15%  Similarity=0.109  Sum_probs=134.4

Q ss_pred             CCCEEEEcCCC-CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLP-LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp-~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ++++|||+||| ..+|+++|+++|+.||.|.        +|+|+++     ++|||||+|.+.++|..||+.|||..|.|
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~--------~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g   69 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE--------KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFG   69 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE--------EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE--------EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            57899999999 7999999999999999999        7999865     37999999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcC---CCCCCchhhhHHHHHHHHHHhhhccCCCCc--cccCCCCCCCcEEEEecCCCccccccch
Q psy2160         578 KKIKVERAKFTMKGEAY---DPKLKPKKKRKKDLEKLKKAQEKLFDWRPD--KMRGERSKNESVIIVKNLFDPALFDKDV  652 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ikNl~~~~~~~~d~  652 (773)
                      ++|+|.+++........   .+...+..+..        ...+.......  ........+.++|+|+||+..  +++  
T Consensus        70 ~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~--~t~--  137 (205)
T 3tyt_A           70 QKMNVCVSKQPAIMPGQSYGLEDGSCSYKDF--------SESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLE--VTE--  137 (205)
T ss_dssp             EECEEEECSCSCCCCCSCCBCTTSCBSEEEC--------TTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTT--CCH--
T ss_pred             ceEEEEEccCCccCCCcccccccCCcccccc--------CCCccccccCcccccccccCCCcceEEEeCCCCC--CCH--
Confidence            99999999743211000   00000000000        00000000000  000011245689999999765  443  


Q ss_pred             hhHHHHHHHHHHHHhcCCce--eEEEecCC--CCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160         653 TLILEYQQDLREECSKCGHV--KKVVLHDK--HPEGVAQIFFKEPEAADACRELLNGRWFGQR  711 (773)
Q Consensus       653 ~~~~~l~edl~~~f~~fG~V--~~v~i~~~--~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr  711 (773)
                             ++|+++|++||.|  .+|.++..  .+.|+|||+|.+.++|.+||..|||..|+|+
T Consensus       138 -------~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~  193 (205)
T 3tyt_A          138 -------ENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP  193 (205)
T ss_dssp             -------HHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred             -------HHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence                   8999999999999  88988763  4569999999999999999999999999887

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.91  E-value=1.4e-24  Score=211.12  Aligned_cols=161  Identities=22%  Similarity=0.273  Sum_probs=138.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|++++.||.++|||||.|.+.++|..||..  +..+.|+
T Consensus         2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~   71 (167)
T 2cjk_A            2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK   71 (167)
T ss_dssp             GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE--------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence            4689999999999999999999999999998        99999988899999999999999999999984  6789999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .|.|.++.....                                        ....++|+|+||+  ..+.+        
T Consensus        72 ~i~v~~~~~~~~----------------------------------------~~~~~~l~V~nlp--~~~t~--------  101 (167)
T 2cjk_A           72 VIDPKRAIPRDE----------------------------------------QDKTGKIFVGGIG--PDVRP--------  101 (167)
T ss_dssp             ECCCEECCCHHH----------------------------------------HHHCEEEEEEEEC--TTCCH--------
T ss_pred             Ecccccccchhh----------------------------------------ccCCCeEEECCCC--CCCCH--------
Confidence            999977642100                                        0125689999994  33332        


Q ss_pred             HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCC
Q psy2160         374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  436 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~  436 (773)
                       ++|+++|++||.|..|.+..    +.++|+|||+|.+.++|.+|+. ++|..++|++|.|.++.++
T Consensus       102 -~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk  166 (167)
T 2cjk_A          102 -KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR  166 (167)
T ss_dssp             -HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred             -HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence             88999999999999998763    4578999999999999999998 8999999999999987654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.91  E-value=6.1e-24  Score=207.60  Aligned_cols=154  Identities=18%  Similarity=0.321  Sum_probs=130.4

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHH
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKC----G-------LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL  567 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai  567 (773)
                      ..++|||+|||.++|+++|+++|++|    |       .|.        ++++      +.++|||||+|.++++|..|+
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~--------~~~~------~~~~g~afV~f~~~~~A~~A~   68 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--------AVQI------NQDKNFAFLEFRSVDETTQAM   68 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--------EEEE------ETTTTEEEEEESSHHHHHHHG
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCcee--------eeEe------cCCCCEEEEEeCCHHHHHHHH
Confidence            35899999999999999999999999    5       333        3444      345899999999999999999


Q ss_pred             HHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccc
Q psy2160         568 SILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPAL  647 (773)
Q Consensus       568 ~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~  647 (773)
                       .|||..+.|++|.|.++.....                                        ....++|+|+||+..  
T Consensus        69 -~~~~~~~~g~~i~v~~~~~~~~----------------------------------------~~~~~~l~v~nlp~~--  105 (172)
T 2g4b_A           69 -AFDGIIFQGQSLKIRRPHDYQP----------------------------------------LPGAHKLFIGGLPNY--  105 (172)
T ss_dssp             -GGTTCEETTEECEEECCSSCCC----------------------------------------CTTTTCEEEECCCTT--
T ss_pred             -HhCCcEecCceeeecCCcccCC----------------------------------------CCCCCEEEEEcCCCc--
Confidence             8999999999999998762110                                        112578999999765  


Q ss_pred             cccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q psy2160         648 FDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW  718 (773)
Q Consensus       648 ~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~  718 (773)
                      +++         ++|+++|++||.|..|.+..    +.++|+|||.|.++++|.+|+..|||..|+||+|.|.+.
T Consensus       106 ~t~---------~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A          106 LND---------DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             CCH---------HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCH---------HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence            443         89999999999999998854    455799999999999999999999999999999999874

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.91  E-value=2.4e-24  Score=211.30  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=137.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.+..        +.+ ++..+|.++|||||+|.+.++|..||+ ||+..|.|+
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--------~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~   81 (175)
T 1fje_B           12 TPFNLFIGNLNPNKSVAELKVAISELFAKND--------LAV-VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN   81 (175)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--------CCC-CEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--------EEE-EECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCe
Confidence            7899999999999999999999999998875        233 333458999999999999999999996 999999999


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      +|+|.++......                                      .....++|+|+||+  ..+.+        
T Consensus        82 ~l~v~~~~~~~~~--------------------------------------~~~~~~~l~v~nlp--~~~t~--------  113 (175)
T 1fje_B           82 EIKLEKPKGRDSK--------------------------------------KVRAARTLLAKNLS--FNITE--------  113 (175)
T ss_dssp             EEEEECCCCSSCS--------------------------------------TTGGGGEEEEESCC--SSCCH--------
T ss_pred             EEEEecCCCcccc--------------------------------------ccccCCEEEEeCCC--CCCCH--------
Confidence            9999887632100                                      02346799999994  33332        


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCC
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK  436 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~  436 (773)
                       ++|+++|+.||.|..+ ...+.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++.++
T Consensus       114 -~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k  174 (175)
T 1fje_B          114 -DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK  174 (175)
T ss_dssp             -HHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred             -HHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence             8899999999999888 445678999999999999999999999999999999999987654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.91  E-value=1.8e-23  Score=209.15  Aligned_cols=186  Identities=15%  Similarity=0.213  Sum_probs=138.2

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccC-C--CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVD-T--NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~-~--~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..... .  ...++.+      +.++|||||+|.+.++|..|+ .|||..|
T Consensus         3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~   75 (198)
T 2yh0_A            3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF   75 (198)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred             ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence            4689999999999999999999999954331000 0  0002333      456899999999999999999 8999999


Q ss_pred             cCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhH
Q psy2160         576 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLI  655 (773)
Q Consensus       576 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~  655 (773)
                      .|++|.|.++.............                    ....+...........++|+|.||+..  ++      
T Consensus        76 ~g~~i~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~v~nl~~~--~~------  127 (198)
T 2yh0_A           76 QGQSLKIRRPHDYQPLPGMSENP--------------------SVYVPGVVSTVVPDSAHKLFIGGLPNY--LN------  127 (198)
T ss_dssp             TTEEEEEECCCCCCCCCCSSSCS--------------------SCCCTTSSCCCSSCCCCEEEEECCCTT--CC------
T ss_pred             cCceEEEeCCCCCCCCCCCcCCC--------------------cCCCCCCccCCCCCCCCEEEEeCCCCC--CC------
Confidence            99999999987432111000000                    000001111122345789999999765  44      


Q ss_pred             HHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160         656 LEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT  722 (773)
Q Consensus       656 ~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~  722 (773)
                         +++|+++|++||.|..|.+..    +.++|+|||.|.++++|.+|+..|||..|+||.|.|.+...+.
T Consensus       128 ---~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  195 (198)
T 2yh0_A          128 ---DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA  195 (198)
T ss_dssp             ---HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred             ---HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence               389999999999999998764    4568999999999999999999999999999999999977654

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.91  E-value=1.3e-23  Score=216.00  Aligned_cols=192  Identities=19%  Similarity=0.212  Sum_probs=143.8

Q ss_pred             CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ...+++|||+|||. ++|+++|+++|+.||.|.        .|+|+++.     +|||||+|.+.++|.+|++.|||..|
T Consensus        31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~--------~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~   97 (229)
T 2adc_A           31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL   97 (229)
T ss_dssp             CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE--------EEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE--------EEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence            45679999999999 999999999999999998        79999875     78999999999999999999999999


Q ss_pred             cCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCC--ccccCCCCCCCcEEEEecCCCccccccchh
Q psy2160         576 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRP--DKMRGERSKNESVIIVKNLFDPALFDKDVT  653 (773)
Q Consensus       576 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~  653 (773)
                      .|+.|.|.++..................+.       ...........  .........+.++|+|.||+..  ++    
T Consensus        98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~--~t----  164 (229)
T 2adc_A           98 HGKPIRITLSKHQNVQLPREGQEDQGLTKD-------YGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS--VS----  164 (229)
T ss_dssp             SSSBCEEECCSCCCCCCCCSSSSTTTTEEE-------CTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT--CC----
T ss_pred             CCeEEEEEEecCccccCccccccccccccc-------cccCcccccCCccccccccCCCCCCEEEEeCCCcc--CC----
Confidence            999999999974321000000000000000       00000000000  0000112345799999999765  44    


Q ss_pred             hHHHHHHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEecC
Q psy2160         654 LILEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWDG  720 (773)
Q Consensus       654 ~~~~l~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~dg  720 (773)
                           +++|+++|++|| .|..|.|... .+|+|||+|.+.++|.+|+..|||..|+ ||+|.|.|...
T Consensus       165 -----~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~  227 (229)
T 2adc_A          165 -----EEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  227 (229)
T ss_dssp             -----HHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             -----HHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence                 389999999999 9999988552 3699999999999999999999999999 99999999654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.91  E-value=2.3e-23  Score=203.48  Aligned_cols=159  Identities=21%  Similarity=0.323  Sum_probs=138.6

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhcc----C-------CEEEEEeeCCCCCeEEEEEecCHHHHHHHHH
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC----G-------HVKKVVLHDKHPEGVAQIFFKEPEAADACRE  416 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~----G-------~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~  416 (773)
                      .+++|+|+||  |..+.+         ++|+++|+.|    |       .|..+.+.  .++|+|||.|.+.++|.+|+ 
T Consensus         3 ~~~~l~V~nL--p~~~t~---------~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-   68 (172)
T 2g4b_A            3 SARRLYVGNI--PFGITE---------EAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-   68 (172)
T ss_dssp             GGGEEEEESC--CTTCCH---------HHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-
T ss_pred             cccEEEEcCC--CcccCH---------HHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-
Confidence            4689999999  344443         8899999999    7       77777665  35899999999999999999 


Q ss_pred             HhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhc
Q psy2160         417 LLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK  496 (773)
Q Consensus       417 ~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~  496 (773)
                      .|||..+.|+.|.+.+.....                                                          .
T Consensus        69 ~~~~~~~~g~~i~v~~~~~~~----------------------------------------------------------~   90 (172)
T 2g4b_A           69 AFDGIIFQGQSLKIRRPHDYQ----------------------------------------------------------P   90 (172)
T ss_dssp             GGTTCEETTEECEEECCSSCC----------------------------------------------------------C
T ss_pred             HhCCcEecCceeeecCCcccC----------------------------------------------------------C
Confidence            799999999999997643211                                                          1


Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+++.++.+|.++|+|||+|.+.++|.+|+..|||..|.
T Consensus        91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~  162 (172)
T 2g4b_A           91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG  162 (172)
T ss_dssp             CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence            12368999999999999999999999999998        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|.|.+|.
T Consensus       163 g~~l~V~~As  172 (172)
T 2g4b_A          163 DKKLLVQRAS  172 (172)
T ss_dssp             TEECEEEECC
T ss_pred             CeEEEEEeCC
Confidence            9999999873

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.91  E-value=5.6e-24  Score=213.27  Aligned_cols=190  Identities=19%  Similarity=0.216  Sum_probs=142.4

Q ss_pred             CCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+++|||+|||. ++|+++|+++|+.||.|.        .|+|+.+.     +|||||+|.+.++|..|+..|||..|.|
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~--------~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g   68 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG   68 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTCCCS--------EEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence            368999999999 999999999999999998        79998774     7899999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCc--cccCCCCCCCcEEEEecCCCccccccchhhH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPD--KMRGERSKNESVIIVKNLFDPALFDKDVTLI  655 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~  655 (773)
                      +.|.|.++..................+.     .  ...........  ........+.++|+|.||+..  ++      
T Consensus        69 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~--~~------  133 (198)
T 1qm9_A           69 KPIRITLSKHQNVQLPREGQEDQGLTKD-----Y--GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS--VS------  133 (198)
T ss_dssp             CCCEEEECCCCSCCCSSSSSSSSSCEEE-----S--SCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTT--CC------
T ss_pred             eEEEEEEecCCCcCCCCcCCcccccccc-----c--cCCchhhccCccccccccCCCCccEEEEeCCCCC--CC------
Confidence            9999999975421100000000000000     0  00000000000  000112345799999999765  44      


Q ss_pred             HHHHHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEecC
Q psy2160         656 LEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWDG  720 (773)
Q Consensus       656 ~~l~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~dg  720 (773)
                         +++|+++|++|| .|..|.|.+. .+|+|||+|.+.++|.+|+..|||..|+ ||+|.|.|...
T Consensus       134 ---~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~  196 (198)
T 1qm9_A          134 ---EEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  196 (198)
T ss_dssp             ---HHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred             ---HHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence               389999999999 9999988653 3799999999999999999999999999 99999999654

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.89  E-value=2.1e-22  Score=213.32  Aligned_cols=197  Identities=18%  Similarity=0.245  Sum_probs=141.6

Q ss_pred             CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      .+++|||+|||.++|+++|+    ++|++||.|..        |+|.+   +|+++|||||+|.+.++|..||+.|||..
T Consensus         8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~--------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~   76 (282)
T 3pgw_A            8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP   76 (282)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE--------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCe
Confidence            68999999999999999976    89999999998        88876   48999999999999999999999999999


Q ss_pred             ecCeEEEEEeecccccCCC-CCCCCchh-hhhHHHHHHHH-HH-Hhhhcc---CCC------Cc----------------
Q psy2160         290 IRGKKIKVERAKFTMKGEA-YDPKLKPK-KKRKKDLEKLK-KA-QEKLFD---WRP------DK----------------  340 (773)
Q Consensus       290 l~g~~I~V~~A~~~~k~~~-~~p~~~~~-~~~~k~~~~~~-k~-~~k~~~---~~~------~~----------------  340 (773)
                      |.|++|+|.++........ .......+ +.......... .. ......   ..+      ..                
T Consensus        77 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 3pgw_A           77 FYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH  156 (282)
T ss_pred             eCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence            9999999999874321100 00000000 00000000000 00 000000   000      00                


Q ss_pred             ------------------------------------------cCCCCCCCCcEEEEecCCCccccchhhHHHHHHHHHHH
Q psy2160         341 ------------------------------------------MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR  378 (773)
Q Consensus       341 ------------------------------------------~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~  378 (773)
                                                                .........++|+|+||+  ..+.+         ++|+
T Consensus       157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~~---------~~l~  225 (282)
T 3pgw_A          157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP--EETNE---------LMLS  225 (282)
T ss_pred             CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCC--CcCCH---------HHHH
Confidence                                                      000012245789999993  33332         8999


Q ss_pred             HHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEec
Q psy2160         379 EECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETW  433 (773)
Q Consensus       379 e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~~  433 (773)
                      ++|++||.|..|.+.... +|+|||+|.+.++|.+|+..|||..|. |+.|.|.+.
T Consensus       226 ~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a  280 (282)
T 3pgw_A          226 MLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA  280 (282)
T ss_pred             HHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence            999999999999888543 699999999999999999999999999 999999875

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.89  E-value=1.7e-22  Score=202.03  Aligned_cols=180  Identities=20%  Similarity=0.294  Sum_probs=142.2

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhcc----C-------CEEEEEeeCCCCCeEEEEEecCHHHHHHHHH
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC----G-------HVKKVVLHDKHPEGVAQIFFKEPEAADACRE  416 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~----G-------~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~  416 (773)
                      .+++|+|+||  |..+.+         ++|+++|+.|    |       .|..+.+.  .++|+|||.|.+.++|.+|+ 
T Consensus         3 ~~~~l~V~nL--p~~~te---------~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-   68 (198)
T 2yh0_A            3 MARRLYVGNI--PFGITE---------EAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-   68 (198)
T ss_dssp             -CCEEEEESC--CTTCCH---------HHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-
T ss_pred             ceeEEEEcCC--CCCCCH---------HHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-
Confidence            3689999999  344443         8899999999    5       67766654  45899999999999999999 


Q ss_pred             HhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhc
Q psy2160         417 LLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK  496 (773)
Q Consensus       417 ~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~  496 (773)
                      .|||..+.|+.|.|.+..........                      ......      ..|...          ....
T Consensus        69 ~l~g~~~~g~~i~v~~~~~~~~~~~~----------------------~~~~~~------~~~~~~----------~~~~  110 (198)
T 2yh0_A           69 AFDGIIFQGQSLKIRRPHDYQPLPGM----------------------SENPSV------YVPGVV----------STVV  110 (198)
T ss_dssp             GGTTEEETTEEEEEECCCCCCCCCCS----------------------SSCSSC------CCTTSS----------CCCS
T ss_pred             HhcCCEEcCceEEEeCCCCCCCCCCC----------------------cCCCcC------CCCCCc----------cCCC
Confidence            79999999999999876533210000                      000000      000000          0012


Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+++.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus       111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~  182 (198)
T 2yh0_A          111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG  182 (198)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE--------EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34679999999999999999999999999998        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.+|..
T Consensus       183 g~~l~v~~a~~  193 (198)
T 2yh0_A          183 DKKLLVQRASV  193 (198)
T ss_dssp             TEECEEEESCC
T ss_pred             CEEEEEEECCC
Confidence            99999999984

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.89  E-value=1.8e-22  Score=203.82  Aligned_cols=196  Identities=16%  Similarity=0.238  Sum_probs=139.1

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCee
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ  427 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~  427 (773)
                      .+++|+|+||. |..+++         ++|+++|+.||.|.+|.+... .+|+|||+|.+.++|..|+..|||..+.|++
T Consensus         3 ~~~~l~V~nL~-~~~~~~---------~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~   71 (205)
T 3tyt_A            3 DSPVLMVYGLD-QSKMNC---------DRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQK   71 (205)
T ss_dssp             CCSEEEEECCC-TTTCCH---------HHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCEEEEeCCC-cccCCH---------HHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence            36799999993 234443         789999999999999988754 4899999999999999999999999999999


Q ss_pred             EEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcC
Q psy2160         428 ITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSN  507 (773)
Q Consensus       428 I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~n  507 (773)
                      |.|.+...........           ..  +... ......+  .+.. ...+....    .........+.++|||+|
T Consensus        72 l~v~~s~~~~~~p~~~-----------~~--~~~~-~~~~~~~--~~~~-~~r~~~~~----~~~~~~~~~p~~~l~v~N  130 (205)
T 3tyt_A           72 MNVCVSKQPAIMPGQS-----------YG--LEDG-SCSYKDF--SESR-NNRFSTPE----QAAKNRIQHPSNVLHFFN  130 (205)
T ss_dssp             CEEEECSCSCCCCCSC-----------CB--CTTS-CBSEEEC--TTCT-TCSCSSHH----HHTTSCCCCCCSEEEEEE
T ss_pred             EEEEEccCCccCCCcc-----------cc--cccC-Ccccccc--CCCc-cccccCcc----cccccccCCCcceEEEeC
Confidence            9999865332100000           00  0000 0000000  0000 00000000    000001124568999999


Q ss_pred             CCCCCCHHHHHHHHHhcCcc--eeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe----EEE
Q psy2160         508 LPLDLTQEEFVEVMQKCGLV--MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK----KIK  581 (773)
Q Consensus       508 Lp~~~t~e~L~~~F~~~G~I--~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~----~i~  581 (773)
                      ||.++|+++|+++|+.||.|  .        +|+++.+.  |.++|+|||+|.+.++|..||..|||..|.|+    ++.
T Consensus       131 Lp~~~t~~~L~~~F~~~G~v~~~--------~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~  200 (205)
T 3tyt_A          131 APLEVTEENFFEICDELGVKRPT--------SVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT  200 (205)
T ss_dssp             ECTTCCHHHHHHHHHHHTCCCCS--------EEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred             CCCCCCHHHHHHHHHhcCCcceE--------EEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence            99999999999999999998  6        78998876  55679999999999999999999999999875    677


Q ss_pred             EEEc
Q psy2160         582 VERA  585 (773)
Q Consensus       582 V~~a  585 (773)
                      |.+|
T Consensus       201 vk~~  204 (205)
T 3tyt_A          201 LKLC  204 (205)
T ss_dssp             CEEE
T ss_pred             EEec
Confidence            7765

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.89  E-value=9.6e-23  Score=213.78  Aligned_cols=154  Identities=21%  Similarity=0.328  Sum_probs=135.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .|+|.+      ++|||||+|.+.++|..|+..|||..|.|
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g   85 (261)
T 3sde_A           20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS--------EVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKS   85 (261)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS--------EEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence            4568999999999999999999999999998        788854      37999999999999999999999999999


Q ss_pred             eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160         578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE  657 (773)
Q Consensus       578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~  657 (773)
                      +.|.|.++..                                              .++|+|.||+..  +++       
T Consensus        86 ~~l~v~~a~~----------------------------------------------~~~l~v~nl~~~--~t~-------  110 (261)
T 3sde_A           86 RPLRIRFATH----------------------------------------------GAALTVKNLSPV--VSN-------  110 (261)
T ss_dssp             EECEEEECCC----------------------------------------------SSEEEEESCCTT--CCH-------
T ss_pred             ceeEeeeccc----------------------------------------------CCcccccCCCCC--CCH-------
Confidence            9999999871                                              368999999765  443       


Q ss_pred             HHHHHHHHHhcCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHh-CCceeC---CeEEEEEEecCcc
Q psy2160         658 YQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELL-NGRWFG---QRQITAETWDGKT  722 (773)
Q Consensus       658 l~edl~~~f~~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~l-nGr~f~---Gr~l~v~~~dgk~  722 (773)
                        ++|+++|++||.|..|.|..   +.+.|+|||.|.+.++|.+|+..| +|.++.   ||+|.|.+.+...
T Consensus       111 --~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~  180 (261)
T 3sde_A          111 --ELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD  180 (261)
T ss_dssp             --HHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred             --HHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence              89999999999999997753   556899999999999999999999 556665   9999999987654

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.88  E-value=4.6e-22  Score=204.44  Aligned_cols=188  Identities=21%  Similarity=0.234  Sum_probs=140.1

Q ss_pred             CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||. ++|+++|+++|++||.|..        |+|+++.     +|||||+|.+.++|.+||+.||+..|.|
T Consensus        33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~--------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g   99 (229)
T 2adc_A           33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG   99 (229)
T ss_dssp             CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence            789999999999 9999999999999999998        9998765     6899999999999999999999999999


Q ss_pred             eEEEEEeecccccCCCCCCCCchhhh-hHHHHHHHHHHHhhhccCCCC--ccCCCCCCCCcEEEEecCCCccccchhhHH
Q psy2160         293 KKIKVERAKFTMKGEAYDPKLKPKKK-RKKDLEKLKKAQEKLFDWRPD--KMRGERSKNESVIIVKNLFDPALFDKDVTL  369 (773)
Q Consensus       293 ~~I~V~~A~~~~k~~~~~p~~~~~~~-~~k~~~~~~k~~~k~~~~~~~--~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~  369 (773)
                      ++|.|.++.......   +....... ..+.     ............  .........+++|+|+||+  ..+.+    
T Consensus       100 ~~l~v~~a~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp--~~~t~----  165 (229)
T 2adc_A          100 KPIRITLSKHQNVQL---PREGQEDQGLTKD-----YGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP--PSVSE----  165 (229)
T ss_dssp             SBCEEECCSCCCCCC---CCSSSSTTTTEEE-----CTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCC--TTCCH----
T ss_pred             eEEEEEEecCccccC---ccccccccccccc-----cccCcccccCCccccccccCCCCCCEEEEeCCC--ccCCH----
Confidence            999999887432111   00000000 0000     000000000000  0000112346899999993  33332    


Q ss_pred             HHHHHHHHHHHhhccC-CEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEecC
Q psy2160         370 ILEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWD  434 (773)
Q Consensus       370 ~~ei~edL~e~f~k~G-~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~~~  434 (773)
                           ++|+++|+.|| .|..|.+... .+|+|||+|.+.++|.+|+..|||..++ |+.|.|.+..
T Consensus       166 -----~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~  226 (229)
T 2adc_A          166 -----EDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK  226 (229)
T ss_dssp             -----HHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred             -----HHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence                 89999999999 9999988543 4799999999999999999999999999 9999998864

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.88  E-value=2.3e-22  Score=201.48  Aligned_cols=189  Identities=19%  Similarity=0.196  Sum_probs=139.4

Q ss_pred             CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||. ++|+++|+++|++||.|..        |+|+++.     +|||||+|.+.++|..|+..|||..|.|
T Consensus         2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g   68 (198)
T 1qm9_A            2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG   68 (198)
T ss_dssp             CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSE--------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence            368999999999 9999999999999999998        9998764     6899999999999999999999999999


Q ss_pred             eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCc--cCCCCCCCCcEEEEecCCCccccchhhHHH
Q psy2160         293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK--MRGERSKNESVIIVKNLFDPALFDKDVTLI  370 (773)
Q Consensus       293 ~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~--~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~  370 (773)
                      ++|+|.++..................+..       .........+..  ........+++|+|+||+  ..+.+     
T Consensus        69 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~~-----  134 (198)
T 1qm9_A           69 KPIRITLSKHQNVQLPREGQEDQGLTKDY-------GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP--PSVSE-----  134 (198)
T ss_dssp             CCCEEEECCCCSCCCSSSSSSSSSCEEES-------SCCCTTSSSSCCCCCCSCCCCCCCEEEECCCC--TTCCH-----
T ss_pred             eEEEEEEecCCCcCCCCcCCccccccccc-------cCCchhhccCccccccccCCCCccEEEEeCCC--CCCCH-----
Confidence            99999998743211100000000000000       000000000000  000112347899999994  33332     


Q ss_pred             HHHHHHHHHHhhccC-CEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEecC
Q psy2160         371 LEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWD  434 (773)
Q Consensus       371 ~ei~edL~e~f~k~G-~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~~~  434 (773)
                          ++|+++|++|| .|..|.+... .+|+|||+|.+.++|.+|+..|||..++ |++|.|.+..
T Consensus       135 ----~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~  195 (198)
T 1qm9_A          135 ----EDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK  195 (198)
T ss_dssp             ----HHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred             ----HHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence                88999999999 9999988643 3899999999999999999999999999 9999998864

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.87  E-value=2.2e-21  Score=203.38  Aligned_cols=157  Identities=17%  Similarity=0.213  Sum_probs=138.1

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  425 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G  425 (773)
                      ....++|||+||+  ..+.+         ++|+++|+.||.|..|.+..  ++|+|||.|.+.++|.+|+..|||..+.|
T Consensus        19 ~~~~~~l~V~nLp--~~~te---------~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g   85 (261)
T 3sde_A           19 YTQRCRLFVGNLP--TDITE---------EDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKS   85 (261)
T ss_dssp             SCGGGEEEEESCC--TTCCH---------HHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCCEEEEECCC--CCCCH---------HHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence            3556799999993  33433         89999999999999998863  48999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEE
Q psy2160         426 RQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYV  505 (773)
Q Consensus       426 r~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V  505 (773)
                      +.|.|.+..                                                                ..++|||
T Consensus        86 ~~l~v~~a~----------------------------------------------------------------~~~~l~v  101 (261)
T 3sde_A           86 RPLRIRFAT----------------------------------------------------------------HGAALTV  101 (261)
T ss_dssp             EECEEEECC----------------------------------------------------------------CSSEEEE
T ss_pred             ceeEeeecc----------------------------------------------------------------cCCcccc
Confidence            999997632                                                                3579999


Q ss_pred             cCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC-Cceec---CeEEE
Q psy2160         506 SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD-GYEIR---GKKIK  581 (773)
Q Consensus       506 ~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln-g~~i~---g~~i~  581 (773)
                      +|||..+|+++|+++|+.||.|.        .|.|+.+. +|.++|||||+|.+.++|..|+..|| |..+.   |++|.
T Consensus       102 ~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~  172 (261)
T 3sde_A          102 KNLSPVVSNELLEQAFSQFGPVE--------KAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI  172 (261)
T ss_dssp             ESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred             cCCCCCCCHHHHHHHHHhcCCeE--------EEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence            99999999999999999999999        79999995 69999999999999999999999995 44444   89999


Q ss_pred             EEEcccc
Q psy2160         582 VERAKFT  588 (773)
Q Consensus       582 V~~a~~~  588 (773)
                      |.++...
T Consensus       173 v~~~~~~  179 (261)
T 3sde_A          173 VEPMEQF  179 (261)
T ss_dssp             EEECCCE
T ss_pred             Eeecccc
Confidence            9998743

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=152.51  Aligned_cols=81  Identities=27%  Similarity=0.430  Sum_probs=78.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ++|+|||+|||.++|+++|+++|++||.|..        |+|++|+.||.++|||||+|.+.++|..||+.|||..|.|+
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr   89 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVES--------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK   89 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6799999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|++
T Consensus        90 ~l~V~~AkP   98 (99)
T 4fxv_A           90 TIKVSYARP   98 (99)
T ss_dssp             ECEEEECCB
T ss_pred             EEEEEEeeC
Confidence            999999864

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.76  E-value=4.2e-18  Score=164.36  Aligned_cols=146  Identities=18%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             EEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy2160         390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAK  469 (773)
Q Consensus       390 V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~  469 (773)
                      +.+....+.|++||.|.+.++|.+|+..+++....+..+.+.........                              
T Consensus         5 l~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   54 (158)
T 2kn4_A            5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV------------------------------   54 (158)
T ss_dssp             EEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE------------------------------
T ss_pred             EEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc------------------------------
Confidence            33444567999999999999999999988865433333333211000000                              


Q ss_pred             cccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCC
Q psy2160         470 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF  549 (773)
Q Consensus       470 ~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~  549 (773)
                       ...  .....            ........++|||+|||.++|+++|+++|+.||.|.        .|+|+.|+.+|.+
T Consensus        55 -~~~--~~~~~------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--------~~~i~~~~~~g~~  111 (158)
T 2kn4_A           55 -TEG--SHHHH------------HHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--------DVYIPRDRYTKES  111 (158)
T ss_dssp             -ECC--CCCSS------------CCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEECCCCSSCTTS
T ss_pred             -ccc--ccccc------------cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCCCCcc
Confidence             000  00000            001123568999999999999999999999999998        7999999888999


Q ss_pred             cceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160         550 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT  588 (773)
Q Consensus       550 kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~  588 (773)
                      +|||||+|.+.++|..||..|||..|.|++|+|.+|...
T Consensus       112 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  150 (158)
T 2kn4_A          112 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG  150 (158)
T ss_dssp             CCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred             ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            999999999999999999999999999999999999843

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.74  E-value=6.6e-18  Score=153.30  Aligned_cols=88  Identities=27%  Similarity=0.384  Sum_probs=82.3

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR  711 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr  711 (773)
                      .++++|+|+||+++.++ .|+.++.+|++||+++|++||.|.+|.|.+..++|+|||+|.+.++|.+|+..|||++|+||
T Consensus         5 ~ps~vv~L~Nm~~~~e~-~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR   83 (114)
T 3s6e_A            5 LATQCFQLSNMFNPQTE-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK   83 (114)
T ss_dssp             CCCSEEEEESSCCTTTC-CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCcEEEEECCCChHHc-cChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            46899999999999875 57889999999999999999999999998877899999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy2160         712 QITAETWDG  720 (773)
Q Consensus       712 ~l~v~~~dg  720 (773)
                      .|.|.|++.
T Consensus        84 ~i~v~~~~~   92 (114)
T 3s6e_A           84 MITAAYVPL   92 (114)
T ss_dssp             ECEEEEECH
T ss_pred             EEEEEEEcH
Confidence            999999863

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.73  E-value=1.8e-17  Score=148.55  Aligned_cols=89  Identities=25%  Similarity=0.305  Sum_probs=80.4

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCC------CCCcEEEEEecCHHHHHHHHHHhCC
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK------HPEGVAQIFFKEPEAADACRELLNG  705 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~------~~~G~afV~F~~~e~A~~Ai~~lnG  705 (773)
                      .++++|+|+||+++.++.+|. .+.+|++||+++|++||.|.+|.|+..      .+.|+|||+|.++++|.+|+..|||
T Consensus         3 ~ps~vl~L~Nm~~~~~l~~d~-~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG   81 (105)
T 3v4m_A            3 HPTEVLCLMNMVLPEELLDDE-EYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG   81 (105)
T ss_dssp             SCCSEEEEESSCCGGGSSSHH-HHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCHHHccChH-HHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence            467999999999998887554 579999999999999999999999753      4689999999999999999999999


Q ss_pred             ceeCCeEEEEEEecCc
Q psy2160         706 RWFGQRQITAETWDGK  721 (773)
Q Consensus       706 r~f~Gr~l~v~~~dgk  721 (773)
                      ++|+||+|.|.||+..
T Consensus        82 ~~f~GR~i~v~~~~~~   97 (105)
T 3v4m_A           82 RKFANRVVVTKYCDPD   97 (105)
T ss_dssp             CEETTEECEEEEECHH
T ss_pred             CEeCCCEEEEEEeCHH
Confidence            9999999999998853

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=147.99  Aligned_cols=80  Identities=28%  Similarity=0.451  Sum_probs=77.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr   89 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVE--------SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK   89 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            468999999999999999999999999999        899999999999999999999999999999999999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      +|+|.+|+
T Consensus        90 ~l~V~~Ak   97 (99)
T 4fxv_A           90 TIKVSYAR   97 (99)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEEee
Confidence            99999997

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.70  E-value=2.9e-17  Score=149.87  Aligned_cols=79  Identities=19%  Similarity=0.363  Sum_probs=73.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        |+|+++.  +.++|||||+|.+.++|..||+.||+..|.|+
T Consensus         4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~   73 (115)
T 4f25_A            4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR   73 (115)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHhccCCEEE--------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5689999999999999999999999999998        9999986  45899999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.++..
T Consensus        74 ~i~V~~a~~   82 (115)
T 4f25_A           74 KVFVGRFKS   82 (115)
T ss_dssp             ECEEEESSC
T ss_pred             EEEEEECCC
Confidence            999998763

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.70  E-value=5.1e-17  Score=147.50  Aligned_cols=98  Identities=49%  Similarity=0.972  Sum_probs=91.6

Q ss_pred             CCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160         631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  710 (773)
Q Consensus       631 ~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G  710 (773)
                      ..++++|+|+||+.+.++..++.++.+++++|+++|++||.|.+|.|.+.+++|+|||.|.+.++|.+|+..|||+.|+|
T Consensus        12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g   91 (112)
T 2dit_A           12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG   91 (112)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred             CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            45689999999999988888999999999999999999999999988888899999999999999999999999999999


Q ss_pred             eEEEEEEecCcccccccc
Q psy2160         711 RQITAETWDGKTRYKIQE  728 (773)
Q Consensus       711 r~l~v~~~dgk~~~~~~~  728 (773)
                      |+|.|.+++++++|....
T Consensus        92 r~l~v~~a~~~~~~~~~~  109 (112)
T 2dit_A           92 RQITAQAWDGTTDYQSGP  109 (112)
T ss_dssp             EECEEEECCSCCCSSCCC
T ss_pred             cEEEEEEeCCCCCcccCC
Confidence            999999999999987654

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.70  E-value=5.7e-17  Score=143.64  Aligned_cols=88  Identities=30%  Similarity=0.462  Sum_probs=84.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..+...+.|.|+|++++.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~   91 (99)
T 2la6_A           12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   91 (99)
T ss_dssp             CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            78999999999999999999999999999987778889999999998899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|++|+
T Consensus        92 ~l~V~~A~   99 (99)
T 2la6_A           92 PIKVSFAT   99 (99)
T ss_dssp             BCEEEECC
T ss_pred             EEEEEecC
Confidence            99998874

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.70  E-value=2e-17  Score=144.33  Aligned_cols=81  Identities=16%  Similarity=0.237  Sum_probs=74.7

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcC-cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc-CCceecC
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIRG  292 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G-~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~g  292 (773)
                      +++|||+|||+++|+++|+++|++|| .|..        |+|++|+.||.++|||||+|.+.++|..||+.+ ++..|.|
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~--------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g   72 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE--------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG   72 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB--------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence            47899999999999999999999999 7888        999999999999999999999999999999877 4567999


Q ss_pred             eEEEEEeeccc
Q psy2160         293 KKIKVERAKFT  303 (773)
Q Consensus       293 ~~I~V~~A~~~  303 (773)
                      ++|+|++|...
T Consensus        73 r~i~V~~a~~~   83 (91)
T 2lxi_A           73 QKVSMHYSDPK   83 (91)
T ss_dssp             EEEEEECCCSC
T ss_pred             EEEEEEEcCCC
Confidence            99999998743

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.69  E-value=8.3e-17  Score=145.58  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      |..++|||+|||+++|+++|+++|++||.|..        |+|++|+.||+++|||||+|.+.++|..||+.|||..|.|
T Consensus         4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g   75 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG   75 (110)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            36689999999999999999999999999998        9999999999999999999999999999999999999999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      ++|+|.+|.
T Consensus        76 r~i~V~~a~   84 (110)
T 3s8s_A           76 NIIHAQLDI   84 (110)
T ss_dssp             EECEEEECS
T ss_pred             eEEEEEECC
Confidence            999998875

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.69  E-value=6.7e-17  Score=147.44  Aligned_cols=79  Identities=18%  Similarity=0.358  Sum_probs=73.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||+++|+++|+++|++||.|.        +|+|++|.  +.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~   73 (115)
T 4f25_A            4 GSGNIFIKNLDKSIDNKALYDTFSAFGNIL--------SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR   73 (115)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHhccCCEE--------EEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            457899999999999999999999999999        89999997  44799999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|.++..
T Consensus        74 ~i~V~~a~~   82 (115)
T 4f25_A           74 KVFVGRFKS   82 (115)
T ss_dssp             ECEEEESSC
T ss_pred             EEEEEECCC
Confidence            999999873

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.68  E-value=1.3e-16  Score=152.59  Aligned_cols=138  Identities=16%  Similarity=0.127  Sum_probs=109.8

Q ss_pred             CCCCCeEEEEEecCHHHHHHHHHHh-CCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q psy2160         394 DKHPEGVAQIFFKEPEAADACRELL-NGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTM  472 (773)
Q Consensus       394 d~~~~G~afV~F~~~e~A~~Ai~~l-ng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~  472 (773)
                      ...-.|+++|+|.+.++|.+|+..| ||..+.| .+.+.+..+......                               
T Consensus         9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~-------------------------------   56 (150)
T 2i2y_A            9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE-------------------------------   56 (150)
T ss_dssp             CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEEC-------------------------------
T ss_pred             cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccc-------------------------------
Confidence            3456899999999999999999999 9999999 888876543221000                               


Q ss_pred             CCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcce
Q psy2160         473 KGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD  552 (773)
Q Consensus       473 ~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~  552 (773)
                      ......+..           ........++|||+|||+++|+++|+++|++||.|.        .|+|+.+     ++||
T Consensus        57 ~~~~~~~~~-----------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~-----~~g~  112 (150)
T 2i2y_A           57 GSHHHHHHM-----------HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLR--------SVWVARN-----PPGF  112 (150)
T ss_dssp             SSSSCCCCS-----------CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEE--------EEEECSS-----SCSE
T ss_pred             ccccccccc-----------cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE--------EEEEeeC-----CCcE
Confidence            000000000           011234679999999999999999999999999998        7999877     4899


Q ss_pred             EEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160         553 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF  587 (773)
Q Consensus       553 afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~  587 (773)
                      |||+|.+.++|..|+..|||..|.|++|+|.+|..
T Consensus       113 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A          113 AFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             EEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            99999999999999999999999999999999873

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.67  E-value=6.2e-17  Score=142.25  Aligned_cols=80  Identities=23%  Similarity=0.295  Sum_probs=75.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc--ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc---
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL--VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY---  288 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~--I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~---  288 (773)
                      .-.+|||+|||+++|+++|+++|++||.  |..        |+|++|+.||+++|||||+|.+.++|..||+.||+.   
T Consensus         8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~--------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~   79 (95)
T 2lkz_A            8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNN--------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP   79 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGG--------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred             ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEE--------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence            6789999999999999999999999996  455        999999999999999999999999999999999997   


Q ss_pred             -eecCeEEEEEeec
Q psy2160         289 -EIRGKKIKVERAK  301 (773)
Q Consensus       289 -~l~g~~I~V~~A~  301 (773)
                       .|.|++|.|.+|+
T Consensus        80 ~~i~Gr~i~V~~Ak   93 (95)
T 2lkz_A           80 LKIDGKTIGVDFAK   93 (95)
T ss_dssp             EEETTEEEEEEECC
T ss_pred             ceECCEEEEEEEcc
Confidence             4899999999986

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.67  E-value=6.5e-17  Score=141.10  Aligned_cols=81  Identities=15%  Similarity=0.232  Sum_probs=74.7

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-CCceecC
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIRG  577 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i~g  577 (773)
                      +++|||+|||+++|+++|+++|++|| .|.        +|+|++|+.+|.++|||||+|.+.++|.+||+.| ++..|.|
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~--------~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g   72 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAR--------EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG   72 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCS--------BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeE--------EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence            36899999999999999999999999 787        7999999999999999999999999999999887 5667999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      ++|+|.+|...
T Consensus        73 r~i~V~~a~~~   83 (91)
T 2lxi_A           73 QKVSMHYSDPK   83 (91)
T ss_dssp             EEEEEECCCSC
T ss_pred             EEEEEEEcCCC
Confidence            99999999843

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.67  E-value=2e-16  Score=143.08  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=78.2

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+.++|||+|||.++|+++|+++|++||.|.        +|+|++|+.||+++|||||+|.+.++|.+||+.|||..|.|
T Consensus         4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g   75 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVE--------EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG   75 (110)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhcCCee--------EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3578999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|+|.+|.
T Consensus        76 r~i~V~~a~   84 (110)
T 3s8s_A           76 NIIHAQLDI   84 (110)
T ss_dssp             EECEEEECS
T ss_pred             eEEEEEECC
Confidence            999999987

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.66  E-value=4e-16  Score=141.60  Aligned_cols=90  Identities=29%  Similarity=0.495  Sum_probs=84.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..+..++.|.|+|++++.+|+++|||||+|.+.++|..||+.||+..|.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   93 (113)
T 2cpe_A           14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS   93 (113)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence            77999999999999999999999999999977778888899999988899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        94 ~l~V~~a~~~  103 (113)
T 2cpe_A           94 KLKVSLARKK  103 (113)
T ss_dssp             ECEEECSSCC
T ss_pred             EEEEEECCCC
Confidence            9999998743

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.66  E-value=6.6e-16  Score=148.87  Aligned_cols=145  Identities=15%  Similarity=0.164  Sum_probs=107.2

Q ss_pred             EEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhh
Q psy2160         537 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE  616 (773)
Q Consensus       537 ~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~  616 (773)
                      .++|+++..  .++|||||+|.++++|++|+..+++....+..+.+..+.......                        
T Consensus         2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~------------------------   55 (158)
T 2kn4_A            2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT------------------------   55 (158)
T ss_dssp             EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE------------------------
T ss_pred             cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc------------------------
Confidence            478888864  689999999999999999999888754443344433222110000                        


Q ss_pred             hccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecC
Q psy2160         617 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKE  692 (773)
Q Consensus       617 ~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~  692 (773)
                         ...............++|||.||+..  +++         ++|+++|++||.|..|.|..    +.++|+|||.|.+
T Consensus        56 ---~~~~~~~~~~~~~~~~~l~v~nl~~~--~~~---------~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~  121 (158)
T 2kn4_A           56 ---EGSHHHHHHMDVEGMTSLKVDNLTYR--TSP---------DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD  121 (158)
T ss_dssp             ---CCCCCSSCCCCCCBCCEEEEESCCTT--CCH---------HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB
T ss_pred             ---ccccccccccCCCCCCEEEEeCCCCC--CCH---------HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC
Confidence               00000001111234689999999765  443         89999999999999998864    5688999999999


Q ss_pred             HHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         693 PEAADACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       693 ~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      .++|.+|+..|||..|+||.|.|.+...+
T Consensus       122 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  150 (158)
T 2kn4_A          122 KRDAEDAMDAMDGAVLDGRELRVQMARYG  150 (158)
T ss_dssp             HHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred             HHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            99999999999999999999999997754

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=140.00  Aligned_cols=83  Identities=20%  Similarity=0.288  Sum_probs=75.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc----
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY----  573 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~----  573 (773)
                      ...++|||+|||+++|+++|+++|++||.|...      +|+|++|+.||+++|||||+|.+.++|..|++.|||.    
T Consensus         7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~------~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~   80 (95)
T 2lkz_A            7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVN------NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL   80 (95)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGG------GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred             CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEE------EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence            456899999999999999999999999964311      6999999999999999999999999999999999997    


Q ss_pred             eecCeEEEEEEcc
Q psy2160         574 EIRGKKIKVERAK  586 (773)
Q Consensus       574 ~i~g~~i~V~~a~  586 (773)
                      .|.|++|.|.+|+
T Consensus        81 ~i~Gr~i~V~~Ak   93 (95)
T 2lkz_A           81 KIDGKTIGVDFAK   93 (95)
T ss_dssp             EETTEEEEEEECC
T ss_pred             eECCEEEEEEEcc
Confidence            4899999999998

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.66  E-value=2.7e-16  Score=134.93  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=77.3

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      +.+++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   76 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG   76 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEE--------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            37799999999999999999999999999998        9999998889999999999999999999999999999999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      ++|+|++|+
T Consensus        77 ~~l~v~~ak   85 (85)
T 3mdf_A           77 RTIRVNLAK   85 (85)
T ss_dssp             EECEEEECC
T ss_pred             cEEEEEEcC
Confidence            999998874

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.65  E-value=4.4e-16  Score=132.93  Aligned_cols=79  Identities=13%  Similarity=0.305  Sum_probs=76.2

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l   73 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL   73 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence            68999999999999999999999999998        9999998889999999999999999999999999999999999


Q ss_pred             EEEeecc
Q psy2160         296 KVERAKF  302 (773)
Q Consensus       296 ~V~~A~~  302 (773)
                      +|.+|..
T Consensus        74 ~v~~a~~   80 (83)
T 3md1_A           74 RINWAAK   80 (83)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9999874

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.65  E-value=4.7e-16  Score=134.03  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=76.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|++.||+..|.|+
T Consensus         5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   76 (87)
T 3bs9_A            5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR   76 (87)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CceEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            6799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        77 ~l~v~~a~~   85 (87)
T 3bs9_A           77 QIRTNWATR   85 (87)
T ss_dssp             ECEEEEEC-
T ss_pred             EEEEEecCC
Confidence            999999873

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.65  E-value=7.4e-16  Score=147.32  Aligned_cols=145  Identities=19%  Similarity=0.267  Sum_probs=112.4

Q ss_pred             EEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-CCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhh
Q psy2160         538 IKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE  616 (773)
Q Consensus       538 i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~  616 (773)
                      ..|..+-  ...+|+++|+|.+.++|.+|+..| ||..+.| .|.+.++..........                     
T Consensus         3 ~al~l~g--~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~---------------------   58 (150)
T 2i2y_A            3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS---------------------   58 (150)
T ss_dssp             EEEEECC--SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS---------------------
T ss_pred             eEeeecc--ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc---------------------
Confidence            4455553  467999999999999999999999 9999999 99999876321100000                     


Q ss_pred             hccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHH
Q psy2160         617 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA  696 (773)
Q Consensus       617 ~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A  696 (773)
                         ...............++|||.||+..  +++         ++|+++|++||.|..|.|... ++|+|||.|.+.++|
T Consensus        59 ---~~~~~~~~~~~~~~~~~l~V~nl~~~--~t~---------~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a  123 (150)
T 2i2y_A           59 ---HHHHHHMHRDSCPLDCKVYVGNLGNN--GNK---------TELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDA  123 (150)
T ss_dssp             ---SSCCCCSCSSSSTTSCEEEEESCCSC--CSC---------HHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHH
T ss_pred             ---ccccccccccCCCCCCEEEEeCCCCC--CCH---------HHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHH
Confidence               00000011122345689999999765  444         899999999999999988765 689999999999999


Q ss_pred             HHHHHHhCCceeCCeEEEEEEecCc
Q psy2160         697 DACRELLNGRWFGQRQITAETWDGK  721 (773)
Q Consensus       697 ~~Ai~~lnGr~f~Gr~l~v~~~dgk  721 (773)
                      .+|+..|||..|+||+|.|.+..++
T Consensus       124 ~~A~~~l~g~~~~g~~l~v~~a~~~  148 (150)
T 2i2y_A          124 ADAVRELDGRTLCGCRVRVELSNGE  148 (150)
T ss_dssp             HHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred             HHHHHHcCCCEECCeEEEEEEcCCC
Confidence            9999999999999999999997654

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.64  E-value=3.6e-16  Score=142.83  Aligned_cols=82  Identities=28%  Similarity=0.573  Sum_probs=73.4

Q ss_pred             CCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCC--------CCCcEEEEEecCHHHHHHHHHHhC
Q psy2160         633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK--------HPEGVAQIFFKEPEAADACRELLN  704 (773)
Q Consensus       633 ~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~--------~~~G~afV~F~~~e~A~~Ai~~ln  704 (773)
                      +++||+|+||+++.++.+      +|++||+++|++||.|.+|.|+..        .+.|+|||+|.++++|.+|+..||
T Consensus        19 ps~vl~L~Nm~~~~el~d------dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln   92 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN   92 (118)
T ss_dssp             SCCEEEEESCSCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHH------HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence            479999999999977654      467999999999999999988753        235999999999999999999999


Q ss_pred             CceeCCeEEEEEEecC
Q psy2160         705 GRWFGQRQITAETWDG  720 (773)
Q Consensus       705 Gr~f~Gr~l~v~~~dg  720 (773)
                      |++|+||.|.|.||+.
T Consensus        93 Gr~f~GR~i~v~~~~~  108 (118)
T 3ue2_A           93 GRWFAGRKVVAEVYDQ  108 (118)
T ss_dssp             TCEETTEECEEEEECH
T ss_pred             CCEECCcEEEEEEcCh
Confidence            9999999999999986

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.64  E-value=5.2e-16  Score=133.10  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=77.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.++|..|++.|||..|.|
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   76 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG   76 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEE--------EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            4679999999999999999999999999999        79999998889999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      ++|+|++|+
T Consensus        77 ~~l~v~~ak   85 (85)
T 3mdf_A           77 RTIRVNLAK   85 (85)
T ss_dssp             EECEEEECC
T ss_pred             cEEEEEEcC
Confidence            999999885

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.64  E-value=1.9e-16  Score=137.79  Aligned_cols=79  Identities=23%  Similarity=0.313  Sum_probs=72.0

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcC--cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G--~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+|||+|||.++|+++|+++|++||  .|..        |+|++++.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~--------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr   73 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ   73 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCC--------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE--------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence            5799999999999999999999999  8888        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|..+..
T Consensus        74 ~i~V~~~~~   82 (90)
T 3p5t_L           74 NPVVTPSNK   82 (90)
T ss_dssp             CCEECCC--
T ss_pred             EEEEEECCC
Confidence            999988763

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.64  E-value=5.2e-16  Score=137.40  Aligned_cols=90  Identities=30%  Similarity=0.460  Sum_probs=81.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|..+...+.|.|+|+.++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~   89 (99)
T 2la6_A           10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS   89 (99)
T ss_dssp             CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            45679999999999999999999999999999444444444999999989999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|+|.+|+
T Consensus        90 g~~l~V~~A~   99 (99)
T 2la6_A           90 GNPIKVSFAT   99 (99)
T ss_dssp             SSBCEEEECC
T ss_pred             CcEEEEEecC
Confidence            9999999874

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.64  E-value=7.8e-16  Score=136.15  Aligned_cols=82  Identities=23%  Similarity=0.352  Sum_probs=78.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   78 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR   78 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            6799999999999999999999999999998        99999997899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        79 ~l~V~~a~~~   88 (99)
T 1whw_A           79 MLHVLPSTIK   88 (99)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEcCCC
Confidence            9999998754

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.63  E-value=8.5e-16  Score=132.39  Aligned_cols=81  Identities=19%  Similarity=0.324  Sum_probs=76.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+++.++.+|.++|||||+|.+.++|..|+..|||..+.|
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g   75 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRIS--------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG   75 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            3578999999999999999999999999998        89999998889999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|+|.+|+
T Consensus        76 ~~l~v~~a~   84 (87)
T 3bs9_A           76 RQIRTNWAT   84 (87)
T ss_dssp             EECEEEEEC
T ss_pred             eEEEEEecC
Confidence            999999997

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.63  E-value=1.6e-16  Score=141.18  Aligned_cols=80  Identities=14%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             CccEEEEcCCCC------CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPL------DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~------~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      .+++|||+|||.      ++++++|+++|++||.|..        |+|++++.||+++|||||+|.+.++|..||+.|||
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng   76 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG   76 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence            578999999999      9999999999999999998        99999999999999999999999999999999999


Q ss_pred             ceecC-eEEEEEeec
Q psy2160         288 YEIRG-KKIKVERAK  301 (773)
Q Consensus       288 ~~l~g-~~I~V~~A~  301 (773)
                      ..|.| ++|+|.+|.
T Consensus        77 ~~~~g~r~l~V~~a~   91 (100)
T 3ns6_A           77 KRLDLKHRLFLYTMK   91 (100)
T ss_dssp             CBSSSSCBCEEEESH
T ss_pred             cccCCCeEEEEEECc
Confidence            99999 999999886

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.63  E-value=1e-15  Score=130.59  Aligned_cols=79  Identities=13%  Similarity=0.305  Sum_probs=76.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||.++|+++|+++|++||.|.        .|++++++.+|.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l   73 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYL--------SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL   73 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence            6899999999999999999999999999        79999998889999999999999999999999999999999999


Q ss_pred             EEEEccc
Q psy2160         581 KVERAKF  587 (773)
Q Consensus       581 ~V~~a~~  587 (773)
                      +|.+|..
T Consensus        74 ~v~~a~~   80 (83)
T 3md1_A           74 RINWAAK   80 (83)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9999983

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=1.4e-15  Score=133.36  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=77.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   85 (95)
T 2cqc_A           14 PNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR   85 (95)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            7899999999999999999999999999998        99999999899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|++|+
T Consensus        86 ~l~v~~a~   93 (95)
T 2cqc_A           86 RIRVSGPS   93 (95)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEecC
Confidence            99999876

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=8e-16  Score=134.93  Aligned_cols=82  Identities=26%  Similarity=0.428  Sum_probs=78.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.||.++|||||+|.+.++|..||+.||+..|.|+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   75 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR   75 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence            6799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        76 ~l~V~~a~~~   85 (95)
T 2dnz_A           76 PMRVGHVTER   85 (95)
T ss_dssp             CCEEEESSCC
T ss_pred             EEEEEEcccc
Confidence            9999998743

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=5.8e-16  Score=135.56  Aligned_cols=80  Identities=30%  Similarity=0.494  Sum_probs=77.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..|++.||+..|.|+
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   86 (94)
T 2e5h_A           15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR   86 (94)
T ss_dssp             CTTSEEEESCCTTSCHHHHHHHTTTTSCEEE--------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence            7799999999999999999999999999998        99999999899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|++|+
T Consensus        87 ~l~v~~ak   94 (94)
T 2e5h_A           87 VIKASIAI   94 (94)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999874

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.63  E-value=8.1e-16  Score=135.33  Aligned_cols=80  Identities=29%  Similarity=0.466  Sum_probs=77.0

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      +++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|++
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   73 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF   73 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            589999999999999999999999999998        999999988999999999999999999999999999999999


Q ss_pred             EEEEeecc
Q psy2160         295 IKVERAKF  302 (773)
Q Consensus       295 I~V~~A~~  302 (773)
                      |+|.+|..
T Consensus        74 l~V~~a~~   81 (96)
T 2x1f_A           74 LKCGYSSN   81 (96)
T ss_dssp             CEEEECSC
T ss_pred             EEEEEcCC
Confidence            99999874

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=9.5e-16  Score=136.40  Aligned_cols=82  Identities=21%  Similarity=0.280  Sum_probs=78.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   82 (102)
T 2cqb_A           11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR   82 (102)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhccCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            7799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        83 ~l~V~~a~~~   92 (102)
T 2cqb_A           83 TIRVNLAKPM   92 (102)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEeCCCC
Confidence            9999998754

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.63  E-value=9.3e-16  Score=134.78  Aligned_cols=81  Identities=21%  Similarity=0.388  Sum_probs=77.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeE-EEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i-~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        | +|++++.+|.++|||||+|.+.++|..||..||+..|.|
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g   75 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ--------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN   75 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCBSS--------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            6799999999999999999999999999998        8 999998889999999999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        76 ~~l~v~~a~~   85 (96)
T 1x5t_A           76 RPITVSYAFK   85 (96)
T ss_dssp             EECEEEESCC
T ss_pred             EEEEEEEecc
Confidence            9999999874

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.62  E-value=1.5e-15  Score=131.01  Aligned_cols=78  Identities=22%  Similarity=0.379  Sum_probs=74.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        |+|++++.||+++|||||+|.+.++|..||+ +++..|.|+
T Consensus        10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~   80 (87)
T 3s7r_A           10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD--------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR   80 (87)
T ss_dssp             CTTEEEEECCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE
Confidence            7799999999999999999999999999998        9999999899999999999999999999997 588899999


Q ss_pred             EEEEEee
Q psy2160         294 KIKVERA  300 (773)
Q Consensus       294 ~I~V~~A  300 (773)
                      +|.|.+|
T Consensus        81 ~i~v~~A   87 (87)
T 3s7r_A           81 VIDPKKA   87 (87)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999875

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.62  E-value=2.2e-15  Score=137.17  Aligned_cols=82  Identities=21%  Similarity=0.396  Sum_probs=78.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   95 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK   95 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            6799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        96 ~l~V~~a~~~  105 (115)
T 2cpz_A           96 RLKVQLKRSK  105 (115)
T ss_dssp             ECEEECCCCS
T ss_pred             EEEEEEcCCC
Confidence            9999998743

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.6e-15  Score=137.68  Aligned_cols=92  Identities=29%  Similarity=0.494  Sum_probs=85.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|..+..++.|.|+|+.++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~   91 (113)
T 2cpe_A           12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ   91 (113)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence            34679999999999999999999999999998777777778999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|+..
T Consensus        92 g~~l~V~~a~~~  103 (113)
T 2cpe_A           92 GSKLKVSLARKK  103 (113)
T ss_dssp             TEECEEECSSCC
T ss_pred             CCEEEEEECCCC
Confidence            999999999843

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.62  E-value=1.2e-15  Score=136.61  Aligned_cols=83  Identities=27%  Similarity=0.424  Sum_probs=72.7

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC-----CCCCcEEEEEecCHHHHHHHHHHhCCc
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD-----KHPEGVAQIFFKEPEAADACRELLNGR  706 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~-----~~~~G~afV~F~~~e~A~~Ai~~lnGr  706 (773)
                      .++++|+|+||+++.++.+      +++++|+++|++||.|.+|.|+.     +.++|+|||+|.++++|.+|+..|||+
T Consensus         6 ~~s~~l~l~Nm~~~~~l~d------d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~   79 (105)
T 2pe8_A            6 CPTKVVLLRNMVGAGEVDE------DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR   79 (105)
T ss_dssp             SCCSEEEEESSSCSCCC---------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCChHHhhH------HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence            4579999999998876643      35799999999999999998864     357899999999999999999999999


Q ss_pred             eeCCeEEEEEEecC
Q psy2160         707 WFGQRQITAETWDG  720 (773)
Q Consensus       707 ~f~Gr~l~v~~~dg  720 (773)
                      +|+||.|.|.|+++
T Consensus        80 ~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           80 YFGGRVVKACFYNL   93 (105)
T ss_dssp             EETTEECEEEECCH
T ss_pred             EECCcEEEEEEcCH
Confidence            99999999999875

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.62  E-value=1.3e-15  Score=131.87  Aligned_cols=80  Identities=31%  Similarity=0.481  Sum_probs=76.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|+ .||+..|.|+
T Consensus         5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~   75 (89)
T 3ucg_A            5 DARSIYVGNVDYGATAEELEAHFHGCGSVNR--------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR   75 (89)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHGGGCCEEE--------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred             cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence            4689999999999999999999999999998        999999888999999999999999999999 8999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|+.
T Consensus        76 ~l~V~~a~~   84 (89)
T 3ucg_A           76 QIKVIPKRT   84 (89)
T ss_dssp             ECEEEETTT
T ss_pred             EEEEEEccC
Confidence            999998874

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.62  E-value=1.2e-15  Score=134.63  Aligned_cols=82  Identities=23%  Similarity=0.321  Sum_probs=77.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC---CCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~---tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|.++..   ||.++|||||+|.+.++|..||..||+..|
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~   75 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV   75 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence            6799999999999999999999999999998        99999876   679999999999999999999999999999


Q ss_pred             cCeEEEEEeeccc
Q psy2160         291 RGKKIKVERAKFT  303 (773)
Q Consensus       291 ~g~~I~V~~A~~~  303 (773)
                      .|++|+|.+|...
T Consensus        76 ~g~~l~V~~a~~~   88 (98)
T 2cpf_A           76 DGHKLEVRISERA   88 (98)
T ss_dssp             TTEECEEECSSCS
T ss_pred             CCeEEEEEEccCC
Confidence            9999999998743

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.62  E-value=2e-15  Score=133.51  Aligned_cols=84  Identities=21%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~   76 (99)
T 1whw_A            5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS--------ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ   76 (99)
T ss_dssp             CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34678999999999999999999999999998        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+|...
T Consensus        77 g~~l~V~~a~~~   88 (99)
T 1whw_A           77 GRMLHVLPSTIK   88 (99)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CcEEEEEEcCCC
Confidence            999999999854

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=137.33  Aligned_cols=82  Identities=26%  Similarity=0.445  Sum_probs=78.2

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      +..++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..||+.|||..|.|
T Consensus        24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g   95 (108)
T 2jrs_A           24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG   95 (108)
T ss_dssp             SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE--------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            37799999999999999999999999999998        9999998889999999999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        96 ~~l~V~~a~~  105 (108)
T 2jrs_A           96 RPMKVGHVTE  105 (108)
T ss_dssp             SCCEEECSCS
T ss_pred             EEEEEEEccc
Confidence            9999998863

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=133.26  Aligned_cols=80  Identities=30%  Similarity=0.442  Sum_probs=76.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+.+. +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   86 (100)
T 2do4_A           16 EKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN   86 (100)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6799999999999999999999999999998        9999999 599999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        87 ~l~v~~a~~   95 (100)
T 2do4_A           87 IIKVAISNS   95 (100)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999874

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.62  E-value=1.5e-15  Score=133.63  Aligned_cols=80  Identities=28%  Similarity=0.461  Sum_probs=77.2

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|++||.|.        +|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   73 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI--------NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF   73 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            58999999999999999999999999999        7999999988999999999999999999999999999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |+|.+|..
T Consensus        74 l~V~~a~~   81 (96)
T 2x1f_A           74 LKCGYSSN   81 (96)
T ss_dssp             CEEEECSC
T ss_pred             EEEEEcCC
Confidence            99999984

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.62  E-value=1.6e-15  Score=134.95  Aligned_cols=82  Identities=21%  Similarity=0.418  Sum_probs=78.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   82 (102)
T 1x5s_A           11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR   82 (102)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            7799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        83 ~l~v~~a~~~   92 (102)
T 1x5s_A           83 QIRVDQAGKS   92 (102)
T ss_dssp             CCEEEEEECC
T ss_pred             EEEEEECCCC
Confidence            9999998853

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=133.38  Aligned_cols=82  Identities=30%  Similarity=0.494  Sum_probs=77.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   84 (94)
T 2e5h_A           13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV--------KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF   84 (94)
T ss_dssp             CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEE--------EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence            34578999999999999999999999999999        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|+|.+|+
T Consensus        85 g~~l~v~~ak   94 (94)
T 2e5h_A           85 GRVIKASIAI   94 (94)
T ss_dssp             TEEEEEEECC
T ss_pred             CcEEEEEecC
Confidence            9999999985

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.61  E-value=3.4e-15  Score=135.89  Aligned_cols=82  Identities=20%  Similarity=0.327  Sum_probs=78.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|++++.+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   85 (115)
T 2dgo_A           14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR   85 (115)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            7799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        86 ~l~V~~a~~~   95 (115)
T 2dgo_A           86 QIRTNWATRK   95 (115)
T ss_dssp             ECEEEESSCC
T ss_pred             EEEEEEccCC
Confidence            9999998743

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.3e-15  Score=135.83  Aligned_cols=82  Identities=24%  Similarity=0.352  Sum_probs=78.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   85 (103)
T 2cq0_A           14 DNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL   85 (103)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence            6799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        86 ~l~v~~a~~~   95 (103)
T 2cq0_A           86 ILNVEWAKPS   95 (103)
T ss_dssp             ECEEEESSCC
T ss_pred             EEEEEECCCC
Confidence            9999998743

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.9e-15  Score=132.49  Aligned_cols=83  Identities=24%  Similarity=0.418  Sum_probs=79.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   74 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKID--------NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG   74 (95)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence            4578999999999999999999999999999        79999999899999999999999999999999999999999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      ++|+|.+|...
T Consensus        75 ~~l~V~~a~~~   85 (95)
T 2dnz_A           75 RPMRVGHVTER   85 (95)
T ss_dssp             SCCEEEESSCC
T ss_pred             cEEEEEEcccc
Confidence            99999999843

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.5e-15  Score=136.08  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=78.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   93 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ   93 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence            6799999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        94 ~l~V~~a~~  102 (106)
T 1p27_B           94 PISVDWCFV  102 (106)
T ss_dssp             BCEEEESEE
T ss_pred             EEEEEeecC
Confidence            999999874

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.3e-15  Score=133.14  Aligned_cols=80  Identities=29%  Similarity=0.460  Sum_probs=77.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..||+ ||+..|.|+
T Consensus         9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~   79 (99)
T 2dgs_A            9 KSNKIFVGGIPHNCGETELREYFKKFGVVTE--------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK   79 (99)
T ss_dssp             SCCEEEEESCCSSCCHHHHHHHHSSSSCEEE--------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence            7799999999999999999999999999998        9999999889999999999999999999999 999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        80 ~l~V~~a~~   88 (99)
T 2dgs_A           80 KVEVKRAEP   88 (99)
T ss_dssp             BCEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999874

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.61  E-value=1.9e-15  Score=132.46  Aligned_cols=79  Identities=24%  Similarity=0.402  Sum_probs=76.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++. |.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   85 (95)
T 2ywk_A           15 ADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR   85 (95)
T ss_dssp             GGGEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence            7799999999999999999999999999998        99999998 99999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|+
T Consensus        86 ~l~V~~a~   93 (95)
T 2ywk_A           86 PINVSGPS   93 (95)
T ss_dssp             ECEEECCC
T ss_pred             EEEEEEcC
Confidence            99998875

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.5e-15  Score=133.05  Aligned_cols=82  Identities=22%  Similarity=0.328  Sum_probs=78.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   83 (95)
T 2cqc_A           12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD   83 (95)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEE--------EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCee--------EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34578999999999999999999999999998        7999999998999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|+|.+|+
T Consensus        84 g~~l~v~~a~   93 (95)
T 2cqc_A           84 GRRIRVSGPS   93 (95)
T ss_dssp             TEEEEEECCS
T ss_pred             CEEEEEEecC
Confidence            9999999987

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.9e-15  Score=132.81  Aligned_cols=83  Identities=19%  Similarity=0.375  Sum_probs=78.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEE-EEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i-~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      .+.++|||+|||.++|+++|+++|+.||.|.        .| +|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~   74 (96)
T 1x5t_A            3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVIL--------QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC   74 (96)
T ss_dssp             SCCCEEEEECCCTTCCHHHHHHHHHTTSCBS--------SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            3578999999999999999999999999998        68 99999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+|...
T Consensus        75 g~~l~v~~a~~~   86 (96)
T 1x5t_A           75 NRPITVSYAFKK   86 (96)
T ss_dssp             TEECEEEESCCC
T ss_pred             CEEEEEEEeccc
Confidence            999999999843

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=9.1e-16  Score=136.98  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=75.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        |+|+++.. |.++|||||+|.+.++|..||. +++..|.|+
T Consensus        10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr   79 (103)
T 1s79_A           10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET   79 (103)
T ss_dssp             GGGCEEEECCCTTCCHHHHHHHHHTSSCEEE--------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcCCEEE--------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence            6799999999999999999999999999998        99999998 9999999999999999999999 899999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|.|.++.
T Consensus        80 ~l~V~~~~   87 (103)
T 1s79_A           80 DLLILFKD   87 (103)
T ss_dssp             TCEEEEHH
T ss_pred             EEEEEEch
Confidence            99998765

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.61  E-value=1.2e-15  Score=133.87  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=75.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        +.++.+..+|+++|||||+|.+.++|.+||+.||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr   85 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR   85 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCTT--------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence            5699999999999999999999999999998        88888888899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.++.
T Consensus        86 ~l~v~~a~   93 (95)
T 2ek1_A           86 KVKLSGPS   93 (95)
T ss_dssp             ECEEECCC
T ss_pred             EEEEEecc
Confidence            99998875

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.61  E-value=2.3e-15  Score=132.83  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=76.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        ++++.+..+|+++|||||+|.+.++|.+||+.||+..|.|+
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~   85 (98)
T 2cqp_A           14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR   85 (98)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence            6799999999999999999999999999997        78888888899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|+++.
T Consensus        86 ~l~V~~a~   93 (98)
T 2cqp_A           86 KVKLVLGS   93 (98)
T ss_dssp             ECEEEESS
T ss_pred             EEEEEEcC
Confidence            99999876

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.61  E-value=1.9e-15  Score=135.12  Aligned_cols=82  Identities=24%  Similarity=0.432  Sum_probs=78.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   85 (105)
T 1x5u_A           14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK   85 (105)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            7799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        86 ~l~v~~a~~~   95 (105)
T 1x5u_A           86 PIRVNKASAH   95 (105)
T ss_dssp             BCEEEETTTT
T ss_pred             EEEEEECCCC
Confidence            9999998743

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.61  E-value=1.8e-15  Score=145.50  Aligned_cols=80  Identities=25%  Similarity=0.369  Sum_probs=75.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcC--cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G--~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ..++|||+|||+++|+++|+++|+.||  .|..        |+|++|+.||+++|||||+|.+.++|..||..|||..|.
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~  125 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE--------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN  125 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            679999999999999999999999999  8888        999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |++|+|.+|.
T Consensus       126 Gr~l~V~~a~  135 (156)
T 3n9u_C          126 GEKVDVRPAT  135 (156)
T ss_dssp             TEECEEEECC
T ss_pred             CeEeEEEEcC
Confidence            9999999886

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=133.90  Aligned_cols=81  Identities=12%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCccc-ccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVM-KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~-~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||.++|+++|+++|++||.|. .        |+|++++.||.++|||||+|.+.++|..||+.||+..|.|
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   79 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMGETVMS--------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG   79 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE--------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhCCcceE--------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence            679999999999999999999999999999 7        9999999889999999999999999999999999999999


Q ss_pred             eE----EEEEeecc
Q psy2160         293 KK----IKVERAKF  302 (773)
Q Consensus       293 ~~----I~V~~A~~  302 (773)
                      +.    |+|.+|..
T Consensus        80 ~~~~~~l~v~~a~~   93 (99)
T 2div_A           80 ATPAKRFKLNYATY   93 (99)
T ss_dssp             CSSCEECCEEETTC
T ss_pred             CCcceeEEEeecCC
Confidence            99    99999874

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.60  E-value=4.3e-16  Score=138.38  Aligned_cols=80  Identities=14%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             CCCEEEEcCCCC------CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         499 ENTKVYVSNLPL------DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       499 ~~~~l~V~nLp~------~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ..++|||+|||.      ++++++|+++|++||.|.        +|+|++++.||+++|||||+|.+.++|.+||+.|||
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~--------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng   76 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV--------NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG   76 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence            468999999999      999999999999999999        899999999999999999999999999999999999


Q ss_pred             ceecC-eEEEEEEcc
Q psy2160         573 YEIRG-KKIKVERAK  586 (773)
Q Consensus       573 ~~i~g-~~i~V~~a~  586 (773)
                      ..|.| +.|+|.+|.
T Consensus        77 ~~~~g~r~l~V~~a~   91 (100)
T 3ns6_A           77 KRLDLKHRLFLYTMK   91 (100)
T ss_dssp             CBSSSSCBCEEEESH
T ss_pred             cccCCCeEEEEEECc
Confidence            99999 999999997

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.60  E-value=2.6e-15  Score=134.53  Aligned_cols=82  Identities=23%  Similarity=0.410  Sum_probs=78.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee---
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI---  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l---  290 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.||.++|||||+|.+.++|..||+.||+..+   
T Consensus        12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~   83 (106)
T 2dgp_A           12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG   83 (106)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence            7799999999999999999999999999998        99999999999999999999999999999999999987   


Q ss_pred             cCeEEEEEeeccc
Q psy2160         291 RGKKIKVERAKFT  303 (773)
Q Consensus       291 ~g~~I~V~~A~~~  303 (773)
                      .|++|+|.+|...
T Consensus        84 ~g~~l~v~~a~~~   96 (106)
T 2dgp_A           84 MNRPIQVKPADSE   96 (106)
T ss_dssp             CSSCCEEEECCCC
T ss_pred             CCceEEEEECCcc
Confidence            8899999998753

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.60  E-value=2e-15  Score=138.16  Aligned_cols=80  Identities=21%  Similarity=0.431  Sum_probs=76.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.+|+++|||||+|.+.++|..||+.|||..|.|+
T Consensus        39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~  110 (118)
T 2khc_A           39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK  110 (118)
T ss_dssp             CSEEEEEECSCTTCCHHHHHHHTTTSCEEEE--------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            7799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|++++
T Consensus       111 ~l~V~~ak  118 (118)
T 2khc_A          111 RLKVQLKK  118 (118)
T ss_dssp             ECCEEEC-
T ss_pred             EEEEEecC
Confidence            99998864

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.60  E-value=8.3e-16  Score=129.23  Aligned_cols=76  Identities=28%  Similarity=0.383  Sum_probs=72.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||.++|+++|+++|++||.|..        |++++++.+|.++|||||+|.+.++|..|++.++ ..|.|++|
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l   71 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI   71 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence            58999999999999999999999999998        9999999889999999999999999999999998 99999999


Q ss_pred             EEEee
Q psy2160         296 KVERA  300 (773)
Q Consensus       296 ~V~~A  300 (773)
                      +|.+|
T Consensus        72 ~v~~a   76 (77)
T 1uaw_A           72 DPKVA   76 (77)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99876

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.60  E-value=7.1e-16  Score=129.04  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=71.8

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||.++|+++|+++|++||.|..        |++++++.+|.++|||||+|.+.++|..|++ ||+..|.|++|+
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~   71 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE   71 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence            5899999999999999999999999998        9999999889999999999999999999998 999999999999


Q ss_pred             EEee
Q psy2160         297 VERA  300 (773)
Q Consensus       297 V~~A  300 (773)
                      |.+|
T Consensus        72 v~~A   75 (75)
T 2mss_A           72 CKKA   75 (75)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9765

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.60  E-value=5.5e-16  Score=134.81  Aligned_cols=79  Identities=23%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcC--cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G--~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      .+|||+|||.++|+++|+++|+.||  .|.        +|+|+.|+.+|+++|||||+|.+.++|.+|++.|||..|.|+
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~--------~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr   73 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL--------EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ   73 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCC--------CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceE--------EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence            4799999999999999999999999  888        799999998999999999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      .|+|.++..
T Consensus        74 ~i~V~~~~~   82 (90)
T 3p5t_L           74 NPVVTPSNK   82 (90)
T ss_dssp             CCEECCC--
T ss_pred             EEEEEECCC
Confidence            999999884

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.5e-15  Score=135.32  Aligned_cols=81  Identities=23%  Similarity=0.398  Sum_probs=78.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++..||.++|||||+|.+.++|..||..||+..|.|+
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   83 (103)
T 2dnm_A           12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR   83 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            6799999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        84 ~l~V~~a~~   92 (103)
T 2dnm_A           84 ELRVQVARY   92 (103)
T ss_dssp             CCEEEECSS
T ss_pred             EEEEEECCc
Confidence            999999874

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=130.90  Aligned_cols=81  Identities=22%  Similarity=0.360  Sum_probs=76.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCC-cceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-FKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~-~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..++. ++|||||+|.+.++|..|+..|||..|.|
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   74 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG   74 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence            5689999999999999999999999999998        99999987666 89999999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|+++..
T Consensus        75 ~~l~v~~a~~   84 (88)
T 4a8x_A           75 QEITATAVLA   84 (88)
T ss_dssp             EECEEEEECC
T ss_pred             eEEEEEECCC
Confidence            9999998863

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=136.44  Aligned_cols=81  Identities=26%  Similarity=0.366  Sum_probs=77.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+.+. +|.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~   76 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK   76 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSSCCSE--------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6799999999999999999999999999998        9999998 699999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        77 ~l~V~~a~~~   86 (116)
T 2fy1_A           77 AIKVEQAKKP   86 (116)
T ss_dssp             BCEEEECCCS
T ss_pred             EEEEEECCCC
Confidence            9999998743

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.59  E-value=5.2e-15  Score=132.30  Aligned_cols=80  Identities=19%  Similarity=0.295  Sum_probs=76.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++. |.++|||||+|.+.++|..||+.||+..+.| 
T Consensus        14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg   84 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE--------CTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG   84 (105)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECSS-SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence            6799999999999999999999999999998        99999985 9999999999999999999999999999988 


Q ss_pred             --eEEEEEeecc
Q psy2160         293 --KKIKVERAKF  302 (773)
Q Consensus       293 --~~I~V~~A~~  302 (773)
                        ++|+|.+|..
T Consensus        85 ~~~~l~V~~a~~   96 (105)
T 2dnh_A           85 ASSSLVVKFADT   96 (105)
T ss_dssp             CSSCCEEEESCS
T ss_pred             CCccEEEEECcc
Confidence              9999999874

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=3.2e-15  Score=132.95  Aligned_cols=84  Identities=21%  Similarity=0.286  Sum_probs=79.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus         9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   80 (102)
T 2cqb_A            9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF   80 (102)
T ss_dssp             CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCC--------CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34678999999999999999999999999999        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+|...
T Consensus        81 g~~l~V~~a~~~   92 (102)
T 2cqb_A           81 GRTIRVNLAKPM   92 (102)
T ss_dssp             TEEEEEEECCCC
T ss_pred             CcEEEEEeCCCC
Confidence            999999999843

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.59  E-value=3.8e-15  Score=133.72  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||..+|+++|+++|++||.|..        |+|+++. +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   98 (107)
T 3ulh_A           28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR   98 (107)
T ss_dssp             CSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            7899999999999999999999999999998        9999999 699999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|++|.
T Consensus        99 ~l~V~~a~  106 (107)
T 3ulh_A           99 PMNIQLVT  106 (107)
T ss_dssp             ECEEEEEC
T ss_pred             EEEEEEeC
Confidence            99999875

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.59  E-value=4.6e-15  Score=128.30  Aligned_cols=79  Identities=32%  Similarity=0.470  Sum_probs=75.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        .|+++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~   76 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVN--------RVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ   76 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEE--------EEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence            47999999999999999999999999999        8999999888999999999999999999999 99999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |+|.+++.
T Consensus        77 l~V~~a~~   84 (89)
T 3ucg_A           77 IKVIPKRT   84 (89)
T ss_dssp             CEEEETTT
T ss_pred             EEEEEccC
Confidence            99999984

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.59  E-value=6.2e-15  Score=134.18  Aligned_cols=84  Identities=19%  Similarity=0.328  Sum_probs=79.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+..+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~   83 (115)
T 2dgo_A           12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS--------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG   83 (115)
T ss_dssp             STTCEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            45679999999999999999999999999999        8999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus        84 g~~l~V~~a~~~   95 (115)
T 2dgo_A           84 GRQIRTNWATRK   95 (115)
T ss_dssp             TEECEEEESSCC
T ss_pred             CEEEEEEEccCC
Confidence            999999999854

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.59  E-value=3.1e-15  Score=134.99  Aligned_cols=81  Identities=27%  Similarity=0.312  Sum_probs=78.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+.+..+|.++|||||+|.+.++|..||..|||..|.|+
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   96 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ   96 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            7799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        97 ~l~V~~a~~  105 (110)
T 1oo0_B           97 TIQVDWCFV  105 (110)
T ss_dssp             ECEEEESEE
T ss_pred             EEEEEEccc
Confidence            999999874

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.59  E-value=3.3e-15  Score=131.81  Aligned_cols=83  Identities=22%  Similarity=0.313  Sum_probs=77.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC---CCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~---tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|+.++.   ||.++|||||+|.+.++|..|+..|||..
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~   74 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIK--------SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT   74 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence            3578999999999999999999999999998        799998876   56899999999999999999999999999


Q ss_pred             ecCeEEEEEEcccc
Q psy2160         575 IRGKKIKVERAKFT  588 (773)
Q Consensus       575 i~g~~i~V~~a~~~  588 (773)
                      |.|++|+|.+|...
T Consensus        75 ~~g~~l~V~~a~~~   88 (98)
T 2cpf_A           75 VDGHKLEVRISERA   88 (98)
T ss_dssp             ETTEECEEECSSCS
T ss_pred             eCCeEEEEEEccCC
Confidence            99999999999843

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5e-15  Score=131.97  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=76.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++  +|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   83 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITS--------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK   83 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTSCEEE--------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            7899999999999999999999999999998        999998  599999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        84 ~l~V~~a~~~   93 (103)
T 2d9p_A           84 PLYVALAQRK   93 (103)
T ss_dssp             BCEEEECSSC
T ss_pred             EEEEEEeccc
Confidence            9999998753

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.59  E-value=6e-16  Score=145.29  Aligned_cols=82  Identities=26%  Similarity=0.436  Sum_probs=78.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|+.||.|.        .|+|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus        46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~  117 (135)
T 2lea_A           46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--------DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR  117 (135)
T ss_dssp             GCCCEEEECCCSSCHHHHHHHHHGGGSCCS--------EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            468999999999999999999999999998        799999988899999999999999999999999999999999


Q ss_pred             EEEEEEcccc
Q psy2160         579 KIKVERAKFT  588 (773)
Q Consensus       579 ~i~V~~a~~~  588 (773)
                      +|+|.+|+..
T Consensus       118 ~l~V~~a~~~  127 (135)
T 2lea_A          118 ELRVQMARYG  127 (135)
T ss_dssp             CCEEEECCCC
T ss_pred             EEEEEECCCC
Confidence            9999999843

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.59  E-value=4.7e-15  Score=127.80  Aligned_cols=80  Identities=21%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.++|..|+. +++..|.
T Consensus         8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~   78 (87)
T 3s7r_A            8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV--------DCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD   78 (87)
T ss_dssp             CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC
Confidence            45678999999999999999999999999999        89999999999999999999999999999995 5888999


Q ss_pred             CeEEEEEEc
Q psy2160         577 GKKIKVERA  585 (773)
Q Consensus       577 g~~i~V~~a  585 (773)
                      |+.|.|.+|
T Consensus        79 g~~i~v~~A   87 (87)
T 3s7r_A           79 GRVIDPKKA   87 (87)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEEeC
Confidence            999999976

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=2.7e-15  Score=133.45  Aligned_cols=84  Identities=21%  Similarity=0.421  Sum_probs=79.2

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus         9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   80 (102)
T 1x5s_A            9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS--------EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD   80 (102)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34678999999999999999999999999998        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+|+..
T Consensus        81 g~~l~v~~a~~~   92 (102)
T 1x5s_A           81 GRQIRVDQAGKS   92 (102)
T ss_dssp             SCCCEEEEEECC
T ss_pred             CeEEEEEECCCC
Confidence            999999999843

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=4.6e-15  Score=131.50  Aligned_cols=82  Identities=29%  Similarity=0.432  Sum_probs=77.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus        14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   84 (100)
T 2do4_A           14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVK--------DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK   84 (100)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34678999999999999999999999999998        79999998 7999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|+|.+|..
T Consensus        85 g~~l~v~~a~~   95 (100)
T 2do4_A           85 ENIIKVAISNS   95 (100)
T ss_dssp             SCEEEEEECCC
T ss_pred             CEEEEEEECCC
Confidence            99999999984

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.59  E-value=7.7e-15  Score=138.23  Aligned_cols=81  Identities=20%  Similarity=0.364  Sum_probs=78.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|++++.||.++|||||+|.+.++|..||..||+..|.|+
T Consensus        41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~  112 (139)
T 1u6f_A           41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK  112 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            7799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus       113 ~l~v~~a~~  121 (139)
T 1u6f_A          113 RLKVALAAS  121 (139)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEECCC
Confidence            999999874

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.59  E-value=3e-15  Score=133.44  Aligned_cols=84  Identities=26%  Similarity=0.368  Sum_probs=79.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   83 (103)
T 2cq0_A           12 ADDNATIRVTNLSEDTRETDLQELFRPFGSIS--------RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD   83 (103)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence            34679999999999999999999999999999        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus        84 g~~l~v~~a~~~   95 (103)
T 2cq0_A           84 HLILNVEWAKPS   95 (103)
T ss_dssp             TEECEEEESSCC
T ss_pred             CcEEEEEECCCC
Confidence            999999999843

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-15  Score=134.25  Aligned_cols=84  Identities=23%  Similarity=0.380  Sum_probs=79.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   81 (103)
T 2dnm_A           10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVG--------DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD   81 (103)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34679999999999999999999999999999        7999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|+..
T Consensus        82 g~~l~V~~a~~~   93 (103)
T 2dnm_A           82 GRELRVQVARYG   93 (103)
T ss_dssp             TBCCEEEECSSC
T ss_pred             CcEEEEEECCcC
Confidence            999999999843

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.59  E-value=8.1e-15  Score=130.68  Aligned_cols=79  Identities=24%  Similarity=0.396  Sum_probs=75.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++|| |..        |+|+++..||+++|||||+|.+.++|..|| .||+..|.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~   83 (103)
T 2dng_A           14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR   83 (103)
T ss_dssp             SCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence            679999999999999999999999998 777        999999999999999999999999999999 7999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        84 ~l~V~~a~~   92 (103)
T 2dng_A           84 SLRVDIAEG   92 (103)
T ss_dssp             ECEEEECCC
T ss_pred             EEEEEEecC
Confidence            999999874

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=7.6e-15  Score=133.29  Aligned_cols=81  Identities=19%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++. |.++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   84 (114)
T 2do0_A           14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR   84 (114)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence            6799999999999999999999999999998        99999986 99999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.++...
T Consensus        85 ~l~v~~a~~~   94 (114)
T 2do0_A           85 PMHVKMDERA   94 (114)
T ss_dssp             ECEEEECSCC
T ss_pred             EEEEEEcccC
Confidence            9999998743

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.58  E-value=1.6e-14  Score=133.29  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=77.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++. +|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~  104 (124)
T 2kt5_A           34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR  104 (124)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHHHTTSCCSE--------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            7799999999999999999999999999998        9999999 699999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus       105 ~l~V~~a~~  113 (124)
T 2kt5_A          105 PMDIQLVAS  113 (124)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            999999874

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.58  E-value=5.8e-15  Score=132.41  Aligned_cols=82  Identities=22%  Similarity=0.391  Sum_probs=77.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEec-CCCCCcceEEEEEecChHHHHHHHHHc-CCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSIL-DGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d-~~tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~  291 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++ ..+|.++|||||+|.+.++|..||..| |+..|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~   85 (107)
T 2cph_A           14 TTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY   85 (107)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHccCCeEE--------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence            7799999999999999999999999999998        999999 677999999999999999999999999 999999


Q ss_pred             CeEEEEEeeccc
Q psy2160         292 GKKIKVERAKFT  303 (773)
Q Consensus       292 g~~I~V~~A~~~  303 (773)
                      |++|+|.+|...
T Consensus        86 g~~l~v~~a~~~   97 (107)
T 2cph_A           86 GRRLVLEWADSE   97 (107)
T ss_dssp             SCBCEEEECCCC
T ss_pred             CCEEEEEeCCCC
Confidence            999999998743

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=3.1e-15  Score=133.75  Aligned_cols=84  Identities=24%  Similarity=0.429  Sum_probs=79.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~   83 (105)
T 1x5u_A           12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVV--------NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY   83 (105)
T ss_dssp             CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence            45679999999999999999999999999999        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+|...
T Consensus        84 g~~l~v~~a~~~   95 (105)
T 1x5u_A           84 GKPIRVNKASAH   95 (105)
T ss_dssp             SCBCEEEETTTT
T ss_pred             CeEEEEEECCCC
Confidence            999999999843

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.3e-15  Score=134.29  Aligned_cols=80  Identities=29%  Similarity=0.527  Sum_probs=77.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   78 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR   78 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence            6799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|.
T Consensus        79 ~l~v~~a~   86 (104)
T 1p1t_A           79 ALRVDNAA   86 (104)
T ss_dssp             CBEEEETT
T ss_pred             EEEEEeCC
Confidence            99999876

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.8e-15  Score=134.28  Aligned_cols=82  Identities=23%  Similarity=0.330  Sum_probs=78.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus        21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   92 (106)
T 1p27_B           21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--------NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG   92 (106)
T ss_dssp             TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence            4568999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.+|..
T Consensus        93 ~~l~V~~a~~  102 (106)
T 1p27_B           93 QPISVDWCFV  102 (106)
T ss_dssp             SBCEEEESEE
T ss_pred             cEEEEEeecC
Confidence            9999999984

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.58  E-value=6.4e-15  Score=134.09  Aligned_cols=84  Identities=20%  Similarity=0.388  Sum_probs=79.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+++..+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus        22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   93 (115)
T 2cpz_A           22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV--------SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG   93 (115)
T ss_dssp             CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCS--------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34568999999999999999999999999998        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+++..
T Consensus        94 g~~l~V~~a~~~  105 (115)
T 2cpz_A           94 MKRLKVQLKRSK  105 (115)
T ss_dssp             TEECEEECCCCS
T ss_pred             CEEEEEEEcCCC
Confidence            999999999843

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=5.6e-15  Score=130.66  Aligned_cols=83  Identities=27%  Similarity=0.440  Sum_probs=78.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..|++ ||+..|.
T Consensus         7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~   77 (99)
T 2dgs_A            7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVT--------EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM   77 (99)
T ss_dssp             CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEE--------EEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence            34678999999999999999999999999998        79999999889999999999999999999998 9999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus        78 g~~l~V~~a~~~   89 (99)
T 2dgs_A           78 GKKVEVKRAEPR   89 (99)
T ss_dssp             SCBCEEEECCCC
T ss_pred             CeEEEEEECCCC
Confidence            999999999843

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.58  E-value=4e-15  Score=134.42  Aligned_cols=81  Identities=27%  Similarity=0.478  Sum_probs=78.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC------C
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD------G  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln------g  287 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.||.++|||||+|.+.++|..||..||      +
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~   85 (111)
T 1x4h_A           14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG   85 (111)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence            6799999999999999999999999999998        9999999999999999999999999999999999      9


Q ss_pred             ceecCeEEEEEeecc
Q psy2160         288 YEIRGKKIKVERAKF  302 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~  302 (773)
                      ..|.|++|+|.+|..
T Consensus        86 ~~~~g~~l~v~~a~~  100 (111)
T 1x4h_A           86 LKLDGRQLKVDLAVT  100 (111)
T ss_dssp             EESSSCEEEEECCCC
T ss_pred             cEEcCEEEEEEECCC
Confidence            999999999999874

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.58  E-value=4.9e-15  Score=129.89  Aligned_cols=80  Identities=24%  Similarity=0.411  Sum_probs=76.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|+.++. |.++|||||+|.+.++|.+|+..|||..|.|
T Consensus        14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--------~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   84 (95)
T 2ywk_A           14 EADRTVFVGNLEARVREEILYELFLQAGPLT--------KVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG   84 (95)
T ss_dssp             TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            4568999999999999999999999999999        799999987 8999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      ++|+|.+|+
T Consensus        85 ~~l~V~~a~   93 (95)
T 2ywk_A           85 RPINVSGPS   93 (95)
T ss_dssp             EECEEECCC
T ss_pred             CEEEEEEcC
Confidence            999999986

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.58  E-value=3e-15  Score=132.97  Aligned_cols=75  Identities=24%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      |+|||+|||.++|+++|+++|++||.|..        |+|+++     ++|||||+|.+.++|..|+..||+..|.|++|
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   67 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRT--------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV   67 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSE--------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence            68999999999999999999999999998        999876     68999999999999999999999999999999


Q ss_pred             EEEeeccc
Q psy2160         296 KVERAKFT  303 (773)
Q Consensus       296 ~V~~A~~~  303 (773)
                      +|.+|...
T Consensus        68 ~V~~a~~~   75 (101)
T 2hvz_A           68 RVELSTGM   75 (101)
T ss_dssp             EEEESSSC
T ss_pred             EEEEccCC
Confidence            99998754

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=5.5e-15  Score=134.32  Aligned_cols=80  Identities=21%  Similarity=0.365  Sum_probs=76.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|+.+..||.++|||||+|.+.++|..|| .||+..|.|+
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~   94 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV   94 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeE--------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence            6799999999999999999999999999998        999999999999999999999999999999 8999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        95 ~l~V~~a~~  103 (114)
T 2cq4_A           95 PIIVQASQA  103 (114)
T ss_dssp             EEEEEEHHH
T ss_pred             EEEEEecCC
Confidence            999998763

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.58  E-value=2.5e-15  Score=135.41  Aligned_cols=82  Identities=26%  Similarity=0.460  Sum_probs=78.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus        23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~   94 (108)
T 2jrs_A           23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIE--------SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA   94 (108)
T ss_dssp             CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEE--------EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            44678999999999999999999999999998        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|+|.+|+
T Consensus        95 g~~l~V~~a~  104 (108)
T 2jrs_A           95 GRPMKVGHVT  104 (108)
T ss_dssp             SSCCEEECSC
T ss_pred             CEEEEEEEcc
Confidence            9999999987

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.58  E-value=2.3e-15  Score=134.37  Aligned_cols=79  Identities=22%  Similarity=0.344  Sum_probs=75.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|++++. |.++|||||+|.+.++|..||. +||..|.|
T Consensus         9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~--------~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g   78 (103)
T 1s79_A            9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE   78 (103)
T ss_dssp             SGGGCEEEECCCTTCCHHHHHHHHHTSSCEE--------EEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCEE--------EEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence            3468999999999999999999999999999        899999988 9999999999999999999998 99999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|.|.++.
T Consensus        79 r~l~V~~~~   87 (103)
T 1s79_A           79 TDLLILFKD   87 (103)
T ss_dssp             TTCEEEEHH
T ss_pred             EEEEEEEch
Confidence            999999887

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.57  E-value=4.1e-15  Score=128.30  Aligned_cols=80  Identities=23%  Similarity=0.368  Sum_probs=75.6

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCC-CcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-FKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~-~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        .|+|+.+..++. ++|||||+|.+.++|..|+..|||..|.|
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   74 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK--------MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG   74 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence            468999999999999999999999999999        799999987655 89999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|+|.+|.
T Consensus        75 ~~l~v~~a~   83 (88)
T 4a8x_A           75 QEITATAVL   83 (88)
T ss_dssp             EECEEEEEC
T ss_pred             eEEEEEECC
Confidence            999999987

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.57  E-value=4.5e-15  Score=133.93  Aligned_cols=83  Identities=27%  Similarity=0.303  Sum_probs=78.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus        23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~   94 (110)
T 1oo0_B           23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM   94 (110)
T ss_dssp             BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34568999999999999999999999999998        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus        95 g~~l~V~~a~~  105 (110)
T 1oo0_B           95 GQTIQVDWCFV  105 (110)
T ss_dssp             TEECEEEESEE
T ss_pred             CcEEEEEEccc
Confidence            99999999984

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=6.3e-15  Score=134.39  Aligned_cols=80  Identities=23%  Similarity=0.281  Sum_probs=76.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.||.++|||||+|.+.++|..||..|++ .|.|+
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~   86 (116)
T 2cqd_A           16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR   86 (116)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence            7799999999999999999999999999998        99999998899999999999999999999999998 89999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        87 ~l~V~~a~~   95 (116)
T 2cqd_A           87 KANVNLAYL   95 (116)
T ss_dssp             ECEEEESTT
T ss_pred             EEEEEEccc
Confidence            999999874

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.57  E-value=7.3e-15  Score=131.81  Aligned_cols=81  Identities=19%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||..+|+++|+++|+.||.|.        .|+|+.+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus        26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   96 (107)
T 3ulh_A           26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD   96 (107)
T ss_dssp             CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            45679999999999999999999999999998        79999998 7999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|+|.+|.
T Consensus        97 g~~l~V~~a~  106 (107)
T 3ulh_A           97 GRPMNIQLVT  106 (107)
T ss_dssp             TEECEEEEEC
T ss_pred             CcEEEEEEeC
Confidence            9999999985

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.57  E-value=6e-15  Score=141.90  Aligned_cols=80  Identities=25%  Similarity=0.371  Sum_probs=76.1

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcC--cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..++|||+|||.++|+++|+++|+.||  .|.        .|+|+.|+.+|+++|||||+|.+.++|..||..|||..|.
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~--------~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~  125 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV--------ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN  125 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            468999999999999999999999999  888        7999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|.|.+|.
T Consensus       126 Gr~l~V~~a~  135 (156)
T 3n9u_C          126 GEKVDVRPAT  135 (156)
T ss_dssp             TEECEEEECC
T ss_pred             CeEeEEEEcC
Confidence            9999999997

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.57  E-value=1.9e-15  Score=126.43  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||.++|+++|+++|++||.|.        .|+++.++.+|.++|||||+|.+.++|..|++ |||..|.|++|.
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~   71 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVD--------DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE   71 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCS--------EECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence            489999999999999999999999998        79999999889999999999999999999997 999999999999


Q ss_pred             EEEc
Q psy2160         582 VERA  585 (773)
Q Consensus       582 V~~a  585 (773)
                      |.+|
T Consensus        72 v~~A   75 (75)
T 2mss_A           72 CKKA   75 (75)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9875

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=7.3e-16  Score=132.29  Aligned_cols=80  Identities=19%  Similarity=0.290  Sum_probs=75.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   75 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ   75 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence            6799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      .|+|.++.
T Consensus        76 ~~~~~~~~   83 (85)
T 1x4e_A           76 MAKQSGPS   83 (85)
T ss_dssp             SCCSSCCC
T ss_pred             EEeecCCC
Confidence            99886543

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=125.95  Aligned_cols=78  Identities=19%  Similarity=0.286  Sum_probs=73.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.| .|..        |+|+++ .+|+++|||||+|.+.++|..||. ||+..|.|+
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr   77 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA--------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR   77 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTS-CCSE--------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhC-CceE--------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence            67999999999999999999999999 7887        999999 559999999999999999999999 999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.+|..
T Consensus        78 ~i~v~~a~~   86 (91)
T 2dgw_A           78 YIEVFREKS   86 (91)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEECCc
Confidence            999999874

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=1.3e-14  Score=129.19  Aligned_cols=80  Identities=21%  Similarity=0.388  Sum_probs=75.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++.. + ++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~-~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   83 (103)
T 2cq3_A           14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGR   83 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCTT-T-TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCC-C-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            7799999999999999999999999999998        99999875 4 899999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        84 ~l~v~~a~~~   93 (103)
T 2cq3_A           84 KIEVNNATAR   93 (103)
T ss_dssp             ECEEEECCSS
T ss_pred             EEEEEEcccC
Confidence            9999998753

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.57  E-value=3.7e-15  Score=136.33  Aligned_cols=82  Identities=21%  Similarity=0.421  Sum_probs=77.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus        37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~  108 (118)
T 2khc_A           37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVI--------SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG  108 (118)
T ss_dssp             CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEE--------EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            45678999999999999999999999999999        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|+|++++
T Consensus       109 g~~l~V~~ak  118 (118)
T 2khc_A          109 TKRLKVQLKK  118 (118)
T ss_dssp             TEECCEEEC-
T ss_pred             CEEEEEEecC
Confidence            9999999874

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=6.2e-15  Score=131.67  Aligned_cols=80  Identities=24%  Similarity=0.392  Sum_probs=76.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCC-CCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~t-g~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||.++|+++|+++|+.|| |..        |+|+++..| |.++|||||+|.+.++|..|| .||+..|.|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g   83 (104)
T 1wi8_A           14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN   83 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEE--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE--------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence            679999999999999999999999999 887        999999987 999999999999999999999 899999999


Q ss_pred             eEEEEEeeccc
Q psy2160         293 KKIKVERAKFT  303 (773)
Q Consensus       293 ~~I~V~~A~~~  303 (773)
                      ++|+|.+|...
T Consensus        84 ~~l~V~~a~~~   94 (104)
T 1wi8_A           84 KRIRVDVADQA   94 (104)
T ss_dssp             EECEEEECCCC
T ss_pred             cEEEEEEccCC
Confidence            99999998753

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.57  E-value=9.7e-15  Score=131.88  Aligned_cols=84  Identities=26%  Similarity=0.461  Sum_probs=79.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC-----
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD-----  571 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln-----  571 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|++++.+|.++|||||+|.+.++|..||..||     
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~   83 (111)
T 1x4h_A           12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK--------YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEG   83 (111)
T ss_dssp             CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcccccc
Confidence            34678999999999999999999999999998        89999999999999999999999999999999999     


Q ss_pred             -CceecCeEEEEEEcccc
Q psy2160         572 -GYEIRGKKIKVERAKFT  588 (773)
Q Consensus       572 -g~~i~g~~i~V~~a~~~  588 (773)
                       |..|.|+.|+|.+|...
T Consensus        84 ~~~~~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           84 GGLKLDGRQLKVDLAVTR  101 (111)
T ss_dssp             CCEESSSCEEEEECCCCC
T ss_pred             CCcEEcCEEEEEEECCCC
Confidence             99999999999999843

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.57  E-value=4.4e-15  Score=135.12  Aligned_cols=78  Identities=12%  Similarity=0.248  Sum_probs=74.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcc-cccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLV-MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I-~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||+++|+++|+++|+.||.| ..        |+|+++. +|+++|||||+|.+.++|..||+. |+..|.|
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g   83 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENA--------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG   83 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT--------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence            67999999999999999999999999999 77        9999999 699999999999999999999996 9999999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      ++|.|.+|.
T Consensus        84 r~i~v~~a~   92 (114)
T 2cpy_A           84 REAFVHVVT   92 (114)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEECC
Confidence            999999886

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.57  E-value=1.4e-15  Score=132.08  Aligned_cols=78  Identities=31%  Similarity=0.421  Sum_probs=74.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||.++|+++|+++|++||.|..        |+|.+++.||.++|||||+|.+.+ |..|+..|||..|.|++|
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l   72 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFN--------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI   72 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSE--------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence            68999999999999999999999999998        999999989999999999999999 999999999999999999


Q ss_pred             EEEeecc
Q psy2160         296 KVERAKF  302 (773)
Q Consensus       296 ~V~~A~~  302 (773)
                      +|.+|..
T Consensus        73 ~V~~a~~   79 (90)
T 2ki2_A           73 RVTEANP   79 (90)
T ss_dssp             SEEEC--
T ss_pred             EEEEcCC
Confidence            9999874

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=5e-15  Score=132.17  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhh-cCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce-ec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-IR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~-~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~-l~  291 (773)
                      .+++|||+|||.++|+++|+++|++ ||.|..        |+|+++. +|.++|||||+|.+.++|..||+.||+.. |.
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~   78 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG--------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG   78 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE--------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence            6799999999999999999999999 999998        9999999 69999999999999999999999999999 99


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|.+|..
T Consensus        79 g~~l~v~~a~~   89 (104)
T 2dhg_A           79 SKPVRLSVAIP   89 (104)
T ss_dssp             SSCCCCCBCCC
T ss_pred             CEeEEEEEccC
Confidence            99999998864

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=4.6e-15  Score=132.70  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=76.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..||.. |+..|.|+
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~   85 (105)
T 2dh8_A           15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVD--------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR   85 (105)
T ss_dssp             SSSEECCBSCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence            7799999999999999999999999999998        99999988899999999999999999999998 99999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.+|..
T Consensus        86 ~l~V~~a~~   94 (105)
T 2dh8_A           86 NIDPKPCTP   94 (105)
T ss_dssp             EEBCCCSCC
T ss_pred             EEEEEEccC
Confidence            999988764

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.56  E-value=7.9e-15  Score=131.36  Aligned_cols=84  Identities=23%  Similarity=0.398  Sum_probs=78.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee-
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i-  575 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+..|||..+ 
T Consensus        10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~   81 (106)
T 2dgp_A           10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY--------ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL   81 (106)
T ss_dssp             CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence            34678999999999999999999999999999        799999999999999999999999999999999999998 


Q ss_pred             --cCeEEEEEEcccc
Q psy2160         576 --RGKKIKVERAKFT  588 (773)
Q Consensus       576 --~g~~i~V~~a~~~  588 (773)
                        .|++|+|.+|...
T Consensus        82 ~~~g~~l~v~~a~~~   96 (106)
T 2dgp_A           82 PGMNRPIQVKPADSE   96 (106)
T ss_dssp             TTCSSCCEEEECCCC
T ss_pred             CCCCceEEEEECCcc
Confidence              8999999999843

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=6.8e-15  Score=130.05  Aligned_cols=85  Identities=12%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|..       .|+|++++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   78 (99)
T 2div_A            6 SGMAASLWMGDLEPYMDENFISRAFATMGETVM-------SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP   78 (99)
T ss_dssp             CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCC-------EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcce-------EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence            346799999999999999999999999999862       4999999988999999999999999999999999999999


Q ss_pred             CeE----EEEEEcccc
Q psy2160         577 GKK----IKVERAKFT  588 (773)
Q Consensus       577 g~~----i~V~~a~~~  588 (773)
                      |+.    |+|.+|...
T Consensus        79 g~~~~~~l~v~~a~~~   94 (99)
T 2div_A           79 GATPAKRFKLNYATYS   94 (99)
T ss_dssp             SCSSCEECCEEETTCC
T ss_pred             CCCcceeEEEeecCCC
Confidence            998    999999843

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.56  E-value=4.3e-15  Score=131.12  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=76.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   84 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP--------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS   84 (98)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT--------TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence            4568999999999999999999999999998        57788888889999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.++..
T Consensus        85 ~~l~V~~a~~   94 (98)
T 2cqp_A           85 RKVKLVLGSG   94 (98)
T ss_dssp             EECEEEESSC
T ss_pred             eEEEEEEcCC
Confidence            9999999873

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-15  Score=134.94  Aligned_cols=79  Identities=23%  Similarity=0.393  Sum_probs=73.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecC-CCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~-~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||.++|+++|+++|+.|| |..        |+|+++. .+|+++|||||+|.+.++|..|| .|||..|.|
T Consensus        18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g   87 (100)
T 2j76_E           18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN   87 (100)
T ss_dssp             --CEEEESCCSSCCSSSHHHHHSCSSC-EEE--------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence            789999999999999999999999999 888        9999998 57999999999999999999999 799999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      +.|+|.+|..
T Consensus        88 ~~l~V~~a~~   97 (100)
T 2j76_E           88 RRIRVDVADQ   97 (100)
T ss_dssp             BCCCCEECCC
T ss_pred             eEEEEEeccC
Confidence            9999998874

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.56  E-value=7.3e-15  Score=134.54  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=74.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc---ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~---I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      ..++|||+|||+++|+++|+++|+.||.   |..        |+|+++.. |+++|||||+|.+.++|.+||+ ||+..|
T Consensus        16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~   85 (118)
T 2db1_A           16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG--------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM   85 (118)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG--------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence            6799999999999999999999999999   777        99999998 9999999999999999999999 999999


Q ss_pred             cCeEEEEEeec
Q psy2160         291 RGKKIKVERAK  301 (773)
Q Consensus       291 ~g~~I~V~~A~  301 (773)
                      .|+.|+|..|.
T Consensus        86 ~gr~i~V~~a~   96 (118)
T 2db1_A           86 GHRYIEVFKSH   96 (118)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCeEEEEEECC
Confidence            99999998875

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.56  E-value=8.1e-15  Score=127.65  Aligned_cols=79  Identities=22%  Similarity=0.460  Sum_probs=75.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|.++  +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~   76 (92)
T 2dgv_A            7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLY--------ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR   76 (92)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCEEE--------EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            7799999999999999999999999999998        999884  599999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.++..
T Consensus        77 ~l~v~~a~~   85 (92)
T 2dgv_A           77 EIDVRIDRN   85 (92)
T ss_dssp             CCCCEECSC
T ss_pred             EEEEEEcCC
Confidence            999999874

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.56  E-value=7.8e-15  Score=133.91  Aligned_cols=82  Identities=26%  Similarity=0.360  Sum_probs=77.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .|.|+.+. +|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g   75 (116)
T 2fy1_A            5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS--------EVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG   75 (116)
T ss_dssp             CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS--------EEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            4578999999999999999999999999998        79999998 79999999999999999999999999999999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      +.|.|.+|+..
T Consensus        76 ~~l~V~~a~~~   86 (116)
T 2fy1_A           76 KAIKVEQAKKP   86 (116)
T ss_dssp             SBCEEEECCCS
T ss_pred             EEEEEEECCCC
Confidence            99999999843

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.56  E-value=6.2e-15  Score=125.44  Aligned_cols=74  Identities=20%  Similarity=0.312  Sum_probs=70.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .++.|||+||++.+|+++|+++|++||+|..        ++|+.      ++|||||+|.++++|..|++.||+..+.|+
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr   71 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT   71 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhCCEEE--------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence            6789999999999999999999999999998        88864      689999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|..|.
T Consensus        72 ~I~V~~A~   79 (89)
T 2wbr_A           72 TIFAESPS   79 (89)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99998885

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=6.7e-15  Score=129.54  Aligned_cols=78  Identities=26%  Similarity=0.261  Sum_probs=74.2

Q ss_pred             CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      .+++|||+|||.++|+++|+    ++|++||.|..        |+|+++.. +  +|||||+|.+.++|..||+.|||..
T Consensus         8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~--------v~i~~~~~-~--rg~afV~f~~~~~A~~Ai~~l~g~~   76 (96)
T 2dgx_A            8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS--------VELSPHTD-Y--QLKAVVQMENLQDAIGAVNSLHRYK   76 (96)
T ss_dssp             SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECSCCS-T--TCCEEEEESSHHHHHHHHHHHTTEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE--------EEEEeCCC-C--CeEEEEEECCHHHHHHHHHHhCCCE
Confidence            77999999999999999999    99999999998        99999987 4  8999999999999999999999999


Q ss_pred             ecCeEEEEEeecc
Q psy2160         290 IRGKKIKVERAKF  302 (773)
Q Consensus       290 l~g~~I~V~~A~~  302 (773)
                      |.|++|+|.+|+.
T Consensus        77 ~~gr~l~V~~a~~   89 (96)
T 2dgx_A           77 IGSKKILVSLATG   89 (96)
T ss_dssp             ETTEEEEEEECCC
T ss_pred             ECCeEEEEEEcCC
Confidence            9999999999874

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.56  E-value=3.6e-15  Score=130.75  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=75.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .+.++.++.+|.++|||||+|.++++|.+|++.|||..|.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   84 (95)
T 2ek1_A           13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIP--------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS   84 (95)
T ss_dssp             --CEEEEEECCCTTCCHHHHHHHTTTSCBCT--------TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--------ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence            3468999999999999999999999999998        68888888889999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      ++|+|.++.
T Consensus        85 r~l~v~~a~   93 (95)
T 2ek1_A           85 RKVKLSGPS   93 (95)
T ss_dssp             EECEEECCC
T ss_pred             cEEEEEecc
Confidence            999999876

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.56  E-value=1.8e-14  Score=128.39  Aligned_cols=79  Identities=23%  Similarity=0.367  Sum_probs=74.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..  .++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   83 (103)
T 2cqi_A           14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGK   83 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHhcCCEeE--------EEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence            6799999999999999999999999999998        99999865  3699999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        84 ~l~V~~a~~   92 (103)
T 2cqi_A           84 EVKVNWATT   92 (103)
T ss_dssp             EEEEEECCC
T ss_pred             eEEEEECCC
Confidence            999999874

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.56  E-value=4.6e-15  Score=138.10  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=77.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.||.++|||||+|.+.++|..||..||+..|.|+
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~  116 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR  116 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTSCEEE--------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6799999999999999999999999999998        99999998899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus       117 ~l~V~~a~~  125 (129)
T 2kxn_B          117 RIRVDFSIT  125 (129)
T ss_dssp             CCEESCCSS
T ss_pred             EEEEEEecC
Confidence            999988763

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.56  E-value=3.2e-15  Score=125.63  Aligned_cols=76  Identities=28%  Similarity=0.383  Sum_probs=72.9

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||.++|+++|+++|++||.|.        .|.++.++.+|.++|||||+|.+.++|..|+..++ ..+.|++|
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l   71 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI   71 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCC--------CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence            4799999999999999999999999998        79999999889999999999999999999999999 99999999


Q ss_pred             EEEEc
Q psy2160         581 KVERA  585 (773)
Q Consensus       581 ~V~~a  585 (773)
                      .|.+|
T Consensus        72 ~v~~a   76 (77)
T 1uaw_A           72 DPKVA   76 (77)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99987

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.56  E-value=9.6e-15  Score=124.26  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=69.9

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ....|||+||++.+|+++|+++|.+||+|.        +++++.      ++|||||+|.++++|..|++.|||..+.|+
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~--------~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr   71 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLV--------SFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT   71 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHSCEE--------EEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhCCEE--------EEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence            468999999999999999999999999999        788864      599999999999999999999999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      +|+|..|.
T Consensus        72 ~I~V~~A~   79 (89)
T 2wbr_A           72 TIFAESPS   79 (89)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99999985

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.56  E-value=6.9e-15  Score=131.91  Aligned_cols=84  Identities=23%  Similarity=0.387  Sum_probs=78.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEec-CCCCCCcceEEEEeCChHHHHHHHHHh-CCce
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSIL-DGYE  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d-~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~  574 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+ ..+|.++|||||+|.+.++|.+||..| ||..
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~   83 (107)
T 2cph_A           12 KQTTSKILVRNIPFQANQREIRELFSTFGELK--------TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH   83 (107)
T ss_dssp             SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeE--------EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence            34679999999999999999999999999999        7999999 678999999999999999999999999 9999


Q ss_pred             ecCeEEEEEEcccc
Q psy2160         575 IRGKKIKVERAKFT  588 (773)
Q Consensus       575 i~g~~i~V~~a~~~  588 (773)
                      |.|+.|+|.+|...
T Consensus        84 ~~g~~l~v~~a~~~   97 (107)
T 2cph_A           84 LYGRRLVLEWADSE   97 (107)
T ss_dssp             SSSCBCEEEECCCC
T ss_pred             ECCCEEEEEeCCCC
Confidence            99999999999843

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.56  E-value=6.1e-15  Score=133.05  Aligned_cols=80  Identities=26%  Similarity=0.334  Sum_probs=74.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|+++..||.++|||||+|.+.++|..||..+ +..|.|+
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~   94 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK   94 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccCCeEE--------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence            7799999999999999999999999999998        999999989999999999999999999999966 5899999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        95 ~l~V~~a~~  103 (109)
T 2rs2_A           95 TIDPKVAFP  103 (109)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEccC
Confidence            999998863

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.55  E-value=1.5e-14  Score=139.13  Aligned_cols=81  Identities=23%  Similarity=0.354  Sum_probs=78.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|.++|++||.|..        |+|+++..||.++|||||+|.+.++|..||..||+..|.|+
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~  109 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR  109 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            6799999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus       110 ~l~V~~a~~  118 (156)
T 1h2v_Z          110 IIRTDWDAG  118 (156)
T ss_dssp             ECEEEEESC
T ss_pred             EEEEEECCC
Confidence            999999874

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.55  E-value=6.2e-15  Score=136.44  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=78.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|.++|++||.|..        |.|+.+..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   92 (126)
T 3ex7_B           21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ   92 (126)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence            6799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.+|..
T Consensus        93 ~l~v~~a~~  101 (126)
T 3ex7_B           93 PISVDWCFV  101 (126)
T ss_dssp             BCEEEESEE
T ss_pred             EEEEEEecC
Confidence            999999874

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.3e-14  Score=127.76  Aligned_cols=79  Identities=25%  Similarity=0.254  Sum_probs=74.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         498 QENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      ...++|||+|||.++|+++|+    ++|++||.|.        .|+|+.++.+   +|||||+|.+.++|..|+..|||.
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~--------~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~   75 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK--------SVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY   75 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--------EEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE--------EEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence            356899999999999999999    9999999999        7999999864   899999999999999999999999


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|++|+|.+|+.
T Consensus        76 ~~~gr~l~V~~a~~   89 (96)
T 2dgx_A           76 KIGSKKILVSLATG   89 (96)
T ss_dssp             EETTEEEEEEECCC
T ss_pred             EECCeEEEEEEcCC
Confidence            99999999999974

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=1.5e-14  Score=129.00  Aligned_cols=81  Identities=23%  Similarity=0.390  Sum_probs=76.2

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.|| |.        .|+|+++..+|.++|||||+|.+.++|..|+ .|||..|.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~   81 (103)
T 2dng_A           12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR--------SVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG   81 (103)
T ss_dssp             SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce--------EEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence            34578999999999999999999999998 77        7999999999999999999999999999999 89999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus        82 g~~l~V~~a~~   92 (103)
T 2dng_A           82 DRSLRVDIAEG   92 (103)
T ss_dssp             TEECEEEECCC
T ss_pred             CeEEEEEEecC
Confidence            99999999984

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.55  E-value=9.9e-15  Score=130.48  Aligned_cols=81  Identities=19%  Similarity=0.306  Sum_probs=76.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .|+|+.++ +|.++|||||+|.+.++|..||..|||..+.|
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   83 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVID--------ECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP   83 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence            4579999999999999999999999999999        79999998 59999999999999999999999999999998


Q ss_pred             ---eEEEEEEccc
Q psy2160         578 ---KKIKVERAKF  587 (773)
Q Consensus       578 ---~~i~V~~a~~  587 (773)
                         ++|+|.+|..
T Consensus        84 g~~~~l~V~~a~~   96 (105)
T 2dnh_A           84 GASSSLVVKFADT   96 (105)
T ss_dssp             TCSSCCEEEESCS
T ss_pred             CCCccEEEEECcc
Confidence               9999999984

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=7.7e-15  Score=135.55  Aligned_cols=79  Identities=14%  Similarity=0.218  Sum_probs=73.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||.|..        +.++.+..+|+++|||||+|.+.++|..||. ||+..|.|+
T Consensus        24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr   94 (124)
T 1wel_A           24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR   94 (124)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence            6799999999999999999999999999987        5666666679999999999999999999999 999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|.|.+|.
T Consensus        95 ~i~V~~a~  102 (124)
T 1wel_A           95 FIQVHPIT  102 (124)
T ss_dssp             CBEEEEEC
T ss_pred             EEEEEECC
Confidence            99999886

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.7e-14  Score=131.56  Aligned_cols=83  Identities=22%  Similarity=0.264  Sum_probs=78.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.++|.+||..|++ .|.
T Consensus        14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~   84 (116)
T 2cqd_A           14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE--------EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID   84 (116)
T ss_dssp             SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCee--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence            44679999999999999999999999999998        799999998999999999999999999999999998 899


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus        85 g~~l~V~~a~~~   96 (116)
T 2cqd_A           85 GRKANVNLAYLG   96 (116)
T ss_dssp             TEECEEEESTTT
T ss_pred             CEEEEEEEcccC
Confidence            999999999743

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.55  E-value=1.1e-14  Score=141.40  Aligned_cols=83  Identities=27%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||..+|+++|+.+|+.||.|.        .|.|+.+..+|.++|||||+|.+.++|..||..|||..|.
T Consensus        69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~  140 (165)
T 1rk8_A           69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM  140 (165)
T ss_dssp             CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEE--------EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34578999999999999999999999999999        7999999989999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|.|.+|..
T Consensus       141 g~~l~V~~a~~  151 (165)
T 1rk8_A          141 GQTIQVDWCFV  151 (165)
T ss_dssp             TEECEEEESEE
T ss_pred             CEEEEEEEecC
Confidence            99999999984

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.55  E-value=2.8e-15  Score=125.30  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=71.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||.++|+++|+++|++||.|..        |.+++++.+|.++|||||+|.+.++|..|++ +++..|.|++|.
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~   71 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE   71 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSE--------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence            5999999999999999999999999998        9999999889999999999999999999998 588999999999


Q ss_pred             EEee
Q psy2160         297 VERA  300 (773)
Q Consensus       297 V~~A  300 (773)
                      |.+|
T Consensus        72 v~~a   75 (75)
T 1iqt_A           72 IKVA   75 (75)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9765

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=1.1e-14  Score=132.29  Aligned_cols=78  Identities=22%  Similarity=0.367  Sum_probs=75.7

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        .|+|+.+..+|.++|||||+|.+.++|..|| .|||..|.|+.
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~   95 (114)
T 2cq4_A           25 ARTVFCMQLAARIRPRDLEDFFSAVGKVR--------DVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP   95 (114)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEe--------EEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence            48999999999999999999999999999        7999999999999999999999999999999 99999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |+|.+|.
T Consensus        96 l~V~~a~  102 (114)
T 2cq4_A           96 IIVQASQ  102 (114)
T ss_dssp             EEEEEHH
T ss_pred             EEEEecC
Confidence            9999998

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.55  E-value=7.5e-15  Score=137.61  Aligned_cols=78  Identities=18%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc---ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~---I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      ..++|||+|||+++|+++|+++|+.||.   |..        |+|++|+. |+++|||||+|.+.++|.+||+ ||+..|
T Consensus        43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~--------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l  112 (136)
T 2hgl_A           43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG--------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM  112 (136)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT--------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence            6799999999999999999999999999   777        99999998 9999999999999999999999 999999


Q ss_pred             cCeEEEEEeec
Q psy2160         291 RGKKIKVERAK  301 (773)
Q Consensus       291 ~g~~I~V~~A~  301 (773)
                      .|++|.|..|.
T Consensus       113 ~gr~i~V~~a~  123 (136)
T 2hgl_A          113 GHRYIEVFKSH  123 (136)
T ss_dssp             SSSEEEEEECC
T ss_pred             CCEEEEEEECC
Confidence            99999998875

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=6.3e-15  Score=131.45  Aligned_cols=80  Identities=29%  Similarity=0.510  Sum_probs=76.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..|++.|||..|.|+.
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   79 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVGPVV--------SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA   79 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCS--------EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcCCee--------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence            58999999999999999999999999998        7999999888999999999999999999999999999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |+|.+|..
T Consensus        80 l~v~~a~~   87 (104)
T 1p1t_A           80 LRVDNAAS   87 (104)
T ss_dssp             BEEEETTC
T ss_pred             EEEEeCCC
Confidence            99999983

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=9.1e-15  Score=130.07  Aligned_cols=76  Identities=18%  Similarity=0.309  Sum_probs=69.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC--Cceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln--g~~l~  291 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        |+|+++      +|||||+|.+.++|..||+.|+  +..|.
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~   80 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR   80 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence            7899999999999999999999999999998        999864      6899999999999999999876  47899


Q ss_pred             CeEEEEEeeccc
Q psy2160         292 GKKIKVERAKFT  303 (773)
Q Consensus       292 g~~I~V~~A~~~  303 (773)
                      |++|+|.+|+.+
T Consensus        81 Gr~l~V~~A~~~   92 (105)
T 1sjq_A           81 GQPIYIQFSNHK   92 (105)
T ss_dssp             TEECCBCCCSSS
T ss_pred             CEEEEEEEcCCC
Confidence            999999998743

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=2.3e-14  Score=127.66  Aligned_cols=81  Identities=22%  Similarity=0.347  Sum_probs=75.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.+..  .++|||||+|.+.++|..|+..|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~   81 (103)
T 2cqi_A           12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK--------SCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKIL   81 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred             CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe--------EEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence            34679999999999999999999999999999        799999975  36999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus        82 g~~l~V~~a~~   92 (103)
T 2cqi_A           82 GKEVKVNWATT   92 (103)
T ss_dssp             TEEEEEEECCC
T ss_pred             CCeEEEEECCC
Confidence            99999999984

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.55  E-value=4e-14  Score=126.11  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=74.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|++++.||.++|||||+|.+.++|..||.  ++..|.|+
T Consensus        14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~   83 (103)
T 2cqg_A           14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR   83 (103)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred             CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence            6799999999999999999999999999998        9999999889999999999999999999998  47789999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.++..
T Consensus        84 ~l~v~~a~~   92 (103)
T 2cqg_A           84 WCDCKLPNS   92 (103)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEEecCC
Confidence            999999874

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.55  E-value=2.1e-14  Score=135.25  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=75.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.+|+++|||||+|.+.++|..||+.||+..|.|+
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~  133 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR  133 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            7899999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEee
Q psy2160         294 KIKVERA  300 (773)
Q Consensus       294 ~I~V~~A  300 (773)
                      +|+|.+|
T Consensus       134 ~l~v~~A  140 (140)
T 2ku7_A          134 TIRVNLA  140 (140)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEeC
Confidence            9999875

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=7.6e-15  Score=130.76  Aligned_cols=78  Identities=13%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||++ .        |+|++++ +|+++|||||+|.+.++|.+||+ +|+..|.|+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr   82 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-R--------VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR   82 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCCCS-E--------EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCce-E--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence            67999999999999999999999999965 5        9999998 59999999999999999999996 799999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|.|..+..
T Consensus        83 ~i~V~~~~~   91 (102)
T 1wez_A           83 YVELFLNST   91 (102)
T ss_dssp             CCEEEEECC
T ss_pred             EEEEEECCC
Confidence            999988764

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.54  E-value=1.1e-14  Score=134.31  Aligned_cols=80  Identities=28%  Similarity=0.477  Sum_probs=76.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++++.+|.++|||||+|.+.++|..|| .|||..|.|+
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~  105 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINR--------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR  105 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTSCEEE--------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence            5799999999999999999999999999998        999999888999999999999999999999 6999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+++.
T Consensus       106 ~l~V~~a~~  114 (124)
T 2jwn_A          106 TIKVLPKRT  114 (124)
T ss_dssp             ECEEEESSC
T ss_pred             EEEEEECCC
Confidence            999999874

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=129.52  Aligned_cols=83  Identities=18%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++. |.++|||||+|.+.++|..|+..|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   82 (114)
T 2do0_A           12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV--------RADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLF   82 (114)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            34578999999999999999999999999999        799999985 899999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.++...
T Consensus        83 g~~l~v~~a~~~   94 (114)
T 2do0_A           83 DRPMHVKMDERA   94 (114)
T ss_dssp             TEECEEEECSCC
T ss_pred             CCEEEEEEcccC
Confidence            999999999743

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.5e-15  Score=130.28  Aligned_cols=81  Identities=17%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+.++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   74 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIV--------STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA   74 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTTTSCEE--------EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence            4578999999999999999999999999999        89999999889999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|+|+++.
T Consensus        75 ~~~~~~~~~   83 (85)
T 1x4e_A           75 QMAKQSGPS   83 (85)
T ss_dssp             ESCCSSCCC
T ss_pred             EEEeecCCC
Confidence            999887654

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.54  E-value=7.8e-15  Score=132.79  Aligned_cols=83  Identities=20%  Similarity=0.300  Sum_probs=76.4

Q ss_pred             CccEEEEcCCCCCCCHHHHH---HHHhhcCcccccccCCceeEEEEecCCCC---CcceEEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPYTK---DFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~---~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg---~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      ..++|||+|||+++|+++|+   ++|++||.|..        |+|.++..+|   .++|||||+|.+.++|..||+.||+
T Consensus        14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~--------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng   85 (111)
T 2cpi_A           14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN   85 (111)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE--------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence            67899999999999999999   99999999998        9999988644   5669999999999999999999999


Q ss_pred             ceecCeEEEEEeecccc
Q psy2160         288 YEIRGKKIKVERAKFTM  304 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~~~  304 (773)
                      ..|.|++|+|.+|....
T Consensus        86 ~~~~gr~l~V~~a~~k~  102 (111)
T 2cpi_A           86 VVVDGRTLKASLGTTKY  102 (111)
T ss_dssp             EEETTEEEEEESCCCCS
T ss_pred             CEECCEEEEEEeccccc
Confidence            99999999999988543

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.4e-14  Score=130.64  Aligned_cols=79  Identities=22%  Similarity=0.406  Sum_probs=74.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+++..  .++|||||+|.+.++|..|+..|||..|.|+
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   97 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR   97 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTCCCSC--------EEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCEEE--------EEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            7799999999999999999999999999998        99999864  5899999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        98 ~l~V~~a~~  106 (109)
T 2err_A           98 KIEVNNATA  106 (109)
T ss_dssp             ECEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999863

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=8.7e-15  Score=131.78  Aligned_cols=82  Identities=20%  Similarity=0.322  Sum_probs=76.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc-ccccccCCceeEEEE-ecCCCCCcceEEEEEecChHHHHHHHHHcC--Cce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKESVDLALSILD--GYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~-I~~~~~~~~p~i~l~-~d~~tg~~kG~AfV~F~~~esA~~Al~~ln--g~~  289 (773)
                      .+++|||+|||.++|+++|+++|++||. |..        |.|+ .+..||.++|||||+|.+.++|..||..||  +..
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~--------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~   78 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ   78 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE--------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence            6799999999999999999999999998 988        8988 788889999999999999999999999996  589


Q ss_pred             ecCeEEEEEeeccc
Q psy2160         290 IRGKKIKVERAKFT  303 (773)
Q Consensus       290 l~g~~I~V~~A~~~  303 (773)
                      |.|++|+|.+|...
T Consensus        79 ~~g~~l~V~~a~~~   92 (109)
T 2dis_A           79 LWGHQIAVDWAEPE   92 (109)
T ss_dssp             BTTBCCEEEESCSS
T ss_pred             ecCCeEEEEEcCCC
Confidence            99999999998743

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.2e-14  Score=129.69  Aligned_cols=81  Identities=23%  Similarity=0.383  Sum_probs=76.2

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-CCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...++|||+|||.++|+++|+++|+.|| |.        .|+|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~--------~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~   82 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG   82 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE--------EEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce--------EEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence            4568999999999999999999999999 87        7999999987 899999999999999999999 99999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|.|.+|...
T Consensus        83 g~~l~V~~a~~~   94 (104)
T 1wi8_A           83 NKRIRVDVADQA   94 (104)
T ss_dssp             TEECEEEECCCC
T ss_pred             CcEEEEEEccCC
Confidence            999999999843

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=127.18  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             ccEEEEcCCCCCC------CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc
Q psy2160         215 STKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  288 (773)
Q Consensus       215 ~~~VyV~nLP~~~------te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~  288 (773)
                      +++|||+|||.++      |+++|+++|++||.|..        |+|.  ..||+++|||||+|.+.++|..||..|||.
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--------v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~   70 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY   70 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--------EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--------EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence            4799999999999      78999999999999998        8887  346999999999999999999999999999


Q ss_pred             eecCe-EEEE
Q psy2160         289 EIRGK-KIKV  297 (773)
Q Consensus       289 ~l~g~-~I~V  297 (773)
                      .|.|+ +|+|
T Consensus        71 ~~~g~~~l~V   80 (81)
T 2krb_A           71 KLDKQHTFRV   80 (81)
T ss_dssp             CCSSSSCCCC
T ss_pred             ccCCceeEEe
Confidence            99999 8887

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1e-14  Score=129.92  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=77.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.+  +|.++|||||+|.+.++|..|+..|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~   81 (103)
T 2d9p_A           12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT--------SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA   81 (103)
T ss_dssp             CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEE--------EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            34679999999999999999999999999999        7999998  5899999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|.|.+|...
T Consensus        82 g~~l~V~~a~~~   93 (103)
T 2d9p_A           82 TKPLYVALAQRK   93 (103)
T ss_dssp             SSBCEEEECSSC
T ss_pred             CcEEEEEEeccc
Confidence            999999999843

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.54  E-value=4.5e-15  Score=138.55  Aligned_cols=81  Identities=22%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcc--cccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc---
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLV--MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY---  288 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I--~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~---  288 (773)
                      .+++|||+|||+++|+++|+++|++||.|  ..        |+|++|+.||+++|||||+|.+. +|..||..||+.   
T Consensus        22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~--------v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~   92 (131)
T 2m2b_A           22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSN--------VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP   92 (131)
T ss_dssp             CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT--------EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee--------EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence            67899999999999999999999999999  44        89999998899999999999999 999999999999   


Q ss_pred             -eecCeEEEEEeeccc
Q psy2160         289 -EIRGKKIKVERAKFT  303 (773)
Q Consensus       289 -~l~g~~I~V~~A~~~  303 (773)
                       .|.|++|+|.+|...
T Consensus        93 ~~~~gr~l~V~~a~~~  108 (131)
T 2m2b_A           93 LTIDGKTINVEFAKGS  108 (131)
T ss_dssp             CCGGGCCCCCEECCCS
T ss_pred             ccCCCEEEEEEECCCC
Confidence             999999999998753

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.54  E-value=7.3e-15  Score=131.58  Aligned_cols=78  Identities=17%  Similarity=0.170  Sum_probs=72.9

Q ss_pred             CccEEEEcCCCCCC------CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~------te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      .+++|||+|||..+      |+++|+++|++||.|..        |+|+  ..||+++|||||+|.+.++|..||..|||
T Consensus        14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--------v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g   83 (105)
T 2nlw_A           14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG   83 (105)
T ss_dssp             CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--------EECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred             CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--------EEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence            57899999999999      78999999999999998        8888  35699999999999999999999999999


Q ss_pred             ceecCe-EEEEEeec
Q psy2160         288 YEIRGK-KIKVERAK  301 (773)
Q Consensus       288 ~~l~g~-~I~V~~A~  301 (773)
                      ..|.|+ +|+|.+|.
T Consensus        84 ~~~~g~~~l~V~~a~   98 (105)
T 2nlw_A           84 YKLDKQHTFRVNLFT   98 (105)
T ss_dssp             EECSTTCEEEEECSC
T ss_pred             cccCCCceEEEEEcc
Confidence            999998 99999876

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.54  E-value=4.5e-15  Score=138.15  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=79.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus        43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~  114 (129)
T 2kxn_B           43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD  114 (129)
T ss_dssp             CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEE--------EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            45678999999999999999999999999999        7999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|.|.+|..
T Consensus       115 g~~l~V~~a~~  125 (129)
T 2kxn_B          115 GRRIRVDFSIT  125 (129)
T ss_dssp             SSCCEESCCSS
T ss_pred             CEEEEEEEecC
Confidence            99999999873

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.5e-15  Score=131.44  Aligned_cols=82  Identities=18%  Similarity=0.170  Sum_probs=77.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce-
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~-  574 (773)
                      ....++|||+|||.++|+++|+++|+. ||.|.        .|+|+.+. +|.++|||||+|.+.++|..|+..|||.. 
T Consensus         6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~   76 (104)
T 2dhg_A            6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR--------GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVG   76 (104)
T ss_dssp             SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE--------EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCS
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE--------EEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcc
Confidence            346789999999999999999999999 99998        79999998 79999999999999999999999999999 


Q ss_pred             ecCeEEEEEEccc
Q psy2160         575 IRGKKIKVERAKF  587 (773)
Q Consensus       575 i~g~~i~V~~a~~  587 (773)
                      |.|++|+|.+|..
T Consensus        77 ~~g~~l~v~~a~~   89 (104)
T 2dhg_A           77 LGSKPVRLSVAIP   89 (104)
T ss_dssp             SSSSCCCCCBCCC
T ss_pred             cCCEeEEEEEccC
Confidence            9999999999974

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.7e-14  Score=128.27  Aligned_cols=78  Identities=17%  Similarity=0.291  Sum_probs=71.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC--Cce
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYE  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~~  574 (773)
                      +.+.++|||+|||.++|+++|+++|++||.|.        +|+|+++      +|||||+|.+.++|..|++.|+  +..
T Consensus        13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~--------~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~   78 (105)
T 1sjq_A           13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV   78 (105)
T ss_dssp             CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence            45679999999999999999999999999999        7999865      7999999999999999999886  478


Q ss_pred             ecCeEEEEEEcccc
Q psy2160         575 IRGKKIKVERAKFT  588 (773)
Q Consensus       575 i~g~~i~V~~a~~~  588 (773)
                      |.|++|+|.+|+..
T Consensus        79 l~Gr~l~V~~A~~~   92 (105)
T 1sjq_A           79 LRGQPIYIQFSNHK   92 (105)
T ss_dssp             ETTEECCBCCCSSS
T ss_pred             ECCEEEEEEEcCCC
Confidence            99999999999843

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.54  E-value=1.5e-14  Score=131.86  Aligned_cols=81  Identities=21%  Similarity=0.352  Sum_probs=77.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|++++.||.++|||||+|.+.++|..||.. ++..|.|+
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~   96 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR   96 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence            6799999999999999999999999999998        99999998899999999999999999999996 99999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        97 ~l~V~~a~~~  106 (116)
T 1x4b_A           97 VVEPKRAVAR  106 (116)
T ss_dssp             EEEEECCSSC
T ss_pred             EEEEEECCCC
Confidence            9999998743

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.53  E-value=1.8e-14  Score=135.74  Aligned_cols=84  Identities=19%  Similarity=0.348  Sum_probs=79.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|++++.+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus        39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~  110 (139)
T 1u6f_A           39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE--------SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL  110 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEE--------EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34578999999999999999999999999999        7999999988999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus       111 g~~l~v~~a~~~  122 (139)
T 1u6f_A          111 NKRLKVALAASG  122 (139)
T ss_dssp             SCEEEEEESSCC
T ss_pred             CeEEEEEECCCC
Confidence            999999999843

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.53  E-value=1.2e-14  Score=134.52  Aligned_cols=84  Identities=23%  Similarity=0.326  Sum_probs=79.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus        19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~   90 (126)
T 3ex7_B           19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIK--------NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM   90 (126)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence            34578999999999999999999999999998        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|.|.+|...
T Consensus        91 g~~l~v~~a~~~  102 (126)
T 3ex7_B           91 GQPISVDWCFVR  102 (126)
T ss_dssp             SSBCEEEESEES
T ss_pred             CeEEEEEEecCC
Confidence            999999999843

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.53  E-value=1.8e-14  Score=125.42  Aligned_cols=80  Identities=21%  Similarity=0.449  Sum_probs=75.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|+++  +|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g   75 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVL--------YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSG   75 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCEE--------EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            4678999999999999999999999999999        7999885  58899999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.+++.
T Consensus        76 ~~l~v~~a~~   85 (92)
T 2dgv_A           76 REIDVRIDRN   85 (92)
T ss_dssp             BCCCCEECSC
T ss_pred             cEEEEEEcCC
Confidence            9999999984

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=3.5e-14  Score=123.43  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=74.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.| .|.        .|+|+++ .+|+++|||||+|.+.++|..|+. |||..|.|
T Consensus         8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~--------~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g   76 (91)
T 2dgw_A            8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV--------AIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG   76 (91)
T ss_dssp             CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS--------EEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred             CCccEEEEECCCCCCCHHHHHHHHhhC-Cce--------EEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence            457899999999999999999999999 777        7999999 569999999999999999999999 99999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|.+|..
T Consensus        77 r~i~v~~a~~   86 (91)
T 2dgw_A           77 RYIEVFREKS   86 (91)
T ss_dssp             EEEEEEEESS
T ss_pred             cEEEEEECCc
Confidence            9999999984

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=4.6e-14  Score=125.66  Aligned_cols=82  Identities=21%  Similarity=0.377  Sum_probs=76.2

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+..  .++|||||+|.+.++|..|+..|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~   81 (103)
T 2cq3_A           12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE   81 (103)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE--------EEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            44679999999999999999999999999999        799999875  38999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus        82 g~~l~v~~a~~~   93 (103)
T 2cq3_A           82 GRKIEVNNATAR   93 (103)
T ss_dssp             TEECEEEECCSS
T ss_pred             CEEEEEEEcccC
Confidence            999999999843

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.53  E-value=3.3e-15  Score=129.69  Aligned_cols=78  Identities=31%  Similarity=0.421  Sum_probs=74.0

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.+ |..|+..|||..+.|++|
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l   72 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVF--------NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI   72 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCS--------EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEE--------EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence            6899999999999999999999999999        7999999989999999999999999 999999999999999999


Q ss_pred             EEEEccc
Q psy2160         581 KVERAKF  587 (773)
Q Consensus       581 ~V~~a~~  587 (773)
                      +|.+|..
T Consensus        73 ~V~~a~~   79 (90)
T 2ki2_A           73 RVTEANP   79 (90)
T ss_dssp             SEEEC--
T ss_pred             EEEEcCC
Confidence            9999984

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.53  E-value=2.6e-14  Score=131.92  Aligned_cols=82  Identities=17%  Similarity=0.284  Sum_probs=77.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus        32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~  102 (124)
T 2kt5_A           32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD  102 (124)
T ss_dssp             CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCS--------EEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34678999999999999999999999999998        79999998 7999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus       103 g~~l~V~~a~~  113 (124)
T 2kt5_A          103 GRPMDIQLVAS  113 (124)
T ss_dssp             SCEEEEEEECC
T ss_pred             CcEEEEEEeCC
Confidence            99999999984

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.29  E-value=6.5e-16  Score=141.01  Aligned_cols=89  Identities=29%  Similarity=0.444  Sum_probs=84.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..+...+.|.|+|++++.+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   85 (116)
T 2lcw_A            6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   85 (116)
Confidence            67999999999999999999999999999887777888899999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        86 ~l~V~~a~~   94 (116)
T 2lcw_A           86 PIKVSFATR   94 (116)
Confidence            999998873

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=127.13  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=69.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce--ec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE--IR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~--l~  291 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++      .||||||+|.+.++|..|++.|++..  |.
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~   85 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEFGPISY--------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA   85 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence            6789999999999999999999999999998        88874      36899999999999999999999876  78


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|++|+.
T Consensus        86 Gr~i~V~~S~~   96 (100)
T 3r27_A           86 GHPAFVNYSTS   96 (100)
T ss_dssp             TEEEEEEECSC
T ss_pred             CcEEEEEeccc
Confidence            99999999874

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.53  E-value=1.9e-14  Score=129.88  Aligned_cols=82  Identities=26%  Similarity=0.329  Sum_probs=74.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+++..+|.++|||||+|.+.++|..||..+ |..|.
T Consensus        22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~   92 (109)
T 2rs2_A           22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD   92 (109)
T ss_dssp             ----CCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeE--------EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence            44678999999999999999999999999999        7999999999999999999999999999999876 59999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.+|..
T Consensus        93 g~~l~V~~a~~  103 (109)
T 2rs2_A           93 SKTIDPKVAFP  103 (109)
T ss_dssp             TEEEEEEECCC
T ss_pred             CEEEEEEEccC
Confidence            99999999983

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.53  E-value=2.3e-14  Score=128.03  Aligned_cols=80  Identities=20%  Similarity=0.303  Sum_probs=73.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||.|...       |+|+.+ .+|+++|||||+|.+.++|..||.. |+..|.|+
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~-------v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr   84 (104)
T 1wg5_A           14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR   84 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE-------EECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccee-------EEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence            67999999999999999999999999999753       788888 5599999999999999999999996 99999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|.|..+..
T Consensus        85 ~i~v~~~~~   93 (104)
T 1wg5_A           85 YIEIFKSSR   93 (104)
T ss_dssp             CCEEEEECT
T ss_pred             EEEEEECCH
Confidence            999988764

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.53  E-value=2.4e-14  Score=126.08  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce--
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE--  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~--  574 (773)
                      ..++++|||+|||.++|+++|+++|++||.|.        +|+|++      .+|+|||+|.+.++|..|++.|+|..  
T Consensus        18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~--------~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~   83 (100)
T 3r27_A           18 TPASPVVHIRGLIDGVVEADLVEALQEFGPIS--------YVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY   83 (100)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEE--------EEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence            45678999999999999999999999999999        788874      37899999999999999999999876  


Q ss_pred             ecCeEEEEEEccc
Q psy2160         575 IRGKKIKVERAKF  587 (773)
Q Consensus       575 i~g~~i~V~~a~~  587 (773)
                      |.|++|.|++|+.
T Consensus        84 i~Gr~i~V~~S~~   96 (100)
T 3r27_A           84 IAGHPAFVNYSTS   96 (100)
T ss_dssp             ETTEEEEEEECSC
T ss_pred             eCCcEEEEEeccc
Confidence            7899999999983

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=129.73  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=77.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..||.. |+..|.
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~   83 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV--------DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD   83 (105)
T ss_dssp             SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE--------EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence            34679999999999999999999999999999        799999998899999999999999999999988 999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.+|..
T Consensus        84 g~~l~V~~a~~   94 (105)
T 2dh8_A           84 GRNIDPKPCTP   94 (105)
T ss_dssp             TEEEBCCCSCC
T ss_pred             CEEEEEEEccC
Confidence            99999999984

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.53  E-value=2.2e-14  Score=135.04  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=76.5

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|++++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus        60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~  131 (140)
T 2ku7_A           60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF  131 (140)
T ss_dssp             CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred             CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            44679999999999999999999999999999        7999999888999999999999999999999999999999


Q ss_pred             CeEEEEEEc
Q psy2160         577 GKKIKVERA  585 (773)
Q Consensus       577 g~~i~V~~a  585 (773)
                      |++|+|.+|
T Consensus       132 g~~l~v~~A  140 (140)
T 2ku7_A          132 GRTIRVNLA  140 (140)
T ss_dssp             TEEEEEEC-
T ss_pred             CEEEEEEeC
Confidence            999999976

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=1.5e-14  Score=131.53  Aligned_cols=79  Identities=11%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcc-eeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLV-MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I-~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...++|||+|||.++|+++|+++|+.||.| .        .|+|++|. +|+++|||||+|.+.++|.+||.. |+..|.
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~   82 (114)
T 2cpy_A           13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDEN--------AVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN   82 (114)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTTTSCCCST--------TEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred             CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCC--------eEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence            456899999999999999999999999999 6        69999998 799999999999999999999976 999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|.|.+|.
T Consensus        83 gr~i~v~~a~   92 (114)
T 2cpy_A           83 GREAFVHVVT   92 (114)
T ss_dssp             TEEEEEEEEC
T ss_pred             CeEEEEEECC
Confidence            9999999998

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.52  E-value=3.3e-14  Score=136.71  Aligned_cols=83  Identities=22%  Similarity=0.341  Sum_probs=79.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.+..+|.++|||||+|.+.++|..||..|||..|.
T Consensus        36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~  107 (156)
T 1h2v_Z           36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK--------KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD  107 (156)
T ss_dssp             TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34679999999999999999999999999999        7999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus       108 g~~l~V~~a~~  118 (156)
T 1h2v_Z          108 DRIIRTDWDAG  118 (156)
T ss_dssp             TEECEEEEESC
T ss_pred             CeEEEEEECCC
Confidence            99999999984

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.52  E-value=3.5e-14  Score=128.78  Aligned_cols=88  Identities=27%  Similarity=0.402  Sum_probs=81.7

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  425 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G  425 (773)
                      +..+++|+|+||+++.++ .++++..+|+++|+++|++||.|.+|.+....++|++||.|.+.++|.+|+..|||++|+|
T Consensus         4 p~ps~vv~L~Nm~~~~e~-~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G   82 (114)
T 3s6e_A            4 PLATQCFQLSNMFNPQTE-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG   82 (114)
T ss_dssp             CCCCSEEEEESSCCTTTC-CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCcEEEEECCCChHHc-cChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            456889999999999885 6788999999999999999999999999877789999999999999999999999999999


Q ss_pred             eeEEEEecC
Q psy2160         426 RQITAETWD  434 (773)
Q Consensus       426 r~I~v~~~~  434 (773)
                      |.|.|.++.
T Consensus        83 R~i~v~~~~   91 (114)
T 3s6e_A           83 KMITAAYVP   91 (114)
T ss_dssp             EECEEEEEC
T ss_pred             EEEEEEEEc
Confidence            999999874

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.52  E-value=2.7e-14  Score=138.76  Aligned_cols=81  Identities=27%  Similarity=0.312  Sum_probs=77.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||..+|+++|.++|++||.|..        |.|+++..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus        71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~  142 (165)
T 1rk8_A           71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ  142 (165)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6789999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.+|..
T Consensus       143 ~l~V~~a~~  151 (165)
T 1rk8_A          143 TIQVDWCFV  151 (165)
T ss_dssp             ECEEEESEE
T ss_pred             EEEEEEecC
Confidence            999999874

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=2.4e-14  Score=129.16  Aligned_cols=80  Identities=21%  Similarity=0.423  Sum_probs=75.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+.+.  +.++|||||+|.+.++|.+|+..|||..|.
T Consensus        26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~   95 (109)
T 2err_A           26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE   95 (109)
T ss_dssp             TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCS--------CEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEE--------EEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            45679999999999999999999999999998        79999986  448999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|+|.+|+
T Consensus        96 g~~l~V~~a~  105 (109)
T 2err_A           96 GRKIEVNNAT  105 (109)
T ss_dssp             TEECEEEECC
T ss_pred             CEEEEEEECC
Confidence            9999999987

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.52  E-value=1.8e-14  Score=130.09  Aligned_cols=76  Identities=24%  Similarity=0.354  Sum_probs=70.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcC-cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G-~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||+++|+++|+++|++|| .|..        |.|+.    +.++|||||+|.+.++|..||+.|||..|.|
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~--------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G   94 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTF--------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRG   94 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE--------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE--------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            679999999999999999999999999 8887        77753    4578999999999999999999999999999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      ++|+|..+.
T Consensus        95 r~i~V~~a~  103 (111)
T 2jvr_A           95 SVITVERDD  103 (111)
T ss_dssp             EEEEEEESC
T ss_pred             eEEEEEECC
Confidence            999998876

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.52  E-value=2.1e-14  Score=160.73  Aligned_cols=82  Identities=17%  Similarity=0.297  Sum_probs=78.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||..+|+++|.++|+.||.|.        .|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|
T Consensus       100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g  171 (437)
T 3pgw_S          100 DAFKTLFVARVNYDTTESKLRREFEVYGPIK--------RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG  171 (437)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCee--------EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence            4568999999999999999999999999999        79999998889999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|.+|..
T Consensus       172 r~i~V~~a~~  181 (437)
T 3pgw_S          172 RRVLVDVERG  181 (437)
T ss_pred             EEEEEEEeCC
Confidence            9999999984

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.52  E-value=1.5e-14  Score=128.31  Aligned_cols=75  Identities=24%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||.++|+++|+++|++||.|.        .|.|+.+     ++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   67 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLR--------TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV   67 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCS--------EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence            5899999999999999999999999998        7999877     58999999999999999999999999999999


Q ss_pred             EEEEcccc
Q psy2160         581 KVERAKFT  588 (773)
Q Consensus       581 ~V~~a~~~  588 (773)
                      +|.+|+..
T Consensus        68 ~V~~a~~~   75 (101)
T 2hvz_A           68 RVELSTGM   75 (101)
T ss_dssp             EEEESSSC
T ss_pred             EEEEccCC
Confidence            99999843

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.2e-14  Score=129.16  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.| .|..        |+|++|+. |+++|||||+|.+.++|.+|| .+|+..|.|+
T Consensus        15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~--------v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr   83 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDA--------VHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR   83 (109)
T ss_dssp             HHHEEEEECCCSSCCHHHHHHHTTTS-CCCE--------EEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhccC-CeeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence            67899999999999999999999999 6776        99999988 999999999999999999999 5999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      .|.|..|.
T Consensus        84 ~i~V~~a~   91 (109)
T 2dnn_A           84 YVEVSPAT   91 (109)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99998775

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.52  E-value=6.2e-15  Score=137.60  Aligned_cols=85  Identities=22%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc---
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY---  573 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~---  573 (773)
                      ....++|||+|||.++|+++|+++|++||.|...      +|+|++|+.+|+++|||||+|.+. +|..|+..|||.   
T Consensus        20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~------~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~   92 (131)
T 2m2b_A           20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSS------NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP   92 (131)
T ss_dssp             SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT------TEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee------eEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence            3467899999999999999999999999999611      399999999999999999999999 999999999999   


Q ss_pred             -eecCeEEEEEEcccc
Q psy2160         574 -EIRGKKIKVERAKFT  588 (773)
Q Consensus       574 -~i~g~~i~V~~a~~~  588 (773)
                       .|.|+.|.|.+|...
T Consensus        93 ~~~~gr~l~V~~a~~~  108 (131)
T 2m2b_A           93 LTIDGKTINVEFAKGS  108 (131)
T ss_dssp             CCGGGCCCCCEECCCS
T ss_pred             ccCCCEEEEEEECCCC
Confidence             999999999999843

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.52  E-value=8.5e-15  Score=122.37  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=71.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||.++|+++|+++|++||.|.        .|.+++++.+|.++|||||+|.+.++|..|+. +++..|.|+.|.
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~   71 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVE--------SIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE   71 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCS--------EECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence            589999999999999999999999998        79999999889999999999999999999997 599999999999


Q ss_pred             EEEc
Q psy2160         582 VERA  585 (773)
Q Consensus       582 V~~a  585 (773)
                      |.+|
T Consensus        72 v~~a   75 (75)
T 1iqt_A           72 IKVA   75 (75)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9875

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.52  E-value=5e-14  Score=126.85  Aligned_cols=79  Identities=24%  Similarity=0.396  Sum_probs=73.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|..+   +.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   89 (109)
T 1x4a_A           21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY   89 (109)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            6799999999999999999999999999998        888543   67899999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|+..
T Consensus        90 ~l~V~~a~~~   99 (109)
T 1x4a_A           90 RLRVEFPRSG   99 (109)
T ss_dssp             ECEEECCCCC
T ss_pred             EEEEEEcccC
Confidence            9999998743

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=130.72  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=74.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc---ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~---I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      ..++|||+|||+++|+++|+++|+.||.   |..        |+|+++.. |+++|||||+|.+.++|..||. +|+..|
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~   79 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG--------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM   79 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT--------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce--------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee
Confidence            7799999999999999999999999998   787        99999998 9999999999999999999999 999999


Q ss_pred             cCeEEEEEeec
Q psy2160         291 RGKKIKVERAK  301 (773)
Q Consensus       291 ~g~~I~V~~A~  301 (773)
                      .|+.|.|..|.
T Consensus        80 ~gr~i~V~~a~   90 (107)
T 2lmi_A           80 GQRYVEVYEIN   90 (107)
T ss_dssp             SSSCCCCEECC
T ss_pred             CCeEEEEEECC
Confidence            99999998876

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.52  E-value=7.2e-15  Score=130.36  Aligned_cols=81  Identities=22%  Similarity=0.377  Sum_probs=73.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecC-CCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~-~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ....++|||+|||.++|+++|+++|+.|| |.        .|+|+.+. .+|+++|||||+|.+.++|..|+ .|||..|
T Consensus        16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~--------~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~   85 (100)
T 2j76_E           16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL   85 (100)
T ss_dssp             ----CEEEESCCSSCCSSSHHHHHSCSSC-EE--------EEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce--------EEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence            34679999999999999999999999999 88        79999998 57999999999999999999999 8999999


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|+.|+|.+|+.
T Consensus        86 ~g~~l~V~~a~~   97 (100)
T 2j76_E           86 GNRRIRVDVADQ   97 (100)
T ss_dssp             TTBCCCCEECCC
T ss_pred             CCeEEEEEeccC
Confidence            999999999873

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.51  E-value=1.8e-14  Score=147.55  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=75.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcC--cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G--~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ..++|||+|||+++|+++|+++|++||  .|..        |+|++|+.||+++|||||+|.+.++|.+||+.||+..|.
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~  138 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH  138 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence            678999999999999999999999999  8988        999999988999999999999999999999999999999


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |++|+|.+|.
T Consensus       139 Gr~l~V~~a~  148 (229)
T 3q2s_C          139 GQNPVVTPVN  148 (229)
T ss_dssp             TBCCEEEECC
T ss_pred             CEEeEEEECC
Confidence            9999999876

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=4.7e-14  Score=128.10  Aligned_cols=79  Identities=19%  Similarity=0.397  Sum_probs=74.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee---
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI---  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l---  290 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|+++. +|.++|||||+|.+.++|..||..|||..|   
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~   94 (114)
T 1x5o_A           24 DPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP   94 (114)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence            6799999999999999999999999999998        9999999 699999999999999999999999999999   


Q ss_pred             -----cCeEEEEEeec
Q psy2160         291 -----RGKKIKVERAK  301 (773)
Q Consensus       291 -----~g~~I~V~~A~  301 (773)
                           .+++|.|.+|.
T Consensus        95 ~~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           95 PGVSAPTEPLLCKFSG  110 (114)
T ss_dssp             TTSCCCSSCBEEEECC
T ss_pred             ccccCCCCceeEEccC
Confidence                 57889998876

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=2e-14  Score=129.36  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=76.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCc-ceeccCCCceEEEEE-ecCCCCCCcceEEEEeCChHHHHHHHHHhC--Cc
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKESVDLALSILD--GY  573 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-I~~~~~~~~~~i~l~-~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~  573 (773)
                      ...++|||+|||.++|+++|+++|+.||. |.        .|.|+ .+..+|.++|||||+|.+.++|..|+..||  +.
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~--------~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~   77 (109)
T 2dis_A            6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVL--------DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI   77 (109)
T ss_dssp             CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEE--------EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCce--------EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc
Confidence            45789999999999999999999999998 88        78888 788888999999999999999999999996  58


Q ss_pred             eecCeEEEEEEcccc
Q psy2160         574 EIRGKKIKVERAKFT  588 (773)
Q Consensus       574 ~i~g~~i~V~~a~~~  588 (773)
                      .|.|+.|+|.+|...
T Consensus        78 ~~~g~~l~V~~a~~~   92 (109)
T 2dis_A           78 QLWGHQIAVDWAEPE   92 (109)
T ss_dssp             CBTTBCCEEEESCSS
T ss_pred             eecCCeEEEEEcCCC
Confidence            999999999999843

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.51  E-value=3.5e-14  Score=130.98  Aligned_cols=79  Identities=28%  Similarity=0.475  Sum_probs=75.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|++||.|.        .|+|+.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~  106 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSIN--------RITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT  106 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEE--------EEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence            58999999999999999999999999999        7999999888999999999999999999999 89999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |+|.+++.
T Consensus       107 l~V~~a~~  114 (124)
T 2jwn_A          107 IKVLPKRT  114 (124)
T ss_dssp             CEEEESSC
T ss_pred             EEEEECCC
Confidence            99999984

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.51  E-value=2e-14  Score=128.74  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             CCCCEEEEcCCCCCC------CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         498 QENTKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~------t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ...++|||+|||..+      |+++|+++|++||.|.        .|.|+  ..+|.++|||||+|.+.++|..|+..||
T Consensus        13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~--------~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~   82 (105)
T 2nlw_A           13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--------NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD   82 (105)
T ss_dssp             SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE--------EEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred             CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE--------EEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence            346899999999999      7899999999999999        78887  3568999999999999999999999999


Q ss_pred             CceecCe-EEEEEEcc
Q psy2160         572 GYEIRGK-KIKVERAK  586 (773)
Q Consensus       572 g~~i~g~-~i~V~~a~  586 (773)
                      |..|.|+ +|+|.+|.
T Consensus        83 g~~~~g~~~l~V~~a~   98 (105)
T 2nlw_A           83 GYKLDKQHTFRVNLFT   98 (105)
T ss_dssp             SEECSTTCEEEEECSC
T ss_pred             CcccCCCceEEEEEcc
Confidence            9999998 99999987

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.51  E-value=2.7e-14  Score=130.68  Aligned_cols=79  Identities=20%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCc---ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ...++|||+|||.++|+++|+++|+.||.   |.        .|+|+++.. |+++|||||+|.+.++|.+||. |||..
T Consensus        15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~--------~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~   84 (118)
T 2db1_A           15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA--------GVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES   84 (118)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG--------GEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce--------eEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence            45789999999999999999999999999   66        699999987 9999999999999999999998 99999


Q ss_pred             ecCeEEEEEEcc
Q psy2160         575 IRGKKIKVERAK  586 (773)
Q Consensus       575 i~g~~i~V~~a~  586 (773)
                      |.|+.|.|.++.
T Consensus        85 ~~gr~i~V~~a~   96 (118)
T 2db1_A           85 MGHRYIEVFKSH   96 (118)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCeEEEEEECC
Confidence            999999999987

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=5.5e-14  Score=124.72  Aligned_cols=77  Identities=21%  Similarity=0.453  Sum_probs=71.1

Q ss_pred             cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      .....++|||+|||.++|+++|+++|+.||.|.        +|++.      +++|||||+|.+.++|..|+..|||..|
T Consensus        23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~   88 (101)
T 2la4_A           23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFIL--------DFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF   88 (101)
T ss_dssp             SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCS--------EEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEE--------EEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence            344578999999999999999999999999998        78887      2489999999999999999999999999


Q ss_pred             cCeEEEEEEcc
Q psy2160         576 RGKKIKVERAK  586 (773)
Q Consensus       576 ~g~~i~V~~a~  586 (773)
                      .|+.|+|.+|+
T Consensus        89 ~g~~l~V~~a~   99 (101)
T 2la4_A           89 QGRNLRTGWGK   99 (101)
T ss_dssp             TTEECCCCBCC
T ss_pred             CCeEEEEEecc
Confidence            99999999987

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=3.3e-14  Score=129.57  Aligned_cols=80  Identities=21%  Similarity=0.348  Sum_probs=76.1

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..||.. ++..|.|+.
T Consensus        27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~   97 (116)
T 1x4b_A           27 FRKLFIGGLSFETTEESLRNYYEQWGKLT--------DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV   97 (116)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCS--------EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence            58999999999999999999999999998        799999998999999999999999999999987 999999999


Q ss_pred             EEEEEcccc
Q psy2160         580 IKVERAKFT  588 (773)
Q Consensus       580 i~V~~a~~~  588 (773)
                      |+|.+|...
T Consensus        98 l~V~~a~~~  106 (116)
T 1x4b_A           98 VEPKRAVAR  106 (116)
T ss_dssp             EEEECCSSC
T ss_pred             EEEEECCCC
Confidence            999999843

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=3.4e-14  Score=129.20  Aligned_cols=82  Identities=23%  Similarity=0.340  Sum_probs=71.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |.+..+..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~   95 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK   95 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSS--------SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccc--------eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            6799999999999999999999999999954        22222222599999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        96 ~l~v~~a~~~  105 (115)
T 2cpx_A           96 ILVIEFGKNK  105 (115)
T ss_dssp             BCEEEECCCC
T ss_pred             EEEEEEccCC
Confidence            9999998743

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.4e-14  Score=131.76  Aligned_cols=78  Identities=23%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcc----cccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLV----MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I----~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      ..++|||+|||+++|+++|+++|++||.|    ..        |+|+++. +|+++|||||+|.+.++|.+||+. |+..
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~--------v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~   91 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG--------ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDL   91 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG--------EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCe
Confidence            56899999999999999999999999986    45        9999996 599999999999999999999985 9999


Q ss_pred             ecCeEEEEEeec
Q psy2160         290 IRGKKIKVERAK  301 (773)
Q Consensus       290 l~g~~I~V~~A~  301 (773)
                      |.|+.|.|..|.
T Consensus        92 l~gR~i~V~~a~  103 (123)
T 2dha_A           92 LGKRYIELFRST  103 (123)
T ss_dssp             SSSCEECCEEEC
T ss_pred             eCCeEEEEEECC
Confidence            999999998775

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.51  E-value=9.9e-15  Score=136.95  Aligned_cols=81  Identities=26%  Similarity=0.449  Sum_probs=78.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~  117 (135)
T 2lea_A           46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR  117 (135)
T ss_dssp             GCCCEEEECCCSSCHHHHHHHHHGGGSCCSE--------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            7799999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|+.
T Consensus       118 ~l~V~~a~~  126 (135)
T 2lea_A          118 ELRVQMARY  126 (135)
T ss_dssp             CCEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999874

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.51  E-value=6.2e-14  Score=126.23  Aligned_cols=81  Identities=23%  Similarity=0.398  Sum_probs=74.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|..+   +.++|||||+|.+.++|..||+.||+..|.
T Consensus        19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   87 (109)
T 1x4a_A           19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--------DIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD   87 (109)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34678999999999999999999999999998        7888655   557999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|+..
T Consensus        88 g~~l~V~~a~~~   99 (109)
T 1x4a_A           88 GYRLRVEFPRSG   99 (109)
T ss_dssp             TEECEEECCCCC
T ss_pred             CeEEEEEEcccC
Confidence            999999999843

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=7.3e-14  Score=124.39  Aligned_cols=81  Identities=20%  Similarity=0.253  Sum_probs=75.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++.+|.++|||||+|.+.++|..||.  ++..|.
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~   81 (103)
T 2cqg_A           12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL--------MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID   81 (103)
T ss_dssp             CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET
T ss_pred             cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC
Confidence            34578999999999999999999999999999        79999999889999999999999999999997  578999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.++..
T Consensus        82 g~~l~v~~a~~   92 (103)
T 2cqg_A           82 GRWCDCKLPNS   92 (103)
T ss_dssp             TEEEEEECCCT
T ss_pred             CeEEEEEecCC
Confidence            99999999984

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.50  E-value=2.8e-14  Score=132.14  Aligned_cols=78  Identities=18%  Similarity=0.345  Sum_probs=71.2

Q ss_pred             CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      .+++|||+|||+.+++++|+    ++|++||.|..        |.+.+   +|+++|||||+|.+.++|..||..|||..
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~--------v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~   96 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILD--------IVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYP   96 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE--------EEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence            67899999999999999876    69999999987        77753   48999999999999999999999999999


Q ss_pred             ecCeEEEEEeecc
Q psy2160         290 IRGKKIKVERAKF  302 (773)
Q Consensus       290 l~g~~I~V~~A~~  302 (773)
                      |.|++|+|.+|..
T Consensus        97 l~gr~l~V~~a~~  109 (127)
T 2a3j_A           97 FQGNPLVITFSET  109 (127)
T ss_dssp             CTTSCCEEEECCC
T ss_pred             eCCCEEEEEEccC
Confidence            9999999999873

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=4e-14  Score=129.04  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC--ceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG--YEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng--~~l~  291 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        |+|+++      +|||||+|.+.++|..||+.|++  ..|.
T Consensus        30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~   95 (119)
T 2ad9_A           30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR   95 (119)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence            5789999999999999999999999999998        999865      68999999999999999998874  6799


Q ss_pred             CeEEEEEeeccc
Q psy2160         292 GKKIKVERAKFT  303 (773)
Q Consensus       292 g~~I~V~~A~~~  303 (773)
                      |++|+|.+|+.+
T Consensus        96 Gr~l~V~~a~~k  107 (119)
T 2ad9_A           96 GQPIYIQFSNHK  107 (119)
T ss_dssp             TBCCEEEECSSS
T ss_pred             CeEEEEEEccCC
Confidence            999999998743

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=123.58  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=67.1

Q ss_pred             CCEEEEcCCCCCC------CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         500 NTKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       500 ~~~l~V~nLp~~~------t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      .++|||+|||.++      |+++|+++|++||.|.        .|.|+  +.+|.++|||||+|.+.++|..|+..|||.
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~--------~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~   70 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--------NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY   70 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE--------EEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE--------EEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence            3789999999999      7899999999999998        78877  356899999999999999999999999999


Q ss_pred             eecCe-EEEE
Q psy2160         574 EIRGK-KIKV  582 (773)
Q Consensus       574 ~i~g~-~i~V  582 (773)
                      .|.|+ +|+|
T Consensus        71 ~~~g~~~l~V   80 (81)
T 2krb_A           71 KLDKQHTFRV   80 (81)
T ss_dssp             CCSSSSCCCC
T ss_pred             ccCCceeEEe
Confidence            99999 8876

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.50  E-value=2.2e-14  Score=129.76  Aligned_cols=83  Identities=20%  Similarity=0.298  Sum_probs=76.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHH---HHHHhcCcceeccCCCceEEEEEecCCCC---CCcceEEEEeCChHHHHHHHHHhC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPYTK---DFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~---~~F~~~G~I~~~~~~~~~~i~l~~d~~tg---~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ...++|||+|||+++|+++|+   ++|++||.|.        .|+|+.+..++   .++|||||+|.+.++|.+||..||
T Consensus        13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~--------~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln   84 (111)
T 2cpi_A           13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH--------KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN   84 (111)
T ss_dssp             CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE--------EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE--------EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence            456899999999999999999   9999999999        79999988644   456999999999999999999999


Q ss_pred             CceecCeEEEEEEcccc
Q psy2160         572 GYEIRGKKIKVERAKFT  588 (773)
Q Consensus       572 g~~i~g~~i~V~~a~~~  588 (773)
                      |..|.|++|+|.+|...
T Consensus        85 g~~~~gr~l~V~~a~~k  101 (111)
T 2cpi_A           85 NVVVDGRTLKASLGTTK  101 (111)
T ss_dssp             TEEETTEEEEEESCCCC
T ss_pred             CCEECCEEEEEEecccc
Confidence            99999999999999843

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.50  E-value=2.6e-14  Score=133.90  Aligned_cols=79  Identities=18%  Similarity=0.274  Sum_probs=74.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCc---ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ...++|||+|||+++|+++|+++|+.||.   |.        .|+|++|+. |+++|||||+|.+.++|.+||. |||..
T Consensus        42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~--------~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~  111 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA--------GVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES  111 (136)
T ss_dssp             CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST--------TEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee--------EEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence            45789999999999999999999999999   66        699999988 9999999999999999999998 99999


Q ss_pred             ecCeEEEEEEcc
Q psy2160         575 IRGKKIKVERAK  586 (773)
Q Consensus       575 i~g~~i~V~~a~  586 (773)
                      |.|+.|.|.+|.
T Consensus       112 l~gr~i~V~~a~  123 (136)
T 2hgl_A          112 MGHRYIEVFKSH  123 (136)
T ss_dssp             SSSSEEEEEECC
T ss_pred             ECCEEEEEEECC
Confidence            999999999987

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.50  E-value=4.6e-14  Score=128.36  Aligned_cols=78  Identities=22%  Similarity=0.378  Sum_probs=73.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |.|+++   +.++|||||+|.+.++|..|+..|||..|.|+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   75 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR   75 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            6799999999999999999999999999998        999875   55699999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|+|.+|..
T Consensus        76 ~l~v~~a~~   84 (115)
T 3lqv_A           76 YLVVLYYNA   84 (115)
T ss_dssp             BCEEEECCH
T ss_pred             EEEEEEecC
Confidence            999998863

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.50  E-value=3.9e-14  Score=125.89  Aligned_cols=78  Identities=22%  Similarity=0.345  Sum_probs=74.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|+++. +|.++|||||+|.+.++|..||.  ++..|.|+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~   76 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE--------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK   76 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence            6799999999999999999999999999998        9999999 69999999999999999999998  99999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.++..
T Consensus        77 ~l~v~~a~~   85 (102)
T 2xs2_A           77 KLKLGPAIR   85 (102)
T ss_dssp             ECEEEEEEE
T ss_pred             EEEEEECCc
Confidence            999998874

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.50  E-value=1.1e-13  Score=125.30  Aligned_cols=96  Identities=50%  Similarity=0.997  Sum_probs=89.1

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  425 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G  425 (773)
                      +..+++|+|+||+.+.++..++..+.+++++|+++|++||.|..|.+.+++++|+|||.|.+.++|.+|+..|||+.|+|
T Consensus        12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g   91 (112)
T 2dit_A           12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG   91 (112)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred             CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            56689999999999988888889999999999999999999999988888899999999999999999999999999999


Q ss_pred             eeEEEEecCCCccccc
Q psy2160         426 RQITAETWDGKTRYKI  441 (773)
Q Consensus       426 r~I~v~~~~~~~~~~~  441 (773)
                      ++|.|.++.++.+|..
T Consensus        92 r~l~v~~a~~~~~~~~  107 (112)
T 2dit_A           92 RQITAQAWDGTTDYQS  107 (112)
T ss_dssp             EECEEEECCSCCCSSC
T ss_pred             cEEEEEEeCCCCCccc
Confidence            9999999988876654

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.50  E-value=6e-14  Score=127.56  Aligned_cols=79  Identities=23%  Similarity=0.404  Sum_probs=73.7

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      +...++|||+|||.++|+++|+++|+.||.|.        .|.|+.+   +.++|||||+|.+.++|..|+..|||..|.
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   73 (115)
T 3lqv_A            5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIR--------QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS   73 (115)
T ss_dssp             TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34578999999999999999999999999999        7999877   446999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|.|.+|.
T Consensus        74 g~~l~v~~a~   83 (115)
T 3lqv_A           74 NRYLVVLYYN   83 (115)
T ss_dssp             SCBCEEEECC
T ss_pred             CeEEEEEEec
Confidence            9999999998

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.49  E-value=6e-14  Score=125.35  Aligned_cols=85  Identities=27%  Similarity=0.407  Sum_probs=70.8

Q ss_pred             CcEEEEecCC-Ccccccc----------c---hhhHHHHHHHHHHHH-hcCCceeEEEecC---CCCCcEEEEEecCHHH
Q psy2160         634 ESVIIVKNLF-DPALFDK----------D---VTLILEYQQDLREEC-SKCGHVKKVVLHD---KHPEGVAQIFFKEPEA  695 (773)
Q Consensus       634 ~~~l~ikNl~-~~~~~~~----------d---~~~~~~l~edl~~~f-~~fG~V~~v~i~~---~~~~G~afV~F~~~e~  695 (773)
                      ++||+|+||+ +|.....          +   ...+.+|.++|+++| ++||.|.+|.|..   +.++|+|||.|.++++
T Consensus         1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~   80 (104)
T 1jmt_A            1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED   80 (104)
T ss_dssp             CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred             CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence            4799999999 4542211          0   124668889999999 9999999999875   3578999999999999


Q ss_pred             HHHHHHHhCCceeCCeEEEEEEe
Q psy2160         696 ADACRELLNGRWFGQRQITAETW  718 (773)
Q Consensus       696 A~~Ai~~lnGr~f~Gr~l~v~~~  718 (773)
                      |.+|+..|||+.|+||+|.|.|+
T Consensus        81 A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           81 AEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHHHHHCCCEECCEEEEEEEc
Confidence            99999999999999999999885

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.49  E-value=8.8e-14  Score=122.64  Aligned_cols=74  Identities=20%  Similarity=0.360  Sum_probs=69.2

Q ss_pred             CCccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         213 EESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       213 ~~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      +.+++|||+|||. ++|+++|+++|++||.|..        |+|.        +|||||+|.+.++|..|+..|||..|.
T Consensus        20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~   83 (97)
T 2xnq_A           20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF   83 (97)
T ss_dssp             CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE--------EEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            4889999999998 9999999999999999998        8872        789999999999999999999999999


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|++|+.
T Consensus        84 g~~l~V~~a~~   94 (97)
T 2xnq_A           84 GKKLILEVSSS   94 (97)
T ss_dssp             TEECEEEECCC
T ss_pred             CEEEEEEecCC
Confidence            99999998863

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.49  E-value=5.5e-14  Score=127.54  Aligned_cols=77  Identities=17%  Similarity=0.138  Sum_probs=70.5

Q ss_pred             cEEEEcCC----CCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecC----hHH----HHHHHH
Q psy2160         216 TKVYVSNL----PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK----KES----VDLALS  283 (773)
Q Consensus       216 ~~VyV~nL----P~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~----~es----A~~Al~  283 (773)
                      +.|||+||    |+.+++.+|+++|+.||.|.+        +.++.|+.||.++|||||+|.+    +++    |..|+.
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~--------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~   74 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH--------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR   74 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE--------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence            78999999    999999999999999999999        9999999999999999999996    433    888988


Q ss_pred             --HcCCceecCeEEEEEee
Q psy2160         284 --ILDGYEIRGKKIKVERA  300 (773)
Q Consensus       284 --~lng~~l~g~~I~V~~A  300 (773)
                        .|||..|.|++|+|..-
T Consensus        75 ~~~lng~~I~Gr~irV~ln   93 (136)
T 2j8a_A           75 KHESSGCFIMGFKFEVILN   93 (136)
T ss_dssp             HTTTTCEEETTEEEEEEEC
T ss_pred             HhhhcCCeecCcEEEEEEC
Confidence              78999999999999753

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.49  E-value=1.2e-14  Score=129.13  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=71.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..         .++++..+|.++|||||+|.+.++|..||+ ||+..|.|+
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~   85 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKND---------LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN   85 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT---------CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce---------EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence            6789999999999999999999999999885         344555569999999999999999999999 999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        86 ~l~V~~a~~   94 (101)
T 1fj7_A           86 EIKLEKPKG   94 (101)
T ss_dssp             CCEEECCSC
T ss_pred             EEEEEEcCC
Confidence            999998863

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.49  E-value=2.5e-14  Score=127.39  Aligned_cols=79  Identities=13%  Similarity=0.208  Sum_probs=73.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.+         .|+|++|+ +|+++|||||+|.+.++|.+|| .+|+..|.|
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~---------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g   81 (102)
T 1wez_A           13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM---------RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQH   81 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCCS---------EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCce---------EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECC
Confidence            456899999999999999999999999955         49999998 7999999999999999999999 589999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|..+..
T Consensus        82 r~i~V~~~~~   91 (102)
T 1wez_A           82 RYVELFLNST   91 (102)
T ss_dssp             SCCEEEEECC
T ss_pred             cEEEEEECCC
Confidence            9999998874

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.49  E-value=1.5e-13  Score=122.94  Aligned_cols=86  Identities=26%  Similarity=0.327  Sum_probs=78.0

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC------CCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK------HPEGVAQIFFKEPEAADACRELLNGR  421 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~------~~~G~afV~F~~~e~A~~Ai~~lng~  421 (773)
                      .+++|+|+||++|.++.++.. ..+++++|+++|++||.|.+|.|+..      ++.|+|||+|.+.++|.+|+..|||+
T Consensus         4 ps~vl~L~Nm~~~~~l~~d~~-~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~   82 (105)
T 3v4m_A            4 PTEVLCLMNMVLPEELLDDEE-YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR   82 (105)
T ss_dssp             CCSEEEEESSCCGGGSSSHHH-HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCHHHccChHH-HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence            478999999999999876544 68999999999999999999998753      36899999999999999999999999


Q ss_pred             ccCCeeEEEEecC
Q psy2160         422 WFGQRQITAETWD  434 (773)
Q Consensus       422 ~~~Gr~I~v~~~~  434 (773)
                      .|+||+|.|.+++
T Consensus        83 ~f~GR~i~v~~~~   95 (105)
T 3v4m_A           83 KFANRVVVTKYCD   95 (105)
T ss_dssp             EETTEECEEEEEC
T ss_pred             EeCCCEEEEEEeC
Confidence            9999999999875

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.49  E-value=5.3e-14  Score=130.27  Aligned_cols=79  Identities=16%  Similarity=0.342  Sum_probs=71.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         498 QENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      .++++|||+|||+.+++++|+    ++|++||.|.        +|.+..   +|.++|||||+|.+.++|..|+..|||.
T Consensus        27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~--------~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~   95 (127)
T 2a3j_A           27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDIL--------DIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY   95 (127)
T ss_dssp             SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--------EEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE--------EEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence            457899999999999999866    7999999998        677753   4788999999999999999999999999


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|++|+|.+|+.
T Consensus        96 ~l~gr~l~V~~a~~  109 (127)
T 2a3j_A           96 PFQGNPLVITFSET  109 (127)
T ss_dssp             CCTTSCCEEEECCC
T ss_pred             EeCCCEEEEEEccC
Confidence            99999999999983

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=9.5e-14  Score=123.17  Aligned_cols=78  Identities=28%  Similarity=0.358  Sum_probs=71.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|           +++.+. +|+++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-----------~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   81 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATEETLQEVFEKATFI-----------KVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGR   81 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHCSSCSEE-----------ECCBCS-SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCEE-----------EEEECC-CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence            67999999999999999999999999964           456664 499999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        82 ~l~v~~a~~~   91 (101)
T 2fc9_A           82 AIRLELQGPR   91 (101)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEEcCCC
Confidence            9999998754

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=6.1e-14  Score=124.49  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc--CCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l--ng~~l~  291 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |.|+++      +|||||+|.+.++|..|++.|  ++..|.
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~   79 (101)
T 2cq1_A           14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR   79 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence            6689999999999999999999999999998        888754      789999999999999999976  567899


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|.+|..
T Consensus        80 Gr~l~V~~a~~   90 (101)
T 2cq1_A           80 NQPIYIQYSNH   90 (101)
T ss_dssp             TEECEEEECSC
T ss_pred             CcEEEEEEcCc
Confidence            99999999874

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.48  E-value=7e-14  Score=126.26  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=70.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      +...++|||+|||.++|+++|+++|++|| .|.        .|.|+.+    .++|||||+|.+.++|..||+.|||..|
T Consensus        25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~--------~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l   92 (111)
T 2jvr_A           25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETT--------FSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF   92 (111)
T ss_dssp             CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCS--------EEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeE--------EEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence            34578999999999999999999999999 887        6777533    4699999999999999999999999999


Q ss_pred             cCeEEEEEEcc
Q psy2160         576 RGKKIKVERAK  586 (773)
Q Consensus       576 ~g~~i~V~~a~  586 (773)
                      .|+.|+|.++.
T Consensus        93 ~Gr~i~V~~a~  103 (111)
T 2jvr_A           93 RGSVITVERDD  103 (111)
T ss_dssp             TTEEEEEEESC
T ss_pred             CCeEEEEEECC
Confidence            99999999987

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=122.69  Aligned_cols=79  Identities=25%  Similarity=0.329  Sum_probs=73.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.|+   .        |+++++..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~   82 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESFDGSV---R--------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN   82 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTSTTCS---E--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCccCHHHHHHHhcCCe---E--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            779999999999999999999999773   3        88899988899999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|+..
T Consensus        83 ~l~V~~a~~~   92 (102)
T 2fc8_A           83 KVTLDWAKPK   92 (102)
T ss_dssp             ECEEEECCCC
T ss_pred             EEEEEEecCC
Confidence            9999998743

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=3.7e-14  Score=126.73  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=74.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceE-EEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK-IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~-i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        . |+|+.+ .+|+++|||||+|.++++|..||.. |+..|.
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~   82 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP--------NGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG   82 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEE--------EEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--------eeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence            4578999999999999999999999999997        4 888888 6799999999999999999999986 999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.++..
T Consensus        83 gr~i~v~~~~~   93 (104)
T 1wg5_A           83 HRYIEIFKSSR   93 (104)
T ss_dssp             SSCCEEEEECT
T ss_pred             CcEEEEEECCH
Confidence            99999998873

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=8.3e-14  Score=126.96  Aligned_cols=78  Identities=17%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC--ce
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG--YE  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng--~~  574 (773)
                      ..+.++|||+|||+++|+++|+++|++||.|.        +|+|+++      +|||||+|.+.++|..|+..|++  ..
T Consensus        28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~--------~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~   93 (119)
T 2ad9_A           28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV   93 (119)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCC--------EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence            44678999999999999999999999999999        7999865      79999999999999999999984  68


Q ss_pred             ecCeEEEEEEcccc
Q psy2160         575 IRGKKIKVERAKFT  588 (773)
Q Consensus       575 i~g~~i~V~~a~~~  588 (773)
                      |.|++|+|.+|+..
T Consensus        94 l~Gr~l~V~~a~~k  107 (119)
T 2ad9_A           94 LRGQPIYIQFSNHK  107 (119)
T ss_dssp             BTTBCCEEEECSSS
T ss_pred             ECCeEEEEEEccCC
Confidence            99999999999843

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.48  E-value=2.5e-14  Score=127.02  Aligned_cols=77  Identities=10%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc--
Q psy2160         497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--  573 (773)
Q Consensus       497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~--  573 (773)
                      ..+.++|||+|||. ++|+++|+++|++||.|.        +|.|+++      +|||||+|.+.++|..||+.||+.  
T Consensus        12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~   77 (102)
T 1x4d_A           12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS--------NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPA   77 (102)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE--------EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE--------EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence            34678999999999 999999999999999999        7988865      589999999999999999999864  


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|++|+|.+|+.
T Consensus        78 ~~~Gr~l~V~~a~~   91 (102)
T 1x4d_A           78 LVFGKPVRVHLSQK   91 (102)
T ss_dssp             EETTEECEEEEECC
T ss_pred             eECCcEEEEEECCC
Confidence            59999999999983

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=9.7e-14  Score=123.09  Aligned_cols=80  Identities=25%  Similarity=0.319  Sum_probs=72.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.           ++.+ .+|.++|||||+|.+.++|.+||..|||..|.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~   79 (101)
T 2fc9_A           12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE   79 (101)
T ss_dssp             SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            34679999999999999999999999999774           5556 45889999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.++...
T Consensus        80 g~~l~v~~a~~~   91 (101)
T 2fc9_A           80 GRAIRLELQGPR   91 (101)
T ss_dssp             TEEEEEEECSSC
T ss_pred             CeEEEEEEcCCC
Confidence            999999999854

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.3e-13  Score=124.18  Aligned_cols=76  Identities=22%  Similarity=0.416  Sum_probs=71.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++      +|||||+|.+.++|..||..||+..|.|+
T Consensus        24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~   89 (109)
T 1x4g_A           24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGH   89 (109)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence            6799999999999999999999999999998        999865      68999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|+..
T Consensus        90 ~l~v~~a~~~   99 (109)
T 1x4g_A           90 VVKCYWGKES   99 (109)
T ss_dssp             ECEEECCCCC
T ss_pred             EEEEEecCCC
Confidence            9999998743

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.48  E-value=1.8e-14  Score=133.08  Aligned_cols=81  Identities=14%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .+.++.+..+|+++|||||+|.+.++|..||. |||..|.
T Consensus        22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~   92 (124)
T 1wel_A           22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVE--------DSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG   92 (124)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCT--------TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc--------ceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence            34568999999999999999999999999998        45566666679999999999999999999998 9999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|.|.+|.
T Consensus        93 gr~i~V~~a~  102 (124)
T 1wel_A           93 NRFIQVHPIT  102 (124)
T ss_dssp             TSCBEEEEEC
T ss_pred             CcEEEEEECC
Confidence            9999999998

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=8e-14  Score=125.52  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=71.5

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||+++|+++|+++|+.| .|.        .|+|+.|+. |+++|||||+|.++++|.+|| .||+..|.|+.
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~--------~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~   84 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVD--------AVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY   84 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCC--------EEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-Cee--------EEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence            4699999999999999999999999 666        699999987 999999999999999999999 69999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |.|..|.
T Consensus        85 i~V~~a~   91 (109)
T 2dnn_A           85 VEVSPAT   91 (109)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999887

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.6e-14  Score=118.90  Aligned_cols=75  Identities=15%  Similarity=0.305  Sum_probs=69.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-CCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i~  576 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+++++      +|||||+|.+.++|..|+..| ||..+.
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--------~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~   75 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR--------TITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN   75 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE--------EEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe--------EEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence            4578999999999999999999999999998        7888864      789999999999999999988 999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|+|.+|+
T Consensus        76 g~~l~v~~ak   85 (85)
T 2ytc_A           76 GRRLNVKWGR   85 (85)
T ss_dssp             TEECCEEECC
T ss_pred             CCEEEEEecC
Confidence            9999999975

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=119.50  Aligned_cols=74  Identities=24%  Similarity=0.421  Sum_probs=69.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|.        +|||||+|.+.++|..|+..||+..|.|+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~   70 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLE--------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV   70 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHHHTSSCEEE--------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence            7899999999999999999999999999998        8887        57999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.++...
T Consensus        71 ~l~v~~a~~~   80 (90)
T 2dnq_A           71 NINVEASKNK   80 (90)
T ss_dssp             BCEEECSSCC
T ss_pred             EEEEEECCCC
Confidence            9999998743

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.47  E-value=9.3e-14  Score=126.02  Aligned_cols=78  Identities=18%  Similarity=0.150  Sum_probs=71.9

Q ss_pred             CEEEEcCC----CCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCC----hHH----HHHHHH
Q psy2160         501 TKVYVSNL----PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK----KES----VDLALS  568 (773)
Q Consensus       501 ~~l~V~nL----p~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~----~e~----A~~Ai~  568 (773)
                      +.|||+||    |+.+++.+|+++|+.||.|.        .|.++.|+.||+++|||||+|.+    +++    |.+|+.
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~--------~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~   74 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS--------HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR   74 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS--------EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence            68999999    99999999999999999999        89999999999999999999996    444    899998


Q ss_pred             --HhCCceecCeEEEEEEcc
Q psy2160         569 --ILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       569 --~lng~~i~g~~i~V~~a~  586 (773)
                        .|||..|.|++|+|..-.
T Consensus        75 ~~~lng~~I~Gr~irV~ln~   94 (136)
T 2j8a_A           75 KHESSGCFIMGFKFEVILNK   94 (136)
T ss_dssp             HTTTTCEEETTEEEEEEECC
T ss_pred             HhhhcCCeecCcEEEEEECc
Confidence              789999999999999866

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.21  E-value=3.5e-15  Score=136.15  Aligned_cols=90  Identities=30%  Similarity=0.451  Sum_probs=80.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|......+.|.|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   84 (116)
T 2lcw_A            5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG   84 (116)
Confidence            35689999999999999999999999999984333344449999998889999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|.+|..
T Consensus        85 ~~l~V~~a~~   94 (116)
T 2lcw_A           85 NPIKVSFATR   94 (116)
Confidence            9999999984

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=7.3e-14  Score=123.90  Aligned_cols=74  Identities=22%  Similarity=0.478  Sum_probs=69.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|.      +++|||||+|.+.++|..|+..|||..|.|+
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   91 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR   91 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            6799999999999999999999999999998        8887      3578999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|+
T Consensus        92 ~l~V~~a~   99 (101)
T 2la4_A           92 NLRTGWGK   99 (101)
T ss_dssp             ECCCCBCC
T ss_pred             EEEEEecc
Confidence            99998876

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.47  E-value=4.1e-14  Score=124.45  Aligned_cols=78  Identities=19%  Similarity=0.432  Sum_probs=72.8

Q ss_pred             CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160         214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  289 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~  289 (773)
                      .+++|||+|||.++|+++|+    ++|++||.|..        |++.+   +|.++|||||+|.+.++|..|+..|||..
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~   75 (97)
T 1nu4_A            7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP   75 (97)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE--------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence            77999999999999999999    99999999998        88764   48889999999999999999999999999


Q ss_pred             ecCeEEEEEeecc
Q psy2160         290 IRGKKIKVERAKF  302 (773)
Q Consensus       290 l~g~~I~V~~A~~  302 (773)
                      |.|++|+|.+|..
T Consensus        76 ~~g~~l~v~~a~~   88 (97)
T 1nu4_A           76 FYDKPMRIQYAKT   88 (97)
T ss_dssp             ETTEECEEEECSS
T ss_pred             ECCcEEEEEEccC
Confidence            9999999999873

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=1e-13  Score=123.01  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh--CCce
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYE  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l--ng~~  574 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        .|.|+++      +|||||+|.+.++|..|++.|  ++..
T Consensus        12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~   77 (101)
T 2cq1_A           12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVT--------NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH   77 (101)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence            34678999999999999999999999999998        7888754      799999999999999999977  5788


Q ss_pred             ecCeEEEEEEccc
Q psy2160         575 IRGKKIKVERAKF  587 (773)
Q Consensus       575 i~g~~i~V~~a~~  587 (773)
                      |.|++|.|.+|+.
T Consensus        78 ~~Gr~l~V~~a~~   90 (101)
T 2cq1_A           78 LRNQPIYIQYSNH   90 (101)
T ss_dssp             ETTEECEEEECSC
T ss_pred             ECCcEEEEEEcCc
Confidence            9999999999984

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.7e-13  Score=120.71  Aligned_cols=76  Identities=24%  Similarity=0.363  Sum_probs=69.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|.         +.++.    +.++|||||+|.+.++|..||..|||..|.|+
T Consensus        18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   84 (97)
T 2e5j_A           18 LAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD   84 (97)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred             CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            679999999999999999999999999996         35554    56789999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        85 ~l~V~~a~~   93 (97)
T 2e5j_A           85 TLRVALARQ   93 (97)
T ss_dssp             CCEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999874

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.47  E-value=6.7e-14  Score=127.04  Aligned_cols=81  Identities=20%  Similarity=0.393  Sum_probs=75.9

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee-
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i-  575 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|+|+.++ +|.++|||||+|.+.++|..|+..|||..| 
T Consensus        22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   92 (114)
T 1x5o_A           22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVI--------STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIK   92 (114)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence            34578999999999999999999999999999        79999998 799999999999999999999999999999 


Q ss_pred             -------cCeEEEEEEcc
Q psy2160         576 -------RGKKIKVERAK  586 (773)
Q Consensus       576 -------~g~~i~V~~a~  586 (773)
                             .|++|.|.+|.
T Consensus        93 ~~~~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           93 TPPGVSAPTEPLLCKFSG  110 (114)
T ss_dssp             CCTTSCCCSSCBEEEECC
T ss_pred             CCccccCCCCceeEEccC
Confidence                   57889999987

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.47  E-value=5.5e-14  Score=143.96  Aligned_cols=80  Identities=23%  Similarity=0.325  Sum_probs=76.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcC--cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..++|||+|||.++|+++|+++|+.||  .|.        .|+|++|+.+|+++|||||+|.+.++|.+||..|||..|.
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~--------~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~  138 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL--------EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH  138 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE--------EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence            467999999999999999999999999  888        7999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|+|.+|.
T Consensus       139 Gr~l~V~~a~  148 (229)
T 3q2s_C          139 GQNPVVTPVN  148 (229)
T ss_dssp             TBCCEEEECC
T ss_pred             CEEeEEEECC
Confidence            9999999997

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.47  E-value=3.2e-13  Score=121.47  Aligned_cols=74  Identities=26%  Similarity=0.417  Sum_probs=70.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|+.+       |||||+|.+.++|..||+.||+..|.| 
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~   78 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH   78 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence            6799999999999999999999999999998        999876       799999999999999999999999999 


Q ss_pred             ----eEEEEEeecc
Q psy2160         293 ----KKIKVERAKF  302 (773)
Q Consensus       293 ----~~I~V~~A~~  302 (773)
                          ++|+|.+|..
T Consensus        79 ~~~~~~i~V~~a~~   92 (108)
T 1x4c_A           79 EGETAYIRVKVDGP   92 (108)
T ss_dssp             TSCEEEEEEEESSC
T ss_pred             cCcceEEEEEeCCC
Confidence                9999999874

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.47  E-value=5.6e-14  Score=123.60  Aligned_cols=80  Identities=20%  Similarity=0.442  Sum_probs=73.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ..+.++|||+|||.++|+++|+    ++|++||.|.        .|.+..   +|.++|||||+|.+.++|..|+..|||
T Consensus         5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~--------~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g   73 (97)
T 1nu4_A            5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL--------DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG   73 (97)
T ss_dssp             -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE--------EEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE--------EEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence            3467999999999999999999    9999999998        688764   367899999999999999999999999


Q ss_pred             ceecCeEEEEEEccc
Q psy2160         573 YEIRGKKIKVERAKF  587 (773)
Q Consensus       573 ~~i~g~~i~V~~a~~  587 (773)
                      ..|.|+.|+|.+|..
T Consensus        74 ~~~~g~~l~v~~a~~   88 (97)
T 1nu4_A           74 FPFYDKPMRIQYAKT   88 (97)
T ss_dssp             CEETTEECEEEECSS
T ss_pred             CEECCcEEEEEEccC
Confidence            999999999999983

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=118.50  Aligned_cols=75  Identities=15%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc-CCceec
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIR  291 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~  291 (773)
                      +.+++|||+|||.++|+++|+++|++||.|..        |++.++      +|||||+|.+.++|..|+..| ++..+.
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~   75 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--------ITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN   75 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--------EEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--------EEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence            37799999999999999999999999999998        898863      689999999999999999988 999999


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |++|+|++|+
T Consensus        76 g~~l~v~~ak   85 (85)
T 2ytc_A           76 GRRLNVKWGR   85 (85)
T ss_dssp             TEECCEEECC
T ss_pred             CCEEEEEecC
Confidence            9999998874

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.47  E-value=8.7e-14  Score=122.16  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        +     ..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus        15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~--------~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   81 (96)
T 1fjc_A           15 AARTLLAKNLSFNITEDELKEVFEDALEIRL--------V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR   81 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEECC--------E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE--------e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            6799999999999999999999999998875        4     23489999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        82 ~l~v~~a~~   90 (96)
T 1fjc_A           82 SVSLYYTGE   90 (96)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEcCC
Confidence            999999864

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.5e-14  Score=123.34  Aligned_cols=81  Identities=25%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.|+           .|+++.+..+|.++|||||+|.+.++|..||..|||..|.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~-----------~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   80 (102)
T 2fc8_A           12 SQPSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID   80 (102)
T ss_dssp             SCCCSSEEEECCCTTCCHHHHHHTSTTCS-----------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCccCHHHHHHHhcCCe-----------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence            45679999999999999999999999773           3678888888999999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|+..
T Consensus        81 g~~l~V~~a~~~   92 (102)
T 2fc8_A           81 GNKVTLDWAKPK   92 (102)
T ss_dssp             TEECEEEECCCC
T ss_pred             CeEEEEEEecCC
Confidence            999999999843

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.46  E-value=2.4e-14  Score=128.60  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=75.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCc---ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      ....++|||+|||.++|+++|+++|+.||.   |.        .|+|+.++. |+++|||||+|.+.++|.+||. |||.
T Consensus         8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~--------~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~   77 (107)
T 2lmi_A            8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN--------GIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM   77 (107)
T ss_dssp             CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT--------TEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred             CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc--------eEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc
Confidence            346789999999999999999999999998   77        699999988 9999999999999999999998 9999


Q ss_pred             eecCeEEEEEEcc
Q psy2160         574 EIRGKKIKVERAK  586 (773)
Q Consensus       574 ~i~g~~i~V~~a~  586 (773)
                      .|+|+.|.|.+|.
T Consensus        78 ~~~gr~i~V~~a~   90 (107)
T 2lmi_A           78 YMGQRYVEVYEIN   90 (107)
T ss_dssp             CSSSSCCCCEECC
T ss_pred             eeCCeEEEEEECC
Confidence            9999999999987

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.46  E-value=1.3e-14  Score=128.87  Aligned_cols=80  Identities=19%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        . .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|
T Consensus        15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g   84 (101)
T 1fj7_A           15 TTPFNLFIGNLNPNKSVAELKVAISELFAKN--------D-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG   84 (101)
T ss_dssp             SCSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------T-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------e-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence            3578999999999999999999999999997        4 556666678899999999999999999998 99999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.+|..
T Consensus        85 ~~l~V~~a~~   94 (101)
T 1fj7_A           85 NEIKLEKPKG   94 (101)
T ss_dssp             BCCEEECCSC
T ss_pred             cEEEEEEcCC
Confidence            9999999973

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.46  E-value=2.8e-13  Score=122.00  Aligned_cols=79  Identities=23%  Similarity=0.417  Sum_probs=73.2

Q ss_pred             cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      .....++|||+|||.++|+++|+++|++||.|.        .|+|+.+      +|||||+|.+.++|..|+..|||..|
T Consensus        21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~   86 (109)
T 1x4g_A           21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--------EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI   86 (109)
T ss_dssp             SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence            345679999999999999999999999999998        7998866      78999999999999999999999999


Q ss_pred             cCeEEEEEEcccc
Q psy2160         576 RGKKIKVERAKFT  588 (773)
Q Consensus       576 ~g~~i~V~~a~~~  588 (773)
                      .|+.|+|.+|+..
T Consensus        87 ~g~~l~v~~a~~~   99 (109)
T 1x4g_A           87 EGHVVKCYWGKES   99 (109)
T ss_dssp             TTEECEEECCCCC
T ss_pred             CCcEEEEEecCCC
Confidence            9999999999843

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.46  E-value=5.1e-14  Score=129.91  Aligned_cols=78  Identities=26%  Similarity=0.346  Sum_probs=71.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCccc-ccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVM-KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~-~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||+++|+++|+++|+.|+++. .        |+|++|+. |+++|||||+|.+.++|.+||+ +++..|.|
T Consensus        41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~--------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g  110 (126)
T 2hgm_A           41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG--------ITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGH  110 (126)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEE--------EECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECC
Confidence            678999999999999999999999996553 4        99999998 9999999999999999999998 57899999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      +.|.|..+.
T Consensus       111 R~I~V~~a~  119 (126)
T 2hgm_A          111 RYIEVFKSS  119 (126)
T ss_dssp             BCCCCEEEC
T ss_pred             EEEEEEECC
Confidence            999998875

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.46  E-value=1.4e-13  Score=121.26  Aligned_cols=75  Identities=16%  Similarity=0.297  Sum_probs=69.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec--
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR--  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~--  291 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |.+..+      +|||||+|.+.++|..|++.||+..|.  
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~   81 (97)
T 1why_A           16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGP   81 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence            6799999999999999999999999999998        888643      789999999999999999999999999  


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|.+|..
T Consensus        82 g~~l~V~~a~~   92 (97)
T 1why_A           82 DRRLRVDFAKS   92 (97)
T ss_dssp             SCBCEEEECCC
T ss_pred             CcEEEEEECCC
Confidence            99999999874

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=118.50  Aligned_cols=76  Identities=24%  Similarity=0.412  Sum_probs=70.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+        +|||||+|.+.++|..|+..|||..|.
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~   68 (90)
T 2dnq_A            5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVL--------ECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH   68 (90)
T ss_dssp             SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEE--------EEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence            34679999999999999999999999999998        78887        689999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+++..
T Consensus        69 g~~l~v~~a~~~   80 (90)
T 2dnq_A           69 GVNINVEASKNK   80 (90)
T ss_dssp             SCBCEEECSSCC
T ss_pred             CcEEEEEECCCC
Confidence            999999999843

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=8.5e-14  Score=124.30  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--eec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l~  291 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |.|+++      +|||||+|.+.++|..|++.|++.  .|.
T Consensus        14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~   79 (104)
T 1wex_A           14 VSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA   79 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence            6789999999999999999999999999998        888753      689999999999999999988654  589


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|++|..
T Consensus        80 Gr~l~V~~a~~   90 (104)
T 1wex_A           80 GQQAFFNYSTS   90 (104)
T ss_dssp             SSBCEEEECSS
T ss_pred             CEEEEEEEccC
Confidence            99999999874

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=3.5e-14  Score=129.07  Aligned_cols=84  Identities=24%  Similarity=0.400  Sum_probs=72.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.... .   .+++.    +|.++|||||+|.+.++|..|+..|||..|.
T Consensus        22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~-~---~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~   93 (115)
T 2cpx_A           22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP-I---QFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLY   93 (115)
T ss_dssp             CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC-C---EEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE-E---EEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            34678999999999999999999999999984100 0   24443    5889999999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |++|+|.+|...
T Consensus        94 g~~l~v~~a~~~  105 (115)
T 2cpx_A           94 GKILVIEFGKNK  105 (115)
T ss_dssp             SCBCEEEECCCC
T ss_pred             CcEEEEEEccCC
Confidence            999999999843

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=2.3e-13  Score=122.39  Aligned_cols=75  Identities=25%  Similarity=0.422  Sum_probs=70.6

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|+.+       |||||+|.+.++|..||+.|||..|.|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g   77 (108)
T 1x4c_A           13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS   77 (108)
T ss_dssp             SCCCEEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence            3578999999999999999999999999998        7999866       899999999999999999999999999


Q ss_pred             -----eEEEEEEccc
Q psy2160         578 -----KKIKVERAKF  587 (773)
Q Consensus       578 -----~~i~V~~a~~  587 (773)
                           +.|.|.+|..
T Consensus        78 ~~~~~~~i~V~~a~~   92 (108)
T 1x4c_A           78 HEGETAYIRVKVDGP   92 (108)
T ss_dssp             TTSCEEEEEEEESSC
T ss_pred             CcCcceEEEEEeCCC
Confidence                 9999999984

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.45  E-value=1.2e-13  Score=135.77  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=76.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |.|+.+. +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr  157 (177)
T 2f3j_A           87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR  157 (177)
T ss_dssp             TCEEEEEECCCSCCCHHHHHHHHHHTSCCSE--------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence            6799999999999999999999999999998        9999999 699999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus       158 ~l~V~~a~~  166 (177)
T 2f3j_A          158 PMDIQLVAS  166 (177)
T ss_dssp             BCEEEEESS
T ss_pred             EEEEEEecC
Confidence            999999874

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.45  E-value=1.9e-13  Score=123.08  Aligned_cols=73  Identities=23%  Similarity=0.443  Sum_probs=69.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|.        +|||||+|.+.++|..|+..|||..|.|+
T Consensus        30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   93 (108)
T 2jvo_A           30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKE--------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ   93 (108)
T ss_dssp             SCSEEEECSSCTTCCHHHHHHHHTTTSCCCE--------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            7899999999999999999999999999998        8887        68999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        94 ~l~V~~a~~  102 (108)
T 2jvo_A           94 PLEVVYSKL  102 (108)
T ss_dssp             ECEEESCSC
T ss_pred             EEEEEEecC
Confidence            999998863

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=127.05  Aligned_cols=80  Identities=23%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcc----eeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLV----MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I----~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ....++|||+|||+++|+++|+++|+.||.|    .        .|+|+.+. +|+++|||||+|.+.++|.+||.. |+
T Consensus        20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~--------~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~   89 (123)
T 2dha_A           20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE--------GILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK   89 (123)
T ss_dssp             CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGG--------GEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcc--------eEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC
Confidence            3567899999999999999999999999986    4        59999995 699999999999999999999975 99


Q ss_pred             ceecCeEEEEEEcc
Q psy2160         573 YEIRGKKIKVERAK  586 (773)
Q Consensus       573 ~~i~g~~i~V~~a~  586 (773)
                      ..|.|+.|.|..+.
T Consensus        90 ~~l~gR~i~V~~a~  103 (123)
T 2dha_A           90 DLLGKRYIELFRST  103 (123)
T ss_dssp             EESSSCEECCEEEC
T ss_pred             CeeCCeEEEEEECC
Confidence            99999999999887

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=1.2e-13  Score=121.98  Aligned_cols=75  Identities=28%  Similarity=0.463  Sum_probs=70.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|.++      +|||||+|.+.++|..|++.||+..|.|+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~   79 (99)
T 2cpj_A           14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK   79 (99)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence            6799999999999999999999999999998        888743      68999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        80 ~l~v~~a~~   88 (99)
T 2cpj_A           80 QLRVRFACH   88 (99)
T ss_dssp             CCEEEESSC
T ss_pred             eEEEEEcCC
Confidence            999999874

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=8.8e-14  Score=125.85  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=70.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |.|.+      ++|||||+|.+.++|..||..|||..|.|+
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   74 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV   74 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence            6789999999999999999999999999987        88763      478999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        75 ~l~V~~a~~   83 (111)
T 1whx_A           75 PLYLEWAPI   83 (111)
T ss_dssp             BCEEEEEET
T ss_pred             EEEEEECCC
Confidence            999999874

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.45  E-value=1.2e-13  Score=123.42  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc--ee
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EI  575 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~--~i  575 (773)
                      .+.++|||+|||.++|+++|+++|++||.|.        +|.|+++      +|||||+|.+.++|..|+..|++.  .|
T Consensus        13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i   78 (104)
T 1wex_A           13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC--------YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI   78 (104)
T ss_dssp             CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence            4578999999999999999999999999999        7888753      799999999999999999988764  58


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|++|.|.+|+.
T Consensus        79 ~Gr~l~V~~a~~   90 (104)
T 1wex_A           79 AGQQAFFNYSTS   90 (104)
T ss_dssp             SSSBCEEEECSS
T ss_pred             CCEEEEEEEccC
Confidence            999999999984

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=1.7e-13  Score=123.54  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC--Ccee
Q psy2160         214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln--g~~l  290 (773)
                      .+++|||+|||.+ +|+++|+++|++||.|..        |+|.+      ++|||||+|.+.++|..||+.|+  +..|
T Consensus        24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l   89 (112)
T 1x4f_A           24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF   89 (112)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred             CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence            5799999999998 999999999999999998        88863      47899999999999999999885  4569


Q ss_pred             cCeEEEEEeecc
Q psy2160         291 RGKKIKVERAKF  302 (773)
Q Consensus       291 ~g~~I~V~~A~~  302 (773)
                      .|++|+|.+|..
T Consensus        90 ~Gr~l~V~~a~~  101 (112)
T 1x4f_A           90 QGRCVKVDLSEK  101 (112)
T ss_dssp             SSSCCEEEEECS
T ss_pred             CCEEEEEEECcc
Confidence            999999999874

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3.7e-13  Score=117.22  Aligned_cols=76  Identities=24%  Similarity=0.315  Sum_probs=70.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+        ++||||+|.+.++|..|+..|||..|.
T Consensus         7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~   70 (92)
T 2dgt_A            7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVI--------ECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQ   70 (92)
T ss_dssp             CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCC--------EEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence            34678999999999999999999999999998        68886        459999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|+..
T Consensus        71 g~~l~V~~a~~~   82 (92)
T 2dgt_A           71 GKRMHVQLSTSR   82 (92)
T ss_dssp             TEEEEEEESSCC
T ss_pred             CcEEEEEEccCC
Confidence            999999999843

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.44  E-value=3.7e-13  Score=118.63  Aligned_cols=74  Identities=20%  Similarity=0.384  Sum_probs=69.3

Q ss_pred             CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ....++|||+|||. ++|+++|+++|+.||.|.        .|+|.        +|||||+|.+.++|..|+..|||..+
T Consensus        19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~   82 (97)
T 2xnq_A           19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--------QINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN   82 (97)
T ss_dssp             CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE--------EEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence            45689999999998 999999999999999998        67772        79999999999999999999999999


Q ss_pred             cCeEEEEEEcc
Q psy2160         576 RGKKIKVERAK  586 (773)
Q Consensus       576 ~g~~i~V~~a~  586 (773)
                      .|+.|+|.+|+
T Consensus        83 ~g~~l~V~~a~   93 (97)
T 2xnq_A           83 FGKKLILEVSS   93 (97)
T ss_dssp             TTEECEEEECC
T ss_pred             CCEEEEEEecC
Confidence            99999999987

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.44  E-value=5.1e-14  Score=133.35  Aligned_cols=86  Identities=20%  Similarity=0.309  Sum_probs=71.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|......--..|++.   .+|+++|||||+|.+.++|..||..|||..|.|+
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~  120 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK  120 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence            6799999999999999999999999999875000000002332   2499999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus       121 ~l~V~~a~~  129 (143)
T 3egn_A          121 PMVVQFARS  129 (143)
T ss_dssp             ECEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999874

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=2.2e-13  Score=119.89  Aligned_cols=77  Identities=17%  Similarity=0.298  Sum_probs=70.9

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        .|.+..+      +|||||+|.+.++|..|++.|||..|.
T Consensus        14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~   79 (97)
T 1why_A           14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIR--------TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLG   79 (97)
T ss_dssp             CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence            34578999999999999999999999999998        7888743      789999999999999999999999999


Q ss_pred             --CeEEEEEEccc
Q psy2160         577 --GKKIKVERAKF  587 (773)
Q Consensus       577 --g~~i~V~~a~~  587 (773)
                        |+.|+|.+|+.
T Consensus        80 ~~g~~l~V~~a~~   92 (97)
T 1why_A           80 GPDRRLRVDFAKS   92 (97)
T ss_dssp             SSSCBCEEEECCC
T ss_pred             CCCcEEEEEECCC
Confidence              99999999984

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.3e-13  Score=118.49  Aligned_cols=72  Identities=25%  Similarity=0.393  Sum_probs=64.7

Q ss_pred             CCccEEEEcCCCCCCCHHH----HHHHHhhcC-cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         213 EESTKVYVSNLPLDLTQEE----FVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~e----l~~~Fs~~G-~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      |..|.|||+|||.++++++    |+++|+.|| .|..        |       ||   |+|||.|.+.++|..|++.|||
T Consensus         7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--------V-------tg---G~AfV~F~~~esA~~A~~~l~G   68 (96)
T 2diu_A            7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--------I-------TG---CSAILRFINQDSAERAQKRMEN   68 (96)
T ss_dssp             CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--------C-------CT---TCEEEEESSHHHHHHHHHHHTT
T ss_pred             CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--------E-------ec---CEEEEEECCHHHHHHHHHHhcC
Confidence            3566799999999999998    558999995 9987        4       35   9999999999999999999999


Q ss_pred             ceecCeEEEEEeecc
Q psy2160         288 YEIRGKKIKVERAKF  302 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~  302 (773)
                      ..|.||+|+|++|+.
T Consensus        69 ~~l~gr~i~v~~A~~   83 (96)
T 2diu_A           69 EDVFGNRIIVSFTPK   83 (96)
T ss_dssp             CCSSSSCCEEESSCC
T ss_pred             CccCCceEEEEecCC
Confidence            999999999999884

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.8e-13  Score=117.49  Aligned_cols=76  Identities=25%  Similarity=0.400  Sum_probs=70.0

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|+        ++||||+|.+.++|..|+..|||..|.
T Consensus         6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~   69 (90)
T 2dnp_A            6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVI--------ECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVK   69 (90)
T ss_dssp             SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            44678999999999999999999999999998        78886        459999999999999999999999999


Q ss_pred             CeEEEEEEcccc
Q psy2160         577 GKKIKVERAKFT  588 (773)
Q Consensus       577 g~~i~V~~a~~~  588 (773)
                      |+.|+|.+|...
T Consensus        70 g~~l~v~~a~~~   81 (90)
T 2dnp_A           70 GKRINVELSTKG   81 (90)
T ss_dssp             TEECEEEESCCC
T ss_pred             CcEEEEEECCCC
Confidence            999999999843

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.44  E-value=1.4e-13  Score=122.27  Aligned_cols=78  Identities=22%  Similarity=0.340  Sum_probs=74.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|+.||.|.        .|+|+.++ +|.++|||||+|.+.++|..|+.  +|..|.|+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~   76 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVK--------EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK   76 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence            458999999999999999999999999998        79999998 79999999999999999999997  99999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      .|.|.++..
T Consensus        77 ~l~v~~a~~   85 (102)
T 2xs2_A           77 KLKLGPAIR   85 (102)
T ss_dssp             ECEEEEEEE
T ss_pred             EEEEEECCc
Confidence            999999874

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.44  E-value=1.7e-13  Score=121.03  Aligned_cols=77  Identities=27%  Similarity=0.443  Sum_probs=71.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|+|.++      +|||||+|.+.++|..|++.|||..|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~   77 (99)
T 2cpj_A           12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--------EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR   77 (99)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCS--------EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE--------EEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            34578999999999999999999999999998        7888744      789999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|+|.+|+.
T Consensus        78 g~~l~v~~a~~   88 (99)
T 2cpj_A           78 GKQLRVRFACH   88 (99)
T ss_dssp             TBCCEEEESSC
T ss_pred             CceEEEEEcCC
Confidence            99999999984

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=119.98  Aligned_cols=78  Identities=24%  Similarity=0.355  Sum_probs=70.3

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.         +.++.+    .++|||||+|.+.++|..|+..|||..|.
T Consensus        16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~   82 (97)
T 2e5j_A           16 APLAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG   82 (97)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred             CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            34578999999999999999999999999996         455544    46999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|+.
T Consensus        83 g~~l~V~~a~~   93 (97)
T 2e5j_A           83 TDTLRVALARQ   93 (97)
T ss_dssp             SSCCEEEECCC
T ss_pred             CcEEEEEEcCC
Confidence            99999999983

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=1.5e-13  Score=124.38  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=69.6

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        .|.|+.      ++|||||+|.+.++|..||..|||..|.|+
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   74 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG--------RVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV   74 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence            468999999999999999999999999998        687763      478999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|.|.+|..
T Consensus        75 ~l~V~~a~~   83 (111)
T 1whx_A           75 PLYLEWAPI   83 (111)
T ss_dssp             BCEEEEEET
T ss_pred             EEEEEECCC
Confidence            999999984

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.43  E-value=3.5e-13  Score=121.24  Aligned_cols=75  Identities=24%  Similarity=0.437  Sum_probs=70.6

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|++||.|.        .|.|.        +|||||+|.+.++|..|+..|||..|.
T Consensus        28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~   91 (108)
T 2jvo_A           28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMK--------EVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA   91 (108)
T ss_dssp             CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC--------EEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            45679999999999999999999999999998        78887        689999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.+|+.
T Consensus        92 g~~l~V~~a~~  102 (108)
T 2jvo_A           92 NQPLEVVYSKL  102 (108)
T ss_dssp             TEECEEESCSC
T ss_pred             CeEEEEEEecC
Confidence            99999999983

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.43  E-value=7.6e-13  Score=116.88  Aligned_cols=74  Identities=26%  Similarity=0.345  Sum_probs=68.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhc--CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~--G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      .+++|||+|||.++|+++|+++|++|  |.|..        |++.        +|||||+|.+.++|..||..||+..|.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--------~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~   77 (99)
T 2cpd_A           14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER--------VKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD   77 (99)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE--------EEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred             CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence            67999999999999999999999999  88876        6653        579999999999999999999999999


Q ss_pred             CeEEEEEeeccc
Q psy2160         292 GKKIKVERAKFT  303 (773)
Q Consensus       292 g~~I~V~~A~~~  303 (773)
                      |++|+|.+|...
T Consensus        78 g~~l~v~~a~~~   89 (99)
T 2cpd_A           78 GSPIEVTLAKPV   89 (99)
T ss_dssp             TEEEEEECCCCC
T ss_pred             CcEEEEEECCCC
Confidence            999999998743

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=7.7e-13  Score=115.16  Aligned_cols=74  Identities=26%  Similarity=0.320  Sum_probs=69.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|.        +|||||+|.+.++|..|+..||+..|.|+
T Consensus         9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~   72 (92)
T 2dgt_A            9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIE--------CDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGK   72 (92)
T ss_dssp             SSEEEEEESCCSSCCHHHHHHHHHTTSCCCE--------EEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence            7799999999999999999999999999998        8887        34999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        73 ~l~V~~a~~~   82 (92)
T 2dgt_A           73 RMHVQLSTSR   82 (92)
T ss_dssp             EEEEEESSCC
T ss_pred             EEEEEEccCC
Confidence            9999998743

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.43  E-value=3.8e-14  Score=133.21  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=72.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++|| |..        |+|++|+. |+++|||||+|.+.++|..|| .+|+..|.|+
T Consensus        45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~--------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR  113 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVR--------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR  113 (139)
T ss_dssp             CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE--------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence            668999999999999999999999999 556        99999998 999999999999999999999 6899999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|.|..+..
T Consensus       114 ~i~V~~a~~  122 (139)
T 2hgn_A          114 YIELFLNST  122 (139)
T ss_dssp             CCCCEECCC
T ss_pred             EEEEEECCC
Confidence            999988763

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.43  E-value=9e-14  Score=123.42  Aligned_cols=75  Identities=11%  Similarity=0.180  Sum_probs=68.4

Q ss_pred             CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--ee
Q psy2160         214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l  290 (773)
                      .+++|||+|||. ++|+++|+++|++||.|..        |+|+++      +|||||+|.+.++|..||+.||+.  .|
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~   79 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV   79 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence            568999999999 9999999999999999998        888764      479999999999999999988864  59


Q ss_pred             cCeEEEEEeecc
Q psy2160         291 RGKKIKVERAKF  302 (773)
Q Consensus       291 ~g~~I~V~~A~~  302 (773)
                      .|++|+|++|..
T Consensus        80 ~Gr~l~V~~a~~   91 (102)
T 1x4d_A           80 FGKPVRVHLSQK   91 (102)
T ss_dssp             TTEECEEEEECC
T ss_pred             CCcEEEEEECCC
Confidence            999999999873

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.42  E-value=2.5e-13  Score=133.40  Aligned_cols=82  Identities=17%  Similarity=0.284  Sum_probs=77.5

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||.++|+++|+++|+.||.|.        .|.|..+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus        85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~  155 (177)
T 2f3j_A           85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD  155 (177)
T ss_dssp             CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCS--------EEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence            34578999999999999999999999999998        79999998 7999999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus       156 Gr~l~V~~a~~  166 (177)
T 2f3j_A          156 GRPMDIQLVAS  166 (177)
T ss_dssp             SSBCEEEEESS
T ss_pred             CEEEEEEEecC
Confidence            99999999984

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=2.4e-13  Score=119.45  Aligned_cols=73  Identities=21%  Similarity=0.370  Sum_probs=69.0

Q ss_pred             CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||. ++|+++|+++|++||.|..        |+|.        +|||||+|.+.++|..||..||+..+.|
T Consensus         9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g   72 (96)
T 2kvi_A            9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIECESQEMNFG   72 (96)
T ss_dssp             CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE--------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence            779999999998 9999999999999999998        8884        6899999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        73 ~~l~V~~a~~   82 (96)
T 2kvi_A           73 KKLILEVSSS   82 (96)
T ss_dssp             TTBCEEEEEC
T ss_pred             cEEEEEEcCc
Confidence            9999999874

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.42  E-value=3.8e-13  Score=117.30  Aligned_cols=74  Identities=23%  Similarity=0.332  Sum_probs=67.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCc-ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC-ceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG-YEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~-I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng-~~l~  291 (773)
                      ..++|||+|||.++|+++|+++|++||. |..        +.+.       ++|||||+|.+.++|..||+.||+ ..|.
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~   71 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELH   71 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence            6799999999999999999999999999 554        5552       378999999999999999999999 9999


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|.+|..
T Consensus        72 g~~l~v~~a~~   82 (93)
T 2cqh_A           72 GKIMEVDYSVS   82 (93)
T ss_dssp             TEECEEEECCC
T ss_pred             CEEEEEEEccC
Confidence            99999999874

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.42  E-value=6.1e-13  Score=119.95  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=68.8

Q ss_pred             CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||.+ +|+++|+++|++||.|..        |+|        ++|||||+|.+.++|..||+.||+..|.|
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g   89 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG--------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG   89 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE--------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence            6699999999999 999999999999999998        888        47899999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        90 ~~l~V~~a~~   99 (110)
T 1wf1_A           90 QTLDINMAGE   99 (110)
T ss_dssp             EECCEEESCC
T ss_pred             eEEEEEECCC
Confidence            9999999863

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.41  E-value=1.4e-13  Score=120.75  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=70.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .+     ..+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus        14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~--------~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   80 (96)
T 1fjc_A           14 RAARTLLAKNLSFNITEDELKEVFEDALEIR--------LV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG   80 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC--------CE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE--------Ee-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3568999999999999999999999999987        34     2347899999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|.+|..
T Consensus        81 ~~l~v~~a~~   90 (96)
T 1fjc_A           81 RSVSLYYTGE   90 (96)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEEEcCC
Confidence            9999999973

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.41  E-value=4.1e-13  Score=119.58  Aligned_cols=74  Identities=20%  Similarity=0.337  Sum_probs=69.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+        +|||||+|.+.++|..||..||+..|.|+
T Consensus        10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~   73 (103)
T 2dgu_A           10 KVKVLFVRNLANTVTEEILEKAFSQFGKLER--------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGE   73 (103)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence            6799999999999999999999999999998        8876        45999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        74 ~l~v~~a~~~   83 (103)
T 2dgu_A           74 NIEIVFAKPP   83 (103)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEcCCC
Confidence            9999998743

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.41  E-value=5.3e-13  Score=118.83  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=69.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .|+|+        +|||||+|.+.++|..|+..|||..|.|
T Consensus         9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g   72 (103)
T 2dgu_A            9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE--------RVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG   72 (103)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE--------EEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence            3568999999999999999999999999998        68776        5699999999999999999999999999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      +.|.|.+|...
T Consensus        73 ~~l~v~~a~~~   83 (103)
T 2dgu_A           73 ENIEIVFAKPP   83 (103)
T ss_dssp             EEEEEEECCCC
T ss_pred             CEEEEEEcCCC
Confidence            99999999843

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=4.7e-13  Score=116.02  Aligned_cols=73  Identities=25%  Similarity=0.412  Sum_probs=68.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|.+        |||||+|.+.++|..||..||+..|.|+
T Consensus         8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~   71 (90)
T 2dnp_A            8 NTWKIFVGNVSAACTSQELRSLFERRGRVIE--------CDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGK   71 (90)
T ss_dssp             CSCCEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            6799999999999999999999999999998        88873        4999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        72 ~l~v~~a~~   80 (90)
T 2dnp_A           72 RINVELSTK   80 (90)
T ss_dssp             ECEEEESCC
T ss_pred             EEEEEECCC
Confidence            999999874

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.41  E-value=1.1e-13  Score=124.66  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             CCCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC--Cc
Q psy2160         497 AQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GY  573 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~  573 (773)
                      ..+.++|||+|||.+ +|+++|+++|++||.|.        +|.|++      ++|||||+|.+.++|..|++.||  +.
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~--------~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~   87 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK--------NYILMR------MKSQAFIEMETREDAMAMVDHCLKKAL   87 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS--------EEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE--------EEEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence            446789999999998 99999999999999999        788873      37999999999999999999886  45


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|++|+|.+|+.
T Consensus        88 ~l~Gr~l~V~~a~~  101 (112)
T 1x4f_A           88 WFQGRCVKVDLSEK  101 (112)
T ss_dssp             CSSSSCCEEEEECS
T ss_pred             eECCEEEEEEECcc
Confidence            69999999999973

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.41  E-value=4.4e-13  Score=126.87  Aligned_cols=88  Identities=20%  Similarity=0.330  Sum_probs=72.1

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..++++|||+|||.++|+++|+.+|+.||.|..........|++..   +|.++|||||+|.+.++|..||..|||..|.
T Consensus        42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~  118 (143)
T 3egn_A           42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVLF  118 (143)
T ss_dssp             CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence            4467899999999999999999999999998721000000133332   4889999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|.|.+|+.
T Consensus       119 g~~l~V~~a~~  129 (143)
T 3egn_A          119 GKPMVVQFARS  129 (143)
T ss_dssp             TEECEEEECCC
T ss_pred             CcEEEEEECCC
Confidence            99999999984

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.41  E-value=5.4e-13  Score=115.22  Aligned_cols=74  Identities=23%  Similarity=0.313  Sum_probs=68.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++| .|..        |+|.      +++|||||+|.+.++|..|++.|||..+.|+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~   68 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK   68 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence            56899999999999999999999999 8887        8884      5689999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        69 ~l~V~~a~~   77 (88)
T 1wg1_A           69 DLIVQLQPT   77 (88)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999864

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=2.8e-13  Score=118.89  Aligned_cols=77  Identities=25%  Similarity=0.324  Sum_probs=70.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeE-EEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i-~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        | .|+.++.+|    .|||+|.+.++|..||..|||..|.|
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g   81 (96)
T 2e44_A           14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES--------CEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLEN   81 (96)
T ss_dssp             SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE--------EEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred             CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECC
Confidence            6799999999999999999999999999998        8 488776633    49999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        82 ~~l~V~~a~~   91 (96)
T 2e44_A           82 FTLKVAYIPD   91 (96)
T ss_dssp             CBCEEEECCC
T ss_pred             cEEEEEEcCc
Confidence            9999999874

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.40  E-value=3.7e-13  Score=118.25  Aligned_cols=75  Identities=20%  Similarity=0.359  Sum_probs=69.0

Q ss_pred             CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ..+.++|||+|||. ++|+++|+++|++||.|.        .|.|.        +|||||+|.+.++|..|+..|||..+
T Consensus         7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~   70 (96)
T 2kvi_A            7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--------QINIK--------NAFGFIQFDNPQSVRDAIECESQEMN   70 (96)
T ss_dssp             --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC--------EEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence            45679999999998 999999999999999998        68874        78999999999999999999999999


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|++|+|.+++.
T Consensus        71 ~g~~l~V~~a~~   82 (96)
T 2kvi_A           71 FGKKLILEVSSS   82 (96)
T ss_dssp             BTTTBCEEEEEC
T ss_pred             CCcEEEEEEcCc
Confidence            999999999984

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.40  E-value=1.8e-13  Score=126.31  Aligned_cols=81  Identities=25%  Similarity=0.347  Sum_probs=72.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||+++|+++|+++|+.|+.+..       .|+|++|+. |+++|||||+|.+.++|.+||. +++..|.
T Consensus        39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~-------~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~  109 (126)
T 2hgm_A           39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPN-------GITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG  109 (126)
T ss_dssp             SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEE-------EEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceee-------EEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC
Confidence            345689999999999999999999999966521       499999988 9999999999999999999997 5889999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|.|..+.
T Consensus       110 gR~I~V~~a~  119 (126)
T 2hgm_A          110 HRYIEVFKSS  119 (126)
T ss_dssp             TBCCCCEEEC
T ss_pred             CEEEEEEECC
Confidence            9999999886

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.40  E-value=4.6e-13  Score=149.83  Aligned_cols=81  Identities=17%  Similarity=0.298  Sum_probs=77.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+.+|+++|.++|++||.|..        |+|+.+..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus       101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr  172 (437)
T 3pgw_S          101 AFKTLFVARVNYDTTESKLRREFEVYGPIKR--------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR  172 (437)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence            5689999999999999999999999999998        99999988899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.+|..
T Consensus       173 ~i~V~~a~~  181 (437)
T 3pgw_S          173 RVLVDVERG  181 (437)
T ss_pred             EEEEEEeCC
Confidence            999999874

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.40  E-value=1.2e-12  Score=115.56  Aligned_cols=75  Identities=25%  Similarity=0.336  Sum_probs=68.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhc--CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  575 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i  575 (773)
                      ...++|||+|||.++|+++|+++|++|  |.|.        .|++.        +|||||+|.+.++|..|+..|||..|
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~--------~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~   76 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE--------RVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL   76 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE--------EEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE--------EEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence            457899999999999999999999999  8887        56653        68999999999999999999999999


Q ss_pred             cCeEEEEEEcccc
Q psy2160         576 RGKKIKVERAKFT  588 (773)
Q Consensus       576 ~g~~i~V~~a~~~  588 (773)
                      .|+.|+|.+|+..
T Consensus        77 ~g~~l~v~~a~~~   89 (99)
T 2cpd_A           77 DGSPIEVTLAKPV   89 (99)
T ss_dssp             TTEEEEEECCCCC
T ss_pred             CCcEEEEEECCCC
Confidence            9999999999843

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.40  E-value=4.1e-13  Score=117.12  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=67.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCc-ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC-cee
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG-YEI  575 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng-~~i  575 (773)
                      ...++|||+|||.++|+++|+++|++||. |.        .+.+.       ++|||||+|.+.++|..|+..||| ..|
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~--------~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~   70 (93)
T 2cqh_A            6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA--------GQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL   70 (93)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS--------SCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE--------EEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence            45789999999999999999999999999 54        34442       489999999999999999999999 999


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|++|+|.+|..
T Consensus        71 ~g~~l~v~~a~~   82 (93)
T 2cqh_A           71 HGKIMEVDYSVS   82 (93)
T ss_dssp             TTEECEEEECCC
T ss_pred             CCEEEEEEEccC
Confidence            999999999984

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8e-13  Score=115.59  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |  +.+..+|+   ||||+|.+.++|..||. ||+..|.|+
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~   72 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS--------V--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH   72 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTSCEEE--------E--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------E--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence            5689999999999999999999999999986        6  66666566   99999999999999999 999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|.|.+|.
T Consensus        73 ~l~V~~a~   80 (94)
T 2e5g_A           73 RLRVRPRE   80 (94)
T ss_dssp             ECCCBCSC
T ss_pred             EEEEEECC
Confidence            99998775

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.39  E-value=5.7e-13  Score=115.06  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++| .|.        .|+|.      .++|||||+|.+.++|..|+..|||..+.|+
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~--------~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~   68 (88)
T 1wg1_A            4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK--------YCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK   68 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSS-CCC--------CEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE--------EEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence            56899999999999999999999999 787        57774      3689999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|.+|..
T Consensus        69 ~l~V~~a~~   77 (88)
T 1wg1_A           69 DLIVQLQPT   77 (88)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999873

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.39  E-value=8e-13  Score=119.17  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=69.0

Q ss_pred             CCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...++|||+|||.+ +|+++|+++|++||.|.        .|.|        ++|||||+|.+.++|..|+..|||..|.
T Consensus        25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~--------~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~   88 (110)
T 1wf1_A           25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVA--------GCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA   88 (110)
T ss_dssp             TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCS--------EEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeE--------EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            34689999999999 99999999999999998        6877        3899999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |+.|+|.+|..
T Consensus        89 g~~l~V~~a~~   99 (110)
T 1wf1_A           89 GQTLDINMAGE   99 (110)
T ss_dssp             TEECCEEESCC
T ss_pred             CeEEEEEECCC
Confidence            99999999973

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=4.7e-13  Score=117.44  Aligned_cols=78  Identities=26%  Similarity=0.331  Sum_probs=71.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEE-EEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i-~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        .| .|+.++.+    |.|||+|.+.++|..|+..|||..|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~   80 (96)
T 2e44_A           13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVE--------SCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLE   80 (96)
T ss_dssp             CSCCCEEEEEECSSSCHHHHHHHHHHHSCEE--------EEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            3568999999999999999999999999998        78 48888753    44999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|+|.+|..
T Consensus        81 g~~l~V~~a~~   91 (96)
T 2e44_A           81 NFTLKVAYIPD   91 (96)
T ss_dssp             SCBCEEEECCC
T ss_pred             CcEEEEEEcCc
Confidence            99999999984

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.38  E-value=1.2e-13  Score=129.92  Aligned_cols=79  Identities=14%  Similarity=0.201  Sum_probs=72.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.|| |.        .|+|++|+. |+++|||||+|.+.++|.+|| .+|+..|.|
T Consensus        44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~--------~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g  112 (139)
T 2hgn_A           44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PV--------RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQH  112 (139)
T ss_dssp             -CCCCEECCSCCTTCCHHHHHHHHCSCC-CS--------EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce--------EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence            4568999999999999999999999999 55        599999987 999999999999999999999 799999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|..+..
T Consensus       113 R~i~V~~a~~  122 (139)
T 2hgn_A          113 RYIELFLNST  122 (139)
T ss_dssp             CCCCCEECCC
T ss_pred             EEEEEEECCC
Confidence            9999998873

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.38  E-value=1.8e-12  Score=119.56  Aligned_cols=77  Identities=27%  Similarity=0.331  Sum_probs=70.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceE-EEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~-AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .-.+|||+|||+.+|+++|+++|++||.|.+        |+|+.+     .+|| |||+|.+.++|..|++.|||..|.|
T Consensus        27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~--------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g   93 (130)
T 3zzy_A           27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN   93 (130)
T ss_dssp             SEEEEEEESCCSCCCHHHHHHHHTTSSCEEE--------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred             ceEEEEECCCCCCCCHHHHHHHHhCcCCEEE--------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence            5578999999999999999999999999998        988764     2577 9999999999999999999999988


Q ss_pred             --eEEEEEeeccc
Q psy2160         293 --KKIKVERAKFT  303 (773)
Q Consensus       293 --~~I~V~~A~~~  303 (773)
                        ++|+|++|+..
T Consensus        94 ~~~~LrI~~ak~~  106 (130)
T 3zzy_A           94 ACCTLRIDFSKLT  106 (130)
T ss_dssp             TEEEEEEEECSCS
T ss_pred             CCcEEEEEecCCC
Confidence              99999999854

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.38  E-value=1.1e-12  Score=119.75  Aligned_cols=82  Identities=28%  Similarity=0.573  Sum_probs=72.8

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC--------CCCeEEEEEecCHHHHHHHHHHhC
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK--------HPEGVAQIFFKEPEAADACRELLN  419 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~--------~~~G~afV~F~~~e~A~~Ai~~ln  419 (773)
                      .+++|+|+||++|.++.+      +++++|+++|++||.|.+|.|+..        ++.|++||.|.+.++|.+|+..||
T Consensus        19 ps~vl~L~Nm~~~~el~d------dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln   92 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN   92 (118)
T ss_dssp             SCCEEEEESCSCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHH------HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence            488999999999988764      477999999999999999988743        235899999999999999999999


Q ss_pred             CcccCCeeEEEEecCC
Q psy2160         420 GRWFGQRQITAETWDG  435 (773)
Q Consensus       420 g~~~~Gr~I~v~~~~~  435 (773)
                      |+.|+||.|.|.+++.
T Consensus        93 Gr~f~GR~i~v~~~~~  108 (118)
T 3ue2_A           93 GRWFAGRKVVAEVYDQ  108 (118)
T ss_dssp             TCEETTEECEEEEECH
T ss_pred             CCEECCcEEEEEEcCh
Confidence            9999999999998763

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.38  E-value=7.8e-13  Score=113.62  Aligned_cols=71  Identities=23%  Similarity=0.492  Sum_probs=64.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhc----C-------cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHH
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKC----G-------LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL  282 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~----G-------~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al  282 (773)
                      ..++|||+|||.++|+++|+++|++|    |       .|..        |++.+      .+|||||+|.+.++|..|+
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--------~~~~~------~kg~afV~f~~~~~a~~A~   70 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--------VQINQ------DKNFAFLEFRSVDETTQAM   70 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--------EEECS------SSSEEEEEESSHHHHHHHG
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE--------EEecC------CCcEEEEEcCCHHHHHHHH
Confidence            67999999999999999999999999    7       6665        66653      3789999999999999999


Q ss_pred             HHcCCceecCeEEEEEe
Q psy2160         283 SILDGYEIRGKKIKVER  299 (773)
Q Consensus       283 ~~lng~~l~g~~I~V~~  299 (773)
                       .||+..|.|++|+|++
T Consensus        71 -~l~g~~~~g~~l~V~r   86 (87)
T 2hzc_A           71 -AFDGIIFQGQSLKIRR   86 (87)
T ss_dssp             -GGTTCEETTEECEEEC
T ss_pred             -hcCCCEECCeEEEEeC
Confidence             8999999999999975

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.7e-13  Score=121.57  Aligned_cols=74  Identities=23%  Similarity=0.294  Sum_probs=64.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCC---CCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---KDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~t---g~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      ..++|||+|||.++|+++|+++|++||.|.         +.++.+..|   |+++|||||+|.+.++|..||+.|+  .+
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~   75 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EE   75 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hc
Confidence            679999999999999999999999999998         577777776   7999999999999999999999883  24


Q ss_pred             cCeEEEEE
Q psy2160         291 RGKKIKVE  298 (773)
Q Consensus       291 ~g~~I~V~  298 (773)
                      .|+.|.+.
T Consensus        76 ~G~~~~~~   83 (114)
T 2dnl_A           76 DGKLYLCV   83 (114)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEec
Confidence            55555554

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.37  E-value=1.9e-12  Score=115.75  Aligned_cols=81  Identities=21%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             CCCCEEEEcCCCC-----CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-CCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         498 QENTKVYVSNLPL-----DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       498 ~~~~~l~V~nLp~-----~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      .+.++|+|+||..     +-++++|++.|++||.|.        +|.|++++.+ +.++|+|||+|.++++|.+|+..||
T Consensus         6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~--------~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln   77 (105)
T 2pe8_A            6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG--------KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN   77 (105)
T ss_dssp             SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE--------EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE--------EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence            4678999999962     237899999999999999        8999998754 6889999999999999999999999


Q ss_pred             CceecCeEEEEEEcc
Q psy2160         572 GYEIRGKKIKVERAK  586 (773)
Q Consensus       572 g~~i~g~~i~V~~a~  586 (773)
                      |..|.|+.|+|.++.
T Consensus        78 G~~~~Gr~i~v~~a~   92 (105)
T 2pe8_A           78 GRYFGGRVVKACFYN   92 (105)
T ss_dssp             TCEETTEECEEEECC
T ss_pred             CCEECCcEEEEEEcC
Confidence            999999999999987

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=7.2e-13  Score=113.77  Aligned_cols=71  Identities=25%  Similarity=0.409  Sum_probs=63.0

Q ss_pred             CCCEEEEcCCCCCCCHHH----HHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         499 ENTKVYVSNLPLDLTQEE----FVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~----L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      ..+.|||+|||.++++++    |+++|++|| .|.        +|       +|   |+|||.|.+.++|.+|++.|||.
T Consensus         8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl--------~V-------tg---G~AfV~F~~~esA~~A~~~l~G~   69 (96)
T 2diu_A            8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL--------SI-------TG---CSAILRFINQDSAERAQKRMENE   69 (96)
T ss_dssp             SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE--------EC-------CT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred             cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE--------EE-------ec---CEEEEEECCHHHHHHHHHHhcCC
Confidence            345599999999999988    558999995 887        34       34   99999999999999999999999


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|++|+|++|+.
T Consensus        70 ~l~gr~i~v~~A~~   83 (96)
T 2diu_A           70 DVFGNRIIVSFTPK   83 (96)
T ss_dssp             CSSSSCCEEESSCC
T ss_pred             ccCCceEEEEecCC
Confidence            99999999999984

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.37  E-value=7.9e-13  Score=119.26  Aligned_cols=76  Identities=20%  Similarity=0.320  Sum_probs=68.1

Q ss_pred             CCCCCEEEE--cCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         497 AQENTKVYV--SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       497 ~~~~~~l~V--~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ..+.++|||  +|||.++|+++|+++|++||.|.        +|.|+.      .+|||||+|.+.++|..|++.|||..
T Consensus        22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~--------~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~   87 (114)
T 2cq2_A           22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE   87 (114)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE--------EEECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence            345789999  77999999999999999999998        677653      27999999999999999999999999


Q ss_pred             e-----cCeEEEEEEcc
Q psy2160         575 I-----RGKKIKVERAK  586 (773)
Q Consensus       575 i-----~g~~i~V~~a~  586 (773)
                      |     .|++|.|.+|.
T Consensus        88 ~~~~lg~g~~l~v~~a~  104 (114)
T 2cq2_A           88 VVDDLGQKITLYLNFVE  104 (114)
T ss_dssp             EECTTSCEEECEEEEES
T ss_pred             EccccCCCcEEEEEecc
Confidence            8     68999999987

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=9.5e-13  Score=115.13  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .|  +.+..+|.   ||||+|.+.++|..||. |||..|.|
T Consensus         6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--------~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g   71 (94)
T 2e5g_A            6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVA--------SV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG   71 (94)
T ss_dssp             TTCCEEEEECCCTTCCHHHHHHHGGGTSCEE--------EE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence            3567999999999999999999999999998        55  66766554   99999999999999999 99999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.|.|.+|.
T Consensus        72 ~~l~V~~a~   80 (94)
T 2e5g_A           72 HRLRVRPRE   80 (94)
T ss_dssp             EECCCBCSC
T ss_pred             EEEEEEECC
Confidence            999999886

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.36  E-value=1.8e-12  Score=124.20  Aligned_cols=78  Identities=27%  Similarity=0.344  Sum_probs=70.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      .-.+|||+|||+.+|+++|+++|++||.|.+        |+|+.+    .++|||||+|.+.++|..|++.|||..|.| 
T Consensus        45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~--------V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~  112 (164)
T 1sjr_A           45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA  112 (164)
T ss_dssp             CEEEEEECSCCSCCCHHHHHHHHHHHSCEEE--------EEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSS
T ss_pred             ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence            5578999999999999999999999999998        888753    357999999999999999999999999965 


Q ss_pred             -eEEEEEeeccc
Q psy2160         293 -KKIKVERAKFT  303 (773)
Q Consensus       293 -~~I~V~~A~~~  303 (773)
                       ++|+|++|+..
T Consensus       113 g~~L~V~~Ak~~  124 (164)
T 1sjr_A          113 CCTLRIDFSKLT  124 (164)
T ss_dssp             CSCEEEEECSSS
T ss_pred             CcEEEEEEecCC
Confidence             99999999854

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.36  E-value=2.1e-12  Score=119.21  Aligned_cols=77  Identities=27%  Similarity=0.336  Sum_probs=69.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcce-EEEEeCChHHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~-afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .-..|||+|||..+|+++|+++|++||.|.        +|+|+.+.     +|+ |||+|.+.++|..|++.|||..|.|
T Consensus        27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~--------~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g   93 (130)
T 3zzy_A           27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN   93 (130)
T ss_dssp             SEEEEEEESCCSCCCHHHHHHHHTTSSCEE--------EEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred             ceEEEEECCCCCCCCHHHHHHHHhCcCCEE--------EEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence            446788999999999999999999999999        79887642     677 9999999999999999999999998


Q ss_pred             --eEEEEEEcccc
Q psy2160         578 --KKIKVERAKFT  588 (773)
Q Consensus       578 --~~i~V~~a~~~  588 (773)
                        +.|+|++|+..
T Consensus        94 ~~~~LrI~~ak~~  106 (130)
T 3zzy_A           94 ACCTLRIDFSKLT  106 (130)
T ss_dssp             TEEEEEEEECSCS
T ss_pred             CCcEEEEEecCCC
Confidence              89999999853

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.36  E-value=1.3e-12  Score=130.06  Aligned_cols=78  Identities=19%  Similarity=0.310  Sum_probs=72.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|.++.. |.++|||||+|.+.++|..||..++ ..|.|+
T Consensus       108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr  177 (193)
T 2voo_A          108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKET  177 (193)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTE
T ss_pred             ccCEEEecCCCCcCCHHHHHHHHhcCCCEEE--------EEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCE
Confidence            5689999999999999999999999999998        99999987 9999999999999999999998554 589999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|.|.++.
T Consensus       178 ~l~V~~~~  185 (193)
T 2voo_A          178 DLLILFKD  185 (193)
T ss_dssp             ECEEEETT
T ss_pred             EEEEEEhH
Confidence            99998765

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=2.5e-12  Score=113.09  Aligned_cols=73  Identities=25%  Similarity=0.352  Sum_probs=67.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+||  ++|+++|+++|++||.|..        |+|.      .++|||||+|.+.++|..||..||+..|.|+
T Consensus        14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~--------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~   77 (97)
T 1x5p_A           14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV   77 (97)
T ss_dssp             CCSEEEEECS--SCCHHHHHHHHTTTSCEEE--------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred             CCCEEEEcCC--CCCHHHHHHHHhhCCCEEE--------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            6799999996  9999999999999999988        8873      5688999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        78 ~l~v~~a~~   86 (97)
T 1x5p_A           78 QLKVNIARK   86 (97)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEEECCC
Confidence            999999874

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.35  E-value=1.6e-12  Score=112.62  Aligned_cols=72  Identities=24%  Similarity=0.392  Sum_probs=62.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce--ec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE--IR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~--l~  291 (773)
                      ..++|||+|||+++|+++|+++|++||.|.+        |+|+++     ++|||||+|.+.++|..    +++..  ++
T Consensus        10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~--------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~   72 (89)
T 3d2w_A           10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVD--------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIK   72 (89)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccC
Confidence            7799999999999999999999999999998        898864     68999999999999983    45555  46


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|.|..|..
T Consensus        73 g~~v~v~~a~~   83 (89)
T 3d2w_A           73 GISVHISNAEP   83 (89)
T ss_dssp             TEEEEEEECC-
T ss_pred             CEEEEEEEcCC
Confidence            99999988863

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.34  E-value=1.6e-12  Score=111.63  Aligned_cols=71  Identities=24%  Similarity=0.529  Sum_probs=64.6

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHH
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKC----G-------LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL  567 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai  567 (773)
                      ..++|||+|||.++|+++|+++|+.|    |       .|.        +|++..+      +|||||+|.+.++|..|+
T Consensus         5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~--------~~~~~~~------kg~afV~f~~~~~a~~A~   70 (87)
T 2hzc_A            5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--------AVQINQD------KNFAFLEFRSVDETTQAM   70 (87)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--------EEEECSS------SSEEEEEESSHHHHHHHG
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce--------EEEecCC------CcEEEEEcCCHHHHHHHH
Confidence            46899999999999999999999999    8       676        6777644      799999999999999999


Q ss_pred             HHhCCceecCeEEEEEE
Q psy2160         568 SILDGYEIRGKKIKVER  584 (773)
Q Consensus       568 ~~lng~~i~g~~i~V~~  584 (773)
                       .|||..|.|+.|+|++
T Consensus        71 -~l~g~~~~g~~l~V~r   86 (87)
T 2hzc_A           71 -AFDGIIFQGQSLKIRR   86 (87)
T ss_dssp             -GGTTCEETTEECEEEC
T ss_pred             -hcCCCEECCeEEEEeC
Confidence             9999999999999975

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=2.9e-12  Score=112.68  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=68.5

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+||  ++|+++|+++|++||.|.        .|.|.      .++|||||+|.+.++|..||..|||..|.
T Consensus        12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~--------~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~   75 (97)
T 1x5p_A           12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNII--------DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE   75 (97)
T ss_dssp             CCCCSEEEEECS--SCCHHHHHHHHTTTSCEE--------EEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred             CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEE--------EEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence            346789999996  899999999999999998        68874      35899999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|+|.+|..
T Consensus        76 g~~l~v~~a~~   86 (97)
T 1x5p_A           76 SVQLKVNIARK   86 (97)
T ss_dssp             TEEEEEECCSS
T ss_pred             CeEEEEEECCC
Confidence            99999999984

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.34  E-value=2.2e-12  Score=123.52  Aligned_cols=78  Identities=27%  Similarity=0.326  Sum_probs=70.2

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC-
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g-  577 (773)
                      ...+|||+|||..+|+++|+++|++||.|.        +|.|+.+.    ++|||||+|.+.++|..|++.|||..|.| 
T Consensus        45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~--------~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~  112 (164)
T 1sjr_A           45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNA  112 (164)
T ss_dssp             CEEEEEECSCCSCCCHHHHHHHHHHHSCEE--------EEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSS
T ss_pred             ceEEEEEeCcCCCCCHHHHHHHHHhcCCEE--------EEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence            346799999999999999999999999999        78887543    47899999999999999999999999965 


Q ss_pred             -eEEEEEEcccc
Q psy2160         578 -KKIKVERAKFT  588 (773)
Q Consensus       578 -~~i~V~~a~~~  588 (773)
                       +.|+|++|+..
T Consensus       113 g~~L~V~~Ak~~  124 (164)
T 1sjr_A          113 CCTLRIDFSKLT  124 (164)
T ss_dssp             CSCEEEEECSSS
T ss_pred             CcEEEEEEecCC
Confidence             99999999843

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.34  E-value=8.1e-13  Score=120.25  Aligned_cols=73  Identities=26%  Similarity=0.460  Sum_probs=65.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|.++|++||.|..        |.|+.+       |||||+|.+.++|..||+.||+..|.|+
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr   79 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH   79 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            6799999999999999999999999999998        888765       8999999999999999999999999998


Q ss_pred             E-----EEEEeec
Q psy2160         294 K-----IKVERAK  301 (773)
Q Consensus       294 ~-----I~V~~A~  301 (773)
                      +     |+|..+.
T Consensus        80 ~~~~~~i~v~~~~   92 (115)
T 3beg_B           80 EGETAYIRVKVDG   92 (115)
T ss_dssp             TSCCCBCEEEECC
T ss_pred             EeeeEEEEeccCC
Confidence            8     6665544

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.34  E-value=1.2e-12  Score=118.06  Aligned_cols=74  Identities=20%  Similarity=0.354  Sum_probs=67.0

Q ss_pred             CccEEEE--cCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee-
Q psy2160         214 ESTKVYV--SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-  290 (773)
Q Consensus       214 ~~~~VyV--~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l-  290 (773)
                      ..++|||  +|||.++|+++|+++|++||.|..        |.|+.    +  +|||||+|.+.++|..|++.|||..| 
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--------v~i~~----~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~   89 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP----N--KPYSFARYRTTEESKRAYVTLNGKEVV   89 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCT----T--CSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC----C--CCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence            4578999  779999999999999999999987        77753    2  78999999999999999999999998 


Q ss_pred             ----cCeEEEEEeec
Q psy2160         291 ----RGKKIKVERAK  301 (773)
Q Consensus       291 ----~g~~I~V~~A~  301 (773)
                          .|++|.|.++.
T Consensus        90 ~~lg~g~~l~v~~a~  104 (114)
T 2cq2_A           90 DDLGQKITLYLNFVE  104 (114)
T ss_dssp             CTTSCEEECEEEEES
T ss_pred             cccCCCcEEEEEecc
Confidence                68999999987

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=118.58  Aligned_cols=77  Identities=21%  Similarity=0.282  Sum_probs=66.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC---CCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---KDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t---g~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ...++|||+|||.++|+++|+++|++||.|.         +.++.+..+   |+++|||||+|.+.++|..||+.|+  .
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~   74 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E   74 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence            4578999999999999999999999999997         777777776   7999999999999999999999984  3


Q ss_pred             ecCeEEEEEEc
Q psy2160         575 IRGKKIKVERA  585 (773)
Q Consensus       575 i~g~~i~V~~a  585 (773)
                      +.|+.|.+..+
T Consensus        75 ~~G~~~~~~~~   85 (114)
T 2dnl_A           75 EDGKLYLCVSS   85 (114)
T ss_dssp             ETTEEEEEECC
T ss_pred             cCCcEEEeccC
Confidence            56666666544

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.32  E-value=3.6e-12  Score=110.34  Aligned_cols=73  Identities=22%  Similarity=0.400  Sum_probs=62.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee-
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI-  575 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i-  575 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        +|+|+++     ++|||||+|.+.++|..    |+|..+ 
T Consensus         8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~--------~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~   70 (89)
T 3d2w_A            8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVV--------DVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI   70 (89)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEE--------EEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc
Confidence            45679999999999999999999999999999        7998875     58999999999999983    556554 


Q ss_pred             -cCeEEEEEEcc
Q psy2160         576 -RGKKIKVERAK  586 (773)
Q Consensus       576 -~g~~i~V~~a~  586 (773)
                       .|+.|.|.+|.
T Consensus        71 ~~g~~v~v~~a~   82 (89)
T 3d2w_A           71 IKGISVHISNAE   82 (89)
T ss_dssp             ETTEEEEEEECC
T ss_pred             cCCEEEEEEEcC
Confidence             59999999988

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.32  E-value=8.2e-12  Score=114.68  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceE-EEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~-AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .-..|||+|||+.+|+++|+++|++||.|..        |+|+..      .|| |||+|.+.++|..|++.|||..|.|
T Consensus        24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~--------v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g   89 (124)
T 2e5i_A           24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQR--------IVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYA   89 (124)
T ss_dssp             SEEEEEEESCCSCCCHHHHHHHHTTTSCEEE--------EEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred             cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence            4456899999999999999999999999998        888752      276 9999999999999999999999987


Q ss_pred             --eEEEEEeeccc
Q psy2160         293 --KKIKVERAKFT  303 (773)
Q Consensus       293 --~~I~V~~A~~~  303 (773)
                        ++|+|.+|+..
T Consensus        90 ~~~~l~V~~Ak~~  102 (124)
T 2e5i_A           90 GCCTLKIEYARPT  102 (124)
T ss_dssp             TBSEEEEECCSCS
T ss_pred             CCeEEEEEEecCC
Confidence              69999998753

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.30  E-value=1.8e-12  Score=117.92  Aligned_cols=73  Identities=26%  Similarity=0.463  Sum_probs=65.3

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        .|.|+.+       |||||+|.+.++|..||+.|||..|.|+
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr   79 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH   79 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHHGGGSCEE--------EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            468999999999999999999999999998        7888755       8999999999999999999999999998


Q ss_pred             E-----EEEEEcc
Q psy2160         579 K-----IKVERAK  586 (773)
Q Consensus       579 ~-----i~V~~a~  586 (773)
                      .     |.|..+.
T Consensus        80 ~~~~~~i~v~~~~   92 (115)
T 3beg_B           80 EGETAYIRVKVDG   92 (115)
T ss_dssp             TSCCCBCEEEECC
T ss_pred             EeeeEEEEeccCC
Confidence            8     6666555

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.30  E-value=6.9e-12  Score=115.17  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcce-EEEEeCChHHHHHHHHHhCCceecC--
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG--  577 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~-afV~f~~~e~A~~Ai~~lng~~i~g--  577 (773)
                      ..|||+|||..+|+++|+++|++||.|.        +|+|+..      .|| |||+|.+.++|..|++.|||..|.|  
T Consensus        26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~--------~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~   91 (124)
T 2e5i_A           26 LLLSIQNPLYPITVDVLYTVCNPVGKVQ--------RIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGC   91 (124)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTTSCEE--------EEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB
T ss_pred             EEEEEcCcCCCCCHHHHHHHHHhcCCEE--------EEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC
Confidence            4578999999999999999999999999        7888642      386 9999999999999999999999987  


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.+|+.
T Consensus        92 ~~l~V~~Ak~  101 (124)
T 2e5i_A           92 CTLKIEYARP  101 (124)
T ss_dssp             SEEEEECCSC
T ss_pred             eEEEEEEecC
Confidence            6999999984

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.29  E-value=2e-12  Score=111.56  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=63.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|+++     ++|||||+|.+.++|+.|+..  ...+.|+
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~   68 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGI   68 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCE
Confidence            5799999999999999999999999999998        888754     689999999999999765331  3345899


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|.|.+|...
T Consensus        69 ~l~v~~a~~~   78 (88)
T 1wf0_A           69 SVHISNAEPK   78 (88)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEecCCC
Confidence            9999888743

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.29  E-value=6.6e-12  Score=125.04  Aligned_cols=77  Identities=21%  Similarity=0.322  Sum_probs=71.5

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|++||.|.        .|+|.++.. |.++|||||+|.+.++|..|+..++ ..|.|++
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~  178 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETD  178 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEE--------EEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEE--------EEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence            47999999999999999999999999999        799999875 8999999999999999999997655 5899999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |.|.+++
T Consensus       179 l~V~~~~  185 (193)
T 2voo_A          179 LLILFKD  185 (193)
T ss_dssp             CEEEETT
T ss_pred             EEEEEhH
Confidence            9999877

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.24  E-value=7.5e-12  Score=107.87  Aligned_cols=75  Identities=20%  Similarity=0.332  Sum_probs=63.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        .|+|+.+     ++|||||+|.+.++|+.|+.  .+..+.|+
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~   68 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM--------DVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGI   68 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCC--------EEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCee--------EEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCE
Confidence            568999999999999999999999999998        7888865     58999999999999976432  13445899


Q ss_pred             EEEEEEcccc
Q psy2160         579 KIKVERAKFT  588 (773)
Q Consensus       579 ~i~V~~a~~~  588 (773)
                      +|.|.++...
T Consensus        69 ~l~v~~a~~~   78 (88)
T 1wf0_A           69 SVHISNAEPK   78 (88)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEecCCC
Confidence            9999998843

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.19  E-value=6.7e-12  Score=111.98  Aligned_cols=73  Identities=18%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             EEcCCCCCCCHHHHHHHH------------hhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160         219 YVSNLPLDLTQEEFVEVM------------QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  286 (773)
Q Consensus       219 yV~nLP~~~te~el~~~F------------s~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln  286 (773)
                      .+.|||..+|+++|+++|            ++||.|.+        |+|+++.. |+++|||||.|.+.++|..|+..||
T Consensus        19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~--------v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~ln   89 (104)
T 1jmt_A           19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLN   89 (104)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE--------EEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHC
Confidence            467888888888888777            99999999        99999887 8999999999999999999999999


Q ss_pred             CceecCeEEEEEee
Q psy2160         287 GYEIRGKKIKVERA  300 (773)
Q Consensus       287 g~~l~g~~I~V~~A  300 (773)
                      |..|.|++|+|.++
T Consensus        90 g~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           90 NRWFNGQPIHAELS  103 (104)
T ss_dssp             TCEETTEECCEEEC
T ss_pred             CCEECCEEEEEEEc
Confidence            99999999999875

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.19  E-value=2e-11  Score=124.58  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=70.4

Q ss_pred             CCCCEEEEcCCCCCC---------CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH
Q psy2160         498 QENTKVYVSNLPLDL---------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS  568 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~---------t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~  568 (773)
                      ..+++|||+|||..+         |+++|+.+|++||.|.        +|+|+.+      +|||||+|.+.++|..|++
T Consensus       132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~--------~v~v~~~------kG~AFV~F~~~~~Ae~A~~  197 (240)
T 3u1l_A          132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID--------RIRYVES------KNCGFVKFKYQANAEFAKE  197 (240)
T ss_dssp             CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE--------EEEEEGG------GTEEEEEESSHHHHHHHHH
T ss_pred             cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE--------EEEEECC------CCEEEEEeCCHHHHHHHHH
Confidence            467999999999998         7999999999999999        7998853      8999999999999999999


Q ss_pred             HhCCcee------------cCeEEEEEEccc
Q psy2160         569 ILDGYEI------------RGKKIKVERAKF  587 (773)
Q Consensus       569 ~lng~~i------------~g~~i~V~~a~~  587 (773)
                      .|+|..|            .|+.|.|.+|..
T Consensus       198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~  228 (240)
T 3u1l_A          198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANE  228 (240)
T ss_dssp             HHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred             HhCCCEEeccccccccccCCCCEEEEEEccC
Confidence            9999999            899999999983

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.19  E-value=2.1e-11  Score=124.56  Aligned_cols=75  Identities=15%  Similarity=0.261  Sum_probs=70.3

Q ss_pred             CCccEEEEcCCCCCC---------CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH
Q psy2160         213 EESTKVYVSNLPLDL---------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS  283 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~---------te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~  283 (773)
                      +.+++|||+|||..+         |+++|+++|++||.|..        |+|+.      ++|||||+|.+.++|..|++
T Consensus       132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--------v~v~~------~kG~AFV~F~~~~~Ae~A~~  197 (240)
T 3u1l_A          132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--------IRYVE------SKNCGFVKFKYQANAEFAKE  197 (240)
T ss_dssp             CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred             cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--------EEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence            378999999999998         79999999999999998        99985      37899999999999999999


Q ss_pred             HcCCcee------------cCeEEEEEeec
Q psy2160         284 ILDGYEI------------RGKKIKVERAK  301 (773)
Q Consensus       284 ~lng~~l------------~g~~I~V~~A~  301 (773)
                      .|+|..|            .|+.|.|.+|.
T Consensus       198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~  227 (240)
T 3u1l_A          198 AMSNQTLLLPSDKEWDDRREGTGLLVKWAN  227 (240)
T ss_dssp             HHTTCCCCCTTSTTGGGGGGSCCCEEEECC
T ss_pred             HhCCCEEeccccccccccCCCCEEEEEEcc
Confidence            9999999            89999999987

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.15  E-value=8.3e-11  Score=119.64  Aligned_cols=82  Identities=28%  Similarity=0.567  Sum_probs=72.7

Q ss_pred             CCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC--------CCCCcEEEEEecCHHHHHHHHHHhC
Q psy2160         633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD--------KHPEGVAQIFFKEPEAADACRELLN  704 (773)
Q Consensus       633 ~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~--------~~~~G~afV~F~~~e~A~~Ai~~ln  704 (773)
                      .++++.+.|++.+.++.+      ++.++|+++|++||.|.+|.|++        +.+.|++||+|.+.++|.+|+..||
T Consensus       123 ~s~v~~l~n~v~~~e~~~------e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~  196 (222)
T 3dxb_A          123 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN  196 (222)
T ss_dssp             BCSEEEEESSCCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             ccccchhhcCCCHHHHHH------HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence            458999999999877654      34689999999999999998873        2567999999999999999999999


Q ss_pred             CceeCCeEEEEEEecC
Q psy2160         705 GRWFGQRQITAETWDG  720 (773)
Q Consensus       705 Gr~f~Gr~l~v~~~dg  720 (773)
                      ||+|+||.|.|.||+.
T Consensus       197 gr~~~gr~i~~~~~~~  212 (222)
T 3dxb_A          197 GRWFAGRKVVAEVYDQ  212 (222)
T ss_dssp             TCBSSSSBCEEEECCH
T ss_pred             CceECCeEEEEEEcCH
Confidence            9999999999999884

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=4.3e-09  Score=92.82  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=62.6

Q ss_pred             CCEEEEcCCC-------CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         500 NTKVYVSNLP-------LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       500 ~~~l~V~nLp-------~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      .++|.|.-.+       .++|+++|+++|++||.|.        .|.|+     ++++|||||+|.+.++|..||+.+++
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~--------~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~   76 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL--------NLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG   76 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE--------EEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE--------EEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence            4567776554       4689999999999999999        78887     35799999999999999999988655


Q ss_pred             ceecCeEEEEEEcccc
Q psy2160         573 YEIRGKKIKVERAKFT  588 (773)
Q Consensus       573 ~~i~g~~i~V~~a~~~  588 (773)
                        +.|++|+|.+|+..
T Consensus        77 --~~g~~l~V~~a~~~   90 (100)
T 2d9o_A           77 --LVDNPLKISWLEGQ   90 (100)
T ss_dssp             --CSSSBCEEECSSCC
T ss_pred             --CCCCeEEEEEccCC
Confidence              67999999999843

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=5.2e-09  Score=92.29  Aligned_cols=73  Identities=16%  Similarity=0.233  Sum_probs=61.1

Q ss_pred             ccEEEEcCCC-------CCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         215 STKVYVSNLP-------LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       215 ~~~VyV~nLP-------~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      ..+|-|.-.+       .++|+++|+++|++||.|..        |.|+     ++++|||||+|.+.++|..||+.+++
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~--------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~   76 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN--------LVLS-----SKKPGTAVVEFATVKAAELAVQNEVG   76 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE--------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE--------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence            3455555443       56999999999999999998        8887     57899999999999999999997554


Q ss_pred             ceecCeEEEEEeecc
Q psy2160         288 YEIRGKKIKVERAKF  302 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~  302 (773)
                        +.|++|+|.+|..
T Consensus        77 --~~g~~l~V~~a~~   89 (100)
T 2d9o_A           77 --LVDNPLKISWLEG   89 (100)
T ss_dssp             --CSSSBCEEECSSC
T ss_pred             --CCCCeEEEEEccC
Confidence              6799999998874

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.87  E-value=2.4e-09  Score=115.10  Aligned_cols=74  Identities=23%  Similarity=0.389  Sum_probs=63.6

Q ss_pred             CccEEEEcC--CCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSN--LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~n--LP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ...+|||+|  |+..+|+++|+++|++||.|..        |.|..      .||||||+|.+.++|.+||+.|||..+.
T Consensus        17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~   82 (345)
T 3tht_A           17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV   82 (345)
T ss_dssp             CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence            568999999  5789999999999999999987        77643      4799999999999999999999999883


Q ss_pred             ---Ce--EEEEEeec
Q psy2160         292 ---GK--KIKVERAK  301 (773)
Q Consensus       292 ---g~--~I~V~~A~  301 (773)
                         |+  +|.|.++.
T Consensus        83 ~~~g~~~~ly~~~~~   97 (345)
T 3tht_A           83 DDLGQKITLYLNFVE   97 (345)
T ss_dssp             CTTSCEEECEEEECS
T ss_pred             cccCCceEEEEEEee
Confidence               44  57776653

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=98.86  E-value=3.1e-09  Score=114.23  Aligned_cols=76  Identities=22%  Similarity=0.372  Sum_probs=64.9

Q ss_pred             CCCCCEEEEcC--CCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         497 AQENTKVYVSN--LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       497 ~~~~~~l~V~n--Lp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ..+..+|||+|  |+..+|+++|+++|++||.|.        +|.+..      ++|||||+|.+.++|++||+.|||..
T Consensus        15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~--------~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~   80 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE   80 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE--------EEECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred             CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence            45678999999  578999999999999999998        666642      37999999999999999999999999


Q ss_pred             ec---Ce--EEEEEEcc
Q psy2160         575 IR---GK--KIKVERAK  586 (773)
Q Consensus       575 i~---g~--~i~V~~a~  586 (773)
                      +.   |+  .|.|.++.
T Consensus        81 ~~~~~g~~~~ly~~~~~   97 (345)
T 3tht_A           81 VVDDLGQKITLYLNFVE   97 (345)
T ss_dssp             EECTTSCEEECEEEECS
T ss_pred             cccccCCceEEEEEEee
Confidence            84   45  67777764

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=3.9e-08  Score=83.71  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR  711 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr  711 (773)
                      ++..+|+|...++..+   +.-+=.+|..+|.+.|++||.|..|.+..+.    +||.|.+.++|.+||. |||..++||
T Consensus         5 Ppd~tv~V~~~~~~~~---~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr   76 (91)
T 2dnr_A            5 SSGGTVLVSIKSSLPE---NNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR   76 (91)
T ss_dssp             CSSCEEEEEEECSSTT---TCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred             CCCCeEEEEeccCccc---cccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence            4567888888764211   1112234568899999999999999987743    8999999999999999 999999999


Q ss_pred             EEEEEEec
Q psy2160         712 QITAETWD  719 (773)
Q Consensus       712 ~l~v~~~d  719 (773)
                      .|+|.+..
T Consensus        77 ~LkV~lkt   84 (91)
T 2dnr_A           77 TITIALKS   84 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99998843

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.71  E-value=4.6e-08  Score=99.23  Aligned_cols=82  Identities=28%  Similarity=0.572  Sum_probs=72.3

Q ss_pred             CCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----C----CCCeEEEEEecCHHHHHHHHHHh
Q psy2160         347 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----K----HPEGVAQIFFKEPEAADACRELL  418 (773)
Q Consensus       347 ~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~----~~~G~afV~F~~~e~A~~Ai~~l  418 (773)
                      ...+++.+.|++++.++.+      ++.++|+++|++||.|.+|.++.    .    ++.|++||+|.+.++|.+|+..|
T Consensus       122 ~~s~v~~l~n~v~~~e~~~------e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l  195 (222)
T 3dxb_A          122 MESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL  195 (222)
T ss_dssp             CBCSEEEEESSCCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred             cccccchhhcCCCHHHHHH------HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence            3467899999998888765      35689999999999999998862    1    56799999999999999999999


Q ss_pred             CCcccCCeeEEEEecC
Q psy2160         419 NGRWFGQRQITAETWD  434 (773)
Q Consensus       419 ng~~~~Gr~I~v~~~~  434 (773)
                      ||++|+||+|.+.+++
T Consensus       196 ~gr~~~gr~i~~~~~~  211 (222)
T 3dxb_A          196 NGRWFAGRKVVAEVYD  211 (222)
T ss_dssp             TTCBSSSSBCEEEECC
T ss_pred             cCceECCeEEEEEEcC
Confidence            9999999999999875

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.63  E-value=4.8e-08  Score=88.56  Aligned_cols=75  Identities=11%  Similarity=0.081  Sum_probs=66.7

Q ss_pred             CCccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecC-hHHHHHHHHHcC--Cc
Q psy2160         213 EESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK-KESVDLALSILD--GY  288 (773)
Q Consensus       213 ~~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~-~esA~~Al~~ln--g~  288 (773)
                      +.++.|||+||+.+ ++.++|+++|+.||.|..        |.+.++..      .|||.|.+ ..+|..|+..||  +.
T Consensus        16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~--------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~   81 (121)
T 1owx_A           16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL   81 (121)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred             cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence            38899999999999 999999999999999998        88887765      59999999 799999999994  77


Q ss_pred             eecCeEEEEEeec
Q psy2160         289 EIRGKKIKVERAK  301 (773)
Q Consensus       289 ~l~g~~I~V~~A~  301 (773)
                      .|.|..++++...
T Consensus        82 ~i~g~~~~~evL~   94 (121)
T 1owx_A           82 QLRNKEVTWEVLE   94 (121)
T ss_dssp             CTTSSSEEEEECC
T ss_pred             EEeCcEEEEEECC
Confidence            8899888887644

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=8.9e-08  Score=81.48  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=60.2

Q ss_pred             CCCEEEEcCCCC----CCCH----HHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh
Q psy2160         499 ENTKVYVSNLPL----DLTQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL  570 (773)
Q Consensus       499 ~~~~l~V~nLp~----~~t~----e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l  570 (773)
                      +..+|+|.-+|.    ..-.    .+|.+.|+.||.|.        .+++..|.        +||+|.+.++|.+||+ |
T Consensus         6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--------~vr~~~d~--------~fVtF~d~~sAlaAi~-m   68 (91)
T 2dnr_A            6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI--------LIRFVEDK--------MWVTFLEGSSALNVLS-L   68 (91)
T ss_dssp             SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE--------EEEECSSS--------EEEEESSHHHHHHGGG-G
T ss_pred             CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE--------EEEEecCC--------EEEEECChHHHHHHHh-c
Confidence            456888877762    2333    67999999999888        78998763        8999999999999997 9


Q ss_pred             CCceecCeEEEEEEcc
Q psy2160         571 DGYEIRGKKIKVERAK  586 (773)
Q Consensus       571 ng~~i~g~~i~V~~a~  586 (773)
                      ||..+.|+.|+|+.+.
T Consensus        69 nG~~v~Gr~LkV~lkt   84 (91)
T 2dnr_A           69 NGKELLNRTITIALKS   84 (91)
T ss_dssp             TTCEETTEEEEEEECC
T ss_pred             CCeEeCCeEEEEEeCC
Confidence            9999999999999987

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.54  E-value=1.3e-07  Score=80.90  Aligned_cols=80  Identities=10%  Similarity=0.173  Sum_probs=62.9

Q ss_pred             CCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160         631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  710 (773)
Q Consensus       631 ~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G  710 (773)
                      .++..+|+|..++...  ++..-|=.+|..+|.+.|+.||.|..|.+....    +||.|.+.++|.+||. |||..++|
T Consensus        12 GPpD~Tv~V~~~~~~~--~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G   84 (95)
T 1ufw_A           12 GPLDATVVVNLQSPTL--EEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG   84 (95)
T ss_dssp             CCTTCEEEEEESSCCH--HHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred             CCCCCeEEEEecCCcc--cccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence            3566889998875321  111112234567899999999999999887743    9999999999999999 99999999


Q ss_pred             eEEEEEE
Q psy2160         711 RQITAET  717 (773)
Q Consensus       711 r~l~v~~  717 (773)
                      |.|+|.+
T Consensus        85 r~L~V~~   91 (95)
T 1ufw_A           85 RAVKISG   91 (95)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999976

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.53  E-value=1.3e-07  Score=85.77  Aligned_cols=75  Identities=11%  Similarity=0.083  Sum_probs=66.7

Q ss_pred             CCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCC-hHHHHHHHHHhC--Cc
Q psy2160         498 QENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK-KESVDLALSILD--GY  573 (773)
Q Consensus       498 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~-~e~A~~Ai~~ln--g~  573 (773)
                      ..++.|||+||+.+ ++.++|+++|+.||.|.        .|.+.++..      .|||.|.+ +.+|..|+..||  +.
T Consensus        16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~--------~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~   81 (121)
T 1owx_A           16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIK--------WIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL   81 (121)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE--------EEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred             cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE--------EEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence            46899999999999 99999999999999999        688887754      59999999 899999999995  78


Q ss_pred             eecCeEEEEEEcc
Q psy2160         574 EIRGKKIKVERAK  586 (773)
Q Consensus       574 ~i~g~~i~V~~a~  586 (773)
                      .|.|..++++...
T Consensus        82 ~i~g~~~~~evL~   94 (121)
T 1owx_A           82 QLRNKEVTWEVLE   94 (121)
T ss_dssp             CTTSSSEEEEECC
T ss_pred             EEeCcEEEEEECC
Confidence            8899988888765

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.37  E-value=5.9e-07  Score=76.79  Aligned_cols=70  Identities=17%  Similarity=0.322  Sum_probs=59.9

Q ss_pred             CCccEEEEcCCCCC-----CCH----HHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH
Q psy2160         213 EESTKVYVSNLPLD-----LTQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS  283 (773)
Q Consensus       213 ~~~~~VyV~nLP~~-----~te----~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~  283 (773)
                      |...||+|.-++.+     .-.    .+|.+.|+.||.|..        |++..|.        +||+|.+.++|.+||+
T Consensus        13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--------vr~v~d~--------~fVtF~d~~sAl~AI~   76 (95)
T 1ufw_A           13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--------VRINQGQ--------MLVTFADSHSALSVLD   76 (95)
T ss_dssp             CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--------EEEETTE--------EEEECSCSHHHHHHHH
T ss_pred             CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--------EEEecCc--------EEEEEcChHHHHHHHh
Confidence            46689999988743     222    568899999998887        9998764        8999999999999999


Q ss_pred             HcCCceecCeEEEEEe
Q psy2160         284 ILDGYEIRGKKIKVER  299 (773)
Q Consensus       284 ~lng~~l~g~~I~V~~  299 (773)
                       |||..+.||.|+|+.
T Consensus        77 -ldG~~v~Gr~L~V~~   91 (95)
T 1ufw_A           77 -VDGMKVKGRAVKISG   91 (95)
T ss_dssp             -GGGSEETTEEEEEEC
T ss_pred             -cCCeeeCCeEEEEec
Confidence             999999999999965

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.29  E-value=2e-06  Score=74.84  Aligned_cols=71  Identities=23%  Similarity=0.275  Sum_probs=64.7

Q ss_pred             CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcC-----CceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCcee
Q psy2160         634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC-----GHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF  708 (773)
Q Consensus       634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~f-----G~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f  708 (773)
                      .++|.|.|+++.  +.+         ..|+.+.+++     |.|.+|.+.+.+  |-|+|.|.+...|.+|..+|||..|
T Consensus        21 ~rtiaL~~ipDt--vnd---------arIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef   87 (117)
T 2l9w_A           21 ETLICLFPLSDK--VSP---------SLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQF   87 (117)
T ss_dssp             TSCEEEECCCTT--CCH---------HHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred             CcEEEEecCCCC--CCH---------HHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeee
Confidence            589999999876  554         7899999999     999999998877  8899999999999999999999999


Q ss_pred             CCeEEEEEE
Q psy2160         709 GQRQITAET  717 (773)
Q Consensus       709 ~Gr~l~v~~  717 (773)
                      .||+|+|.-
T Consensus        88 ~gr~Lr~gT   96 (117)
T 2l9w_A           88 QGKVIRSGT   96 (117)
T ss_dssp             TTEEEEEEC
T ss_pred             cCeEEEecC
Confidence            999999954

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.21  E-value=7.4e-06  Score=71.32  Aligned_cols=76  Identities=20%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhc-----CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKC-----GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~-----G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ....++|-+-|||..++...|+.+...+     |.|.        +|.|..|..      =|+|+|.+...|-+|.-.|+
T Consensus        18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~--------KI~L~pDH~------GAivef~d~~~AgKasLaL~   83 (117)
T 2l9w_A           18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR--------KILLVSDFN------GAIIIFRDSKFAAKMLMILN   83 (117)
T ss_dssp             TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS--------EEEEETTTT------EEEEECSCHHHHHHHHHHHS
T ss_pred             ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee--------EEEEecCCC------ceEEEEccchhhHHHHhhcC
Confidence            3457899999999999999999999999     9888        788887754      49999999999999999999


Q ss_pred             CceecCeEEEEEEcc
Q psy2160         572 GYEIRGKKIKVERAK  586 (773)
Q Consensus       572 g~~i~g~~i~V~~a~  586 (773)
                      |..|.|++|+|.-..
T Consensus        84 G~ef~gr~Lr~gTv~   98 (117)
T 2l9w_A           84 GSQFQGKVIRSGTIN   98 (117)
T ss_dssp             SEEETTEEEEEECHH
T ss_pred             CeeecCeEEEecCHH
Confidence            999999999999655

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.73  E-value=6.6e-05  Score=65.27  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=65.2

Q ss_pred             CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy2160         634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI  713 (773)
Q Consensus       634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l  713 (773)
                      +.+|+|.|| ++..+..     .++++.++++|..|+.+......+.-  .-+.|.|.++++|.+|...|+|..|.|++|
T Consensus         5 pntLiitnl-~~~vF~~-----~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~   76 (104)
T 1wey_A            5 SSGLIACVA-NDDVFSE-----SETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFLGKEM   76 (104)
T ss_dssp             CCEEEEECC-CGGGGST-----TTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred             CceEEEecC-CHHHcCC-----HHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence            478999999 5544443     34578999999999998887766633  468999999999999999999999999999


Q ss_pred             EEEEec
Q psy2160         714 TAETWD  719 (773)
Q Consensus       714 ~v~~~d  719 (773)
                      +|+|..
T Consensus        77 r~YFgq   82 (104)
T 1wey_A           77 KLYFAQ   82 (104)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            999854

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.23  E-value=0.00073  Score=58.72  Aligned_cols=75  Identities=13%  Similarity=0.097  Sum_probs=63.8

Q ss_pred             CCCEEEEcCCCCCC-C----HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160         499 ENTKVYVSNLPLDL-T----QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  573 (773)
Q Consensus       499 ~~~~l~V~nLp~~~-t----~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~  573 (773)
                      ..++|+|.||+.++ +    .+.++++|..|+.+.        .....+.-      .-..|.|.++++|.+|-..||+.
T Consensus         4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--------tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~   69 (104)
T 1wey_A            4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDT--------TFQYFKSF------KRVRINFSNPLSAADARLRLHKT   69 (104)
T ss_dssp             CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--------EEEEETTT------TEEEEECSSTTHHHHHHHTSTTS
T ss_pred             CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--------ceeecCcc------eEEEEEeCChHHHHHHHHHhccc
Confidence            46899999998876 2    267899999999988        56666442      35799999999999999999999


Q ss_pred             eecCeEEEEEEccc
Q psy2160         574 EIRGKKIKVERAKF  587 (773)
Q Consensus       574 ~i~g~~i~V~~a~~  587 (773)
                      .|.|+.|+|-+|+.
T Consensus        70 ~f~g~~~r~YFgq~   83 (104)
T 1wey_A           70 EFLGKEMKLYFAQT   83 (104)
T ss_dssp             EETTEECEEECCCC
T ss_pred             eecCceeEEEecCC
Confidence            99999999999983

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.79  E-value=0.0022  Score=54.77  Aligned_cols=59  Identities=15%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160         212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  286 (773)
Q Consensus       212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln  286 (773)
                      .|....||+=+.|+.....||.++|+.||.|.         |+.+-|-       -|||.|.+++.|..|+.++.
T Consensus        12 ~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           12 QPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CCCCCSEEEEECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence            34445565559999999999999999999777         7888765       49999999999999999763

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.58  E-value=0.0052  Score=52.50  Aligned_cols=56  Identities=16%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ....++| ++|+.....+|.++|+.||.|.         |+.+-|-       .|||.|.+++.|..|+..+.
T Consensus        15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred             CCeEEEE-eCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence            3456677 9999999999999999999886         8888663       59999999999999998763

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.57  E-value=0.011  Score=50.34  Aligned_cols=79  Identities=24%  Similarity=0.299  Sum_probs=59.3

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCC--CcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK--DFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg--~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      ++|-|++||+.+|++++.+.++....+.-        ...+..+.+.  ..-.-|||.|.+.+++..-.+.++|..|.+ 
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~   73 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceE--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence            68999999999999999999998876543        3443333211  123569999999999999999999999853 


Q ss_pred             ----eEEEEEeecc
Q psy2160         293 ----KKIKVERAKF  302 (773)
Q Consensus       293 ----~~I~V~~A~~  302 (773)
                          .+-.|+.|-+
T Consensus        74 kg~~~~a~VE~AP~   87 (91)
T 1uw4_A           74 KGQEYPAIVEFAPF   87 (91)
T ss_dssp             TCCEEECEEEECSS
T ss_pred             CCCEeeeEEEEcCC
Confidence                3345666654

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=96.38  E-value=0.018  Score=49.09  Aligned_cols=79  Identities=25%  Similarity=0.341  Sum_probs=59.4

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-C-CCcceEEEEeCChHHHHHHHHHhCCceec--
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-K-DFKGDALCTYIKKESVDLALSILDGYEIR--  576 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g-~~kG~afV~f~~~e~A~~Ai~~lng~~i~--  576 (773)
                      +.|.|++||+.+|++++.+.++..+.+.        .........+ + ..-.-|+|.|.+.+++..-.+.++|+.|.  
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~   73 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD--------YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEE--------EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccce--------EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence            5799999999999999999999887654        3333333221 1 12356999999999999999999999986  


Q ss_pred             -Ce--EEEEEEccc
Q psy2160         577 -GK--KIKVERAKF  587 (773)
Q Consensus       577 -g~--~i~V~~a~~  587 (773)
                       |.  +-.|++|-+
T Consensus        74 kg~~~~a~VE~AP~   87 (91)
T 1uw4_A           74 KGQEYPAIVEFAPF   87 (91)
T ss_dssp             TCCEEECEEEECSS
T ss_pred             CCCEeeeEEEEcCC
Confidence             32  335777764

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=96.38  E-value=0.0096  Score=53.16  Aligned_cols=70  Identities=16%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC-eE
Q psy2160         634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ-RQ  712 (773)
Q Consensus       634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G-r~  712 (773)
                      .+-|.|...+.. .           ...|..+|++||.|.+.....+  .....|+|.++.+|.+|+.. ||+.|+| -.
T Consensus        24 ~~wVtVFGFp~~-~-----------~~~VL~~F~~~G~Iv~~~~~~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~m   88 (119)
T 1wwh_A           24 DTWVTVFGFPQA-S-----------ASYILLQFAQYGNILKHVMSNT--GNWMHIRYQSKLQARKALSK-DGRIFGESIM   88 (119)
T ss_dssp             GGEEEEECCCGG-G-----------HHHHHHHHHTTSCEEEEEECSS--SSEEEEEESSHHHHHHHHTT-TTCEETTTEE
T ss_pred             CCEEEEECCCHH-H-----------HHHHHHHHHhhCcEEEeccCCC--CCeEEEEeCCHHHHHHHHHh-CCeEecCCEE
Confidence            467777776432 2           2789999999999998876433  37899999999999999997 9999985 66


Q ss_pred             EEEEEe
Q psy2160         713 ITAETW  718 (773)
Q Consensus       713 l~v~~~  718 (773)
                      |-|..+
T Consensus        89 IGV~p~   94 (119)
T 1wwh_A           89 IGVKPC   94 (119)
T ss_dssp             CEEEEC
T ss_pred             EEEEEC
Confidence            666553

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.18  E-value=0.017  Score=50.02  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhh----c-CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQK----C-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY  288 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~----~-G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~  288 (773)
                      ...+|.|.|||.++.++.|.-+|..    . |.|..        |...     +   +-|+|+|.+...|+..|+ ....
T Consensus         7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--------v~~~-----~---~~AvItF~d~~va~rVL~-k~~H   69 (104)
T 2dhx_A            7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--------WQRL-----G---CGGVLTFREPADAERVLA-QADH   69 (104)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--------EEEE-----T---TEEEEEESSHHHHHHHHT-CSCC
T ss_pred             CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--------EEEc-----C---CcEEEEEcChHHHHHHhc-CCcc
Confidence            4689999999999999999999986    2 55554        4443     2   369999999999999987 4467


Q ss_pred             eecCeEEEEEee
Q psy2160         289 EIRGKKIKVERA  300 (773)
Q Consensus       289 ~l~g~~I~V~~A  300 (773)
                      .|.|.+|.|...
T Consensus        70 ~L~~~~LsV~P~   81 (104)
T 2dhx_A           70 ELHGAQLSLRPA   81 (104)
T ss_dssp             BSSSSBCEEEEC
T ss_pred             eecCeEEEEEcC
Confidence            789999999653

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=96.09  E-value=0.0054  Score=52.58  Aligned_cols=55  Identities=16%  Similarity=0.311  Sum_probs=47.3

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  286 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln  286 (773)
                      ..||+-+.|+.....||..+|+.||.|.         |+.+-|-       -|||.|.+++.|..|+.++.
T Consensus         6 ~HV~~l~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            6 DHVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEEEEEECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred             CeEEEEeCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence            4555559999999999999999999776         7877664       49999999999999999765

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=96.04  E-value=0.01  Score=53.75  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=48.9

Q ss_pred             HHHHHHHhcCCceeE-EEecC----------------C-CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160         660 QDLREECSKCGHVKK-VVLHD----------------K-HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  720 (773)
Q Consensus       660 edl~~~f~~fG~V~~-v~i~~----------------~-~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg  720 (773)
                      ..|.++|++||.|.. +.+.+                . .....+.|+|.++.+|.+|++. ||+.|+|..|-|..|+.
T Consensus        21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~~   98 (132)
T 3p3d_A           21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYTK   98 (132)
T ss_dssp             HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECCH
T ss_pred             HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECCH
Confidence            789999999999875 32221                0 1247899999999999999997 99999999999988764

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=95.97  E-value=0.0061  Score=52.24  Aligned_cols=54  Identities=17%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ..++| ++|+.....+|..+|+.||.|.         |+.+-|-       .|||.|.+++.|..|+..+.
T Consensus         7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEEEE-ECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred             eEEEE-eCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence            45666 9999999999999999999885         8888663       59999999999999999775

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.90  E-value=0.04  Score=47.62  Aligned_cols=72  Identities=17%  Similarity=0.239  Sum_probs=57.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHh----c-CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQK----C-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~----~-G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ....+|.|.|||+++.++.|.-+|+.    - |.|.        ++....        +-|+|+|.+.+.|++.+. -..
T Consensus         6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~--------~v~~~~--------~~AvItF~d~~va~rVL~-k~~   68 (104)
T 2dhx_A            6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL--------SWQRLG--------CGGVLTFREPADAERVLA-QAD   68 (104)
T ss_dssp             CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE--------EEEEET--------TEEEEEESSHHHHHHHHT-CSC
T ss_pred             cCccEEEEECCCCCCChhHheEEEeCCCcCCCceee--------EEEEcC--------CcEEEEEcChHHHHHHhc-CCc
Confidence            45689999999999999999999997    2 4454        455432        469999999999999884 446


Q ss_pred             ceecCeEEEEEEcc
Q psy2160         573 YEIRGKKIKVERAK  586 (773)
Q Consensus       573 ~~i~g~~i~V~~a~  586 (773)
                      +.|.|..|.|....
T Consensus        69 H~L~~~~LsV~P~~   82 (104)
T 2dhx_A           69 HELHGAQLSLRPAP   82 (104)
T ss_dssp             CBSSSSBCEEEECC
T ss_pred             ceecCeEEEEEcCC
Confidence            78889999998755

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=95.84  E-value=0.019  Score=51.31  Aligned_cols=71  Identities=21%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      ..+.|.|-|.|+.. ...|..+|++||.|.+        ...   .. +  ...-.|.|.+..+|.+||. .||..|.| 
T Consensus        23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~--------~~~---~~-~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~   86 (119)
T 1wwh_A           23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILK--------HVM---SN-T--GNWMHIRYQSKLQARKALS-KDGRIFGES   86 (119)
T ss_dssp             GGGEEEEECCCGGG-HHHHHHHHHTTSCEEE--------EEE---CS-S--SSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred             CCCEEEEECCCHHH-HHHHHHHHHhhCcEEE--------ecc---CC-C--CCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence            67899999999985 6788889999999997        443   11 2  2388999999999999998 89999975 


Q ss_pred             eEEEEEee
Q psy2160         293 KKIKVERA  300 (773)
Q Consensus       293 ~~I~V~~A  300 (773)
                      -.|-|.+.
T Consensus        87 ~mIGV~p~   94 (119)
T 1wwh_A           87 IMIGVKPC   94 (119)
T ss_dssp             EECEEEEC
T ss_pred             EEEEEEEC
Confidence            66667553

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=94.80  E-value=0.04  Score=49.84  Aligned_cols=86  Identities=15%  Similarity=0.124  Sum_probs=59.3

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEE--EE-e--cCCCC-CCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIK--LY-T--DPYTK-DFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~--l~-~--d~~tg-~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ..+.|.|-+.|++.+ ..+...|++||.|.++...-.+...  +- .  ..-.+ ...++..|+|.++.+|.+|| ..||
T Consensus         6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG   83 (132)
T 3p3d_A            6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG   83 (132)
T ss_dssp             --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred             CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence            467899999987655 5688899999999875322111110  00 0  00000 12568899999999999999 5999


Q ss_pred             ceecCeEEEEEEcc
Q psy2160         573 YEIRGKKIKVERAK  586 (773)
Q Consensus       573 ~~i~g~~i~V~~a~  586 (773)
                      ..|.|..|-|.+..
T Consensus        84 ~ii~G~mIGV~Py~   97 (132)
T 3p3d_A           84 AVFNGVLLGVIPYT   97 (132)
T ss_dssp             CEETTEECEEEECC
T ss_pred             eEeCcEEEEEEECC
Confidence            99999988898876

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=94.59  E-value=0.034  Score=47.70  Aligned_cols=81  Identities=21%  Similarity=0.239  Sum_probs=54.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC-CCC-cceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKD-FKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~-tg~-~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      .+-+|-|+.||+.+|++++.+.++.+-.+..        ...+..+. .+. .-.-|||.|.+.+++..-.+.++|..|.
T Consensus         8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~   79 (97)
T 2l08_A            8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--------FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL   79 (97)
T ss_dssp             CCCCEEEECCCSCSCHHHHTTTTSCCSSEEE--------CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred             cceeEEEeCCCCCCCHHHHHHHhCCcCccce--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence            4568999999999999998877765432211        11111111 011 1235899999999999999999999985


Q ss_pred             C-----eEEEEEeecc
Q psy2160         292 G-----KKIKVERAKF  302 (773)
Q Consensus       292 g-----~~I~V~~A~~  302 (773)
                      +     .+-.|+.|-+
T Consensus        80 D~kg~~~~a~VE~APy   95 (97)
T 2l08_A           80 DSKGLEYPAVVEFAPF   95 (97)
T ss_dssp             CTTCCEEEEEEEECCC
T ss_pred             eCCCCEeeeEEEecCC
Confidence            3     4556776654

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=93.34  E-value=0.11  Score=44.67  Aligned_cols=80  Identities=20%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CC-CCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TK-DFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg-~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .-.|.|+.||+.+|++++.+.++..-.+.        ......... .+ ..-.-|+|.|.+.+++..-.+.++|..|.+
T Consensus         9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D   80 (97)
T 2l08_A            9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHD--------YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD   80 (97)
T ss_dssp             CCCEEEECCCSCSCHHHHTTTTSCCSSEE--------ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred             ceeEEEeCCCCCCCHHHHHHHhCCcCccc--------eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence            45799999999999999887777543322        111111110 01 112468999999999999999999999863


Q ss_pred             ---e--EEEEEEccc
Q psy2160         578 ---K--KIKVERAKF  587 (773)
Q Consensus       578 ---~--~i~V~~a~~  587 (773)
                         .  +-.|++|.+
T Consensus        81 ~kg~~~~a~VE~APy   95 (97)
T 2l08_A           81 SKGLEYPAVVEFAPF   95 (97)
T ss_dssp             TTCCEEEEEEEECCC
T ss_pred             CCCCEeeeEEEecCC
Confidence               2  556777764

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=93.24  E-value=0.057  Score=59.82  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=42.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS  283 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~  283 (773)
                      ..++|||. .|..+++.+|.++|++||.|..        +.++.+.  |   -||+|+|.+.++|..++.
T Consensus        52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--------~~~~~~~--g---~~~~vef~~~~~~~~~~~  107 (464)
T 3pq1_A           52 AQRTVLIH-CPEKISENKFLKYLSQFGPINN--------HFFYESF--G---LYAVVEFCQKESIGSLQN  107 (464)
T ss_dssp             HHTEEEEE-ECCC---CHHHHHHGGGSCCCC--------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred             hcceEEEE-cCCCCCHHHHHHHHHhcCCcce--------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence            34899998 7999999999999999999998        8888653  3   599999999999997765

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=92.91  E-value=0.067  Score=59.29  Aligned_cols=55  Identities=16%  Similarity=0.291  Sum_probs=41.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS  568 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~  568 (773)
                      .++|+|. .|..+++.+|.++|++||.|.        ++.++.+.     ..||+|+|.+.+++..++.
T Consensus        53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~--------~~~~~~~~-----g~~~~vef~~~~~~~~~~~  107 (464)
T 3pq1_A           53 QRTVLIH-CPEKISENKFLKYLSQFGPIN--------NHFFYESF-----GLYAVVEFCQKESIGSLQN  107 (464)
T ss_dssp             HTEEEEE-ECCC---CHHHHHHGGGSCCC--------CEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred             cceEEEE-cCCCCCHHHHHHHHHhcCCcc--------eEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence            4799997 799999999999999999999        67777653     3799999999999997764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	773
d2dita1	99	d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma	2e-21
d2dita1	99	d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma	2e-21
d2cpea1	101	d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma	7e-15
d2cpea1	101	d.58.7.1 (A:353-453) RNA-binding protein EWS {Huma	2e-14
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	2e-13
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	4e-13
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	1e-07
d1x4aa1	95	d.58.7.1 (A:9-103) Splicing factor, arginine/serin	1e-07
d1o0pa_	104	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	2e-12
d1o0pa_	104	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	2e-12
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	2e-12
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	7e-12
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	8e-05
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	8e-05
d2u2fa_	85	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	8e-12
d2u2fa_	85	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	1e-11
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	1e-11
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	2e-11
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	3e-05
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	3e-05
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	2e-11
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	2e-11
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	0.002
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	0.002
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	6e-11
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	7e-11
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	0.003
d2cqpa1	86	d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mous	0.003
d2cq0a1	90	d.58.7.1 (A:231-320) Eukaryotic translation initia	9e-11
d2cq0a1	90	d.58.7.1 (A:231-320) Eukaryotic translation initia	5e-10
d1whwa_	99	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	1e-10
d1whwa_	99	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	3e-10
d2disa1	96	d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {	1e-10
d2disa1	96	d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {	1e-09
d1u2fa_	90	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	1e-10
d1u2fa_	90	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	1e-10
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	1e-10
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	3e-10
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	1e-10
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	7e-10
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	7e-04
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	7e-04
d1x5sa1	90	d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote	2e-10
d1x5sa1	90	d.58.7.1 (A:8-97) Cold-inducible RNA-binding prote	2e-10
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	3e-10
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	3e-10
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	7e-05
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	7e-05
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	4e-10
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	4e-10
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	5e-10
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	1e-09
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	6e-04
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	6e-04
d1rk8a_	88	d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr	5e-10
d1rk8a_	88	d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr	2e-09
d1rk8a_	88	d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr	0.001
d1rk8a_	88	d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Dr	0.001
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	6e-10
d1uawa_	77	d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [Tax	6e-10
d1u6fa1	139	d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa	6e-10
d1u6fa1	139	d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa	6e-08
d1wg1a_	88	d.58.7.1 (A:) Probable RNA-binding protein KIAA157	8e-10
d1wg1a_	88	d.58.7.1 (A:) Probable RNA-binding protein KIAA157	3e-09
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	1e-09
d1x4ba1	103	d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucle	6e-09
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	1e-09
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	4e-09
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	1e-09
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	4e-09
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	4e-05
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	4e-05
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	2e-09
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	9e-09
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	0.001
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	0.001
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	3e-09
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-09
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-06
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-06
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	3e-09
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	3e-09
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	4e-09
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	8e-09
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	0.002
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	0.002
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	5e-09
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	5e-09
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	2e-04
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	2e-04
d1x5ta1	83	d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu	5e-09
d1x5ta1	83	d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Hu	5e-09
d2cq3a1	93	d.58.7.1 (A:110-202) RNA-binding protein 9 {Human	6e-09
d2cq3a1	93	d.58.7.1 (A:110-202) RNA-binding protein 9 {Human	1e-08
d2cpza1	102	d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin	7e-09
d2cpza1	102	d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin	1e-08
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	7e-09
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	8e-09
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	3e-04
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	3e-04
d2cpxa1	102	d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41	7e-09
d2cpxa1	102	d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41	1e-07
d2cpia1	89	d.58.7.1 (A:101-189) E3 ubiquitin protein ligase C	2e-08
d2cpia1	89	d.58.7.1 (A:101-189) E3 ubiquitin protein ligase C	2e-08
d1p1ta_	104	d.58.7.1 (A:) Cleavage stimulation factor, 64 kda	2e-08
d1p1ta_	104	d.58.7.1 (A:) Cleavage stimulation factor, 64 kda	2e-08
d1wi8a_	104	d.58.7.1 (A:) Eukaryotic translation initiation fa	2e-08
d1wi8a_	104	d.58.7.1 (A:) Eukaryotic translation initiation fa	9e-08
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	3e-08
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	8e-08
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	4e-04
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	4e-04
d2cqha1	80	d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is	3e-08
d2cqha1	80	d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 is	3e-08
d1nu4a_	91	d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo	3e-08
d1nu4a_	91	d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo	4e-08
d2ghpa1	81	d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici	5e-08
d2ghpa1	81	d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici	1e-07
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	5e-08
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	7e-08
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	0.004
d2cqia1	90	d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sa	0.004
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	6e-08
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	6e-08
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	5e-05
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	5e-05
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	7e-08
d1x0fa1	75	d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0	7e-08
d2ghpa3	86	d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici	8e-08
d2ghpa3	86	d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splici	1e-07
d1hd0a_	75	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	9e-08
d1hd0a_	75	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	9e-08
d2cqda1	103	d.58.7.1 (A:1-103) RNA-binding region containing p	1e-07
d2cqda1	103	d.58.7.1 (A:1-103) RNA-binding region containing p	3e-07
d1x4ha1	98	d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (	1e-07
d1x4ha1	98	d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (	2e-07
d1fxla2	85	d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho	1e-07
d1fxla2	85	d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho	5e-07
d2cpya1	103	d.58.7.1 (A:536-638) RNA-binding protein 12 {Human	1e-07
d2cpya1	103	d.58.7.1 (A:536-638) RNA-binding protein 12 {Human	9e-07
d1wf0a_	88	d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {	2e-07
d1wf0a_	88	d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {	4e-07
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	2e-07
d2msta_	75	d.58.7.1 (A:) Neural RNA-binding protein Musashi-1	2e-07
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	2e-07
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	6e-07
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	3e-07
d1l3ka1	84	d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RN	5e-07
d2adca1	109	d.58.7.1 (A:335-443) Polypyrimidine tract-binding	3e-07
d2adca1	109	d.58.7.1 (A:335-443) Polypyrimidine tract-binding	5e-07
d1wg4a_	98	d.58.7.1 (A:) Splicing factor, arginine/serine-ric	3e-07
d1wg4a_	98	d.58.7.1 (A:) Splicing factor, arginine/serine-ric	4e-07
d1whya_	97	d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb	3e-07
d1whya_	97	d.58.7.1 (A:) Putative RNA-binding protein 15B, Rb	9e-07
d2cpda1	86	d.58.7.1 (A:223-308) APOBEC1 stimulating protein {	4e-07
d2cpda1	86	d.58.7.1 (A:223-308) APOBEC1 stimulating protein {	3e-06
d1l3ka2	79	d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1	5e-07
d1l3ka2	79	d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1	5e-07
d1wg5a_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	6e-07
d1wg5a_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	6e-07
d1x5oa1	101	d.58.7.1 (A:8-108) RNA-binding motif, single-stran	6e-07
d1x5oa1	101	d.58.7.1 (A:8-108) RNA-binding motif, single-stran	9e-07
d1weza_	102	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	7e-07
d1weza_	102	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	1e-06
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	1e-06
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	1e-06
d1x4ea1	72	d.58.7.1 (A:8-79) RNA-binding motif, single-strand	2e-06
d1x4ea1	72	d.58.7.1 (A:8-79) RNA-binding motif, single-strand	2e-06
d1whxa_	111	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	3e-06
d1whxa_	111	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	8e-06
d2bz2a1	79	d.58.7.1 (A:35-113) Negative elongation factor E,	4e-06
d2bz2a1	79	d.58.7.1 (A:35-113) Negative elongation factor E,	4e-06
d1fjeb1	91	d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesoc	1e-05
d1fjeb1	91	d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesoc	2e-05
d2adca2	88	d.58.7.1 (A:444-531) Polypyrimidine tract-binding	1e-05
d2adca2	88	d.58.7.1 (A:444-531) Polypyrimidine tract-binding	4e-05
d3begb1	87	d.58.7.1 (B:121-207) Splicing factor, arginine/ser	1e-05
d3begb1	87	d.58.7.1 (B:121-207) Splicing factor, arginine/ser	1e-05
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	2e-05
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	9e-05
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	8e-04
d1u1qa_	183	d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1	0.001
d1wexa_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	4e-05
d1wexa_	104	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	8e-05
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 5e-05
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 5e-05
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 1e-04
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	d.58.7.3 (A:) 1e-04
d1zh5a2	85	d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo	2e-04
d1zh5a2	85	d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo	5e-04
d2b0ga1	83	d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosoph	2e-04
d2b0ga1	83	d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosoph	4e-04
d2ghpa2	75	d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin	3e-04
d2ghpa2	75	d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin	3e-04
d1wi6a1	75	d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding	5e-04
d1wi6a1	75	d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding	5e-04

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (216), Expect = 2e-21
 Identities = 49/96 (51%), Positives = 72/96 (75%)

Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF 404
           R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + 
Sbjct: 4   RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVS 63

Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
           F++PE AD C + L+GRWFG RQITA+ WDG T Y+
Sbjct: 64  FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 99

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (216), Expect = 2e-21
 Identities = 49/96 (51%), Positives = 72/96 (75%)

Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF 689
           R ++E V+I+KN+F P  F+ D  ++ E ++DLR ECSK G ++K++L D+HP+GVA + 
Sbjct: 4   RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVS 63

Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
           F++PE AD C + L+GRWFG RQITA+ WDG T Y+
Sbjct: 64  FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 99

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 7e-15
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +N+ +YV  L   +T ++  +  ++CG+V  +  T Q  I +Y D  T   KGDA  +Y 
Sbjct: 7   DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 66

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
              +   A+   DG + +G K+KV  A+
Sbjct: 67  DPPTAKAAVEWFDGKDFQGSKLKVSLAR 94

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 27/92 (29%), Positives = 47/92 (51%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           D   +++ +YV  L   +T ++  +  ++CG+V  +  T Q  I +Y D  T   KGDA 
Sbjct: 3   DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62

Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            +Y    +   A+   DG + +G K+KV  A+
Sbjct: 63  VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 94

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G    ++YV NLP D+  ++  +V  K G            I+       +     A   
Sbjct: 11  GNNDCRIYVGNLPPDIRTKDIEDVFYKYG-----------AIRDIDLKNRRGGPPFAFVE 59

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           +      + A+   DGY+  G +++VE  +
Sbjct: 60  FEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 89

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 4e-13
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
            + ++YV NLP D+  ++  +V  K G            I+       +     A   + 
Sbjct: 13  NDCRIYVGNLPPDIRTKDIEDVFYKYG-----------AIRDIDLKNRRGGPPFAFVEFE 61

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
                + A+   DGY+  G +++VE  +
Sbjct: 62  DPRDAEDAVYGRDGYDYDGYRLRVEFPR 89

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 341 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEG 399
           +RG    N+  I V NL        D+       +D+ +   K G ++ +   + +    
Sbjct: 6   IRGPAGNNDCRIYVGNL------PPDIR-----TKDIEDVFYKYGAIRDIDLKNRRGGPP 54

Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
            A + F++P  A+      +G  +   ++  E
Sbjct: 55  FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 86

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 626 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEG 684
           +RG    N+  I V NL        D+       +D+ +   K G ++ +   + +    
Sbjct: 6   IRGPAGNNDCRIYVGNL------PPDIR-----TKDIEDVFYKYGAIRDIDLKNRRGGPP 54

Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
            A + F++P  A+      +G  +   ++  E
Sbjct: 55  FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 86

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL------HDKHPEGVAQIF 404
           V+ + N+  P     D     E  +D+R+ECSK G VK + +       +    G   + 
Sbjct: 6   VLCLMNMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 64

Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWD 434
           F          + L GR F  R +  +  D
Sbjct: 65  FTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL------HDKHPEGVAQIF 689
           V+ + N+  P     D     E  +D+R+ECSK G VK + +       +    G   + 
Sbjct: 6   VLCLMNMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 64

Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWD 719
           F          + L GR F  R +  +  D
Sbjct: 65  FTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 60.8 bits (147), Expect = 2e-12
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           NT + V+ LP D+T  E   + +  G +         K                   +  
Sbjct: 2   NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAF--------VDFTS 53

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
           +     A+ +L+G  +R K++KV  A+
Sbjct: 54  EMDSQRAIKVLNGITVRNKRLKVSYAR 80

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 59.6 bits (144), Expect = 7e-12
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           +T + V+ LP D+T  E   + +  G +         K                   +  
Sbjct: 2   NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAF--------VDFTS 53

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
           +     A+ +L+G  +R K++KV  A+
Sbjct: 54  EMDSQRAIKVLNGITVRNKRLKVSYAR 80

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 15/84 (17%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 407
           +IV  L       +D+T      ++L       G +    +   +  G     A + F  
Sbjct: 5   LIVNYL------PQDMT-----DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS 53

Query: 408 PEAADACRELLNGRWFGQRQITAE 431
              +    ++LNG     +++   
Sbjct: 54  EMDSQRAIKVLNGITVRNKRLKVS 77

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 15/84 (17%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 692
           +IV  L       +D+T      ++L       G +    +   +  G     A + F  
Sbjct: 5   LIVNYL------PQDMT-----DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS 53

Query: 693 PEAADACRELLNGRWFGQRQITAE 716
              +    ++LNG     +++   
Sbjct: 54  EMDSQRAIKVLNGITVRNKRLKVS 77

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 8e-12
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           + K+++  LP  L  ++  E++                  L  D  T   KG A C Y+ 
Sbjct: 1   AHKLFIGGLPNYLNDDQVKELLTSF--------GPLKAFNLVKDSATGLSKGYAFCEYVD 52

Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKG 306
               D A++ L+G ++  KK+ V+RA    K 
Sbjct: 53  INVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 84

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K+++  LP  L  ++  E++                  L  D  T   KG A C Y+   
Sbjct: 3   KLFIGGLPNYLNDDQVKELLTSF--------GPLKAFNLVKDSATGLSKGYAFCEYVDIN 54

Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKG 591
             D A++ L+G ++  KK+ V+RA    K 
Sbjct: 55  VTDQAIAGLNGMQLGDKKLLVQRASVGAKN 84

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 1e-11
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E +  +Y+ NLP  +T EE  ++  K G            I+      T + +G A   Y
Sbjct: 5   EVNRILYIRNLPYKITAEEMYDIFGKYG-----------PIRQIRVGNTPETRGTAYVVY 53

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 330
                   A   L G+ +  + + V         +  D      KK+++ L+ LK+  
Sbjct: 54  EDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMD-----TKKKEEQLKLLKEKY 106

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 16/118 (13%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           + N  +Y+ NLP  +T EE  ++  K G            I+      T + +G A   Y
Sbjct: 5   EVNRILYIRNLPYKITAEEMYDIFGKYG-----------PIRQIRVGNTPETRGTAYVVY 53

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 615
                   A   L G+ +  + + V         +  D      KK+++ L+ LK+  
Sbjct: 54  EDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMD-----TKKKEEQLKLLKEKY 106

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 14/105 (13%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEGVAQIFFKEPE 409
           ++ ++NL         +T      +++ +   K G ++++   +     G A + +++  
Sbjct: 9   ILYIRNL------PYKIT-----AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 57

Query: 410 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK 454
            A    + L+G     R +    ++    ++ +   +++E +LK 
Sbjct: 58  DAKNACDHLSGFNVCNRYLVVLYYNANRAFQ-KMDTKKKEEQLKL 101

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 14/105 (13%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEGVAQIFFKEPE 694
           ++ ++NL         +T      +++ +   K G ++++   +     G A + +++  
Sbjct: 9   ILYIRNL------PYKIT-----AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 57

Query: 695 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK 739
            A    + L+G     R +    ++    ++ +   +++E +LK 
Sbjct: 58  DAKNACDHLSGFNVCNRYLVVLYYNANRAFQ-KMDTKKKEEQLKL 101

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
            T + V+ LP ++TQEEF  +    G +                  T    G     YI 
Sbjct: 2   KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--------TGQSLGYGFVNYID 53

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
            +  + A++ L+G  ++ K IKV  A+
Sbjct: 54  PKDAEKAINTLNGLRLQTKTIKVSYAR 80

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T + V+ LP ++TQEEF  +    G +                  T    G     YI  
Sbjct: 3   TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--------TGQSLGYGFVNYIDP 54

Query: 276 ESVDLALSILDGYEIRGKKIKVERAK 301
           +  + A++ L+G  ++ K IKV  A+
Sbjct: 55  KDAEKAINTLNGLRLQTKTIKVSYAR 80

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 407
           +IV  L       +++T     Q++ R      G ++   L      G       + + +
Sbjct: 5   LIVNYL------PQNMT-----QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53

Query: 408 PEAADACRELLNGRWFGQRQITAE 431
           P+ A+     LNG     + I   
Sbjct: 54  PKDAEKAINTLNGLRLQTKTIKVS 77

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 692
           +IV  L       +++T     Q++ R      G ++   L      G       + + +
Sbjct: 5   LIVNYL------PQNMT-----QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53

Query: 693 PEAADACRELLNGRWFGQRQITAE 716
           P+ A+     LNG     + I   
Sbjct: 54  PKDAEKAINTLNGLRLQTKTIKVS 77

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (138), Expect = 6e-11
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
            T + V N+P  ++ +E ++                               G+A+  +  
Sbjct: 9   PTIIKVQNMPFTVSIDEILDFFYGY--------QVIPGSVCLKYNEKGMPTGEAMVAFES 60

Query: 275 KESVDLALSILDGYEIRGKKIKVERA 300
           ++    A+  L+   I  +K+K+   
Sbjct: 61  RDEATAAVIDLNDRPIGSRKVKLVLG 86

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (137), Expect = 7e-11
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
            T + V N+P  ++ +E ++                               G+A+  +  
Sbjct: 9   PTIIKVQNMPFTVSIDEILDFFYGY--------QVIPGSVCLKYNEKGMPTGEAMVAFES 60

Query: 560 KESVDLALSILDGYEIRGKKIKVERA 585
           ++    A+  L+   I  +K+K+   
Sbjct: 61  RDEATAAVIDLNDRPIGSRKVKLVLG 86

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFF 405
           ++I V+N+         V+       ++ +       +   V         P G A + F
Sbjct: 10  TIIKVQNM------PFTVS-----IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAF 58

Query: 406 KEPEAADACRELLNGRWFGQRQI 428
           +  + A A    LN R  G R++
Sbjct: 59  ESRDEATAAVIDLNDRPIGSRKV 81

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFF 690
           ++I V+N+         V+       ++ +       +   V         P G A + F
Sbjct: 10  TIIKVQNM------PFTVS-----IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAF 58

Query: 691 KEPEAADACRELLNGRWFGQRQI 713
           +  + A A    LN R  G R++
Sbjct: 59  ESRDEATAAVIDLNDRPIGSRKV 81

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 9e-11
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           ++A +N  + V+NL  D  + +  E+ +           +  +I L  D  T   KG A 
Sbjct: 3   RRADDNATIRVTNLSEDTRETDLQELFRPF--------GSISRIYLAKDKTTGQSKGFAF 54

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            ++ ++E    A++ + G+      + VE AK
Sbjct: 55  ISFHRREDAARAIAGVSGFGYDHLILNVEWAK 86

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           +++  + V+NL  D  + +  E+ +           +  +I L  D  T   KG A  ++
Sbjct: 6   DDNATIRVTNLSEDTRETDLQELFRPF--------GSISRIYLAKDKTTGQSKGFAFISF 57

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            ++E    A++ + G+      + VE AK
Sbjct: 58  HRREDAARAIAGVSGFGYDHLILNVEWAK 86

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
              S +++V NL    ++E+  ++    G           ++    D  TK  KG A  T
Sbjct: 5   SSGSGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVT 56

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           ++  E    A + +DG   +G+ + V  + 
Sbjct: 57  FMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           +  + +++V NL    ++E+  ++    G           ++    D  TK  KG A  T
Sbjct: 5   SSGSGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVT 56

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           ++  E    A + +DG   +G+ + V  + 
Sbjct: 57  FMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           N ++++  +P    +EE +E + K    + DV      I   +       +G A   Y  
Sbjct: 1   NCRLFIGGIPKMKKREEILEEIAKVTEGVLDV------IVYASAADKMKNRGFAFVEYES 54

Query: 560 KESVDLALSILDG--YEIRGKKIKVERAK 586
             +  +A   L     ++ G +I V+ A+
Sbjct: 55  HRAAAMARRKLMPGRIQLWGHQIAVDWAE 83

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
            ++++  +P    +EE +E + K    + DV      I   +       +G A   Y   
Sbjct: 2   CRLFIGGIPKMKKREEILEEIAKVTEGVLDV------IVYASAADKMKNRGFAFVEYESH 55

Query: 276 ESVDLALSILDG--YEIRGKKIKVERAK 301
            +  +A   L     ++ G +I V+ A+
Sbjct: 56  RAAAMARRKLMPGRIQLWGHQIAVDWAE 83

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           ++YV N+P  +T+E  ++       +       Q              K  A   +   +
Sbjct: 3   RLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 59

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
               A+   DG   +G+ +K+ R  
Sbjct: 60  ETTQAM-AFDGIIFQGQSLKIRRPH 83

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           ++YV N+P  +T+E  ++       +       Q              K  A   +   +
Sbjct: 3   RLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 59

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
               A+   DG   +G+ +K+ R  
Sbjct: 60  ETTQAM-AFDGIIFQGQSLKIRRPH 83

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           ++  VYV  L   +++    E+  + G          +   +  D  T   +G     ++
Sbjct: 8   QDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEFL 59

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            +E  D A+ I+D  ++ GK I+V +A 
Sbjct: 60  SEEDADYAIKIMDMIKLYGKPIRVNKAS 87

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +   VYV  L   +++    E+  + G          +   +  D  T   +G     +
Sbjct: 7   NQDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEF 58

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
           + +E  D A+ I+D  ++ GK I+V +A 
Sbjct: 59  LSEEDADYAIKIMDMIKLYGKPIRVNKAS 87

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           KK +    +   NL  ++T++E  EV +    +       + K             G A 
Sbjct: 11  KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK-------------GIAY 57

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +  +   +  L    G EI G+ + +    
Sbjct: 58  IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 54.3 bits (130), Expect = 7e-10
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
             +  +   NL  ++T++E  EV +    +       + K             G A   +
Sbjct: 14  RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK-------------GIAYIEF 60

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             +   +  L    G EI G+ + +    
Sbjct: 61  KSEADAEKNLEEKQGAEIDGRSVSLYYTG 89

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 339 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
           D    ++ +    ++ KNL        ++T     + +L+E       ++ V   D   +
Sbjct: 6   DPCTSKKVRAARTLLAKNL------SFNIT-----EDELKEVFEDALEIRLVS-QDGKSK 53

Query: 399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
           G+A I FK    A+   E   G     R ++  
Sbjct: 54  GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 624 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 683
           D    ++ +    ++ KNL        ++T     + +L+E       ++ V   D   +
Sbjct: 6   DPCTSKKVRAARTLLAKNL------SFNIT-----EDELKEVFEDALEIRLVS-QDGKSK 53

Query: 684 GVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
           G+A I FK    A+   E   G     R ++  
Sbjct: 54  GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           A +  K++V  L  D  ++   +V  K             ++ +  D  T+  +G    T
Sbjct: 2   ASDEGKLFVGGLSFDTNEQSLEQVFSKY--------GQISEVVVVKDRETQRSRGFGFVT 53

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +   +    A+  ++G  + G++I+V++A 
Sbjct: 54  FENIDDAKDAMMAMNGKSVDGRQIRVDQAG 83

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 270
           +  +  K++V  L  D  ++   +V  K             ++ +  D  T+  +G    
Sbjct: 1   MASDEGKLFVGGLSFDTNEQSLEQVFSKY--------GQISEVVVVKDRETQRSRGFGFV 52

Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           T+   +    A+  ++G  + G++I+V++A 
Sbjct: 53  TFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 83

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
            +YV +L  D+T+    E     G ++         I++  D  T+   G A   + +  
Sbjct: 2   SLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPA 53

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
             + AL  ++   I+GK +++  ++
Sbjct: 54  DAERALDTMNFDVIKGKPVRIMWSQ 78

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
            +YV +L  D+T+    E     G ++         I++  D  T+   G A   + +  
Sbjct: 2   SLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPA 53

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
             + AL  ++   I+GK +++  ++
Sbjct: 54  DAERALDTMNFDVIKGKPVRIMWSQ 78

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKE 407
           + V +L        DVT     +  L E+ S  G +  + +      +   G A + F++
Sbjct: 3   LYVGDL------HPDVT-----EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 51

Query: 408 PEAADACRELLNGRWFGQRQI 428
           P  A+   + +N      + +
Sbjct: 52  PADAERALDTMNFDVIKGKPV 72

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKE 692
           + V +L        DVT     +  L E+ S  G +  + +      +   G A + F++
Sbjct: 3   LYVGDL------HPDVT-----EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 51

Query: 693 PEAADACRELLNGRWFGQRQI 713
           P  A+   + +N      + +
Sbjct: 52  PADAERALDTMNFDVIKGKPV 72

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 219 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 278
           ++ NL    T+E    V  K G +      +    K           G     Y K E  
Sbjct: 2   FIKNLNFSTTEETLKGVFSKVGAIK-----SCTISKKKNKAGVLLSMGFGFVEYKKPEQA 56

Query: 279 DLALSILDGYEIRGKKIKVERAKFTMK 305
             AL  L G+ + G K++V  ++   K
Sbjct: 57  QKALKQLQGHTVDGHKLEVRISERATK 83

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 563
           ++ NL    T+E    V  K G +      +    K           G     Y K E  
Sbjct: 2   FIKNLNFSTTEETLKGVFSKVGAIK-----SCTISKKKNKAGVLLSMGFGFVEYKKPEQA 56

Query: 564 DLALSILDGYEIRGKKIKVERAKFTMK 590
             AL  L G+ + G K++V  ++   K
Sbjct: 57  QKALKQLQGHTVDGHKLEVRISERATK 83

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 54.6 bits (131), Expect = 5e-10
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           +T +YV+NLP  +T ++   +  K G +++                T   +G A   Y K
Sbjct: 6   DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--------TGRPRGVAFVRYNK 57

Query: 560 KESVDLALSILDGYEIRG--KKIKVERA 585
           +E    A+S L+     G  + + V  A
Sbjct: 58  REEAQEAISALNNVIPEGGSQPLSVRLA 85

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 212 GEE--STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           GE    T +YV+NLP  +T ++   +  K G +++                T   +G A 
Sbjct: 1   GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--------TGRPRGVAF 52

Query: 270 CTYIKKESVDLALSILDGYEIRG--KKIKVERA 300
             Y K+E    A+S L+     G  + + V  A
Sbjct: 53  VRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 343 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PE 398
           GE  K+ + + V NL       + +T        L     K G + +  +        P 
Sbjct: 1   GESIKD-TNLYVTNL------PRTIT-----DDQLDTIFGKYGSIVQKNILRDKLTGRPR 48

Query: 399 GVAQIFFKEPEAADACRELLNGRWF--GQRQIT 429
           GVA + + + E A      LN      G + ++
Sbjct: 49  GVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 81

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PE 683
           GE  K+ + + V NL       + +T        L     K G + +  +        P 
Sbjct: 1   GESIKD-TNLYVTNL------PRTIT-----DDQLDTIFGKYGSIVQKNILRDKLTGRPR 48

Query: 684 GVAQIFFKEPEAADACRELLNGRWF--GQRQIT 714
           GVA + + + E A      LN      G + ++
Sbjct: 49  GVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 81

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +++ E   ++V+++  +  ++E  E     G            I L  D  T   KG AL
Sbjct: 2   QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYAL 53

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             Y   +    A   L+G EI G+ I+V+   
Sbjct: 54  VEYETHKQALAAKEALNGAEIMGQTIQVDWCF 85

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           E   ++V+++  +  ++E  E     G            I L  D  T   KG AL  Y 
Sbjct: 6   EGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYE 57

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
             +    A   L+G EI G+ I+V+   
Sbjct: 58  THKQALAAKEALNGAEIMGQTIQVDWCF 85

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 15/92 (16%)

Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEG 399
           +RS    ++ V ++       ++       + +++E+    G +K + L+        +G
Sbjct: 2   QRSVEGWILFVTSI------HEEAQ-----EDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 50

Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
            A + ++  + A A +E LNG     + I  +
Sbjct: 51  YALVEYETHKQALAAKEALNGAEIMGQTIQVD 82

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 15/92 (16%)

Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEG 684
           +RS    ++ V ++       ++       + +++E+    G +K + L+        +G
Sbjct: 2   QRSVEGWILFVTSI------HEEAQ-----EDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 50

Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
            A + ++  + A A +E LNG     + I  +
Sbjct: 51  YALVEYETHKQALAAKEALNGAEIMGQTIQVD 82

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 6e-10
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K+++  L    TQE   E   + G           +  +  DP TK  +G    T++ + 
Sbjct: 2   KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQA 53

Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
            VD  L+    +E+  K I  + A
Sbjct: 54  GVDKVLA-QSRHELDSKTIDPKVA 76

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 6e-10
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K+++  L    TQE   E   + G           +  +  DP TK  +G    T++ + 
Sbjct: 2   KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQA 53

Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
            VD  L+    +E+  K I  + A
Sbjct: 54  GVDKVLA-QSRHELDSKTIDPKVA 76

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 55.7 bits (133), Expect = 6e-10
 Identities = 15/117 (12%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 185 PMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 244
           P       +++   Q++   P +     +    + V+ +P  + + +  ++ ++ G +  
Sbjct: 12  PYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIES 71

Query: 245 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                  + +                 +    S   A++ L+G+ I  K++KV  A 
Sbjct: 72  VKIVCDRETRQSRGYGF--------VKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 49.9 bits (118), Expect = 6e-08
 Identities = 12/105 (11%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
           + +++     +   +      + V+ +P  + + +  ++ ++ G +         + +  
Sbjct: 24  QQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQS 83

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                          +    S   A++ L+G+ I  K++KV  A 
Sbjct: 84  RGYGF--------VKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 8e-10
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           S+ + V NLP D   +E  ++++   L    VD N+                 A  T + 
Sbjct: 5   SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNK---------------RTAFVTLLN 49

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            E    A+ +   Y  RGK + V+   
Sbjct: 50  GEQAQNAIQMFHQYSFRGKDLIVQLQP 76

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           ++ + V NLP D   +E  ++++   L    VD N+                 A  T + 
Sbjct: 5   SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNK---------------RTAFVTLLN 49

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
            E    A+ +   Y  RGK + V+   
Sbjct: 50  GEQAQNAIQMFHQYSFRGKDLIVQLQP 76

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 194 KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
           + VP +++K E        E+  K+++  L  + T+E      ++ G             
Sbjct: 6   ETVPLERKKREK-------EQFRKLFIGGLSFETTEESLRNYYEQWG--------KLTDC 50

Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            +  DP +K  +G    T+     VD A++    + I G+ ++ +RA 
Sbjct: 51  VVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAV 97

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 6e-09
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
            P +++K++ E+ +K      +++  L  + T+E      ++ G              + 
Sbjct: 8   VPLERKKREKEQFRK------LFIGGLSFETTEESLRNYYEQWG--------KLTDCVVM 53

Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            DP +K  +G    T+     VD A++    + I G+ ++ +RA 
Sbjct: 54  RDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAV 97

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
           A     +YV  L  ++  +         G +               D  T+  +G A   
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI--------PLDYETEKHRGFAFVE 53

Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
           +   E    A+  ++  E+ G+ I+V  AK
Sbjct: 54  FELAEDAAAAIDNMNESELFGRTIRVNLAK 83

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
              +YV  L  ++  +         G +               D  T+  +G A   +  
Sbjct: 5   KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI--------PLDYETEKHRGFAFVEFEL 56

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            E    A+  ++  E+ G+ I+V  AK
Sbjct: 57  AEDAAAAIDNMNESELFGRTIRVNLAK 83

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K   + ++++V NLP D+T+EE  ++ +K G   +                         
Sbjct: 3   KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF--------------GF 48

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                +   ++A   LD   +RGK+++V  A 
Sbjct: 49  IRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 18/94 (19%)

Query: 212 GEES----TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 267
           GE++    ++++V NLP D+T+EE  ++ +K G   +                       
Sbjct: 1   GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF-------------- 46

Query: 268 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                  +   ++A   LD   +RGK+++V  A 
Sbjct: 47  GFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 343 GERS-KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 401
           GE++    S + V NL        D+T     ++++R+   K G   +V       +G  
Sbjct: 1   GEKTFTQRSRLFVGNL------PPDIT-----EEEMRKLFEKYGKAGEV--FIHKDKGFG 47

Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
            I  +    A+  +  L+      +Q+   
Sbjct: 48  FIRLETRTLAEIAKVELDNMPLRGKQLRVR 77

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 628 GERS-KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 686
           GE++    S + V NL        D+T     ++++R+   K G   +V       +G  
Sbjct: 1   GEKTFTQRSRLFVGNL------PPDIT-----EEEMRKLFEKYGKAGEV--FIHKDKGFG 47

Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
            I  +    A+  +  L+      +Q+   
Sbjct: 48  FIRLETRTLAEIAKVELDNMPLRGKQLRVR 77

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 198 GQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
           G +  P+P         +  + V  L L  T+ +  EV  K G            + +  
Sbjct: 1   GNRANPDP---------NCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVY 43

Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297
           D  ++  +G A   +   +    A    +G E+ G++I+V
Sbjct: 44  DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 9e-09
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           N  + V  L L  T+ +  EV  K G            + +  D  ++  +G A   +  
Sbjct: 9   NCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFEN 60

Query: 560 KESVDLALSILDGYEIRGKKIKV 582
            +    A    +G E+ G++I+V
Sbjct: 61  VDDAKEAKERANGMELDGRRIRV 83

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 343 GERSKNE--SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---- 396
           G R+  +    + V  L          T     ++DLRE  SK G +  V +        
Sbjct: 1   GNRANPDPNCCLGVFGL------SLYTT-----ERDLREVFSKYGPIADVSIVYDQQSRR 49

Query: 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
             G A ++F+  + A   +E  NG     R+I 
Sbjct: 50  SRGFAFVYFENVDDAKEAKERANGMELDGRRIR 82

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 628 GERSKNE--SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---- 681
           G R+  +    + V  L          T     ++DLRE  SK G +  V +        
Sbjct: 1   GNRANPDPNCCLGVFGL------SLYTT-----ERDLREVFSKYGPIADVSIVYDQQSRR 49

Query: 682 PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
             G A ++F+  + A   +E  NG     R+I 
Sbjct: 50  SRGFAFVYFENVDDAKEAKERANGMELDGRRIR 82

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 17/93 (18%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDA 268
           D    +++V++ NL   + ++  V  +  K G ++                     KG A
Sbjct: 10  DPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVG----------------CSVHKGFA 53

Query: 269 LCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
              Y+ + +   A++  DG  I G+ + +  A 
Sbjct: 54  FVQYVNERNARAAVAGEDGRMIAGQVLDINLAA 86

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
               N++V++ NL   + ++  V  +  K G ++                     KG A 
Sbjct: 11  PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVG----------------CSVHKGFAF 54

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             Y+ + +   A++  DG  I G+ + +  A 
Sbjct: 55  VQYVNERNARAAVAGEDGRMIAGQVLDINLAA 86

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 14/90 (15%)

Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 401
           + +     S + + NL      +  V      + D+    SK G +          +G A
Sbjct: 8   KTDPRSMNSRVFIGNL------NTLVV----KKSDVEAIFSKYGKIVGC----SVHKGFA 53

Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
            + +     A A     +GR    + +   
Sbjct: 54  FVQYVNERNARAAVAGEDGRMIAGQVLDIN 83

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 14/90 (15%)

Query: 627 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 686
           + +     S + + NL      +  V      + D+    SK G +          +G A
Sbjct: 8   KTDPRSMNSRVFIGNL------NTLVV----KKSDVEAIFSKYGKIVGC----SVHKGFA 53

Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
            + +     A A     +GR    + +   
Sbjct: 54  FVQYVNERNARAAVAGEDGRMIAGQVLDIN 83

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K  +++  +YV NL    T+E+  E+  K G        +  KI +  D   K   G   
Sbjct: 2   KLLKKSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCF 53

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             Y  +   + A+  ++G  +  + I+ +   
Sbjct: 54  VEYYSRADAENAMRYINGTRLDDRIIRTDWDA 85

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           ++S  +YV NL    T+E+  E+  K G        +  KI +  D   K   G     Y
Sbjct: 5   KKSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCFVEY 56

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             +   + A+  ++G  +  + I+ +   
Sbjct: 57  YSRADAENAMRYINGTRLDDRIIRTDWDA 85

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 493 KLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKG 551
           ++ K Q  +K+ V N+P    Q E  E+    G            ++L      T   +G
Sbjct: 1   QVPKKQTTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRG 52

Query: 552 DALCTYIKKESVDLALSIL-DGYEIRGKKIKVERAK 586
                +I K+    A + L     + G+++ +E A 
Sbjct: 53  FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 88

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (123), Expect = 8e-09
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCT 271
           + ++K+ V N+P    Q E  E+    G            ++L      T   +G     
Sbjct: 6   QTTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRGFGFVD 57

Query: 272 YIKKESVDLALSIL-DGYEIRGKKIKVERAK 301
           +I K+    A + L     + G+++ +E A 
Sbjct: 58  FITKQDAKKAFNALCHSTHLYGRRLVLEWAD 88

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-----HDKHPEG 399
           + +  S I+V+N+                Q+++RE  S  G +K V L           G
Sbjct: 4   KKQTTSKILVRNI------PFQAN-----QREIRELFSTFGELKTVRLPKKMTGTGAHRG 52

Query: 400 VAQIFFKEPEAAD-ACRELLNGRWFGQRQITAETWDGKTRYK 440
              + F   + A  A   L +      R++  E  D +   +
Sbjct: 53  FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)

Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-----HDKHPEG 684
           + +  S I+V+N+                Q+++RE  S  G +K V L           G
Sbjct: 4   KKQTTSKILVRNI------PFQAN-----QREIRELFSTFGELKTVRLPKKMTGTGAHRG 52

Query: 685 VAQIFFKEPEAAD-ACRELLNGRWFGQRQITAETWDGKTRYK 725
              + F   + A  A   L +      R++  E  D +   +
Sbjct: 53  FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (123), Expect = 5e-09
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K+ VSNL   ++  +  E+  + G          +K        +    G A   + +K 
Sbjct: 2   KLLVSNLDFGVSDADIQELFAEFG---------TLKKAAVHYDRSGRSLGTADVHFERKA 52

Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
               A+   +G  + G+ + ++  
Sbjct: 53  DALKAMKQYNGVPLDGRPMNIQLV 76

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (123), Expect = 5e-09
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K+ VSNL   ++  +  E+  + G          +K        +    G A   + +K 
Sbjct: 2   KLLVSNLDFGVSDADIQELFAEFG---------TLKKAAVHYDRSGRSLGTADVHFERKA 52

Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
               A+   +G  + G+ + ++  
Sbjct: 53  DALKAMKQYNGVPLDGRPMNIQLV 76

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEP 408
           ++V NL      D  V+       D++E  ++ G +KK  +         G A + F+  
Sbjct: 3   LLVSNL------DFGVS-----DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 51

Query: 409 EAADACRELLNGRWFGQRQITAE 431
             A    +  NG     R +  +
Sbjct: 52  ADALKAMKQYNGVPLDGRPMNIQ 74

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEP 693
           ++V NL      D  V+       D++E  ++ G +KK  +         G A + F+  
Sbjct: 3   LLVSNL------DFGVS-----DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 51

Query: 694 EAADACRELLNGRWFGQRQITAE 716
             A    +  NG     R +  +
Sbjct: 52  ADALKAMKQYNGVPLDGRPMNIQ 74

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +++ NL  ++ ++   +     G+++          K+  DP T + KG A   +   ++
Sbjct: 1   IFIGNLDPEIDEKLLYDTFSAFGVIL-------QTPKIMRDPDTGNSKGYAFINFASFDA 53

Query: 278 VDLALSILDGYEIRGKKIKVERAK 301
            D A+  ++G  +  + I V  A 
Sbjct: 54  SDAAIEAMNGQYLCNRPITVSYAF 77

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +++ NL  ++ ++   +     G+++          K+  DP T + KG A   +   ++
Sbjct: 1   IFIGNLDPEIDEKLLYDTFSAFGVIL-------QTPKIMRDPDTGNSKGYAFINFASFDA 53

Query: 563 VDLALSILDGYEIRGKKIKVERAK 586
            D A+  ++G  +  + I V  A 
Sbjct: 54  SDAAIEAMNGQYLCNRPITVSYAF 77

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 6e-09
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
               +++VSN+P      +  ++  + G ++                  +  KG    T+
Sbjct: 9   STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV----------EIIFNERGSKGFGFVTF 58

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
                 D A   L G  + G+KI+V  A 
Sbjct: 59  ENSADADRAREKLHGTVVEGRKIEVNNAT 87

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
              +++VSN+P      +  ++  + G ++                  +  KG    T+ 
Sbjct: 10  TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV----------EIIFNERGSKGFGFVTFE 59

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
                D A   L G  + G+KI+V  A 
Sbjct: 60  NSADADRAREKLHGTVVEGRKIEVNNAT 87

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 7e-09
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G E   +++ +LP +   ++ +++    G V+        +  L               +
Sbjct: 15  GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF--------VS 66

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
           Y    S   A+  ++G++I  K++KV+  +
Sbjct: 67  YDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 96

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K+  E   +++ +LP +   ++ +++    G V+        +  L              
Sbjct: 13  KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF-------- 64

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +Y    S   A+  ++G++I  K++KV+  +
Sbjct: 65  VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 96

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 7e-09
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
              +++ NL   +  +   +     G        N +  K+  D       G     +  
Sbjct: 8   VGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDENGSKGYGF--VHFET 57

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
           +E+ + A+  ++G  +  +K+ V R K
Sbjct: 58  QEAAERAIEKMNGMLLNDRKVFVGRFK 84

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 8e-09
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
              +++ NL   +  +   +     G        N +  K+  D       G     +  
Sbjct: 8   VGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDENGSKGYGF--VHFET 57

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
           +E+ + A+  ++G  +  +K+ V R K
Sbjct: 58  QEAAERAIEKMNGMLLNDRKVFVGRFK 84

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQ 402
           R      I +KNL      DK +       + L +  S  G++   KVV  +   +G   
Sbjct: 4   RKSGVGNIFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCDENGSKGYGF 52

Query: 403 IFFKEPEAADACRELLNGRWFGQRQITAE 431
           + F+  EAA+   E +NG     R++   
Sbjct: 53  VHFETQEAAERAIEKMNGMLLNDRKVFVG 81

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQ 687
           R      I +KNL      DK +       + L +  S  G++   KVV  +   +G   
Sbjct: 4   RKSGVGNIFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCDENGSKGYGF 52

Query: 688 IFFKEPEAADACRELLNGRWFGQRQITAE 716
           + F+  EAA+   E +NG     R++   
Sbjct: 53  VHFETQEAAERAIEKMNGMLLNDRKVFVG 81

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 7e-09
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 207 KWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 266
             ++ GE +  +Y+ NL   +T+ + V +  +                +     T   +G
Sbjct: 10  SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRG 61

Query: 267 DALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
            A  T+  KE    AL +++GY++ GK + +E  K
Sbjct: 62  QAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 96

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           N  +Y+ NL   +T+ + V +  +                +     T   +G A  T+  
Sbjct: 18  NKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRGQAFITFPN 69

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
           KE    AL +++GY++ GK + +E  K
Sbjct: 70  KEIAWQALHLVNGYKLYGKILVIEFGK 96

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           Q+N  V+V  L   L   E ++  +  G   K           Y           A  TY
Sbjct: 7   QKNL-VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQ--GPSASAYVTY 63

Query: 558 IKKESVDLALSILDGYEIRGKKIKV 582
           I+ E    A+  ++   + G+ +K 
Sbjct: 64  IRSEDALRAIQCVNNVVVDGRTLKA 88

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           +   V+V  L   L   E ++  +  G   K           Y           A  TYI
Sbjct: 7   QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQ--GPSASAYVTYI 64

Query: 274 KKESVDLALSILDGYEIRGKKIKV 297
           + E    A+  ++   + G+ +K 
Sbjct: 65  RSEDALRAIQCVNNVVVDGRTLKA 88

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                V+V N+P + T+E+  ++  +            +  +L  D  T   KG   C Y
Sbjct: 6   RSLRSVFVGNIPYEATEEQLKDIFSEV--------GPVVSFRLVYDRETGKPKGYGFCEY 57

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             +E+   A+  L+G E  G+ ++V+ A 
Sbjct: 58  QDQETALSAMRNLNGREFSGRALRVDNAA 86

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           +    V+V N+P + T+E+  ++  +            +  +L  D  T   KG   C Y
Sbjct: 6   RSLRSVFVGNIPYEATEEQLKDIFSEV--------GPVVSFRLVYDRETGKPKGYGFCEY 57

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
             +E+   A+  L+G E  G+ ++V+ A 
Sbjct: 58  QDQETALSAMRNLNGREFSGRALRVDNAA 86

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
            G +    PP            ++ NLP D+T+E   E  +                   
Sbjct: 6   SGSRLPKSPPY---------TAFLGNLPYDVTEESIKEFFRGL--------NISAVRLPR 48

Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
                +  KG     +   +S+  ALS L+   +  K+I+V+ A 
Sbjct: 49  EPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLGNKRIRVDVAD 92

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 9e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
               ++ NLP D+T+E   E  +                        +  KG     +  
Sbjct: 15  PYTAFLGNLPYDVTEESIKEFFRGL--------NISAVRLPREPSNPERLKGFGYAEFED 66

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
            +S+  ALS L+   +  K+I+V+ A 
Sbjct: 67  LDSLLSALS-LNEESLGNKRIRVDVAD 92

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 14/92 (15%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           + + +N  VY   +   LT +   +     G   + ++      K Y           + 
Sbjct: 13  QSSPKNCTVYCGGIASGLTDQLMRQTFSPFG---QIMEIRVFPEKGY-----------SF 58

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +   ES   A+  ++G  I G  +K    K
Sbjct: 59  VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 90

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 8e-08
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 14/88 (15%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           ++  VY   +   LT +   +     G   + ++      K Y           +   + 
Sbjct: 17  KNCTVYCGGIASGLTDQLMRQTFSPFG---QIMEIRVFPEKGY-----------SFVRFS 62

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
             ES   A+  ++G  I G  +K    K
Sbjct: 63  THESAAHAIVSVNGTTIEGHVVKCYWGK 90

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 337 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 396
           R + +  + S     +    +         +T      Q +R+  S  G + ++ +  + 
Sbjct: 6   RFEDVVNQSSPKNCTVYCGGI------ASGLT-----DQLMRQTFSPFGQIMEIRVFPEK 54

Query: 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
               + + F   E+A      +NG       +
Sbjct: 55  G--YSFVRFSTHESAAHAIVSVNGTTIEGHVV 84

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 681
           R + +  + S     +    +         +T      Q +R+  S  G + ++ +  + 
Sbjct: 6   RFEDVVNQSSPKNCTVYCGGI------ASGLT-----DQLMRQTFSPFGQIMEIRVFPEK 54

Query: 682 PEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
               + + F   E+A      +NG       +
Sbjct: 55  G--YSFVRFSTHESAAHAIVSVNGTTIEGHVV 84

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K+Y+ NL   +T ++  ++     L                        G A   Y  + 
Sbjct: 3   KLYIGNLSPAVTADDLRQLFGDRKLP--------------LAGQVLLKSGYAFVDYPDQN 48

Query: 277 SVDLALSILDG-YEIRGKKIKVERAK 301
               A+  L G  E+ GK ++V+ + 
Sbjct: 49  WAIRAIETLSGKVELHGKIMEVDYSV 74

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K+Y+ NL   +T ++  ++     L                        G A   Y  + 
Sbjct: 3   KLYIGNLSPAVTADDLRQLFGDRKLP--------------LAGQVLLKSGYAFVDYPDQN 48

Query: 562 SVDLALSILDG-YEIRGKKIKVERAK 586
               A+  L G  E+ GK ++V+ + 
Sbjct: 49  WAIRAIETLSGKVELHGKIMEVDYSV 74

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           + N  +Y++NL   + ++E  + +         + +   +I       +   +G A   +
Sbjct: 1   RPNHTIYINNLNEKIKKDELKKSL-------HAIFSRFGQILDILVSRSLKMRGQAFVIF 53

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
            +  S   AL  + G+    K ++++ AK
Sbjct: 54  KEVSSATNALRSMQGFPFYDKPMRIQYAK 82

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           +  +Y++NL   + ++E  + +         + +   +I       +   +G A   + +
Sbjct: 3   NHTIYINNLNEKIKKDELKKSL-------HAIFSRFGQILDILVSRSLKMRGQAFVIFKE 55

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
             S   AL  + G+    K ++++ AK
Sbjct: 56  VSSATNALRSMQGFPFYDKPMRIQYAK 82

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 5e-08
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
              ++++N P   TQ    +++Q   +V   +    ++                      
Sbjct: 1   ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAY--------IDVTS 52

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
           KE     +  L+G +I G  +  + + 
Sbjct: 53  KEDARYCVEKLNGLKIEGYTLVTKVSN 79

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
             ++++N P   TQ    +++Q   +V   +    ++                      K
Sbjct: 2   CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAY--------IDVTSK 53

Query: 276 ESVDLALSILDGYEIRGKKIKVERAK 301
           E     +  L+G +I G  +  + + 
Sbjct: 54  EDARYCVEKLNGLKIEGYTLVTKVSN 79

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           +   +YV NL  D+T+   +++  + G                               + 
Sbjct: 7   QPRTLYVGNLSRDVTEVLILQLFSQIG----------PCKSCKMITEHTSNDPYCFVEFY 56

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
           +      AL+ ++G +I GK++KV  A 
Sbjct: 57  EHRDAAAALAAMNGRKILGKEVKVNWAT 84

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 7e-08
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +   +YV NL  D+T+   +++  + G                               +
Sbjct: 6   GQPRTLYVGNLSRDVTEVLILQLFSQIG----------PCKSCKMITEHTSNDPYCFVEF 55

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            +      AL+ ++G +I GK++KV  A 
Sbjct: 56  YEHRDAAAALAAMNGRKILGKEVKVNWAT 84

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 403
           E       + V NL       +DVT     +  + +  S+ G  K   +  +H       
Sbjct: 3   EDDGQPRTLYVGNL------SRDVT-----EVLILQLFSQIGPCKSCKMITEHTSNDPYC 51

Query: 404 F--FKEPEAADACRELLNGRWFGQRQI 428
           F  F E   A A    +NGR    +++
Sbjct: 52  FVEFYEHRDAAAALAAMNGRKILGKEV 78

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 688
           E       + V NL       +DVT     +  + +  S+ G  K   +  +H       
Sbjct: 3   EDDGQPRTLYVGNL------SRDVT-----EVLILQLFSQIGPCKSCKMITEHTSNDPYC 51

Query: 689 F--FKEPEAADACRELLNGRWFGQRQI 713
           F  F E   A A    +NGR    +++
Sbjct: 52  FVEFYEHRDAAAALAAMNGRKILGKEV 78

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
            ++ V NL   +T +   ++  K G V+K +   +              +  AL  Y   
Sbjct: 8   LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN------------QFQALLQYADP 55

Query: 276 ESVDLALSILDGYEI--RGKKIKVERAK 301
            S   A   LDG  I      ++++ +K
Sbjct: 56  VSAQHAKLSLDGQNIYNACCTLRIDFSK 83

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
            ++ V NL   +T +   ++  K G V+K +   +              +  AL  Y   
Sbjct: 8   LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN------------QFQALLQYADP 55

Query: 561 ESVDLALSILDGYEI--RGKKIKVERAK 586
            S   A   LDG  I      ++++ +K
Sbjct: 56  VSAQHAKLSLDGQNIYNACCTLRIDFSK 83

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
           IIV+NL         VT        L +  SK G V K++   K+ +  A + + +P +A
Sbjct: 10  IIVENL------FYPVT-----LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 58

Query: 412 DACRELLNGRWFGQRQIT 429
              +  L+G+       T
Sbjct: 59  QHAKLSLDGQNIYNACCT 76

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696
           IIV+NL         VT        L +  SK G V K++   K+ +  A + + +P +A
Sbjct: 10  IIVENL------FYPVT-----LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 58

Query: 697 DACRELLNGRWFGQRQIT 714
              +  L+G+       T
Sbjct: 59  QHAKLSLDGQNIYNACCT 76

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K++V  L  D  +E+  E     G            I+L  D  T   +G    T+ ++E
Sbjct: 1   KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEE 52

Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
            V   +     + +   K +++ A
Sbjct: 53  PVKKIME-KKYHNVGLSKCEIKVA 75

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K++V  L  D  +E+  E     G            I+L  D  T   +G    T+ ++E
Sbjct: 1   KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEE 52

Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
            V   +     + +   K +++ A
Sbjct: 53  PVKKIME-KKYHNVGLSKCEIKVA 75

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 8e-08
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           E  ++ + NL  +L  E  +          +   + +                 A   + 
Sbjct: 3   EGREIMIRNLSTELLDENLLRES------FEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 56

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
            K+S + AL  ++   +  ++I V  A 
Sbjct: 57  NKDSAERALQ-MNRSLLGNREISVSLAD 83

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
           E  ++ + NL  +L  E  +          +   + +                 A   + 
Sbjct: 3   EGREIMIRNLSTELLDENLLRES------FEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 56

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            K+S + AL  ++   +  ++I V  A 
Sbjct: 57  NKDSAERALQ-MNRSLLGNREISVSLAD 83

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K+++  L  D T+++  +   K            +   L  DP T   +G     + + E
Sbjct: 1   KMFIGGLSWDTTKKDLKDYFSKF--------GEVVDCTLKLDPITGRSRGFGFVLFKESE 52

Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
           SVD  +     +++ GK I  +RA
Sbjct: 53  SVDKVMD-QKEHKLNGKVIDPKRA 75

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K+++  L  D T+++  +   K            +   L  DP T   +G     + + E
Sbjct: 1   KMFIGGLSWDTTKKDLKDYFSKF--------GEVVDCTLKLDPITGRSRGFGFVLFKESE 52

Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
           SVD  +     +++ GK I  +RA
Sbjct: 53  SVDKVMD-QKEHKLNGKVIDPKRA 75

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +K    TK++V  LP   T     +  +           +  +  + TD  T   +G   
Sbjct: 5   QKDTTFTKIFVGGLPYHTTDASLRKYFEGF--------GDIEEAVVITDRQTGKSRGYGF 56

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKR 604
            T   + + + A    +   I G+K  V  A             KP+  +
Sbjct: 57  VTMADRAAAERACKDPNP-IIDGRKANVNLAY---------LGAKPRSLQ 96

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           TK++V  LP   T     +  +           +  +  + TD  T   +G    T   +
Sbjct: 11  TKIFVGGLPYHTTDASLRKYFEGF--------GDIEEAVVITDRQTGKSRGYGFVTMADR 62

Query: 276 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKR 319
            + + A    +   I G+K  V  A             KP+  +
Sbjct: 63  AAAERACKDPNP-IIDGRKANVNLAY---------LGAKPRSLQ 96

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 14/98 (14%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
               E   V++ NL  D  +E   EV+Q+          +   +++   P T+  KG A 
Sbjct: 3   SDVTEGKTVFIRNLSFDSEEEALGEVLQQF--------GDLKYVRVVLHPDTEHSKGCAF 54

Query: 555 CTYIKKESVDLALSIL------DGYEIRGKKIKVERAK 586
             ++ +E+    L+         G ++ G+++KV+ A 
Sbjct: 55  AQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            E   V++ NL  D  +E   EV+Q+          +   +++   P T+  KG A   +
Sbjct: 6   TEGKTVFIRNLSFDSEEEALGEVLQQF--------GDLKYVRVVLHPDTEHSKGCAFAQF 57

Query: 273 IKKESVDLALSIL------DGYEIRGKKIKVERAK 301
           + +E+    L+         G ++ G+++KV+ A 
Sbjct: 58  MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           +  +YVS LP  +TQ+E  ++  + G   + + +  +  ++        F       + K
Sbjct: 6   DANLYVSGLPKTMTQKELEQLFSQYG---RIITSRILVDQVTGVSRGVGF-----IRFDK 57

Query: 560 KESVDLALSILDGYEIRG--KKIKVERA 585
           +   + A+  L+G +  G  + I V+ A
Sbjct: 58  RIEAEEAIKGLNGQKPSGATEPITVKFA 85

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
             +YVS LP  +TQ+E  ++  + G   + + +  +  ++        F       + K+
Sbjct: 7   ANLYVSGLPKTMTQKELEQLFSQYG---RIITSRILVDQVTGVSRGVGF-----IRFDKR 58

Query: 276 ESVDLALSILDGYEIRG--KKIKVERA 300
              + A+  L+G +  G  + I V+ A
Sbjct: 59  IEAEEAIKGLNGQKPSGATEPITVKFA 85

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           D+       +++N+P  +T+ + ++ ++   +    V                   G AL
Sbjct: 3   DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH--------VLVDNNGQGLGQAL 54

Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
             +  ++    +   L   ++ G++  V    
Sbjct: 55  VQFKNEDDARKSER-LHRKKLNGREAFVHVVT 85

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 9e-07
 Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
                +++N+P  +T+ + ++ ++   +    V                   G AL  + 
Sbjct: 7   AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH--------VLVDNNGQGLGQALVQFK 58

Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
            ++    +   L   ++ G++  V    
Sbjct: 59  NEDDARKSER-LHRKKLNGREAFVHVVT 85

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 15/87 (17%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           S+ V+V     D+T++E  E   + G        + M + +        F      T+  
Sbjct: 5   SSGVFVGRCTGDMTEDELREFFSQYG--------DVMDVFIPKPFRAFAF-----VTFAD 51

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
            +         +   I+G  + +  A+
Sbjct: 52  DQIAQSL--CGEDLIIKGISVHISNAE 76

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 15/87 (17%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           ++ V+V     D+T++E  E   + G        + M + +        F      T+  
Sbjct: 5   SSGVFVGRCTGDMTEDELREFFSQYG--------DVMDVFIPKPFRAFAF-----VTFAD 51

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
            +         +   I+G  + +  A+
Sbjct: 52  DQIAQSL--CGEDLIIKGISVHISNAE 76

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K++V  L ++ T E+     ++ G              L  D  T   +G    T+  ++
Sbjct: 1   KIFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESED 52

Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
            V+     +  +EI  K ++ ++A
Sbjct: 53  IVEKVCE-IHFHEINNKMVECKKA 75

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K++V  L ++ T E+     ++ G              L  D  T   +G    T+  ++
Sbjct: 1   KIFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESED 52

Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
            V+     +  +EI  K ++ ++A
Sbjct: 53  IVEKVCE-IHFHEINNKMVECKKA 75

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 483 PKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 542
           P ++   +L    + ++   V+   L   +   +  +     G V          +++ +
Sbjct: 3   PVREPVDNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKV--------RDVRIIS 52

Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
           D  ++  KG A   + + +SV LA+  L G  + G  I V+ ++
Sbjct: 53  DRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQ 95

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 6e-07
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            ++  V+   L   +   +  +     G V          +++ +D  ++  KG A   +
Sbjct: 16  RDARTVFCMQLAARIRPRDLEDFFSAVGKV--------RDVRIISDRNSRRSKGIAYVEF 67

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            + +SV LA+  L G  + G  I V+ ++
Sbjct: 68  CEIQSVPLAIG-LTGQRLLGVPIIVQASQ 95

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E+  K+++  L  + T E      ++                +  DP TK  +G    TY
Sbjct: 4   EQLRKLFIGGLSFETTDESLRSHFEQW--------GTLTDCVVMRDPNTKRSRGFGFVTY 55

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
              E VD A++    +++ G+ ++ +RA
Sbjct: 56  ATVEEVDAAMN-ARPHKVDGRVVEPKRA 82

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 5e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K+ ++  K+++  L  + T E      ++                +  DP TK  +G   
Sbjct: 1   KEPEQLRKLFIGGLSFETTDESLRSHFEQW--------GTLTDCVVMRDPNTKRSRGFGF 52

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERA 585
            TY   E VD A++    +++ G+ ++ +RA
Sbjct: 53  VTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 82

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           N+ + VSNL  +    + +       L     D  ++KI              AL     
Sbjct: 2   NSVLLVSNLNPERVTPQSLF-----ILFGVYGDVQRVKILFNKKEN-------ALVQMAD 49

Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
                LA+S L+G+++ GK I++  +K
Sbjct: 50  GNQAQLAMSHLNGHKLHGKPIRITLSK 76

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           ++ + VSNL  +    + +       L     D  ++KI              AL     
Sbjct: 2   NSVLLVSNLNPERVTPQSLF-----ILFGVYGDVQRVKILFNKKEN-------ALVQMAD 49

Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
                LA+S L+G+++ GK I++  +K
Sbjct: 50  GNQAQLAMSHLNGHKLHGKPIRITLSK 76

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           + + +V VS LP   + ++  + M++ G V                          +  Y
Sbjct: 13  RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM---------------GMVEY 57

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
           ++KE ++ AL  LD  + R  + +    +
Sbjct: 58  LRKEDMEYALRKLDDTKFRSHEGETSYIR 86

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 15/89 (16%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
               +V VS LP   + ++  + M++ G V                          +  Y
Sbjct: 13  RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM---------------GMVEY 57

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
           ++KE ++ AL  LD  + R  + +    +
Sbjct: 58  LRKEDMEYALRKLDDTKFRSHEGETSYIR 86

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 16/93 (17%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           KA   T+++V  L  + +         + G +                         A  
Sbjct: 13  KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF--------------AYI 58

Query: 556 TYIKKESVDLALSILDGYEIRG--KKIKVERAK 586
            Y   ++   A + + G+ + G  ++++V+ AK
Sbjct: 59  QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           +T+++V  L  + +         + G +                         A   Y  
Sbjct: 17  TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF--------------AYIQYES 62

Query: 275 KESVDLALSILDGYEIRG--KKIKVERAK 301
            ++   A + + G+ + G  ++++V+ AK
Sbjct: 63  LDAAQAACAKMRGFPLGGPDRRLRVDFAK 91

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 14/92 (15%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           D       +YV NL L  ++E   +                           K  +  A 
Sbjct: 3   DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--------------AVERVKKIRDYAF 48

Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
             +  +E    A+  L+G  + G  I+V  AK
Sbjct: 49  VHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 14/89 (15%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
                +YV NL L  ++E   +                           K  +  A   +
Sbjct: 6   SSVKILYVRNLMLSTSEEMIEKEFNNIKPG--------------AVERVKKIRDYAFVHF 51

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
             +E    A+  L+G  + G  I+V  AK
Sbjct: 52  SNREDAVEAMKALNGKVLDGSPIEVTLAK 80

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           K++V  +  D  +    +  ++              I++ TD  +   +G A  T+   +
Sbjct: 4   KIFVGGIKEDTEEHHLRDYFEQY--------GKIEVIEIMTDRGSGKKRGFAFVTFDDHD 55

Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
           SVD  +     + + G   +V +A
Sbjct: 56  SVDKIVI-QKYHTVNGHNCEVRKA 78

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           K++V  +  D  +    +  ++              I++ TD  +   +G A  T+   +
Sbjct: 4   KIFVGGIKEDTEEHHLRDYFEQY--------GKIEVIEIMTDRGSGKKRGFAFVTFDDHD 55

Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
           SVD  +     + + G   +V +A
Sbjct: 56  SVDKIVI-QKYHTVNGHNCEVRKA 78

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                V +  LP   ++EE V+      +V   +             +     G+A   +
Sbjct: 13  ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT--------LPVDFQGRSTGEAFVQF 64

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
             +E  + AL       I  + I++ ++ 
Sbjct: 65  ASQEIAEKAL-KKHKERIGHRYIEIFKSS 92

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
                +  V +  LP   ++EE V+      +V   +             +     G+A 
Sbjct: 10  PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT--------LPVDFQGRSTGEAF 61

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +  +E  + AL       I  + I++ ++ 
Sbjct: 62  VQFASQEIAEKAL-KKHKERIGHRYIEIFKSS 92

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 6e-07
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           ++ Q+ T +Y+SNLPL + ++E   +++  G V+                +         
Sbjct: 13  QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF--------- 63

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
                 E  +  +   +G  I+         +
Sbjct: 64  ARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           ++ T +Y+SNLPL + ++E   +++  G V+                +            
Sbjct: 16  QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF---------ARM 66

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              E  +  +   +G  I+         +
Sbjct: 67  ESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 7e-07
 Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 11/91 (12%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           ++     V++  LP   T+ +                                  G+A  
Sbjct: 11  QSTTGHCVHMRGLPYRATENDIYNFFSPLN----------PMRVHIEIGPDGRVTGEADV 60

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +   E    A++  D   ++ + +++    
Sbjct: 61  EFATHEDAVAAMA-KDKANMQHRYVELFLNS 90

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 11/88 (12%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
               V++  LP   T+ +                                  G+A   + 
Sbjct: 14  TGHCVHMRGLPYRATENDIYNFFSPLN----------PMRVHIEIGPDGRVTGEADVEFA 63

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
             E    A++  D   ++ + +++    
Sbjct: 64  THEDAVAAMA-KDKANMQHRYVELFLNS 90

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           ++++ + V  LP   T+++  E                + +++  D  T   KG     +
Sbjct: 6   QKTSDLIVLGLPWKTTEQDLKEYFSTF--------GEVLMVQVKKDLKTGHSKGFGFVRF 57

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            + E+    +S    + I G+    +   
Sbjct: 58  TEYETQVKVMS--QRHMIDGRWCDCKLPN 84

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           +  Q+ + + V  LP   T+++  E                + +++  D  T   KG   
Sbjct: 3   RAVQKTSDLIVLGLPWKTTEQDLKEYFSTF--------GEVLMVQVKKDLKTGHSKGFGF 54

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             + + E+    +S    + I G+    +   
Sbjct: 55  VRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 84

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           +Y+  L    T ++ V++ Q             +  K   D  T   KG     +    +
Sbjct: 1   LYIRGLQPGTTDQDLVKLCQPY--------GKIVSTKAILDKTTNKCKGYGFVDFDSPSA 52

Query: 278 VDLALSILDGYEIRGKKIK 296
              A++ L    ++ +  K
Sbjct: 53  AQKAVTALKASGVQAQMAK 71

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           +Y+  L    T ++ V++ Q             +  K   D  T   KG     +    +
Sbjct: 1   LYIRGLQPGTTDQDLVKLCQPY--------GKIVSTKAILDKTTNKCKGYGFVDFDSPSA 52

Query: 563 VDLALSILDGYEIRGKKIK 581
              A++ L    ++ +  K
Sbjct: 53  AQKAVTALKASGVQAQMAK 71

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 14/115 (12%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
             +  T +   NLP      E  E   +                        +    A+ 
Sbjct: 6   SGRSKTVILAKNLPAGTLAAEIQETFSRF--------------GSLGRVLLPEGGITAIV 51

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEK 610
            +++      A   L   +     + +E A   + G A   K    ++  +  E 
Sbjct: 52  EFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAES 106

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 8e-06
 Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)

Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
           G   T +   NLP      E  E   +                        +    A+  
Sbjct: 7   GRSKTVILAKNLPAGTLAAEIQETFSRF--------------GSLGRVLLPEGGITAIVE 52

Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEK 325
           +++      A   L   +     + +E A   + G A   K    ++  +  E 
Sbjct: 53  FLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAES 106

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 16/89 (17%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
            +   +YV     D+T                             D      +  A  TY
Sbjct: 3   RKGNTLYVYGE--DMTPTLLRGAFSPF--------------GNIIDLSMDPPRNCAFVTY 46

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
            K ES D A++ L+G ++   ++KV  A+
Sbjct: 47  EKMESADQAVAELNGTQVESVQLKVNIAR 75

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
           ++   +YV     D+T                             D      +  A  TY
Sbjct: 3   RKGNTLYVYGE--DMTPTLLRGAFSPF--------------GNIIDLSMDPPRNCAFVTY 46

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
            K ES D A++ L+G ++   ++KV  A+
Sbjct: 47  EKMESADQAVAELNGTQVESVQLKVNIAR 75

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
                +++ NL  + +  E    + +                   D  T   +      +
Sbjct: 11  TTPFNLFIGNLNPNKSVAELKVAISELFAK---------NDLAVVDVRTGTNRKFGYVDF 61

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
              E ++ AL  L G ++ G +IK+E+ K
Sbjct: 62  ESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           ++     +++ NL  + +  E    + +                   D  T   +     
Sbjct: 9   ESTTPFNLFIGNLNPNKSVAELKVAISELFAK---------NDLAVVDVRTGTNRKFGYV 59

Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
            +   E ++ AL  L G ++ G +IK+E+ K
Sbjct: 60  DFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
           +I   S  +++SN+P  +++E+   +    G V+K     Q              +  AL
Sbjct: 5   NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------------DRKMAL 52

Query: 270 CTYIKKESVDLALSILDGYEI-RGKKIKVERAKFTM 304
                 E    AL  L  +++     ++V  +K T+
Sbjct: 53  IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 88

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           +  +++SN+P  +++E+   +    G V+K     Q              +  AL     
Sbjct: 10  SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------------DRKMALIQMGS 57

Query: 560 KESVDLALSILDGYEI-RGKKIKVERAKFTM 589
            E    AL  L  +++     ++V  +K T+
Sbjct: 58  VEEAVQALIDLHNHDLGENHHLRVSFSKSTI 88

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
           +V VS LP   + ++  + M++ G V                             +++KE
Sbjct: 2   RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGV---------------VEFVRKE 46

Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
            +  A+  LD  + R  + +    +
Sbjct: 47  DMTYAVRKLDNTKFRSHEGETAYIR 71

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
           +V VS LP   + ++  + M++ G V                             +++KE
Sbjct: 2   RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGV---------------VEFVRKE 46

Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
            +  A+  LD  + R  + +    +
Sbjct: 47  DMTYAVRKLDNTKFRSHEGETAYIR 71

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 13/168 (7%)

Query: 138 PKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVD----ATAPMENPKAEE 193
            +  D+ L  +   +G +     + +           V   +V+    A     +     
Sbjct: 16  FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 75

Query: 194 KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
            V P +    E  +         K++V  +  D  +    +  ++ G +          I
Sbjct: 76  VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------I 127

Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
           ++ TD  +   +G A  T+   +SVD  +     + + G   +V +A 
Sbjct: 128 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL 174

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
               K++V  +  D  +    +  ++ G +          I++ TD  +   +G A  T+
Sbjct: 95  LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTF 146

Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
              +SVD  +     + + G   +V +A 
Sbjct: 147 DDHDSVDKIVI-QKYHTVNGHNCEVRKAL 174

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 59/221 (26%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
           E+  K+++  L  + T E      ++ G +            +  DP TK  +G    TY
Sbjct: 4   EQLRKLFIGGLSFETTDESLRSHFEQWGTL--------TDCVVMRDPNTKRSRGFGFVTY 55

Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
              E VD A++                                              + K
Sbjct: 56  ATVEEVDAAMNARPHKVDGRVV-----------------------------------EPK 80

Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 392
               R D  R         I V  + +              +  LR+   + G ++ + +
Sbjct: 81  RAVSREDSQRPGAHLTVKKIFVGGIKEDT-----------EEHHLRDYFEQYGKIEVIEI 129

Query: 393 H----DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
                     G A + F + ++ D                 
Sbjct: 130 MTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCE 169

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 30/224 (13%), Positives = 58/224 (25%), Gaps = 59/224 (26%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K+ ++  K+++  L  + T E      ++ G +            +  DP TK  +G   
Sbjct: 1   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTL--------TDCVVMRDPNTKRSRGFGF 52

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKA 614
            TY   E VD A++                                              
Sbjct: 53  VTYATVEEVDAAMNARPHKVDGRVV----------------------------------- 77

Query: 615 QEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKK 674
           + K    R D  R         I V  + +              +  LR+   + G ++ 
Sbjct: 78  EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDT-----------EEHHLRDYFEQYGKIEV 126

Query: 675 VVLH----DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
           + +          G A + F + ++ D                 
Sbjct: 127 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCE 169

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
             S  V+V  L   + + + VE ++K G  +  V     K               AL  +
Sbjct: 13  SVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMPFKR-------------QALVEF 58

Query: 273 IKKESVDLALSILD--GYEIRGKKIKVERAK 301
              +S    ++        I G++     + 
Sbjct: 59  ENIDSAKECVTFAADVPVYIAGQQAFFNYST 89

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
           K   +  V+V  L   + + + VE ++K G  +  V     K               AL 
Sbjct: 11  KVSVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMPFKR-------------QALV 56

Query: 556 TYIKKESVDLALSILD--GYEIRGKKIKVERAK 586
            +   +S    ++        I G++     + 
Sbjct: 57  EFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 21/113 (18%)

Query: 186 MENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKD 245
             NP+   +   G +               + V +     +  +E F E+ +K G V ++
Sbjct: 10  YRNPQNSSQSADGLR------------SAVSDVEMQEHYDEFFEEVFTEMEEKYGEV-EE 56

Query: 246 VDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 298
           ++          D       G+    + ++E  + A+  L+     G+ I  E
Sbjct: 57  MN--------VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
              + V +     +  +E F E+ +K G V ++++          D       G+    +
Sbjct: 25  SAVSDVEMQEHYDEFFEEVFTEMEEKYGEV-EEMN--------VCDNLGDHLVGNVYVKF 75

Query: 558 IKKESVDLALSILDGYEIRGKKIKVE 583
            ++E  + A+  L+     G+ I  E
Sbjct: 76  RREEDAEKAVIDLNNRWFNGQPIHAE 101

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK---HPEGV 400
            +S +     V ++     +D+       +++   E   K G V+++ + D    H  G 
Sbjct: 17  SQSADGLRSAVSDVEMQEHYDEF------FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN 70

Query: 401 AQIFFKEPEAADACRELLNGRWFGQRQITAE 431
             + F+  E A+     LN RWF  + I AE
Sbjct: 71  VYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK---HPEGV 685
            +S +     V ++     +D+       +++   E   K G V+++ + D    H  G 
Sbjct: 17  SQSADGLRSAVSDVEMQEHYDEF------FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN 70

Query: 686 AQIFFKEPEAADACRELLNGRWFGQRQITAE 716
             + F+  E A+     LN RWF  + I AE
Sbjct: 71  VYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
           K   +N  VY+   P D T ++  E ++  G V+                  K FKG   
Sbjct: 1   KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ---------MRRTLHKAFKGSIF 51

Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
             +   ES    +    G + +   + +    
Sbjct: 52  VVFDSIESAKKFVE-TPGQKYKETDLLILFKD 82

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
           ++  VY+   P D T ++  E ++  G V+                  K FKG     + 
Sbjct: 5   KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ---------MRRTLHKAFKGSIFVVFD 55

Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
             ES    +    G + +   + +    
Sbjct: 56  SIESAKKFVE-TPGQKYKETDLLILFKD 82

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 14/88 (15%)

Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
           N  ++++NLP +  +     +  +     +           +               +  
Sbjct: 8   NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAF-------------VEFTT 54

Query: 560 KESVDLALSILDGYEI-RGKKIKVERAK 586
           +   + A   L G++I     +K+  AK
Sbjct: 55  ELQSNAAKEALQGFKITPTHAMKITFAK 82

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 14/88 (15%)

Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
           +  ++++NLP +  +     +  +     +           +               +  
Sbjct: 8   NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAF-------------VEFTT 54

Query: 275 KESVDLALSILDGYEI-RGKKIKVERAK 301
           +   + A   L G++I     +K+  AK
Sbjct: 55  ELQSNAAKEALQGFKITPTHAMKITFAK 82

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
           T V V NLP    Q +  +  + CG +        + +        K     A   + + 
Sbjct: 1   TTVLVKNLPKSYNQNKVYKYFKHCGPI------IHVDVA----DSLKKNFRFARIEFARY 50

Query: 276 ESVDLALSILDGYEIRGKKIKVERA 300
           +    A++      +   +I V   
Sbjct: 51  DGALAAITK-THKVVGQNEIIVSHL 74

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
           T V V NLP    Q +  +  + CG +        + +        K     A   + + 
Sbjct: 1   TTVLVKNLPKSYNQNKVYKYFKHCGPI------IHVDVA----DSLKKNFRFARIEFARY 50

Query: 561 ESVDLALSILDGYEIRGKKIKVERA 585
           +    A++      +   +I V   
Sbjct: 51  DGALAAITK-THKVVGQNEIIVSHL 74

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 15/84 (17%)

Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
           + +  LP D+T +E  +++    L    VD  +                 A  T +  E 
Sbjct: 1   ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKG---------------TAFVTLLNGEQ 45

Query: 278 VDLALSILDGYEIRGKKIKVERAK 301
            + A++      +R +++ V+   
Sbjct: 46  AEAAINTFHQSRLRERELSVQLQP 69

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 15/84 (17%)

Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
           + +  LP D+T +E  +++    L    VD  +                 A  T +  E 
Sbjct: 1   ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKG---------------TAFVTLLNGEQ 45

Query: 563 VDLALSILDGYEIRGKKIKVERAK 586
            + A++      +R +++ V+   
Sbjct: 46  AEAAINTFHQSRLRERELSVQLQP 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	773
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.92
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.9
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.84
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.75
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.73
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.73
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.73
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.73
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.72
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.71
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.71
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.71
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.71
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.71
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.71
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.71
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.71
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.71
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.71
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.7
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.7
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.7
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.7
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.7
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.7
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.7
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.69
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.69
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.69
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.69
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.69
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.69
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.69
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.69
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.69
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.68
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.68
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.68
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.68
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.68
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.68
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.68
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.67
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.67
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.67
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.67
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.67
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.67
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.66
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.66
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.66
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.66
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.66
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.65
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.65
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.65
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.65
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.65
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.65
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.65
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.65
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.65
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.65
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.64
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.64
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.64
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.64
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.64
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.64
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.63
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.63
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.63
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.63
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.62
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.62
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.62
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.62
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.62
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.61
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.61
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.61
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.61
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.61
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.6
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.6
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.6
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.59
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.59
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.58
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.58
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.58
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.58
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.58
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.58
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.57
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.57
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.57
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.57
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.57
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.56
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.56
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.56
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.55
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.55
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.55
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.54
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.54
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.54
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.54
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.54
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.53
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.53
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.53
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.53
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.53
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.53
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.52
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.52
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.52
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.52
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.52
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.52
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.51
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.51
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.51
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.51
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.5
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.5
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.5
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.5
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.49
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.49
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.49
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.48
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.48
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.48
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.47
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.47
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.46
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.46
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.45
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.45
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.45
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.44
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.44
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.43
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.42
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.42
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.42
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.42
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.41
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.4
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.39
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.39
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.38
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.35
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.35
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.33
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.29
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.26
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.24
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.18
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.17
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.08
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.07
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.04
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.01
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	97.73
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.25
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	96.99
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	96.92
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	96.47
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	96.34
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	94.04
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	92.66

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=212.28  Aligned_cols=170  Identities=21%  Similarity=0.308  Sum_probs=143.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        |.++++..+|.++|||||+|.+.++|..|+. +++..+.++
T Consensus         5 ~~r~lfV~nLp~~~te~~L~~~F~~~G~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~~~~   75 (183)
T d1u1qa_           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGR   75 (183)
T ss_dssp             HHHEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHcCCEEE--------EEeeecccCCCccCceecccCCHHHHHHHHH-hcCCccccc
Confidence            6689999999999999999999999999998        9999999999999999999999999999998 455556666


Q ss_pred             EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160         294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY  373 (773)
Q Consensus       294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei  373 (773)
                      .+.+....                                                          +....         
T Consensus        76 ~~~~~~~~----------------------------------------------------------~~~~~---------   88 (183)
T d1u1qa_          76 VVEPKRAV----------------------------------------------------------SREDS---------   88 (183)
T ss_dssp             ECEEEECC----------------------------------------------------------CTTGG---------
T ss_pred             chhhhhhh----------------------------------------------------------hcccc---------
Confidence            65553211                                                          00000         


Q ss_pred             HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160         374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK  453 (773)
Q Consensus       374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~  453 (773)
                                            . .                                                       
T Consensus        89 ----------------------~-~-------------------------------------------------------   90 (183)
T d1u1qa_          89 ----------------------Q-R-------------------------------------------------------   90 (183)
T ss_dssp             ----------------------G-S-------------------------------------------------------
T ss_pred             ----------------------c-c-------------------------------------------------------
Confidence                                  0 0                                                       


Q ss_pred             HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160         454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT  533 (773)
Q Consensus       454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~  533 (773)
                                                              .......++|||+|||..+|+++|+++|+.||.|.     
T Consensus        91 ----------------------------------------~~~~~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~-----  125 (183)
T d1u1qa_          91 ----------------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE-----  125 (183)
T ss_dssp             ----------------------------------------TTTTCCCSEEEEECCCTTCCHHHHHHHHGGGSCEE-----
T ss_pred             ----------------------------------------cccccccceeEEccCCCcCCHHHHhhhhccCCcee-----
Confidence                                                    00012357899999999999999999999999999     


Q ss_pred             CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160         534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK  586 (773)
Q Consensus       534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~  586 (773)
                         .+.|+.+..+|.++|||||+|.++++|.+||. +++..|.|++|+|.+|.
T Consensus       126 ---~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G~~i~V~~A~  174 (183)
T d1u1qa_         126 ---VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL  174 (183)
T ss_dssp             ---EEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEETTEEEEEEECC
T ss_pred             ---eeeeecccccCccceeEEEEECCHHHHHHHHH-hCCCeECCEEEEEEecC
Confidence               79999999999999999999999999999996 79999999999999987

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-23  Score=202.47  Aligned_cols=165  Identities=18%  Similarity=0.255  Sum_probs=138.0

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||+++|+++|+++|++||.|.        +|.++++..+|.++|+|||+|.+.++|..|+. +++..+.++.
T Consensus         6 ~r~lfV~nLp~~~te~~L~~~F~~~G~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~-~~~~~~~~~~   76 (183)
T d1u1qa_           6 LRKLFIGGLSFETTDESLRSHFEQWGTLT--------DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRV   76 (183)
T ss_dssp             HHEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHcCCEE--------EEEeeecccCCCccCceecccCCHHHHHHHHH-hcCCcccccc
Confidence            36899999999999999999999999998        79999999999999999999999999999996 6677788888


Q ss_pred             EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160         580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ  659 (773)
Q Consensus       580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~  659 (773)
                      +.+..........                                  ........++|+|.||+..  +++         
T Consensus        77 ~~~~~~~~~~~~~----------------------------------~~~~~~~~~~i~V~~lp~~--~te---------  111 (183)
T d1u1qa_          77 VEPKRAVSREDSQ----------------------------------RPGAHLTVKKIFVGGIKED--TEE---------  111 (183)
T ss_dssp             CEEEECCCTTGGG----------------------------------STTTTCCCSEEEEECCCTT--CCH---------
T ss_pred             hhhhhhhhccccc----------------------------------ccccccccceeEEccCCCc--CCH---------
Confidence            8888765211000                                  0011233579999999765  443         


Q ss_pred             HHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEec
Q psy2160         660 QDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD  719 (773)
Q Consensus       660 edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~d  719 (773)
                      ++|+++|+.||.|..+.|..    +.++|+|||.|.++++|.+|+. ++|..|+|++|+|.+..
T Consensus       112 ~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G~~i~V~~A~  174 (183)
T d1u1qa_         112 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL  174 (183)
T ss_dssp             HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEETTEEEEEEECC
T ss_pred             HHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-hCCCeECCEEEEEEecC
Confidence            89999999999999997753    5678999999999999999997 79999999999998744

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.1e-21  Score=170.09  Aligned_cols=95  Identities=51%  Similarity=1.014  Sum_probs=91.1

Q ss_pred             CCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160         631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  710 (773)
Q Consensus       631 ~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G  710 (773)
                      ...+++|+|+||+++.++.+|+.++.+|++||+++|++||.|..|.+..++++|+|||+|.++++|.+|+..|||++|+|
T Consensus         5 ~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~g   84 (99)
T d2dita1           5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG   84 (99)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred             CCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECC
Confidence            45689999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEecCccccc
Q psy2160         711 RQITAETWDGKTRYK  725 (773)
Q Consensus       711 r~l~v~~~dgk~~~~  725 (773)
                      |+|.|+||+|+++|+
T Consensus        85 r~i~v~~~~g~~~~~   99 (99)
T d2dita1          85 RQITAQAWDGTTDYQ   99 (99)
T ss_dssp             EECEEEECCSCCCSS
T ss_pred             EEEEEEEeCCcCCCC
Confidence            999999999999985

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.75  E-value=1e-18  Score=147.39  Aligned_cols=80  Identities=25%  Similarity=0.392  Sum_probs=77.1

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      +|+|||+|||+++|+++|+++|++||.|..        |+|++++.+|+++|||||+|.+.++|..||+.|||..|.|++
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~   73 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR   73 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcce--------eeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEE
Confidence            689999999999999999999999999998        999999988999999999999999999999999999999999


Q ss_pred             EEEEeecc
Q psy2160         295 IKVERAKF  302 (773)
Q Consensus       295 I~V~~A~~  302 (773)
                      |+|++|++
T Consensus        74 l~v~~a~p   81 (82)
T d1b7fa1          74 LKVSYARP   81 (82)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            99999863

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.73  E-value=3.8e-18  Score=143.86  Aligned_cols=79  Identities=27%  Similarity=0.425  Sum_probs=76.7

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      +++|||+|||+++|+++|+++|++||.|.        +|+|++++.+|.++|||||+|.++++|..||+.|||..+.|++
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~   73 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPIN--------TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR   73 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------eeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEE
Confidence            67899999999999999999999999999        7999999989999999999999999999999999999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |+|++|+
T Consensus        74 l~v~~a~   80 (82)
T d1b7fa1          74 LKVSYAR   80 (82)
T ss_dssp             CEEEECC
T ss_pred             EEEEEcC
Confidence            9999997

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.8e-18  Score=142.25  Aligned_cols=80  Identities=31%  Similarity=0.453  Sum_probs=76.6

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      .|+|||+|||.++|+++|+++|++||.|..        |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|++
T Consensus         2 ~t~l~V~nLp~~~te~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~   73 (82)
T d1fxla1           2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT   73 (82)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCccc--------ccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            478999999999999999999999999998        999999888999999999999999999999999999999999


Q ss_pred             EEEEeecc
Q psy2160         295 IKVERAKF  302 (773)
Q Consensus       295 I~V~~A~~  302 (773)
                      |+|.+|++
T Consensus        74 l~v~~AkP   81 (82)
T d1fxla1          74 IKVSYARP   81 (82)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEeeC
Confidence            99999863

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-18  Score=142.23  Aligned_cols=78  Identities=22%  Similarity=0.373  Sum_probs=75.3

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      .+|||+|||+++|+++|+++|++||.|.+        |+|++|+.||+++|||||+|.++++|..||+.|||..+.|++|
T Consensus         1 aslfV~nL~~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i   72 (80)
T d1cvja1           1 ASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV   72 (80)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEEC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCEeE--------EEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            36999999999999999999999999998        9999999999999999999999999999999999999999999


Q ss_pred             EEEeec
Q psy2160         296 KVERAK  301 (773)
Q Consensus       296 ~V~~A~  301 (773)
                      +|.+|+
T Consensus        73 ~v~~a~   78 (80)
T d1cvja1          73 RIMWSQ   78 (80)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999885

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=144.36  Aligned_cols=81  Identities=23%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|.+        |+|++++.+|.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         6 ~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr   77 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR   77 (93)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCcce--------eccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6799999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        78 ~i~V~~a~~   86 (93)
T d1h2vz_          78 IIRTDWDAG   86 (93)
T ss_dssp             ECEEEEESC
T ss_pred             EEEEEEcCC
Confidence            999999863

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.8e-18  Score=144.60  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=77.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++|+.||+++|||||+|.+.++|..||..||+..|.|+
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~   75 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR   75 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEe--------cccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5689999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|+.
T Consensus        76 ~l~v~~a~p   84 (89)
T d2cqba1          76 TIRVNLAKP   84 (89)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999999874

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.2e-17  Score=142.66  Aligned_cols=81  Identities=27%  Similarity=0.312  Sum_probs=77.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|++|+.||+++|||||+|.+.++|..|++.|||..|.|+
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~--------v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~   77 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ   77 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------ccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCE
Confidence            6789999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        78 ~l~V~~a~~   86 (88)
T d1rk8a_          78 TIQVDWCFV   86 (88)
T ss_dssp             ECEEEESEE
T ss_pred             EEEEEEecC
Confidence            999999873

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=140.79  Aligned_cols=79  Identities=24%  Similarity=0.410  Sum_probs=75.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++|+.||+++|||||+|.+.++|..||+ +++..|.|+
T Consensus         5 ~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr   75 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGR   75 (84)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhhccccc--------eeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECCE
Confidence            5589999999999999999999999999998        9999999999999999999999999999998 689999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|.
T Consensus        76 ~i~V~~A~   83 (84)
T d1l3ka1          76 VVEPKRAV   83 (84)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEeee
Confidence            99998875

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.71  E-value=9.8e-18  Score=142.31  Aligned_cols=79  Identities=28%  Similarity=0.453  Sum_probs=75.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      ++|+|||+|||.++|+++|+++|++||.|..        |+|++++.+|+++|||||+|.+.++|..||+.|||..+.| 
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~--------~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   76 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ--------KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG   76 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEee--------eeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence            6789999999999999999999999999998        9999999999999999999999999999999999999976 


Q ss_pred             -eEEEEEee
Q psy2160         293 -KKIKVERA  300 (773)
Q Consensus       293 -~~I~V~~A  300 (773)
                       ++|+|.+|
T Consensus        77 ~~~l~V~~A   85 (85)
T d1b7fa2          77 SQPLSVRLA   85 (85)
T ss_dssp             SSCCEEEEC
T ss_pred             CeEEEEEEC
Confidence             88999876

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.4e-18  Score=145.58  Aligned_cols=82  Identities=24%  Similarity=0.432  Sum_probs=78.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |+|++++.||.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   79 (93)
T d1x5ua1           8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK   79 (93)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhCCccc--------cceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5689999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        80 ~l~V~~A~~~   89 (93)
T d1x5ua1          80 PIRVNKASAH   89 (93)
T ss_dssp             BCEEEETTTT
T ss_pred             EEEEEEcCCC
Confidence            9999998743

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-17  Score=140.32  Aligned_cols=77  Identities=22%  Similarity=0.375  Sum_probs=75.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||+++|+++|+++|++||.|.        +|+|++|+.+|+++|||||+|.++++|..|++.|||..+.|++|+
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~   73 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPIL--------SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR   73 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEe--------EEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            699999999999999999999999998        899999999999999999999999999999999999999999999


Q ss_pred             EEEcc
Q psy2160         582 VERAK  586 (773)
Q Consensus       582 V~~a~  586 (773)
                      |.+|+
T Consensus        74 v~~a~   78 (80)
T d1cvja1          74 IMWSQ   78 (80)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99986

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=139.55  Aligned_cols=79  Identities=32%  Similarity=0.477  Sum_probs=76.3

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|++||.|.        +|+|+++..+|.++|||||+|.++++|..|++.|||..|.|++
T Consensus         2 ~t~l~V~nLp~~~te~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~   73 (82)
T d1fxla1           2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE--------SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT   73 (82)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCcc--------cccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            47899999999999999999999999999        7999999988999999999999999999999999999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |+|.+|+
T Consensus        74 l~v~~Ak   80 (82)
T d1fxla1          74 IKVSYAR   80 (82)
T ss_dssp             CEEEECC
T ss_pred             EEEEEee
Confidence            9999997

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=141.61  Aligned_cols=79  Identities=25%  Similarity=0.411  Sum_probs=74.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      ++++|||+|||+++|+++|+++|++||.|.+        |+|++|+.+|.++|||||+|.+.++|..|++.|||..+.| 
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~   76 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRIIT--------SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA   76 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccc--------cccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCC
Confidence            6789999999999999999999999999998        9999999889999999999999999999999999999987 


Q ss_pred             -eEEEEEee
Q psy2160         293 -KKIKVERA  300 (773)
Q Consensus       293 -~~I~V~~A  300 (773)
                       ++|+|.+|
T Consensus        77 ~~~i~V~~A   85 (85)
T d1fxla2          77 TEPITVKFA   85 (85)
T ss_dssp             SSCCEEEEC
T ss_pred             CEEEEEEeC
Confidence             66999775

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6e-18  Score=143.57  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=76.8

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      .+|||+|||.++|+++|+++|++||.|..        |+|++|+.||.++|||||+|.++++|..|++.||+..|.|++|
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~--------v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l   73 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL   73 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEE--------EEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccce--------EEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            47999999999999999999999999998        9999999999999999999999999999999999999999999


Q ss_pred             EEEeeccc
Q psy2160         296 KVERAKFT  303 (773)
Q Consensus       296 ~V~~A~~~  303 (773)
                      .|.+|...
T Consensus        74 ~V~~A~~~   81 (85)
T d2u2fa_          74 LVQRASVG   81 (85)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999753

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.4e-17  Score=140.64  Aligned_cols=76  Identities=22%  Similarity=0.337  Sum_probs=73.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|.+        |+|++++.||+++|||||+|.+.++|..||+.||+..|.|+
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr   79 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR   79 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCCcc--------ccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5689999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEE
Q psy2160         294 KIKV  297 (773)
Q Consensus       294 ~I~V  297 (773)
                      +|+|
T Consensus        80 ~i~V   83 (83)
T d2cqca1          80 RIRV   83 (83)
T ss_dssp             EEEE
T ss_pred             EeEC
Confidence            9987

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.6e-18  Score=140.86  Aligned_cols=76  Identities=28%  Similarity=0.393  Sum_probs=73.2

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      |+|||+|||+++|+++|+++|++||.|.+        |+|++|+.||+++|||||+|.+.++|.+||+ +|+..|.|++|
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i   71 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTI   71 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSSCCC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcce--------eeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECCeEE
Confidence            68999999999999999999999999998        9999999999999999999999999999998 79999999999


Q ss_pred             EEEee
Q psy2160         296 KVERA  300 (773)
Q Consensus       296 ~V~~A  300 (773)
                      .|..|
T Consensus        72 ~V~~A   76 (77)
T d1uawa_          72 DPKVA   76 (77)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99876

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.9e-17  Score=141.46  Aligned_cols=81  Identities=27%  Similarity=0.306  Sum_probs=77.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        +|+|++|+.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         5 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~--------~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g   76 (88)
T d1rk8a_           5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG   76 (88)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------cccccccccccccccceeEEECCHHHHHHHHHHcCCCEECC
Confidence            4568999999999999999999999999999        79999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      ++|+|++|.
T Consensus        77 ~~l~V~~a~   85 (88)
T d1rk8a_          77 QTIQVDWCF   85 (88)
T ss_dssp             EECEEEESE
T ss_pred             EEEEEEEec
Confidence            999999997

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2e-17  Score=144.54  Aligned_cols=82  Identities=23%  Similarity=0.352  Sum_probs=78.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        |+|++|+.||+++|||||+|.+.++|..||+.||+..|.|+
T Consensus         7 ~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~--------v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr   78 (99)
T d1whwa_           7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR   78 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCcee--------eeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            6789999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|.+|...
T Consensus        79 ~i~V~~a~~~   88 (99)
T d1whwa_          79 MLHVLPSTIK   88 (99)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEECCCC
Confidence            9999998853

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=144.10  Aligned_cols=82  Identities=24%  Similarity=0.443  Sum_probs=78.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.+.++|..|++.|||..|.|
T Consensus         7 ~~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~--------~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g   78 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVV--------NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG   78 (93)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHhCCcc--------ccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECC
Confidence            4568999999999999999999999999998        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|.+|..
T Consensus        79 ~~l~V~~A~~   88 (93)
T d1x5ua1          79 KPIRVNKASA   88 (93)
T ss_dssp             CBCEEEETTT
T ss_pred             EEEEEEEcCC
Confidence            9999999984

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-17  Score=143.09  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=77.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        |+|++|..||.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~   78 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL   78 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhccccc--------ccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCE
Confidence            5689999999999999999999999999998        99999998999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|+.
T Consensus        79 ~i~v~~akp   87 (90)
T d2cq0a1          79 ILNVEWAKP   87 (90)
T ss_dssp             ECEEEESSC
T ss_pred             EEEEEeeeC
Confidence            999999874

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-17  Score=145.12  Aligned_cols=81  Identities=21%  Similarity=0.400  Sum_probs=77.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||+++|+++|+++|+.||.|..        |+++.+..+|.++|||||+|.+.++|..||+.|||..|.|+
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~   88 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK   88 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhccccc--------cceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCE
Confidence            5678999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        89 ~i~V~~a~~   97 (102)
T d2cpza1          89 RLKVQLKRS   97 (102)
T ss_dssp             ECEEECCCC
T ss_pred             EEEEEEeCC
Confidence            999999874

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-17  Score=141.14  Aligned_cols=80  Identities=23%  Similarity=0.374  Sum_probs=77.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        +|.|++++.+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus         6 ~s~tlfV~nlp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr   77 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIK--------KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR   77 (93)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCcc--------eeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            568999999999999999999999999999        899999999999999999999999999999999999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      +|+|.+|.
T Consensus        78 ~i~V~~a~   85 (93)
T d1h2vz_          78 IIRTDWDA   85 (93)
T ss_dssp             ECEEEEES
T ss_pred             EEEEEEcC
Confidence            99999986

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-17  Score=142.44  Aligned_cols=81  Identities=21%  Similarity=0.289  Sum_probs=77.8

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.+.++|..|+..|||..|.|+
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~   75 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR   75 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCC--------CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEE--------ecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCE
Confidence            568999999999999999999999999998        799999999999999999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|.+|+.
T Consensus        76 ~l~v~~a~p   84 (89)
T d2cqba1          76 TIRVNLAKP   84 (89)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            999999973

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.69  E-value=4.8e-17  Score=151.35  Aligned_cols=81  Identities=20%  Similarity=0.364  Sum_probs=77.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|.+        |+|++++.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus        41 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr  112 (139)
T d1u6fa1          41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK  112 (139)
T ss_dssp             TTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhccccc--------cccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCE
Confidence            5678999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus       113 ~l~V~~a~~  121 (139)
T d1u6fa1         113 RLKVALAAS  121 (139)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEEcCC
Confidence            999999874

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=144.90  Aligned_cols=79  Identities=22%  Similarity=0.400  Sum_probs=75.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||.|..        |+|+++..||+++|||||+|.+.++|..||. |||..|.|+
T Consensus        17 ~~~tifV~nL~~~~te~~l~~~F~~~G~V~~--------v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~~G~   87 (101)
T d2cq4a1          17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGV   87 (101)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHcCCCeEEE--------EEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEECCE
Confidence            4579999999999999999999999999998        9999999999999999999999999999996 999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|.
T Consensus        88 ~l~V~~a~   95 (101)
T d2cq4a1          88 PIIVQASQ   95 (101)
T ss_dssp             EEEEEEHH
T ss_pred             EEEEEECC
Confidence            99998875

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.4e-17  Score=141.29  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=76.9

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      .+|||+|||..+|+++|+++|++||.|.        +|+|++|+.||.++|||||+|.++++|..|++.|||..|.|++|
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~--------~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l   73 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL   73 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEE--------EEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccc--------eEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            4799999999999999999999999999        89999999999999999999999999999999999999999999


Q ss_pred             EEEEcccc
Q psy2160         581 KVERAKFT  588 (773)
Q Consensus       581 ~V~~a~~~  588 (773)
                      .|.+|...
T Consensus        74 ~V~~A~~~   81 (85)
T d2u2fa_          74 LVQRASVG   81 (85)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999854

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2.2e-17  Score=138.73  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=68.5

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||+++|+++|+++|++||.|..        ++++.+..+|.++|||||+|.+.++|..||+.|||..|.|++|
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i   73 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVAL--------SIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL   73 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCC--------EEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEe--------eeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            79999999999999999999999999987        7777777779999999999999999999999999999999999


Q ss_pred             EEEeecc
Q psy2160         296 KVERAKF  302 (773)
Q Consensus       296 ~V~~A~~  302 (773)
                      +|.+|++
T Consensus        74 ~V~~a~P   80 (81)
T d2ghpa1          74 VTKVSNP   80 (81)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            9998763

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.7e-17  Score=137.16  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=73.2

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||+++|+++|+++|++||.|..        |+|.+++. |+++|||||+|.+.++|..|++.|||..+.|++|+
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~--------~~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~   72 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDRS-GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN   72 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEESCSSC-CCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeE--------EEEEEeec-cccceeEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            6999999999999999999999999998        99999986 99999999999999999999999999999999999


Q ss_pred             EEeec
Q psy2160         297 VERAK  301 (773)
Q Consensus       297 V~~A~  301 (773)
                      |+.|.
T Consensus        73 V~~a~   77 (78)
T d1no8a_          73 IQLVT   77 (78)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99875

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.4e-17  Score=139.22  Aligned_cols=77  Identities=23%  Similarity=0.349  Sum_probs=73.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+.++|||+|||.++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus         7 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   78 (83)
T d2cqca1           7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG   78 (83)
T ss_dssp             CGGGCEEEESCCSSCCHHHHHHHHHTTSCEE--------EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCCc--------cccccccccccccccceEEEECCHHHHHHHHHHcCCCEECC
Confidence            3567999999999999999999999999999        89999999999999999999999999999999999999999


Q ss_pred             eEEEE
Q psy2160         578 KKIKV  582 (773)
Q Consensus       578 ~~i~V  582 (773)
                      ++|+|
T Consensus        79 r~i~V   83 (83)
T d2cqca1          79 RRIRV   83 (83)
T ss_dssp             EEEEE
T ss_pred             EEeEC
Confidence            99987

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.8e-17  Score=143.30  Aligned_cols=90  Identities=29%  Similarity=0.495  Sum_probs=84.0

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      +.+++|||+|||.++|+++|+++|+.||.|........+.+.+.++..||+++|||||+|.+.++|..||+.|||..|.|
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            37899999999999999999999999999977666667779999999999999999999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|+.
T Consensus        86 r~i~V~~a~~   95 (101)
T d2cpea1          86 SKLKVSLARK   95 (101)
T ss_dssp             EECEEECSSC
T ss_pred             EEEEEEEcCC
Confidence            9999999874

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.69  E-value=3e-17  Score=139.26  Aligned_cols=80  Identities=28%  Similarity=0.447  Sum_probs=75.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..+++|||+|||.++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.++++|..||+.|||..+.|
T Consensus         4 ~~~t~lfV~nlp~~~te~~l~~~F~~~G~i~--------~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   75 (85)
T d1b7fa2           4 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIV--------QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG   75 (85)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTSSSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEe--------eeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCC
Confidence            3568899999999999999999999999999        89999999999999999999999999999999999999976


Q ss_pred             --eEEEEEEc
Q psy2160         578 --KKIKVERA  585 (773)
Q Consensus       578 --~~i~V~~a  585 (773)
                        ++|+|.+|
T Consensus        76 ~~~~l~V~~A   85 (85)
T d1b7fa2          76 GSQPLSVRLA   85 (85)
T ss_dssp             CSSCCEEEEC
T ss_pred             CCeEEEEEEC
Confidence              88999987

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-17  Score=137.42  Aligned_cols=75  Identities=28%  Similarity=0.439  Sum_probs=71.6

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||+++|+++|+++|++||.|..        |+|++++.||+++|||||+|.++++|.+||+ +++..|.|++|.
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~--------~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~   71 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVD--------CTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVID   71 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCE
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccc--------cccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECCCEEE
Confidence            5999999999999999999999999998        9999999999999999999999999999998 799999999999


Q ss_pred             EEee
Q psy2160         297 VERA  300 (773)
Q Consensus       297 V~~A  300 (773)
                      |.+|
T Consensus        72 V~rA   75 (75)
T d1hd0a_          72 PKRA   75 (75)
T ss_dssp             ECCC
T ss_pred             eeEC
Confidence            9765

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.8e-17  Score=142.84  Aligned_cols=88  Identities=25%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC------CCCCcEEEEEecCHHHHHHHHHHhCC
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD------KHPEGVAQIFFKEPEAADACRELLNG  705 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~------~~~~G~afV~F~~~e~A~~Ai~~lnG  705 (773)
                      +++++|+|+||+++.++. ++..+.+|++||+++|++||.|.+|.|++      ....|+|||+|.++++|.+|+..|||
T Consensus         2 ~Ps~vl~l~N~~~~~~l~-~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~G   80 (104)
T d1o0pa_           2 HPTEVLCLMNMVLPEELL-DDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG   80 (104)
T ss_dssp             CCCSEEEEESSCCTTTTT-SHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCCCHHHcC-CchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCC
Confidence            467999999999998876 45678999999999999999999999865      23458999999999999999999999


Q ss_pred             ceeCCeEEEEEEecC
Q psy2160         706 RWFGQRQITAETWDG  720 (773)
Q Consensus       706 r~f~Gr~l~v~~~dg  720 (773)
                      ++|+||.|.|.||+.
T Consensus        81 r~f~gR~v~v~f~~~   95 (104)
T d1o0pa_          81 RKFANRVVVTKYCDP   95 (104)
T ss_dssp             CCSSSSCCEEEEECH
T ss_pred             CEECCeEEEEEEcCH
Confidence            999999999999984

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.8e-17  Score=141.40  Aligned_cols=95  Identities=51%  Similarity=1.014  Sum_probs=90.6

Q ss_pred             CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160         346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ  425 (773)
Q Consensus       346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G  425 (773)
                      .+.+++|+|+|||+|.++.+++.++.+|+++|++.|++||.|..|.+..++++|+|||+|.+.++|.+|+..|||+.|+|
T Consensus         5 ~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~g   84 (99)
T d2dita1           5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG   84 (99)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred             CCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECC
Confidence            56789999999999999988999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eeEEEEecCCCcccc
Q psy2160         426 RQITAETWDGKTRYK  440 (773)
Q Consensus       426 r~I~v~~~~~~~~~~  440 (773)
                      |+|.|.+++|+++|+
T Consensus        85 r~i~v~~~~g~~~~~   99 (99)
T d2dita1          85 RQITAQAWDGTTDYQ   99 (99)
T ss_dssp             EECEEEECCSCCCSS
T ss_pred             EEEEEEEeCCcCCCC
Confidence            999999999998774

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.5e-17  Score=141.35  Aligned_cols=82  Identities=26%  Similarity=0.361  Sum_probs=78.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|+.|..+|.++|||||+|.+.++|.+||+.|||..|.|
T Consensus         6 ~~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g   77 (90)
T d2cq0a1           6 DDNATIRVTNLSEDTRETDLQELFRPFGSIS--------RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH   77 (90)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhcccc--------cccccccccccccccceeEEECCHHHHHHHHHHhCCCEECC
Confidence            4568999999999999999999999999998        89999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|++|+.
T Consensus        78 ~~i~v~~akp   87 (90)
T d2cq0a1          78 LILNVEWAKP   87 (90)
T ss_dssp             EECEEEESSC
T ss_pred             EEEEEEeeeC
Confidence            9999999983

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7e-17  Score=141.09  Aligned_cols=83  Identities=22%  Similarity=0.343  Sum_probs=78.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|++|+.+|+++|||||+|.+.++|..||+.|||..|.|
T Consensus         6 ~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~--------~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   77 (99)
T d1whwa_           6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS--------ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG   77 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHhcCCce--------eeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECC
Confidence            3567899999999999999999999999998        79999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcccc
Q psy2160         578 KKIKVERAKFT  588 (773)
Q Consensus       578 ~~i~V~~a~~~  588 (773)
                      ++|+|.+|...
T Consensus        78 r~i~V~~a~~~   88 (99)
T d1whwa_          78 RMLHVLPSTIK   88 (99)
T ss_dssp             CEEEEEECCCC
T ss_pred             EEEEEEECCCC
Confidence            99999999853

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.4e-17  Score=138.18  Aligned_cols=79  Identities=25%  Similarity=0.418  Sum_probs=74.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC-
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g-  577 (773)
                      .+++|||+|||+++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.++++|..|++.|||..+.| 
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~   76 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRII--------TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA   76 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------ccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCC
Confidence            467899999999999999999999999999        79999999889999999999999999999999999999997 


Q ss_pred             -eEEEEEEc
Q psy2160         578 -KKIKVERA  585 (773)
Q Consensus       578 -~~i~V~~a  585 (773)
                       ++|+|.+|
T Consensus        77 ~~~i~V~~A   85 (85)
T d1fxla2          77 TEPITVKFA   85 (85)
T ss_dssp             SSCCEEEEC
T ss_pred             CEEEEEEeC
Confidence             56999886

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.4e-17  Score=140.94  Aligned_cols=82  Identities=22%  Similarity=0.389  Sum_probs=76.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC-CCCcceEEEEEecChHHHHHHHHHc-CCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSIL-DGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~-tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~  291 (773)
                      .+++|||+|||.++++++|+++|++||.|..        |+|+++.. ||.++|||||+|.+.++|..||+.| |+..|.
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~   78 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY   78 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCceE--------EEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEEC
Confidence            6689999999999999999999999999998        99998854 7999999999999999999999988 899999


Q ss_pred             CeEEEEEeeccc
Q psy2160         292 GKKIKVERAKFT  303 (773)
Q Consensus       292 g~~I~V~~A~~~  303 (773)
                      |++|+|.+|..+
T Consensus        79 Gr~l~V~~A~~~   90 (94)
T d2cpha1          79 GRRLVLEWADSE   90 (94)
T ss_dssp             SCBCEEEECCCC
T ss_pred             CEEEEEEEcCCC
Confidence            999999998743

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.5e-17  Score=134.75  Aligned_cols=76  Identities=21%  Similarity=0.333  Sum_probs=73.1

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||+++|+++|+++|++||.|..        +++..++.+|.++|||||+|.++++|.+|++ +||..|.|++|
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l~Gr~i   73 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNC   73 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEEC
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccc--------cccccCCCCcccccEEEEEEcCHHHHHHHHH-hCCCEECCEEE
Confidence            68999999999999999999999999998        9999999999999999999999999999997 89999999999


Q ss_pred             EEEee
Q psy2160         296 KVERA  300 (773)
Q Consensus       296 ~V~~A  300 (773)
                      .|.+|
T Consensus        74 ~V~~A   78 (79)
T d1l3ka2          74 EVRKA   78 (79)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99876

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.4e-17  Score=137.53  Aligned_cols=78  Identities=21%  Similarity=0.387  Sum_probs=73.5

Q ss_pred             EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEEE
Q psy2160         218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  297 (773)
Q Consensus       218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~V  297 (773)
                      |||+|||+++|+++|+++|++||.|...       ++++++..||+++|||||+|.+.++|..||+.|||..|.|++|+|
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~-------~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v   73 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQT-------PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV   73 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSC-------CEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeee-------EEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEE
Confidence            8999999999999999999999999763       588999999999999999999999999999999999999999999


Q ss_pred             Eeecc
Q psy2160         298 ERAKF  302 (773)
Q Consensus       298 ~~A~~  302 (773)
                      .+|..
T Consensus        74 ~~a~~   78 (83)
T d1x5ta1          74 SYAFK   78 (83)
T ss_dssp             EESCC
T ss_pred             EEecC
Confidence            99863

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.4e-17  Score=142.57  Aligned_cols=81  Identities=21%  Similarity=0.400  Sum_probs=77.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      +.++|||+|||+++|+++|+++|+.||.|.        +|+++.+..+|.++|||||+|.++++|..||+.|||..|.|+
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~   88 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVV--------SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK   88 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCS--------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhcccc--------ccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCE
Confidence            457899999999999999999999999998        799999999999999999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|++|..
T Consensus        89 ~i~V~~a~~   97 (102)
T d2cpza1          89 RLKVQLKRS   97 (102)
T ss_dssp             ECEEECCCC
T ss_pred             EEEEEEeCC
Confidence            999999983

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.2e-17  Score=142.01  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      +..++|||+|||..+|+++|+++|++||.|.+        |+|++++.||+++|||||+|.+.++|..||+.+|+ .|.|
T Consensus         8 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~G   78 (103)
T d2cqda1           8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG   78 (103)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred             CCCcEEEEeCCCCcCcHHHHHHHHhhcccccc--------eeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCC
Confidence            35688999999999999999999999999998        99999999999999999999999999999998876 6999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        79 r~l~V~~a~~   88 (103)
T d2cqda1          79 RKANVNLAYL   88 (103)
T ss_dssp             EECEEEESTT
T ss_pred             EEEEEEEcCC
Confidence            9999998863

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=8.7e-17  Score=133.96  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=72.9

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||+++|+++|+++|++||.|.        +|+|..++ +|+++|||||+|.++++|..|++.|||..+.|++|+
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~--------~~~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~   72 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN   72 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEESCSS-CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCe--------EEEEEEee-ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            699999999999999999999999998        79999987 599999999999999999999999999999999999


Q ss_pred             EEEcc
Q psy2160         582 VERAK  586 (773)
Q Consensus       582 V~~a~  586 (773)
                      |++|.
T Consensus        73 V~~a~   77 (78)
T d1no8a_          73 IQLVT   77 (78)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99986

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.5e-17  Score=136.85  Aligned_cols=76  Identities=28%  Similarity=0.393  Sum_probs=72.9

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||+++|+++|+++|++||.|.        +++|++|+.+|+++|||||+|.++++|.+|++ +|++.|.|+.|
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i   71 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTI   71 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCC--------CEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSSCCC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcc--------eeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECCeEE
Confidence            5799999999999999999999999998        79999999999999999999999999999996 79999999999


Q ss_pred             EEEEc
Q psy2160         581 KVERA  585 (773)
Q Consensus       581 ~V~~a  585 (773)
                      .|..|
T Consensus        72 ~V~~A   76 (77)
T d1uawa_          72 DPKVA   76 (77)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=137.08  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        |+|++|+.||.++|||||+|.++++|..||+.  ...|.|+
T Consensus         7 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~--~~~l~Gr   76 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGR   76 (90)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTE
T ss_pred             CCCeEEEECCCCCCCHHHHHHHHHhhcccce--------eeeccCCCCcccCCEEEEEECCHHHHHHHHhc--CCccCCE
Confidence            5689999999999999999999999999998        99999999999999999999999999999984  4478999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|.|.+|..
T Consensus        77 ~i~v~~a~~   85 (90)
T d2cqga1          77 WCDCKLPNS   85 (90)
T ss_dssp             EEEEECCCT
T ss_pred             EeEEEeCCC
Confidence            999998864

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.3e-17  Score=138.39  Aligned_cols=81  Identities=21%  Similarity=0.417  Sum_probs=77.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|||+|||+++|+++|.++|++||.|..        |.++++..+|.++|||||.|.+.++|..||+.|||..|.|+
T Consensus         4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~   75 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR   75 (90)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccccccc--------eeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5678999999999999999999999999998        99999888899999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        76 ~l~V~~a~~   84 (90)
T d1x5sa1          76 QIRVDQAGK   84 (90)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEcCC
Confidence            999999874

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=8.2e-17  Score=135.18  Aligned_cols=78  Identities=17%  Similarity=0.231  Sum_probs=68.2

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||+++|+++|+++|++||.|.        .+.++.+..+|.++|||||+|.++++|..|++.|||..+.|++|
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i   73 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVA--------LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL   73 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCC--------CEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEE--------eeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            6999999999999999999999999998        57788787789999999999999999999999999999999999


Q ss_pred             EEEEcc
Q psy2160         581 KVERAK  586 (773)
Q Consensus       581 ~V~~a~  586 (773)
                      +|.+|+
T Consensus        74 ~V~~a~   79 (81)
T d2ghpa1          74 VTKVSN   79 (81)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            999987

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.5e-17  Score=135.70  Aligned_cols=78  Identities=24%  Similarity=0.404  Sum_probs=74.5

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|++||.|.        .|+|+.|+.+|.++|||||+|.++++|.+||+ +++..|.|+.
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr~   76 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLT--------DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRV   76 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhcccc--------ceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECCEE
Confidence            47899999999999999999999999999        89999999999999999999999999999996 6999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |+|.+|.
T Consensus        77 i~V~~A~   83 (84)
T d1l3ka1          77 VEPKRAV   83 (84)
T ss_dssp             CEEEECC
T ss_pred             EEEEeee
Confidence            9999885

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=9.2e-17  Score=138.87  Aligned_cols=82  Identities=23%  Similarity=0.396  Sum_probs=76.5

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CCCCcceEEEEeCChHHHHHHHHHh-CCcee
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSIL-DGYEI  575 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i  575 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        +|+|+++.. +|.++|||||+|.++++|..||+.| ||..|
T Consensus         6 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~--------~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~   77 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQREIRELFSTFGELK--------TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL   77 (94)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCce--------EEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEE
Confidence            4568899999999999999999999999998        799988854 7999999999999999999999998 99999


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|++|+|.+|..
T Consensus        78 ~Gr~l~V~~A~~   89 (94)
T d2cpha1          78 YGRRLVLEWADS   89 (94)
T ss_dssp             SSCBCEEEECCC
T ss_pred             CCEEEEEEEcCC
Confidence            999999999984

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.5e-17  Score=142.65  Aligned_cols=80  Identities=29%  Similarity=0.527  Sum_probs=76.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|.++|++||.|..        |+|++++.||+++|||||+|.+.++|..||+.||+..|.|+
T Consensus         7 ~~rtl~V~nLp~~~te~~l~~~f~~~G~i~~--------v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~   78 (104)
T d1p1ta_           7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR   78 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccccccc--------cccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            4568999999999999999999999999998        99999999999999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|.
T Consensus        79 ~i~V~~a~   86 (104)
T d1p1ta_          79 ALRVDNAA   86 (104)
T ss_dssp             CBEEEETT
T ss_pred             EEEEEECC
Confidence            99998875

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=135.50  Aligned_cols=79  Identities=23%  Similarity=0.388  Sum_probs=73.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|+.||.|..        |+|+++..++  +|||||+|.+.++|..|++.|||..|.|+
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~d~~~~--~~~afV~f~~~~~A~~A~~~l~~~~~~g~   76 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGK   76 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCCCSS--CCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCcee--------eeeecccCcc--ceeeEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5689999999999999999999999999998        9999987643  89999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        77 ~i~v~~a~~   85 (90)
T d2cqia1          77 EVKVNWATT   85 (90)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999863

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.2e-16  Score=135.53  Aligned_cols=76  Identities=24%  Similarity=0.357  Sum_probs=71.7

Q ss_pred             EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCC---CcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK---DFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg---~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      |||+|||.++|+++|+++|++||.|..        |+|++++.++   .++|||||+|.+.++|..|++.|||..|.|++
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~   72 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK   72 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccc--------cceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            799999999999999999999999998        9999988755   46899999999999999999999999999999


Q ss_pred             EEEEeec
Q psy2160         295 IKVERAK  301 (773)
Q Consensus       295 I~V~~A~  301 (773)
                      |+|++|.
T Consensus        73 i~V~~a~   79 (85)
T d2cpfa1          73 LEVRISE   79 (85)
T ss_dssp             CEEECSS
T ss_pred             EEEEECC
Confidence            9999876

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=140.25  Aligned_cols=80  Identities=21%  Similarity=0.355  Sum_probs=75.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        ++|.+|+.|+.++|||||+|.+.++|..||+ +++..|.|+
T Consensus        19 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~l~G~   89 (103)
T d1x4ba1          19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR   89 (103)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEEETTE
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhhCcccc--------eeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCeECCE
Confidence            5589999999999999999999999999998        9999999989999999999999999999997 799999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|.|.+|..
T Consensus        90 ~i~V~~a~~   98 (103)
T d1x4ba1          90 VVEPKRAVA   98 (103)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEEECcc
Confidence            999998874

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.3e-17  Score=134.58  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=70.8

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||+++|+++|+++|++||.|..        |+|++|+.||+++|||||+|.+.++|..||+ +++..|.|+.|.
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~--------v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~i~g~~i~   71 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE   71 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEE--------EECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCCBTTBCCE
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCccc--------ccccccccccccccEEEEEECCHHHHHHHHh-hCCCEECCEEeE
Confidence            6999999999999999999999999998        9999999999999999999999999999997 577789999999


Q ss_pred             EEee
Q psy2160         297 VERA  300 (773)
Q Consensus       297 V~~A  300 (773)
                      |..|
T Consensus        72 vk~A   75 (75)
T d1x0fa1          72 IKVA   75 (75)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9765

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=7e-17  Score=133.46  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=72.0

Q ss_pred             EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      +|||+|||+++|+++|+++|+.||.|..        +.+.+++.+|.++|||||+|.+.++|..|++ +|+..|.|++|+
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~   71 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE   71 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcce--------eeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCeEEE
Confidence            5999999999999999999999999998        8999999889999999999999999999997 999999999999


Q ss_pred             EEee
Q psy2160         297 VERA  300 (773)
Q Consensus       297 V~~A  300 (773)
                      |++|
T Consensus        72 V~~A   75 (75)
T d2msta_          72 CKKA   75 (75)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9876

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.3e-17  Score=133.76  Aligned_cols=75  Identities=28%  Similarity=0.439  Sum_probs=71.5

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||+++|+++|+++|++||.|.        +|+|++|+.+|+++|||||+|.++++|.+||+ +++..|.|+.|.
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~--------~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~   71 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVV--------DCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVID   71 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCE
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhcccc--------ccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECCCEEE
Confidence            489999999999999999999999999        89999999999999999999999999999996 799999999999


Q ss_pred             EEEc
Q psy2160         582 VERA  585 (773)
Q Consensus       582 V~~a  585 (773)
                      |.+|
T Consensus        72 V~rA   75 (75)
T d1hd0a_          72 PKRA   75 (75)
T ss_dssp             ECCC
T ss_pred             eeEC
Confidence            9765

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=139.48  Aligned_cols=78  Identities=22%  Similarity=0.388  Sum_probs=74.8

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        +|+|++|..+|+++|||||+|.+.++|..|+. |||..|.|+.
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G~V~--------~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~-l~g~~~~G~~   88 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVGKVR--------DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVP   88 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCSCCSSSCCCCEEEEESCGGGHHHHHH-HTTEEETTEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCCeEE--------EEEeeecCCCccccceEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence            36899999999999999999999999998        89999999999999999999999999999995 9999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |+|.+|+
T Consensus        89 l~V~~a~   95 (101)
T d2cq4a1          89 IIVQASQ   95 (101)
T ss_dssp             EEEEEHH
T ss_pred             EEEEECC
Confidence            9999987

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=138.70  Aligned_cols=90  Identities=30%  Similarity=0.506  Sum_probs=82.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..+++|||+|||.++|+++|+++|+.||.|........+.+.+..+..+|+++|||||+|.++++|..||+.|||..|.|
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            45789999999999999999999999999875555556678999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|++|+.
T Consensus        86 r~i~V~~a~~   95 (101)
T d2cpea1          86 SKLKVSLARK   95 (101)
T ss_dssp             EECEEECSSC
T ss_pred             EEEEEEEcCC
Confidence            9999999984

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.4e-16  Score=135.05  Aligned_cols=77  Identities=23%  Similarity=0.339  Sum_probs=72.1

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCC---CCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK---DFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg---~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      |||+|||.++|+++|+++|++||.|.        +|+|++++.++   .++|||||+|.++++|..|++.|||..|+|++
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~   72 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIK--------SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK   72 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCcc--------ccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            79999999999999999999999999        79999887755   46899999999999999999999999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |+|++|..
T Consensus        73 i~V~~a~~   80 (85)
T d2cpfa1          73 LEVRISER   80 (85)
T ss_dssp             CEEECSSC
T ss_pred             EEEEECCC
Confidence            99999874

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-16  Score=136.26  Aligned_cols=81  Identities=21%  Similarity=0.420  Sum_probs=77.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ...+|||+|||+++|+++|+++|++||.|.        .|.++.+..+|.++|||||+|.++++|..|++.|||..|.|+
T Consensus         4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~   75 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQIS--------EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR   75 (90)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhcccccc--------ceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            457899999999999999999999999998        799999888899999999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|.+|..
T Consensus        76 ~l~V~~a~~   84 (90)
T d1x5sa1          76 QIRVDQAGK   84 (90)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEcCC
Confidence            999999973

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-16  Score=138.24  Aligned_cols=81  Identities=22%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||..+|+++|+++|+.||.|.        +|+|++|..+|+++|||||+|.+.++|..||+.+|+ .|.|+
T Consensus         9 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr   79 (103)
T d2cqda1           9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIE--------EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR   79 (103)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred             CCcEEEEeCCCCcCcHHHHHHHHhhccccc--------ceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCCE
Confidence            457899999999999999999999999999        899999999999999999999999999999998876 79999


Q ss_pred             EEEEEEcccc
Q psy2160         579 KIKVERAKFT  588 (773)
Q Consensus       579 ~i~V~~a~~~  588 (773)
                      +|.|.+|...
T Consensus        80 ~l~V~~a~~~   89 (103)
T d2cqda1          80 KANVNLAYLG   89 (103)
T ss_dssp             ECEEEESTTT
T ss_pred             EEEEEEcCCC
Confidence            9999999743

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=133.92  Aligned_cols=78  Identities=21%  Similarity=0.387  Sum_probs=73.3

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160         503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  582 (773)
Q Consensus       503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V  582 (773)
                      |||+|||+++|+++|+++|++||.|..       .++|+++..+|+++|||||+|.++++|..|++.|||..|.|++|+|
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~-------~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v   73 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQ-------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV   73 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSS-------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceee-------eEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEE
Confidence            799999999999999999999999862       3578999999999999999999999999999999999999999999


Q ss_pred             EEccc
Q psy2160         583 ERAKF  587 (773)
Q Consensus       583 ~~a~~  587 (773)
                      .+|..
T Consensus        74 ~~a~~   78 (83)
T d1x5ta1          74 SYAFK   78 (83)
T ss_dssp             EESCC
T ss_pred             EEecC
Confidence            99973

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.3e-16  Score=134.05  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||+++|+++|+++|+.||.|.        +|+|++|+.+|.++|||||+|.++++|.+||+.  +..|.|
T Consensus         6 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~--~~~l~G   75 (90)
T d2cqga1           6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL--------MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDG   75 (90)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETT
T ss_pred             cCCCeEEEECCCCCCCHHHHHHHHHhhcccc--------eeeeccCCCCcccCCEEEEEECCHHHHHHHHhc--CCccCC
Confidence            3568999999999999999999999999999        899999999999999999999999999999984  458999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|.+|..
T Consensus        76 r~i~v~~a~~   85 (90)
T d2cqga1          76 RWCDCKLPNS   85 (90)
T ss_dssp             EEEEEECCCT
T ss_pred             EEeEEEeCCC
Confidence            9999999873

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.9e-16  Score=133.76  Aligned_cols=80  Identities=23%  Similarity=0.357  Sum_probs=74.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        +|+|+++..+  .+|||||+|.+.++|..|+..|||..|.|
T Consensus         6 ~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~~--~~~~afV~f~~~~~A~~A~~~l~~~~~~g   75 (90)
T d2cqia1           6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCK--------SCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG   75 (90)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCce--------eeeeecccCc--cceeeEEEECCHHHHHHHHHHcCCCEECC
Confidence            4568999999999999999999999999998        8999999764  48999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.+|+.
T Consensus        76 ~~i~v~~a~~   85 (90)
T d2cqia1          76 KEVKVNWATT   85 (90)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEcCC
Confidence            9999999983

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-16  Score=131.07  Aligned_cols=77  Identities=21%  Similarity=0.319  Sum_probs=73.3

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||+++|+++|+++|++||.|.        .+++..++.++.++|||||+|.++++|.+|+. |||..|.|++
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~-~~~~~l~Gr~   72 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHN   72 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEE
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhcccc--------ccccccCCCCcccccEEEEEEcCHHHHHHHHH-hCCCEECCEE
Confidence            47899999999999999999999999999        79999999999999999999999999999994 8999999999


Q ss_pred             EEEEEc
Q psy2160         580 IKVERA  585 (773)
Q Consensus       580 i~V~~a  585 (773)
                      |.|..|
T Consensus        73 i~V~~A   78 (79)
T d1l3ka2          73 CEVRKA   78 (79)
T ss_dssp             CEEEEC
T ss_pred             EEEEEC
Confidence            999987

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.64  E-value=2.2e-16  Score=146.88  Aligned_cols=82  Identities=20%  Similarity=0.359  Sum_probs=78.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|++|+.||+++|||||+|.+.++|..||+.|||..|.|
T Consensus        40 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~g  111 (139)
T d1u6fa1          40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIE--------SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN  111 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEE--------EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhcccc--------ccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECC
Confidence            3457899999999999999999999999999        79999999999999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|.+|..
T Consensus       112 r~l~V~~a~~  121 (139)
T d1u6fa1         112 KRLKVALAAS  121 (139)
T ss_dssp             CEEEEEESSC
T ss_pred             EEEEEEEcCC
Confidence            9999999974

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-16  Score=139.64  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=73.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |++..+   +.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         6 ~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~--------i~~~~~---~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr   74 (114)
T d2f9da1           6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNT---PETRGTAYVVYEDIFDAKNACDHLSGFNVCNR   74 (114)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECS---TTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcCCeEe--------eccccc---CCcCCeEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6789999999999999999999999999998        888754   67799999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.++..
T Consensus        75 ~l~V~~a~~   83 (114)
T d2f9da1          75 YLVVLYYNA   83 (114)
T ss_dssp             ECEEEECCH
T ss_pred             EEEEEEcCC
Confidence            999998764

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.1e-16  Score=133.33  Aligned_cols=80  Identities=21%  Similarity=0.393  Sum_probs=74.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        |+|+.+..  .++|||||+|.+.++|..||+.||+..|.|+
T Consensus        10 ~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~--------v~~~~~~~--~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~   79 (93)
T d2cq3a1          10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR   79 (93)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcceeee--------cccccccc--CCcceeEEEECCHHHHHHHHHHcCCCEECCE
Confidence            5688999999999999999999999999998        99999875  4799999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|++|...
T Consensus        80 ~l~V~~A~~r   89 (93)
T d2cq3a1          80 KIEVNNATAR   89 (93)
T ss_dssp             ECEEEECCSS
T ss_pred             EEEEEecCcC
Confidence            9999998743

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-16  Score=140.45  Aligned_cols=79  Identities=29%  Similarity=0.529  Sum_probs=76.2

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|++||.|.        +|+|++++.+|+++|||||+|.+.++|..|++.|||..|.|++
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~--------~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~   79 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVV--------SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA   79 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCS--------EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhcccccc--------ccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            36899999999999999999999999998        8999999999999999999999999999999999999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |+|.+|.
T Consensus        80 i~V~~a~   86 (104)
T d1p1ta_          80 LRVDNAA   86 (104)
T ss_dssp             BEEEETT
T ss_pred             EEEEECC
Confidence            9999987

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.7e-16  Score=131.67  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=72.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        |+|.++.. |+++|||||+|.++++|.+||+ +++..|.|+
T Consensus         5 ~~rtvfV~nlp~~~te~~l~~~F~~~G~v~~--------v~l~~~~~-~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~   74 (85)
T d1zh5a2           5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET   74 (85)
T ss_dssp             HTTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECTT-CCEEEEEEEEESCHHHHHHHHT-CCCCEETTE
T ss_pred             CcCEEEEECCCCCCCHHHHHHHHHHhccccc--------ceeeeecc-CCcceEEEEEEcCHHHHHHHHH-HCCCEECCE
Confidence            4689999999999999999999999999998        99988875 9999999999999999999997 799999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|.|.++.
T Consensus        75 ~l~v~~~~   82 (85)
T d1zh5a2          75 DLLILFKD   82 (85)
T ss_dssp             ECEEEEGG
T ss_pred             EEEEEEcC
Confidence            99997754

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.7e-16  Score=132.69  Aligned_cols=81  Identities=21%  Similarity=0.383  Sum_probs=75.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||+++|+++|+++|++||.|.        .|+|+.+..  .++|||||+|.++++|.+|+..|||..|.
T Consensus         8 ~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~--------~v~~~~~~~--~~kg~afV~f~~~~~a~~Ai~~l~~~~~~   77 (93)
T d2cq3a1           8 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE   77 (93)
T ss_dssp             SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE--------EEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHhhcceee--------ecccccccc--CCcceeEEEECCHHHHHHHHHHcCCCEEC
Confidence            34568999999999999999999999999999        799999874  47999999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|+|.+|+.
T Consensus        78 g~~l~V~~A~~   88 (93)
T d2cq3a1          78 GRKIEVNNATA   88 (93)
T ss_dssp             TEECEEEECCS
T ss_pred             CEEEEEEecCc
Confidence            99999999984

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-16  Score=130.34  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||+++|+++|+++|+.||.|.        .+.+..++.+|.++|||||+|.+.++|..|++ |||..|.|++|+
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~--------~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~   71 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVD--------DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE   71 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCS--------EECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCE
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcc--------eeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCeEEE
Confidence            489999999999999999999999998        79999999899999999999999999999996 999999999999


Q ss_pred             EEEc
Q psy2160         582 VERA  585 (773)
Q Consensus       582 V~~a  585 (773)
                      |++|
T Consensus        72 V~~A   75 (75)
T d2msta_          72 CKKA   75 (75)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.1e-16  Score=133.17  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             CccEEEEcCCCCCCC-HHHHHHHHhhcCcccccccCCceeEEEEec-CCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYVSNLPLDLT-QEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~t-e~el~~~Fs~~G~I~~~~~~~~p~i~l~~d-~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      .+++|||+|||+++| +++|+++|++||.|..        |+|+++ ..+|+++|||||+|.+.++|..||+ ||+..|.
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~--------v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~   73 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIEK--------INIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLG   73 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE--------EECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEET
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhccc--------eeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEEC
Confidence            468999999999986 5679999999999998        998775 4579999999999999999999997 9999999


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|++|..
T Consensus        74 gr~l~V~~a~~   84 (86)
T d2ghpa3          74 NREISVSLADK   84 (86)
T ss_dssp             TEEEEEEECCC
T ss_pred             CEEEEEEEcCC
Confidence            99999999863

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6.5e-16  Score=131.15  Aligned_cols=80  Identities=16%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      |..+.|||+|||+++|+++|+++|+.||.|...       +.+..+.. |+++|+|||+|.+.++|..||+.||+..|.|
T Consensus         7 p~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~-------~~~~~~~~-g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~g   78 (86)
T d2cqpa1           7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS-------VCLKYNEK-GMPTGEAMVAFESRDEATAAVIDLNDRPIGS   78 (86)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT-------CEEEECSS-SCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcccceeE-------EEEEeCCC-CCcceEEEEEEcCcHHHHHHHHHcCCCEECC
Confidence            467899999999999999999999999999763       66776665 9999999999999999999999999999999


Q ss_pred             eEEEEEee
Q psy2160         293 KKIKVERA  300 (773)
Q Consensus       293 ~~I~V~~A  300 (773)
                      ++|+|..|
T Consensus        79 r~i~v~l~   86 (86)
T d2cqpa1          79 RKVKLVLG   86 (86)
T ss_dssp             EECEEEES
T ss_pred             EEEEEEEC
Confidence            99999764

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.2e-16  Score=137.80  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=73.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..+++|||+|||.++|+++|+++|++||.|.        +|++..+   +.++|||||+|.+.++|..||+.|||..|.|
T Consensus         5 ~~~r~l~V~nLp~~~te~~l~~~F~~~G~v~--------~i~~~~~---~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~g   73 (114)
T d2f9da1           5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIR--------QIRVGNT---PETRGTAYVVYEDIFDAKNACDHLSGFNVCN   73 (114)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEECS---TTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCeE--------eeccccc---CCcCCeEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3578999999999999999999999999998        7998866   5579999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.++..
T Consensus        74 r~l~V~~a~~   83 (114)
T d2f9da1          74 RYLVVLYYNA   83 (114)
T ss_dssp             EECEEEECCH
T ss_pred             EEEEEEEcCC
Confidence            9999999873

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-16  Score=133.41  Aligned_cols=78  Identities=18%  Similarity=0.352  Sum_probs=73.2

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ...+|||+|||+++|+++|+++|+.||.|.        .|+|+.+..  .++|||||+|.+.++|..||+.|||..|.|+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   76 (89)
T d1cvja2           7 GVGNIFIKNLDKSIDNKALYDTFSAFGNIL--------SCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDR   76 (89)
T ss_dssp             TTTEEEEESCCSSCCHHHHHHHHHTTSCEE--------EEEECCBTT--BCCSCEEEEESCHHHHHHHTTSSSEEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCce--------EEEEEeecC--CCcceeEEEECCHHHHHHHHHHcCCCEECCE
Confidence            356899999999999999999999999998        799999874  4789999999999999999999999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      +|.|.+|+
T Consensus        77 ~i~V~~a~   84 (89)
T d1cvja2          77 KVFVGRFK   84 (89)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99999998

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-16  Score=134.27  Aligned_cols=79  Identities=18%  Similarity=0.341  Sum_probs=73.3

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||.|..        ++|+.+..  .++|||||+|.+.++|..||+.|||..|.|+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~   76 (89)
T d1cvja2           7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDR   76 (89)
T ss_dssp             TTTEEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEECCBTT--BCCSCEEEEESCHHHHHHHTTSSSEEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEEeecC--CCcceeEEEECCHHHHHHHHHHcCCCEECCE
Confidence            3468999999999999999999999999998        99999874  4789999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        77 ~i~V~~a~~   85 (89)
T d1cvja2          77 KVFVGRFKS   85 (89)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999873

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=130.04  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=70.8

Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      +|||+|||+++|+++|+++|++||.|.        +|+|++|+.+|.++|||||+|.+.++|.+||+ +++..|.|+.|.
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~--------~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~i~g~~i~   71 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVE--------SIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE   71 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEE--------EEECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCCBTTBCCE
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcc--------cccccccccccccccEEEEEECCHHHHHHHHh-hCCCEECCEEeE
Confidence            599999999999999999999999999        79999999999999999999999999999995 577889999999


Q ss_pred             EEEc
Q psy2160         582 VERA  585 (773)
Q Consensus       582 V~~a  585 (773)
                      |..|
T Consensus        72 vk~A   75 (75)
T d1x0fa1          72 IKVA   75 (75)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9865

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.8e-16  Score=135.48  Aligned_cols=79  Identities=22%  Similarity=0.352  Sum_probs=74.9

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||+++|+++|+++|++||.|.        .+.|.+|+.++.++|||||+|.+.++|..||. ++|..|.|+.
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~-~~~~~l~G~~   90 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLT--------DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRV   90 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCS--------EEEEECCTTTSSCCSEEEEECSSHHHHHHHHT-SCSEEETTEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCccc--------ceeecccccCCCccCeEEEEECCHHHHHHHHH-hCCCeECCEE
Confidence            36899999999999999999999999999        79999999999999999999999999999995 7999999999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |.|.+|..
T Consensus        91 i~V~~a~~   98 (103)
T d1x4ba1          91 VEPKRAVA   98 (103)
T ss_dssp             EEEECCSS
T ss_pred             EEEEECcc
Confidence            99999883

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.2e-16  Score=134.19  Aligned_cols=81  Identities=27%  Similarity=0.478  Sum_probs=75.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC------C
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD------G  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln------g  287 (773)
                      .+++|||+|||+++|+++|+++|++||.|..        +.+..+..++.++|||||+|.+.++|..||+.||      |
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g   78 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG   78 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhcccccee--------eeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCC
Confidence            6789999999999999999999999999998        9999999889999999999999999999999886      6


Q ss_pred             ceecCeEEEEEeecc
Q psy2160         288 YEIRGKKIKVERAKF  302 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~  302 (773)
                      ..|.|++|+|.+|..
T Consensus        79 ~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          79 LKLDGRQLKVDLAVT   93 (98)
T ss_dssp             EESSSCEEEEECCCC
T ss_pred             cEECCEEEEEEECCC
Confidence            678899999998873

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=8.2e-16  Score=126.87  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      |+|||+|||+++|+++|+++|+.||.|..        |+|.+++. + .+|||||+|.+.++|.+||. +|+..|.|++|
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~--------v~~~~~~~-~-~~~~afV~F~~~~~a~~Al~-~~~~~i~g~~i   69 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIH--------VDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEI   69 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEE--------EEEEeecc-c-cceEEEEEEcchHHhHHHHH-hcCcEECCEEE
Confidence            68999999999999999999999999998        99999886 4 35899999999999999996 89999999999


Q ss_pred             EEEee
Q psy2160         296 KVERA  300 (773)
Q Consensus       296 ~V~~A  300 (773)
                      .|..+
T Consensus        70 ~V~~~   74 (75)
T d2ghpa2          70 IVSHL   74 (75)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99875

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.60  E-value=1.8e-16  Score=136.01  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=72.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..        ++|+.+. +|+++|||||+|.+.++|..||+ ||+..|.|+
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~--------~~v~~~~-~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~   81 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKND--------LAVVDVR-TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN   81 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--------CCCCEEE-EETTTTEEEEEESSHHHHHHHHH-GGGEEETTE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEE--------eeeeecC-CCCccEEeEEeeCCHHHHHHHHh-cCCcEECCE
Confidence            5679999999999999999999999999987        7887655 49999999999999999999997 999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      +|+|.+|+
T Consensus        82 ~i~V~~ak   89 (91)
T d1fjeb1          82 EIKLEKPK   89 (91)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEecC
Confidence            99999886

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-16  Score=137.55  Aligned_cols=81  Identities=23%  Similarity=0.344  Sum_probs=76.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|.++|+.||.|..        +++..+..+|+++|||||.|.+.++|..||+.|||..|.|+
T Consensus        17 ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~   88 (102)
T d2cpxa1          17 PNKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK   88 (102)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSS--------SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhccceee--------EEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCE
Confidence            5689999999999999999999999999998        78888877799999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|+.
T Consensus        89 ~l~V~~ak~   97 (102)
T d2cpxa1          89 ILVIEFGKN   97 (102)
T ss_dssp             BCEEEECCC
T ss_pred             EEEEEeCCC
Confidence            999999874

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.9e-16  Score=135.56  Aligned_cols=79  Identities=19%  Similarity=0.369  Sum_probs=73.6

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||+++|+++|+++|+.||.|..        +++..+.. |.++|||||+|.+.++|..||+.|||..|.|+
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~~~~~~~-~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr   87 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDSS-GTSRGVGFARMESTEKCEAVIGHFNGKFIKTP   87 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECSS-SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccc--------eeeecccc-cccccceeEEeCCHHHHHHHHHHhCCCEECCc
Confidence            5689999999999999999999999999988        88888865 99999999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      ++.|.++.
T Consensus        88 ~~~v~~~~   95 (101)
T d1x5oa1          88 PGVSAPTE   95 (101)
T ss_dssp             TTSCCCSS
T ss_pred             CCccCCCC
Confidence            99886654

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=7.7e-16  Score=130.67  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             CCCEEEEcCCCCCCC-HHHHHHHHHhcCcceeccCCCceEEEEEec-CCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         499 ENTKVYVSNLPLDLT-QEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t-~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d-~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..++|||+|||.++| +++|+++|++||.|.        +|+|..+ ..+|+++|||||+|.+.++|..|++ |||..|.
T Consensus         3 e~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~--------~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~   73 (86)
T d2ghpa3           3 EGREIMIRNLSTELLDENLLRESFEGFGSIE--------KINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLG   73 (86)
T ss_dssp             TTTEEEEEEECTTTCCHHHHHHHHGGGSCEE--------EEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEET
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHhhhhcc--------ceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEEC
Confidence            367999999999987 556999999999999        7998765 4578999999999999999999995 9999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|+|++|+
T Consensus        74 gr~l~V~~a~   83 (86)
T d2ghpa3          74 NREISVSLAD   83 (86)
T ss_dssp             TEEEEEEECC
T ss_pred             CEEEEEEEcC
Confidence            9999999987

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.7e-15  Score=131.86  Aligned_cols=82  Identities=27%  Similarity=0.472  Sum_probs=76.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC------
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD------  571 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln------  571 (773)
                      ...++|||+|||+++|+++|+++|++||.|.        .+.++.+..++.++|||||+|.+.++|..||+.||      
T Consensus         6 ~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~   77 (98)
T d1x4ha1           6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLK--------YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG   77 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHhccccce--------eeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccC
Confidence            3568999999999999999999999999998        79999999889999999999999999999999886      


Q ss_pred             CceecCeEEEEEEccc
Q psy2160         572 GYEIRGKKIKVERAKF  587 (773)
Q Consensus       572 g~~i~g~~i~V~~a~~  587 (773)
                      |..|.|++|+|.+|..
T Consensus        78 g~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          78 GLKLDGRQLKVDLAVT   93 (98)
T ss_dssp             CEESSSCEEEEECCCC
T ss_pred             CcEECCEEEEEEECCC
Confidence            6778899999999973

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=132.50  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=71.9

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCc-ccccccCCceeEEEEecC-CCCCcceEEEEEecChHHHHHHHHHcCCc--ee
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGY--EI  290 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~-I~~~~~~~~p~i~l~~d~-~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l  290 (773)
                      ||+|||+|||.++|+++|+++|+.||. |..        |+|+++. .+|+++|||||+|.+.++|..|++.|++.  .+
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~--------v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~   72 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL   72 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceE--------EEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEE
Confidence            689999999999999999999999996 676        9999885 46899999999999999999999988654  45


Q ss_pred             cCeEEEEEeecc
Q psy2160         291 RGKKIKVERAKF  302 (773)
Q Consensus       291 ~g~~I~V~~A~~  302 (773)
                      .|++|+|.+|..
T Consensus        73 ~g~~i~V~~A~p   84 (96)
T d2disa1          73 WGHQIAVDWAEP   84 (96)
T ss_dssp             TTBCCEEEESCS
T ss_pred             CCEEEEEEEcCC
Confidence            799999999974

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-15  Score=131.19  Aligned_cols=78  Identities=24%  Similarity=0.405  Sum_probs=71.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||+++|+++|+++|+.||.|..        |.+..+   +.++|||||+|.+.++|..||+.||+..|.|+
T Consensus        13 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~---~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~   81 (95)
T d1x4aa1          13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY   81 (95)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhcCCceEE--------EEeccc---ccccceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            6789999999999999999999999999987        776543   56789999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|+.
T Consensus        82 ~l~V~~a~~   90 (95)
T d1x4aa1          82 RLRVEFPRS   90 (95)
T ss_dssp             ECEEECCCC
T ss_pred             EEEEEeccC
Confidence            999999863

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-16  Score=128.78  Aligned_cols=71  Identities=20%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160         218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  296 (773)
Q Consensus       218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~  296 (773)
                      |||+|||.++|+++|+++|++||.|..        +++.+++.+|.++|+|||+|.+.++|..|++.|||..|.|+.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccc--------cccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            799999999999999999999999998        99999999999999999999999999999999999999998764

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-16  Score=136.32  Aligned_cols=82  Identities=24%  Similarity=0.359  Sum_probs=76.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .++++|||+|||.++|+++|+++|+.||.|.        .+.+..+..+|.++|||||+|.+.++|..|++.|||..|.|
T Consensus        16 ~ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g   87 (102)
T d2cpxa1          16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKK--------GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG   87 (102)
T ss_dssp             SCCSEEEEECCCTTCCHHHHHHHTHHHHHSS--------SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhcccee--------eEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECC
Confidence            4578999999999999999999999999998        67888887789999999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|++|+.
T Consensus        88 ~~l~V~~ak~   97 (102)
T d2cpxa1          88 KILVIEFGKN   97 (102)
T ss_dssp             CBCEEEECCC
T ss_pred             EEEEEEeCCC
Confidence            9999999983

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.9e-15  Score=130.85  Aligned_cols=75  Identities=23%  Similarity=0.430  Sum_probs=70.6

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      |.+++|||+|||.++|+++|+++|++||.|..        |+|+++      +|||||.|.+.++|..||..|||..|.|
T Consensus        16 ~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~--------v~i~~~------kg~afV~f~~~~~A~~Ai~~l~~~~i~g   81 (96)
T d1x4ga1          16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG   81 (96)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHhCCceE--------EEEEec------ceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            36789999999999999999999999999998        999865      6799999999999999999999999999


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      ++|+|.+|+
T Consensus        82 ~~l~v~~ak   90 (96)
T d1x4ga1          82 HVVKCYWGK   90 (96)
T ss_dssp             EECEEECCC
T ss_pred             EEEEEEEcC
Confidence            999999886

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=7.2e-16  Score=131.69  Aligned_cols=77  Identities=22%  Similarity=0.329  Sum_probs=70.5

Q ss_pred             CccEEEEcCCCCCCCHHHH---HHHHhhcCcccccccCCceeEEEEecCCCCCc---ceEEEEEecChHHHHHHHHHcCC
Q psy2160         214 ESTKVYVSNLPLDLTQEEF---VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF---KGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el---~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~---kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      +.++|||+|||+++|+++|   .++|++||.|..        |.|++++.++.+   +|||||+|.+.++|..||+.|||
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~--------v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng   78 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN   78 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCceE--------EEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCC
Confidence            4578999999999999999   678999999998        999999876554   59999999999999999999999


Q ss_pred             ceecCeEEEEE
Q psy2160         288 YEIRGKKIKVE  298 (773)
Q Consensus       288 ~~l~g~~I~V~  298 (773)
                      ..|.|++|+|.
T Consensus        79 ~~~~gr~lkvS   89 (89)
T d2cpia1          79 VVVDGRTLKAS   89 (89)
T ss_dssp             EEETTEEEEEE
T ss_pred             CEECCEEEEEC
Confidence            99999999984

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-15  Score=129.52  Aligned_cols=79  Identities=24%  Similarity=0.410  Sum_probs=72.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..+++|||+|||+++|+++|+++|+.||.|.        .+.+..+   +.++|||||+|.+.++|..||+.|||..|.|
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~~~~~---~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g   80 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--------DIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG   80 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhcCCceE--------EEEeccc---ccccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence            4568999999999999999999999999998        6776655   4569999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|++|+.
T Consensus        81 ~~l~V~~a~~   90 (95)
T d1x4aa1          81 YRLRVEFPRS   90 (95)
T ss_dssp             EECEEECCCC
T ss_pred             EEEEEEeccC
Confidence            9999999983

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-15  Score=129.74  Aligned_cols=76  Identities=24%  Similarity=0.421  Sum_probs=71.2

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|+|+++      +|||||+|.+.++|..|+..|||..|.|
T Consensus        16 ~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~--------~v~i~~~------kg~afV~f~~~~~A~~Ai~~l~~~~i~g   81 (96)
T d1x4ga1          16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--------EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG   81 (96)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHhCCce--------EEEEEec------ceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            3468999999999999999999999999999        7999865      7899999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|.+|+.
T Consensus        82 ~~l~v~~ak~   91 (96)
T d1x4ga1          82 HVVKCYWGKE   91 (96)
T ss_dssp             EECEEECCCC
T ss_pred             EEEEEEEcCC
Confidence            9999999983

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.8e-15  Score=125.94  Aligned_cols=77  Identities=22%  Similarity=0.362  Sum_probs=72.0

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .++|||+|||.++|+++|+++|+.||.|.        .|+|..+. +|.++|||||+|.++++|.+||+ ++|..+.|+.
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~--------~v~l~~~~-~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~~   75 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTL-HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD   75 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEE--------EEEEEECT-TCCEEEEEEEEESCHHHHHHHHT-CCCCEETTEE
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccc--------cceeeeec-cCCcceEEEEEEcCHHHHHHHHH-HCCCEECCEE
Confidence            57999999999999999999999999998        79998886 58999999999999999999995 7999999999


Q ss_pred             EEEEEcc
Q psy2160         580 IKVERAK  586 (773)
Q Consensus       580 i~V~~a~  586 (773)
                      |.|.++.
T Consensus        76 l~v~~~~   82 (85)
T d1zh5a2          76 LLILFKD   82 (85)
T ss_dssp             CEEEEGG
T ss_pred             EEEEEcC
Confidence            9999865

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-15  Score=132.97  Aligned_cols=81  Identities=12%  Similarity=0.251  Sum_probs=71.7

Q ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ....++|||+|||+++|+++|+++|+.||.|...       +.++.+. +|+++|||||+|.+.++|.+||+ ||+..|.
T Consensus         5 ~~~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~-------~~~~~~~-~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~   75 (103)
T d2cpya1           5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENA-------VHVLVDN-NGQGLGQALVQFKNEDDARKSER-LHRKKLN   75 (103)
T ss_dssp             CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT-------EEECCCT-TSSCSSCEEEECSSHHHHHHHGG-GCSEEET
T ss_pred             CCCceEEEEeCCCCCCCHHHHhhhhcccceEEEE-------EEEEeCC-CCCcCccEEEEECCHHHHHHHHh-cCCCeEC
Confidence            3456789999999999999999999999999863       5555555 59999999999999999999997 8999999


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |++|.|..+.
T Consensus        76 gr~i~V~~~~   85 (103)
T d2cpya1          76 GREAFVHVVT   85 (103)
T ss_dssp             TEEEEEEEEC
T ss_pred             CcEEEEEECC
Confidence            9999998865

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.57  E-value=4.8e-16  Score=133.37  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=72.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .|+|+.+ .+|+++|||||+|.+.++|.+||+ |||..|+|
T Consensus        11 ~~~~~ifV~nL~~~~te~~l~~~F~~~G~i~--------~~~v~~~-~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g   80 (91)
T d1fjeb1          11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN--------DLAVVDV-RTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG   80 (91)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------TCCCCEE-EEETTTTEEEEEESSHHHHHHHHH-GGGEEETT
T ss_pred             CCCcEEEEeCccCcchHHHHHHHHhcCCcEE--------Eeeeeec-CCCCccEEeEEeeCCHHHHHHHHh-cCCcEECC
Confidence            3567999999999999999999999999998        5777654 468999999999999999999995 99999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      ++|+|.+|+
T Consensus        81 ~~i~V~~ak   89 (91)
T d1fjeb1          81 NEIKLEKPK   89 (91)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEecC
Confidence            999999987

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-15  Score=129.83  Aligned_cols=77  Identities=22%  Similarity=0.332  Sum_probs=70.4

Q ss_pred             CCCEEEEcCCCCCCCHHHH---HHHHHhcCcceeccCCCceEEEEEecCCCCCC---cceEEEEeCChHHHHHHHHHhCC
Q psy2160         499 ENTKVYVSNLPLDLTQEEF---VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF---KGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L---~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~---kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ..++|||+|||+++|+++|   .++|++||.|.        +|.|++++.++.+   +|||||+|.++++|..|++.|||
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~--------~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng   78 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH--------KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN   78 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE--------EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCce--------EEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCC
Confidence            4578999999999999999   77899999999        8999999876554   48999999999999999999999


Q ss_pred             ceecCeEEEEE
Q psy2160         573 YEIRGKKIKVE  583 (773)
Q Consensus       573 ~~i~g~~i~V~  583 (773)
                      ..|.|++|+|+
T Consensus        79 ~~~~gr~lkvS   89 (89)
T d2cpia1          79 VVVDGRTLKAS   89 (89)
T ss_dssp             EEETTEEEEEE
T ss_pred             CEECCEEEEEC
Confidence            99999999985

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=4.6e-15  Score=122.29  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||+++|+++|+++|+.||.|.        .|+|..++.+  .+|+|||+|.++++|.+|+ .||+..|+|++|
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~--------~v~~~~~~~~--~~~~afV~F~~~~~a~~Al-~~~~~~i~g~~i   69 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPII--------HVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEI   69 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEE--------EEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceE--------EEEEEeeccc--cceEEEEEEcchHHhHHHH-HhcCcEECCEEE
Confidence            5899999999999999999999999999        7999999863  4689999999999999999 589999999999


Q ss_pred             EEEEc
Q psy2160         581 KVERA  585 (773)
Q Consensus       581 ~V~~a  585 (773)
                      .|..+
T Consensus        70 ~V~~~   74 (75)
T d2ghpa2          70 IVSHL   74 (75)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99875

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.9e-15  Score=128.18  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=71.2

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|+.||.|..       .+.+..+. +|.++|+|||+|.+.++|.+|++.|||..|.|+
T Consensus         8 ~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~-------~~~~~~~~-~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr   79 (86)
T d2cqpa1           8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPG-------SVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR   79 (86)
T ss_dssp             SSEEEEEESCCTTCCHHHHHHHTTTSCCCTT-------TCEEEECS-SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhccccee-------EEEEEeCC-CCCcceEEEEEEcCcHHHHHHHHHcCCCEECCE
Confidence            4678999999999999999999999999973       25566654 599999999999999999999999999999999


Q ss_pred             EEEEEEc
Q psy2160         579 KIKVERA  585 (773)
Q Consensus       579 ~i~V~~a  585 (773)
                      +|+|.+|
T Consensus        80 ~i~v~l~   86 (86)
T d2cqpa1          80 KVKLVLG   86 (86)
T ss_dssp             ECEEEES
T ss_pred             EEEEEEC
Confidence            9999875

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.55  E-value=3.9e-15  Score=125.36  Aligned_cols=77  Identities=17%  Similarity=0.291  Sum_probs=70.2

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      .+++++|||+|||.++|+++|.++|+.||.|.        .|+++++.     +|||||+|.+.++|..|++.|||..|.
T Consensus         5 ~pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~   71 (83)
T d2b0ga1           5 QPPNQILFLTNLPEETNEMMLSMLFNQFPGFK--------EVRLVPNR-----HDIAFVEFTTELQSNAAKEALQGFKIT   71 (83)
T ss_dssp             CSCCSEEEEESCCTTCCHHHHHHHHTTSTTEE--------EEEECTTT-----CSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEECCCCCCCHHHHHhhhccCccEE--------Eeeeeccc-----ceeEEEecCCHHHHHHHHHHhCCcEeC
Confidence            34678999999999999999999999999998        79887553     789999999999999999999999985


Q ss_pred             -CeEEEEEEcc
Q psy2160         577 -GKKIKVERAK  586 (773)
Q Consensus       577 -g~~i~V~~a~  586 (773)
                       |++|+|.+|+
T Consensus        72 ~~~~i~v~~ak   82 (83)
T d2b0ga1          72 PTHAMKITFAK   82 (83)
T ss_dssp             TTCBCEEEECC
T ss_pred             CCcEEEEEEec
Confidence             6899999987

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.2e-16  Score=126.61  Aligned_cols=71  Identities=20%  Similarity=0.327  Sum_probs=68.0

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160         503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK  581 (773)
Q Consensus       503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~  581 (773)
                      |||+|||.++|+++|+++|++||.|.        .+++.+++.+|.++|+|||+|.+.++|.+|++.|||..|.|+.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~--------~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIV--------STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEE--------EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhcccc--------ccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            79999999999999999999999999        799999999999999999999999999999999999999998763

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.9e-15  Score=125.25  Aligned_cols=80  Identities=21%  Similarity=0.187  Sum_probs=70.6

Q ss_pred             CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      +-|.+++|||+|||.++|+++|+++|++||.|..        +.+..    ++.+|||||+|.+.++|..|+..|+|..|
T Consensus         6 ~~pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~~--------~~~~~----~~~~~~afV~f~~~~~A~~A~~~l~~~~i   73 (88)
T d2adca2           6 IFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--------GFKFF----QKDRKMALIQMGSVEEAVQALIDLHNHDL   73 (88)
T ss_dssp             CCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE--------EEEEC----SSSTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHhhccCCEEE--------EEEee----ecccceeEEEECCHHHHHHHHHhccCCEe
Confidence            4466789999999999999999999999999987        66654    44578999999999999999999999988


Q ss_pred             -cCeEEEEEeecc
Q psy2160         291 -RGKKIKVERAKF  302 (773)
Q Consensus       291 -~g~~I~V~~A~~  302 (773)
                       .|++|+|++|+.
T Consensus        74 ~~g~~l~v~~sk~   86 (88)
T d2adca2          74 GENHHLRVSFSKS   86 (88)
T ss_dssp             SSSCBCEEEECSS
T ss_pred             cCCCEEEEEeCCC
Confidence             589999999863

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.7e-15  Score=133.61  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=70.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+|+|||+|||+++|+++|+++|++||.|..        |.|.      ..+|||||+|.+.++|..||+.|||..|.|+
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~--------v~l~------~~kg~afV~f~~~~~A~~A~~~lng~~~~gr   74 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHV   74 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCccE--------EEee------ccCceEEEEEcCHHHHHHHHHHHcCCccCCC
Confidence            6799999999999999999999999999987        7773      4578999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|.|++|...
T Consensus        75 ~l~v~~a~~~   84 (111)
T d1whxa_          75 PLYLEWAPIG   84 (111)
T ss_dssp             BCEEEEEETT
T ss_pred             eEEEEECCCC
Confidence            9999998743

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.6e-15  Score=129.10  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ....|||+|||+++|+++|+++|+.||.|..        +.++.+..+|+++|||||+|.++++|.+|++ +|+..|+||
T Consensus        14 ~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~--------~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~gR   84 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--------GMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHR   84 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEE--------EEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSSS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCceE--------EEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcce
Confidence            5678999999999999999999999999987        4444555559999999999999999999997 899999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      .|+|..+...
T Consensus        85 ~i~V~~~~~~   94 (104)
T d1wg5a_          85 YIEIFKSSRA   94 (104)
T ss_dssp             CCEEEEECTT
T ss_pred             EEEEEECCHH
Confidence            9999988743

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.2e-15  Score=123.90  Aligned_cols=76  Identities=22%  Similarity=0.267  Sum_probs=68.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++|+++|+++|++||.|..        +.+      ++++|||||.|.+.++|..||..|||..|.|+
T Consensus         7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~--------~~~------~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~   72 (86)
T d2cpda1           7 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAV--------ERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGS   72 (86)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTSTTCE--------EEE------EECSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHhhcccceeee--------EEE------ccccEEEEEEeCCHHHHHHHHHHcCCCEECCE
Confidence            5578999999999999999999999999986        555      34578999999999999999999999999999


Q ss_pred             EEEEEeeccc
Q psy2160         294 KIKVERAKFT  303 (773)
Q Consensus       294 ~I~V~~A~~~  303 (773)
                      +|+|++|++.
T Consensus        73 ~i~V~~akP~   82 (86)
T d2cpda1          73 PIEVTLAKPV   82 (86)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEeccCC
Confidence            9999998743

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.7e-15  Score=128.51  Aligned_cols=80  Identities=21%  Similarity=0.346  Sum_probs=71.6

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCc-ceeccCCCceEEEEEecCC-CCCCcceEEEEeCChHHHHHHHHHhCC--cee
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSILDG--YEI  575 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~-I~~~~~~~~~~i~l~~d~~-tg~~kG~afV~f~~~e~A~~Ai~~lng--~~i  575 (773)
                      +++|||+|||.++|+++|+++|+.||. |.        .|+|+++.. +|+++|||||+|.++++|..|++.|++  ..+
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~--------~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~   72 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVL--------DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL   72 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEE--------EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcce--------EEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEE
Confidence            478999999999999999999999996 66        699998863 688999999999999999999999965  455


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      .|++|+|.+|+.
T Consensus        73 ~g~~i~V~~A~p   84 (96)
T d2disa1          73 WGHQIAVDWAEP   84 (96)
T ss_dssp             TTBCCEEEESCS
T ss_pred             CCEEEEEEEcCC
Confidence            799999999984

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-15  Score=132.68  Aligned_cols=80  Identities=20%  Similarity=0.385  Sum_probs=73.6

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .+.+..+. +|.++|||||+|.+.++|..||+.|||..|.|
T Consensus        16 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~~~~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~g   86 (101)
T d1x5oa1          16 QDPTNLYISNLPLSMDEQELENMLKPFGQVI--------STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT   86 (101)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhccccc--------ceeeeccc-ccccccceeEEeCCHHHHHHHHHHhCCCEECC
Confidence            3468999999999999999999999999998        78888885 58899999999999999999999999999999


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +++.|.+++
T Consensus        87 r~~~v~~~~   95 (101)
T d1x5oa1          87 PPGVSAPTE   95 (101)
T ss_dssp             CTTSCCCSS
T ss_pred             cCCccCCCC
Confidence            998887665

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=5.3e-15  Score=125.33  Aligned_cols=75  Identities=28%  Similarity=0.465  Sum_probs=70.1

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++++++|+++|++||.|.        +|++.++      +|||||+|.+.++|..|++.|||..|.|+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--------~i~~~~~------k~~afV~f~~~~~A~~A~~~l~g~~i~g~   72 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAG--------EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK   72 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCS--------EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCce--------Eeeeecc------cceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            457899999999999999999999999999        7988754      68999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|++|..
T Consensus        73 ~l~V~~A~~   81 (86)
T d2cpja1          73 QLRVRFACH   81 (86)
T ss_dssp             CCEEEESSC
T ss_pred             EEEEEECCC
Confidence            999999984

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.53  E-value=6.9e-15  Score=123.78  Aligned_cols=76  Identities=16%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec-
Q psy2160         213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-  291 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~-  291 (773)
                      |.+++|||+|||.++|+++|.++|+.||.|..        |+++++     .+|||||+|.+.++|..|++.|+|..|. 
T Consensus         6 pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~   72 (83)
T d2b0ga1           6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKE--------VRLVPN-----RHDIAFVEFTTELQSNAAKEALQGFKITP   72 (83)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTSTTEEE--------EEECTT-----TCSCEEEEESSHHHHHHHHHHHTTCBSST
T ss_pred             CCCCEEEEECCCCCCCHHHHHhhhccCccEEE--------eeeecc-----cceeEEEecCCHHHHHHHHHHhCCcEeCC
Confidence            46789999999999999999999999999998        898754     3689999999999999999999999985 


Q ss_pred             CeEEEEEeec
Q psy2160         292 GKKIKVERAK  301 (773)
Q Consensus       292 g~~I~V~~A~  301 (773)
                      |++|+|.+|+
T Consensus        73 ~~~i~v~~ak   82 (83)
T d2b0ga1          73 THAMKITFAK   82 (83)
T ss_dssp             TCBCEEEECC
T ss_pred             CcEEEEEEec
Confidence            6899999885

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.5e-15  Score=127.98  Aligned_cols=78  Identities=13%  Similarity=0.188  Sum_probs=72.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|||+|||+++|+++|+++|+.||++.         |.++++.. |.++|||||+|.+.++|.+||+ ||+..|.||
T Consensus        14 ~~~~v~v~nLp~~~te~dl~~~F~~~~~~~---------v~~~~~~~-g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR   82 (102)
T d1weza_          14 TGHCVHMRGLPYRATENDIYNFFSPLNPMR---------VHIEIGPD-GRVTGEADVEFATHEDAVAAMA-KDKANMQHR   82 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCCCSE---------EEEEESSS-SCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHhccCcce---------eeeEEecC-CcceEEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence            567899999999999999999999999664         88888887 9999999999999999999997 899999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|+|.++..
T Consensus        83 ~I~V~~s~~   91 (102)
T d1weza_          83 YVELFLNST   91 (102)
T ss_dssp             CCEEEEECC
T ss_pred             EEEEEEcCC
Confidence            999998774

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.2e-15  Score=131.45  Aligned_cols=79  Identities=16%  Similarity=0.304  Sum_probs=70.2

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|||+|||+++|+++|+++|+.||.+...       +.++.+. +|.++|||||+|.+.++|.+|++ ||+..|.|+
T Consensus        17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~-------~~~~~~~-~g~~~G~afVeF~~~e~a~~al~-~~~~~i~gR   87 (112)
T d1wela1          17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS-------IYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQYMGNR   87 (112)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTT-------CEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred             CCeEEEEecCCCcCcHHHHhhHHhhccccccc-------eeeecCc-ccceeeEEEEEECCHHHHHHHHH-cCCCcCCCE
Confidence            56789999999999999999999999999762       4444444 49999999999999999999997 899999999


Q ss_pred             EEEEEeec
Q psy2160         294 KIKVERAK  301 (773)
Q Consensus       294 ~I~V~~A~  301 (773)
                      .|.|..+.
T Consensus        88 ~i~V~~~~   95 (112)
T d1wela1          88 FIQVHPIT   95 (112)
T ss_dssp             CBEEEEEC
T ss_pred             EEEEEEcC
Confidence            99998775

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.53  E-value=7.5e-15  Score=127.18  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=70.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        ++.     +|.++|||||+|.+.++|..|++.||+..|.|+
T Consensus        15 ~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~--------~~~-----~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr   81 (96)
T d1fjca_          15 AARTLLAKNLSFNITEDELKEVFEDALEIRL--------VSQ-----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR   81 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEECC--------EEE-----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhccccee--------eee-----cCccccEEEEEeCCHHHHHHHHHHcCCCEECCE
Confidence            6789999999999999999999999998875        442     488999999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        82 ~i~V~~a~~   90 (96)
T d1fjca_          82 SVSLYYTGE   90 (96)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeCC
Confidence            999999874

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=121.33  Aligned_cols=76  Identities=21%  Similarity=0.239  Sum_probs=68.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||.|.        .+.+.      .++|||||+|.++++|..|+..|||..|.|+
T Consensus         7 ~~k~l~V~nLp~~~te~~l~~~F~~~g~i~--------~~~~~------~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~   72 (86)
T d2cpda1           7 SVKILYVRNLMLSTSEEMIEKEFNNIKPGA--------VERVK------KIRDYAFVHFSNREDAVEAMKALNGKVLDGS   72 (86)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHTTSTTC--------EEEEE------ECSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHhhcccceee--------eEEEc------cccEEEEEEeCCHHHHHHHHHHcCCCEECCE
Confidence            357899999999999999999999999997        45553      3489999999999999999999999999999


Q ss_pred             EEEEEEcccc
Q psy2160         579 KIKVERAKFT  588 (773)
Q Consensus       579 ~i~V~~a~~~  588 (773)
                      .|+|++|+..
T Consensus        73 ~i~V~~akP~   82 (86)
T d2cpda1          73 PIEVTLAKPV   82 (86)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEeccCC
Confidence            9999999843

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-14  Score=123.21  Aligned_cols=77  Identities=19%  Similarity=0.199  Sum_probs=68.7

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec-
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-  576 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~-  576 (773)
                      +++++|||+|||.++|+++|+++|++||.|.        .+.+...    .++|+|||+|.+.++|..|+..|||..|. 
T Consensus         8 pPs~tL~V~NLp~~~te~~l~~~F~~~G~v~--------~~~~~~~----~~~~~afV~f~~~~~A~~A~~~l~~~~i~~   75 (88)
T d2adca2           8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVV--------KGFKFFQ----KDRKMALIQMGSVEEAVQALIDLHNHDLGE   75 (88)
T ss_dssp             CSCSEEEEECCCTTCCHHHHHHHHHTTSCCE--------EEEEECS----SSTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHhhccCCEE--------EEEEeee----cccceeEEEECCHHHHHHHHHhccCCEecC
Confidence            3568999999999999999999999999997        5665543    35899999999999999999999999984 


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |++|+|++++
T Consensus        76 g~~l~v~~sk   85 (88)
T d2adca2          76 NHHLRVSFSK   85 (88)
T ss_dssp             SCBCEEEECS
T ss_pred             CCEEEEEeCC
Confidence            8999999987

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.4e-15  Score=122.01  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc-eecCeE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-EIRGKK  579 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~-~i~g~~  579 (773)
                      ++|||+|||.++|+++|+++|++||.|.        ++++..      ++|||||+|.++++|..|++.|||. .|.|++
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~--------~~~~~~------~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~   67 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPL--------AGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI   67 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCC--------SSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEE--------EeEEec------ccceEEEEECCHHHHHHHHHHhCCCeEECCEE
Confidence            5799999999999999999999999987        455553      3789999999999999999999996 699999


Q ss_pred             EEEEEccc
Q psy2160         580 IKVERAKF  587 (773)
Q Consensus       580 i~V~~a~~  587 (773)
                      |+|++|..
T Consensus        68 i~V~~a~~   75 (80)
T d2cqha1          68 MEVDYSVS   75 (80)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            99999984

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.6e-15  Score=129.55  Aligned_cols=75  Identities=28%  Similarity=0.418  Sum_probs=69.8

Q ss_pred             CCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         500 NTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       500 ~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      +++|||+|||+ .+|+++|+++|+.||.|.        .|+|+++.     +|||||+|.++++|.+|++.|||..|.|+
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~--------~v~i~~~~-----kg~afV~f~~~~~A~~ai~~lng~~l~g~   68 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK   68 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEE--------EEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccc--------eEEEEecc-----cceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            68999999965 599999999999999999        79998774     78999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      .|+|.+++.
T Consensus        69 ~l~v~~s~~   77 (109)
T d2adca1          69 PIRITLSKH   77 (109)
T ss_dssp             BCEEECCSC
T ss_pred             EEEEEECCC
Confidence            999999874

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.5e-15  Score=128.81  Aligned_cols=80  Identities=25%  Similarity=0.409  Sum_probs=70.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecC-CCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~-~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      ..++|||+|||+++|+++|+++|+.||++ .        ++++++. .+|+++|||||+|.+.++|.+|++ ||+..|.|
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g~~-~--------~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~-~~~~~~~g   83 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLNIS-A--------VRLPREPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLGN   83 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSCEE-E--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHHG-GGTCEETT
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhccc-c--------ceeeeeeccCCCcceeeeEEECCHHHHHHHHH-cCCCEECC
Confidence            45899999999999999999999999954 4        7777765 468999999999999999987775 99999999


Q ss_pred             eEEEEEeeccc
Q psy2160         293 KKIKVERAKFT  303 (773)
Q Consensus       293 ~~I~V~~A~~~  303 (773)
                      ++|+|.+|...
T Consensus        84 r~l~V~~a~~~   94 (104)
T d1wi8a_          84 KRIRVDVADQA   94 (104)
T ss_dssp             EECEEEECCCC
T ss_pred             EEEEEEECCCC
Confidence            99999998743

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1e-14  Score=123.58  Aligned_cols=75  Identities=28%  Similarity=0.463  Sum_probs=69.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ..++|||+|||.++++++|+++|++||.|.+        |++.++      +|||||+|.+.++|..|++.|||..|.|+
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------i~~~~~------k~~afV~f~~~~~A~~A~~~l~g~~i~g~   72 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK   72 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceE--------eeeecc------cceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            4578999999999999999999999999998        998754      57999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|..
T Consensus        73 ~l~V~~A~~   81 (86)
T d2cpja1          73 QLRVRFACH   81 (86)
T ss_dssp             CCEEEESSC
T ss_pred             EEEEEECCC
Confidence            999999873

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.3e-15  Score=123.55  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-eecCeE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-EIRGKK  294 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~-~l~g~~  294 (773)
                      ++|||+|||.++|+++|+++|++||.|..        +++.+      .+|||||+|.+.++|..|++.|||. .|.|++
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~--------~~~~~------~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~   67 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLA--------GQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI   67 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCS--------SCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEE--------eEEec------ccceEEEEECCHHHHHHHHHHhCCCeEECCEE
Confidence            57999999999999999999999999987        55543      4689999999999999999999996 699999


Q ss_pred             EEEEeecc
Q psy2160         295 IKVERAKF  302 (773)
Q Consensus       295 I~V~~A~~  302 (773)
                      |+|++|..
T Consensus        68 i~V~~a~~   75 (80)
T d2cqha1          68 MEVDYSVS   75 (80)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCC
Confidence            99999874

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=127.85  Aligned_cols=79  Identities=11%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||+++|+++|+++|+.||.|..       .+.++ ...+|.++|+|||+|.++++|.+||+ |||..|.|+
T Consensus         7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~-------~~~~~-~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~gr   77 (103)
T d2cpya1           7 AKVCAHITNIPFSITKMDVLQFLEGIPVDEN-------AVHVL-VDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNGR   77 (103)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCST-------TEEEC-CCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEETTE
T ss_pred             CceEEEEeCCCCCCCHHHHhhhhcccceEEE-------EEEEE-eCCCCCcCccEEEEECCHHHHHHHHh-cCCCeECCc
Confidence            4578999999999999999999999999872       24444 44569999999999999999999995 999999999


Q ss_pred             EEEEEEcc
Q psy2160         579 KIKVERAK  586 (773)
Q Consensus       579 ~i~V~~a~  586 (773)
                      .|.|.++.
T Consensus        78 ~i~V~~~~   85 (103)
T d2cpya1          78 EAFVHVVT   85 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEECC
Confidence            99999886

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.4e-14  Score=123.19  Aligned_cols=74  Identities=24%  Similarity=0.363  Sum_probs=66.1

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||+++|+++|+++|++||...         +.+      +.++|||||+|.+.++|..||+.||+..|.|+
T Consensus         4 ~s~~i~V~nLp~~~t~~~l~~lF~~~G~~~---------~~~------~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~   68 (88)
T d1wg1a_           4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKY---------CYV------DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK   68 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSSCCCC---------EEE------EGGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCccChHHHHHHHHhcCcee---------eee------eccCCceEEEECCHHHHHHHHHHhCCCEECCE
Confidence            568999999999999999999999999432         343      45688999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|+++..
T Consensus        69 ~l~V~~a~~   77 (88)
T d1wg1a_          69 DLIVQLQPT   77 (88)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999863

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=9.3e-15  Score=130.07  Aligned_cols=76  Identities=17%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||+++|+++|+++|+.||.|.        .|.|.      .++|||||+|.+.++|.+||+.|||..|.|+
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~--------~v~l~------~~kg~afV~f~~~~~A~~A~~~lng~~~~gr   74 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG--------RVLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHV   74 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCcc--------EEEee------ccCceEEEEEcCHHHHHHHHHHHcCCccCCC
Confidence            468999999999999999999999999998        67763      2479999999999999999999999999999


Q ss_pred             EEEEEEcccc
Q psy2160         579 KIKVERAKFT  588 (773)
Q Consensus       579 ~i~V~~a~~~  588 (773)
                      +|.|++|...
T Consensus        75 ~l~v~~a~~~   84 (111)
T d1whxa_          75 PLYLEWAPIG   84 (111)
T ss_dssp             BCEEEEEETT
T ss_pred             eEEEEECCCC
Confidence            9999999743

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9e-15  Score=125.33  Aligned_cols=77  Identities=21%  Similarity=0.460  Sum_probs=69.7

Q ss_pred             CCCEEEEcCCCCCCCHHHHHH----HHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVE----VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~----~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ++++|||+|||+++|+++|++    +|++||.|.        +|++...   +.++|||||+|.+.++|..|++.|||..
T Consensus         2 P~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~--------~i~~~~~---~~~~g~afV~F~~~~~A~~A~~~~~~~~   70 (91)
T d1nu4a_           2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL--------DILVSRS---LKMRGQAFVIFKEVSSATNALRSMQGFP   70 (91)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE--------EEECCHH---HHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccccccc--------ceEEeee---ccCCCceEEEECCHHHHHHHHHHhCCCE
Confidence            468999999999999998864    689999998        6777543   6689999999999999999999999999


Q ss_pred             ecCeEEEEEEcc
Q psy2160         575 IRGKKIKVERAK  586 (773)
Q Consensus       575 i~g~~i~V~~a~  586 (773)
                      +.|+.|+|.+|+
T Consensus        71 ~~g~~l~v~~ak   82 (91)
T d1nu4a_          71 FYDKPMRIQYAK   82 (91)
T ss_dssp             ETTEECEEEECS
T ss_pred             ECCEEEEEEEeC
Confidence            999999999998

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=120.13  Aligned_cols=74  Identities=23%  Similarity=0.348  Sum_probs=67.8

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ..+++|||+|||  +|+++|+++|++||.|.        +|++.++      +|||||+|.+.++|..|+..|||..|.|
T Consensus         3 ~~~~ti~V~~~~--~te~~L~~~F~~~G~I~--------~v~~~~~------~~~afV~f~~~~~A~~Ai~~lng~~~~g   66 (79)
T d2bz2a1           3 RKGNTLYVYGED--MTPTLLRGAFSPFGNII--------DLSMDPP------RNCAFVTYEKMESADQAVAELNGTQVES   66 (79)
T ss_dssp             CCCCEEEEECSS--CCHHHHHHHHSTTCCCS--------CEEEETT------TTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred             CCCCEEEEECCC--CCHHHHHHHHhccCccc--------eeeeccC------CCEEEEEEcccHHHHHHHHHhCCCEECC
Confidence            357899999996  89999999999999998        7888643      7899999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|++|+.
T Consensus        67 ~~l~V~~a~~   76 (79)
T d2bz2a1          67 VQLKVNIARK   76 (79)
T ss_dssp             CBCEEEECCS
T ss_pred             EEEEEEEecC
Confidence            9999999973

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.1e-15  Score=126.01  Aligned_cols=77  Identities=19%  Similarity=0.445  Sum_probs=69.7

Q ss_pred             ccEEEEcCCCCCCCHHHHHH----HHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160         215 STKVYVSNLPLDLTQEEFVE----VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI  290 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~----~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l  290 (773)
                      +++|||+|||.++|+++|++    +|++||.|..        |++.+   +|.++|||||+|.+.++|..|++.|||..|
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~--------i~~~~---~~~~~g~afV~F~~~~~A~~A~~~~~~~~~   71 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF   71 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccc--------eEEee---eccCCCceEEEECCHHHHHHHHHHhCCCEE
Confidence            68999999999999999864    6899999987        77754   378899999999999999999999999999


Q ss_pred             cCeEEEEEeecc
Q psy2160         291 RGKKIKVERAKF  302 (773)
Q Consensus       291 ~g~~I~V~~A~~  302 (773)
                      .|++|+|.+|+.
T Consensus        72 ~g~~l~v~~ak~   83 (91)
T d1nu4a_          72 YDKPMRIQYAKT   83 (91)
T ss_dssp             TTEECEEEECSS
T ss_pred             CCEEEEEEEeCC
Confidence            999999999873

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=129.07  Aligned_cols=75  Identities=27%  Similarity=0.406  Sum_probs=69.4

Q ss_pred             ccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         215 STKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       215 ~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      +++|||+|||+ .+|+++|+++|++||.|..        |+|++++     +|||||+|.+.++|..||+.|||..|.|+
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~--------v~i~~~~-----kg~afV~f~~~~~A~~ai~~lng~~l~g~   68 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK   68 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccce--------EEEEecc-----cceEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            68999999965 5999999999999999998        9998764     68999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+++.
T Consensus        69 ~l~v~~s~~   77 (109)
T d2adca1          69 PIRITLSKH   77 (109)
T ss_dssp             BCEEECCSC
T ss_pred             EEEEEECCC
Confidence            999999863

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.7e-14  Score=118.77  Aligned_cols=69  Identities=20%  Similarity=0.410  Sum_probs=62.7

Q ss_pred             EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEEE
Q psy2160         218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  297 (773)
Q Consensus       218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~V  297 (773)
                      |||+|||+++|+++|+++|++||.+.         +++      ++++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g~~~---------~~~------~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V   65 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYELKY---------CFV------DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSV   65 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSCEEE---------EEE------ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhcccccc---------eee------cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEE
Confidence            79999999999999999999999432         343      566899999999999999999999999999999999


Q ss_pred             Eeec
Q psy2160         298 ERAK  301 (773)
Q Consensus       298 ~~A~  301 (773)
                      ++|.
T Consensus        66 ~~a~   69 (75)
T d1wi6a1          66 QLQP   69 (75)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9986

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=127.06  Aligned_cols=79  Identities=24%  Similarity=0.390  Sum_probs=70.3

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecC-CCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~-~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      +.++|||+|||.++|+++|+++|+.||.+         .++++.+. .+|+++|||||+|.+.++|++|+ .||+..|.|
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g~~---------~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~g   83 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLNIS---------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN   83 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSCEE---------EEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhccc---------cceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECC
Confidence            46899999999999999999999999955         47777665 46889999999999999998777 699999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.+|..
T Consensus        84 r~l~V~~a~~   93 (104)
T d1wi8a_          84 KRIRVDVADQ   93 (104)
T ss_dssp             EECEEEECCC
T ss_pred             EEEEEEECCC
Confidence            9999999874

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-14  Score=121.95  Aligned_cols=74  Identities=23%  Similarity=0.357  Sum_probs=66.0

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|++||...         +.+      +.++|||||+|.+.++|..||+.|||..|.|+
T Consensus         4 ~s~~i~V~nLp~~~t~~~l~~lF~~~G~~~---------~~~------~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~   68 (88)
T d1wg1a_           4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKY---------CYV------DRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK   68 (88)
T ss_dssp             CCCCEEEESCCSSCCHHHHHHHTCSSCCCC---------EEE------EGGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred             CCCEEEEeCCCCccChHHHHHHHHhcCcee---------eee------eccCCceEEEECCHHHHHHHHHHhCCCEECCE
Confidence            467899999999999999999999999433         444      23589999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      +|+|++++.
T Consensus        69 ~l~V~~a~~   77 (88)
T d1wg1a_          69 DLIVQLQPT   77 (88)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999999973

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.3e-14  Score=118.35  Aligned_cols=73  Identities=23%  Similarity=0.332  Sum_probs=67.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||  +|+++|+++|++||.|..        |++.+      .+|||||+|.+.++|..|+..|||..|.|+
T Consensus         4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~--------v~~~~------~~~~afV~f~~~~~A~~Ai~~lng~~~~g~   67 (79)
T d2bz2a1           4 KGNTLYVYGED--MTPTLLRGAFSPFGNIID--------LSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESV   67 (79)
T ss_dssp             CCCEEEEECSS--CCHHHHHHHHSTTCCCSC--------EEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred             CCCEEEEECCC--CCHHHHHHHHhccCccce--------eeecc------CCCEEEEEEcccHHHHHHHHHhCCCEECCE
Confidence            67899999996  999999999999999998        88864      357999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|++|+.
T Consensus        68 ~l~V~~a~~   76 (79)
T d2bz2a1          68 QLKVNIARK   76 (79)
T ss_dssp             BCEEEECCS
T ss_pred             EEEEEEecC
Confidence            999999873

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-14  Score=124.07  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=67.1

Q ss_pred             CccEEEEcCCC-CCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLP-LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP-~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g  292 (773)
                      .+++|||+||| ..+++++|+++|++||.|..        |+|        ++|||||+|.+.++|..||+.|||..|.|
T Consensus        14 ~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~--------~~i--------~rg~aFV~f~~~~~A~~Ai~~lng~~~~g   77 (98)
T d1wf2a_          14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVG--------CSV--------HKGFAFVQYVNERNARAAVAGEDGRMIAG   77 (98)
T ss_dssp             CCCCEEEEEECTTTCCHHHHHHSSTTSSCEEE--------EEE--------ETEEEEEEESSHHHHHHHHHTTTTCEETT
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHhhcCCEEE--------EEE--------eCCeEEEEECCHHHHHHHHHHcCCCEECC
Confidence            66889999997 57889999999999999998        888        36899999999999999999999999999


Q ss_pred             eEEEEEeecc
Q psy2160         293 KKIKVERAKF  302 (773)
Q Consensus       293 ~~I~V~~A~~  302 (773)
                      ++|+|.+|..
T Consensus        78 ~~l~V~~a~~   87 (98)
T d1wf2a_          78 QVLDINLAAE   87 (98)
T ss_dssp             EECEEEETTS
T ss_pred             EEEEEEECCC
Confidence            9999999863

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.5e-14  Score=124.77  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ....+|||+|||+++|+++|+++|+.||.|.        .+.++.+..++.++|+|||+|.++++|++|++ +|+..|+|
T Consensus        13 ~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~--------~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~g   83 (104)
T d1wg5a_          13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP--------NGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGH   83 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEE--------EEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCce--------EEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcc
Confidence            3456899999999999999999999999988        44555555679999999999999999999995 99999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|.|.++..
T Consensus        84 R~i~V~~~~~   93 (104)
T d1wg5a_          84 RYIEIFKSSR   93 (104)
T ss_dssp             SCCEEEEECT
T ss_pred             eEEEEEECCH
Confidence            9999999874

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-14  Score=127.10  Aligned_cols=79  Identities=13%  Similarity=0.186  Sum_probs=72.0

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ....+|||+|||+++|+++|+++|+.||++.         |.++.+.. |.++|||||+|.+.++|++|++ ||+..|.|
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~~~~---------v~~~~~~~-g~~~G~afVeF~~~~~a~~Al~-~~~~~i~g   81 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMR---------VHIEIGPD-GRVTGEADVEFATHEDAVAAMA-KDKANMQH   81 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCCCSE---------EEEEESSS-SCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhccCcce---------eeeEEecC-CcceEEEEEEECCHHHHHHHHH-cCCCEECC
Confidence            4567999999999999999999999999764         88888875 8899999999999999999995 89999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      +.|+|.++..
T Consensus        82 R~I~V~~s~~   91 (102)
T d1weza_          82 RYVELFLNST   91 (102)
T ss_dssp             SCCEEEEECC
T ss_pred             EEEEEEEcCC
Confidence            9999999873

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8e-15  Score=124.55  Aligned_cols=72  Identities=24%  Similarity=0.414  Sum_probs=66.0

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      .+|||+|||+++|+++|+++|++||.|..        ++|+++       |||||+|.+.++|..||+.|||..|.|+.|
T Consensus         1 nrvfV~nlp~~~~~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i   65 (87)
T d3begb1           1 NRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG   65 (87)
T ss_dssp             CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred             CeEEEECCCCcCCHHHHHHHHhhhccccc--------cccccc-------ceeeEEeCCHHHHHHHHHHhCCCEECCcEe
Confidence            36999999999999999999999999998        887643       799999999999999999999999999999


Q ss_pred             EEEeecc
Q psy2160         296 KVERAKF  302 (773)
Q Consensus       296 ~V~~A~~  302 (773)
                      +|.++..
T Consensus        66 ~v~~~~~   72 (87)
T d3begb1          66 ETAYIRV   72 (87)
T ss_dssp             CCCBCEE
T ss_pred             EEeEEec
Confidence            9987664

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.47  E-value=2.2e-14  Score=124.19  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|+.||.|.        .++.     +|.++|||||+|.+.++|..|+..|||..|.|
T Consensus        14 ~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~--------~~~~-----~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g   80 (96)
T d1fjca_          14 RAARTLLAKNLSFNITEDELKEVFEDALEIR--------LVSQ-----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG   80 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC--------CEEE-----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcccce--------eeee-----cCccccEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence            3468999999999999999999999999987        3432     37789999999999999999999999999999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|+|.+|..
T Consensus        81 r~i~V~~a~~   90 (96)
T d1fjca_          81 RSVSLYYTGE   90 (96)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeCC
Confidence            9999999983

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-14  Score=122.09  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=67.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |++.     +.++|||||+|.+.++|+.||.  ++..|.|+
T Consensus         4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~~~-----~~~~gfafV~f~~~~~a~~a~~--~~~~i~g~   68 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIP-----KPFRAFAFVTFADDQIAQSLCG--EDLIIKGI   68 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECC-----SSCCSCCEEECSCHHHHHHTTT--CEEEETTE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCceE--------EEEe-----eccCceEEEEECCHHHHHHHHh--CCCEECCE
Confidence            5799999999999999999999999999997        7664     4568999999999999999985  78899999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      +|+|.+|..
T Consensus        69 ~l~v~~a~~   77 (88)
T d1wf0a_          69 SVHISNAEP   77 (88)
T ss_dssp             EEEEECCCC
T ss_pred             EeEEEeCCC
Confidence            999998864

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.5e-14  Score=115.70  Aligned_cols=69  Identities=20%  Similarity=0.410  Sum_probs=62.8

Q ss_pred             EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160         503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV  582 (773)
Q Consensus       503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V  582 (773)
                      |||+|||+++|+++|+++|++||.+.         +++      ++++|+|||+|.+.++|.+|++.|||..+.|++|+|
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g~~~---------~~~------~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V   65 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYELKY---------CFV------DKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSV   65 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSCEEE---------EEE------ETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhcccccc---------eee------cccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEE
Confidence            79999999999999999999999443         443      345899999999999999999999999999999999


Q ss_pred             EEcc
Q psy2160         583 ERAK  586 (773)
Q Consensus       583 ~~a~  586 (773)
                      ++|+
T Consensus        66 ~~a~   69 (75)
T d1wi6a1          66 QLQP   69 (75)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9997

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-14  Score=123.40  Aligned_cols=72  Identities=22%  Similarity=0.394  Sum_probs=66.1

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||+++|+++|+++|+.||.|.        .|+|+.       .|||||+|.+.++|..||..|||..|.|+.|
T Consensus         1 nrvfV~nlp~~~~~~~l~~~F~~~G~v~--------~~~i~~-------~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i   65 (87)
T d3begb1           1 NRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYR-------DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEG   65 (87)
T ss_dssp             CCEEEEECCSSCCTTHHHHHHGGGSCEE--------EEEECT-------TSEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred             CeEEEECCCCcCCHHHHHHHHhhhcccc--------cccccc-------cceeeEEeCCHHHHHHHHHHhCCCEECCcEe
Confidence            4699999999999999999999999998        688763       4799999999999999999999999999999


Q ss_pred             EEEEccc
Q psy2160         581 KVERAKF  587 (773)
Q Consensus       581 ~V~~a~~  587 (773)
                      .|.++..
T Consensus        66 ~v~~~~~   72 (87)
T d3begb1          66 ETAYIRV   72 (87)
T ss_dssp             CCCBCEE
T ss_pred             EEeEEec
Confidence            9988763

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-14  Score=124.18  Aligned_cols=77  Identities=26%  Similarity=0.320  Sum_probs=70.5

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee--c
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI--R  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l--~  291 (773)
                      ...+|||+|||.++|+++|+++|++||.|..        |+|.+++    .+|+|||+|.+.++|..||..|||..|  +
T Consensus         6 ~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~--------~~i~~~~----~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~   73 (108)
T d2adba1           6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNA   73 (108)
T ss_dssp             CEEEEESCSCCSTTHHHHHHHHHTTTSCEEE--------EEEEEET----TEEEEEEEESCHHHHHHHHHHHHSCCSSTT
T ss_pred             CeEEEEEeCcCCCCCHHHHHHHHccCCcEEE--------EEEEeeC----CCCeEEEEECCHHHHHHHHHHHCCCEeccC
Confidence            5688999999999999999999999999998        8998764    489999999999999999999999998  5


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|.+++.
T Consensus        74 ~~~l~v~~s~~   84 (108)
T d2adba1          74 CCTLRIDFSKL   84 (108)
T ss_dssp             CCCCEEEECSS
T ss_pred             CcEEEEEecCC
Confidence            78999988764

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-14  Score=122.90  Aligned_cols=74  Identities=23%  Similarity=0.389  Sum_probs=67.2

Q ss_pred             CCCCEEEEcCCC-CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         498 QENTKVYVSNLP-LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       498 ~~~~~l~V~nLp-~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ..+++|||+||| ..+++++|+++|++||.|.        +|+|.        +|||||+|.+.++|.+||+.|||..|.
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~--------~~~i~--------rg~aFV~f~~~~~A~~Ai~~lng~~~~   76 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIV--------GCSVH--------KGFAFVQYVNERNARAAVAGEDGRMIA   76 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEE--------EEEEE--------TEEEEEEESSHHHHHHHHHTTTTCEET
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEE--------EEEEe--------CCeEEEEECCHHHHHHHHHHcCCCEEC
Confidence            356789999997 5688899999999999999        78873        789999999999999999999999999


Q ss_pred             CeEEEEEEccc
Q psy2160         577 GKKIKVERAKF  587 (773)
Q Consensus       577 g~~i~V~~a~~  587 (773)
                      |++|+|.+|..
T Consensus        77 g~~l~V~~a~~   87 (98)
T d1wf2a_          77 GQVLDINLAAE   87 (98)
T ss_dssp             TEECEEEETTS
T ss_pred             CEEEEEEECCC
Confidence            99999999973

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=9.1e-14  Score=120.41  Aligned_cols=76  Identities=17%  Similarity=0.320  Sum_probs=69.3

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      .+.++|||+|||+++|+++|+++|++||.|.        .|++.++      ++||||+|.+.++|..|++.|||..|.|
T Consensus        15 ~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~--------~~~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~i~g   80 (97)
T d1whya_          15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR--------TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG   80 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhhcccc--------eEeeecc------ccEEEeccCCHHHHHHHHHHhCCCEeCC
Confidence            4568999999999999999999999999998        7888754      6899999999999999999999999986


Q ss_pred             --eEEEEEEccc
Q psy2160         578 --KKIKVERAKF  587 (773)
Q Consensus       578 --~~i~V~~a~~  587 (773)
                        ++|+|.+|+.
T Consensus        81 ~~~~l~v~~ak~   92 (97)
T d1whya_          81 PDRRLRVDFAKS   92 (97)
T ss_dssp             SSCBCEEEECCC
T ss_pred             CceEEEEEeCCC
Confidence              5899999983

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.2e-14  Score=125.16  Aligned_cols=78  Identities=26%  Similarity=0.311  Sum_probs=70.9

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee--
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI--  575 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i--  575 (773)
                      .+..+|||+|||..+|+++|+++|++||.|.        +|.|+.+.    ++|+|||+|.++++|..|+..|||..|  
T Consensus         5 s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~--------~~~i~~~~----~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~   72 (108)
T d2adba1           5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN   72 (108)
T ss_dssp             CCEEEEESCSCCSTTHHHHHHHHHTTTSCEE--------EEEEEEET----TEEEEEEEESCHHHHHHHHHHHHSCCSST
T ss_pred             CCeEEEEEeCcCCCCCHHHHHHHHccCCcEE--------EEEEEeeC----CCCeEEEEECCHHHHHHHHHHHCCCEecc
Confidence            3567899999999999999999999999998        79998775    489999999999999999999999998  


Q ss_pred             cCeEEEEEEccc
Q psy2160         576 RGKKIKVERAKF  587 (773)
Q Consensus       576 ~g~~i~V~~a~~  587 (773)
                      +|++|+|.+++.
T Consensus        73 ~~~~l~v~~s~~   84 (108)
T d2adba1          73 ACCTLRIDFSKL   84 (108)
T ss_dssp             TCCCCEEEECSS
T ss_pred             CCcEEEEEecCC
Confidence            478999998874

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=116.89  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=69.4

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh--CCce
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYE  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l--ng~~  574 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        +|++..+      +|+|||+|.+.++|..|+..+  ++..
T Consensus         5 ~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~~~~~------~~~afV~f~~~e~A~~a~~~~~~~~~~   70 (88)
T d2cq1a1           5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVT--------NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH   70 (88)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhcccccc--------ccccccc------ceEEEEEeCCHHHHHHHHHHHccCCCc
Confidence            45789999999999999999999999999998        7888744      689999999999999999865  6788


Q ss_pred             ecCeEEEEEEccc
Q psy2160         575 IRGKKIKVERAKF  587 (773)
Q Consensus       575 i~g~~i~V~~a~~  587 (773)
                      +.|++|+|.+++.
T Consensus        71 ~~g~~l~v~~sk~   83 (88)
T d2cq1a1          71 LRNQPIYIQYSNH   83 (88)
T ss_dssp             ETTEECEEEECSC
T ss_pred             cCCCEEEEEECCC
Confidence            9999999999973

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.9e-14  Score=119.36  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=67.1

Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160         498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG  577 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g  577 (773)
                      ...++|||+|||.++|+++|+++|++||.|.        +|++..     .++|||||+|.+.++|+.|+.  ++..|.|
T Consensus         3 ~~s~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~~~~-----~~~gfafV~f~~~~~a~~a~~--~~~~i~g   67 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVM--------DVFIPK-----PFRAFAFVTFADDQIAQSLCG--EDLIIKG   67 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCC--------EEECCS-----SCCSCCEEECSCHHHHHHTTT--CEEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCce--------EEEEee-----ccCceEEEEECCHHHHHHHHh--CCCEECC
Confidence            3578999999999999999999999999998        677653     358999999999999999984  8899999


Q ss_pred             eEEEEEEccc
Q psy2160         578 KKIKVERAKF  587 (773)
Q Consensus       578 ~~i~V~~a~~  587 (773)
                      ++|.|.+|..
T Consensus        68 ~~l~v~~a~~   77 (88)
T d1wf0a_          68 ISVHISNAEP   77 (88)
T ss_dssp             EEEEEECCCC
T ss_pred             EEeEEEeCCC
Confidence            9999999974

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.6e-14  Score=126.43  Aligned_cols=81  Identities=14%  Similarity=0.217  Sum_probs=70.9

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  576 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~  576 (773)
                      ....++|||+|||+++|+++|+++|+.||.+.        .+.++.+..+|.++|+|||+|.+.++|++|+. |||..|+
T Consensus        15 ~~~~~~i~v~nLp~~~t~~di~~~F~~~g~~~--------~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~i~   85 (112)
T d1wela1          15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVE--------DSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG   85 (112)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCT--------TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred             CCCCeEEEEecCCCcCcHHHHhhHHhhccccc--------cceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCcCC
Confidence            34567999999999999999999999999987        33344444469999999999999999999995 9999999


Q ss_pred             CeEEEEEEcc
Q psy2160         577 GKKIKVERAK  586 (773)
Q Consensus       577 g~~i~V~~a~  586 (773)
                      |+.|.|..+.
T Consensus        86 gR~i~V~~~~   95 (112)
T d1wela1          86 NRFIQVHPIT   95 (112)
T ss_dssp             TSCBEEEEEC
T ss_pred             CEEEEEEEcC
Confidence            9999999887

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.3e-13  Score=119.49  Aligned_cols=74  Identities=23%  Similarity=0.362  Sum_probs=68.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      ...+|||+|||+++++++|.++|+.||.|..        +.|.+       +|||||+|.+.++|..||+.||+..|.|+
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~--------~~i~~-------~g~afV~f~~~~~a~~Ai~~lng~~~~g~   78 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCY--------ADVQK-------DGMGMVEYLRKEDMEYALRKLDDTKFRSH   78 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEEE--------EEEET-------TTEEEEEESSHHHHHHHHHHHSSEEEECT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhccccc--------ccccc-------cceEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence            5678999999999999999999999999988        88753       47999999999999999999999999999


Q ss_pred             EEEEEeecc
Q psy2160         294 KIKVERAKF  302 (773)
Q Consensus       294 ~I~V~~A~~  302 (773)
                      .|+|.+++.
T Consensus        79 ~i~v~~~~~   87 (98)
T d1wg4a_          79 EGETSYIRV   87 (98)
T ss_dssp             TSCEEEEEE
T ss_pred             EEEEEEEec
Confidence            999998874

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.1e-15  Score=126.16  Aligned_cols=82  Identities=17%  Similarity=0.274  Sum_probs=68.0

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  295 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I  295 (773)
                      ++|||+|||.++|+++|+++|+.||.|.......   .....+..+++++|||||+|.+.++|..|++ |||..|.|++|
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~---~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~~Gr~l   77 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP---GNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSL   77 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSS---SCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCSSSSCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEec---cceeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEECCEEE
Confidence            6899999999999999999999999987621111   1123345568999999999999999999996 99999999999


Q ss_pred             EEEeec
Q psy2160         296 KVERAK  301 (773)
Q Consensus       296 ~V~~A~  301 (773)
                      +|.+++
T Consensus        78 ~V~r~k   83 (90)
T d1u2fa_          78 KIRRPH   83 (90)
T ss_dssp             CCBCTT
T ss_pred             EECCCC
Confidence            997654

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.5e-13  Score=119.12  Aligned_cols=74  Identities=23%  Similarity=0.354  Sum_probs=68.3

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  578 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~  578 (773)
                      ..++|||+|||.++|+++|+++|+.||.|.        .|+|.       ++|||||+|.+.++|..||+.|||..|.|+
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~--------~~~i~-------~~g~afV~f~~~~~a~~Ai~~lng~~~~g~   78 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVC--------YADVQ-------KDGMGMVEYLRKEDMEYALRKLDDTKFRSH   78 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHHHTTSSCEE--------EEEEE-------TTTEEEEEESSHHHHHHHHHHHSSEEEECT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhhcccc--------ccccc-------ccceEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence            467899999999999999999999999998        68875       258999999999999999999999999999


Q ss_pred             EEEEEEccc
Q psy2160         579 KIKVERAKF  587 (773)
Q Consensus       579 ~i~V~~a~~  587 (773)
                      .|+|.+++.
T Consensus        79 ~i~v~~~~~   87 (98)
T d1wg4a_          79 EGETSYIRV   87 (98)
T ss_dssp             TSCEEEEEE
T ss_pred             EEEEEEEec
Confidence            999999874

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.3e-13  Score=118.28  Aligned_cols=74  Identities=16%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH--HcCCcee
Q psy2160         214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS--ILDGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~--~lng~~l  290 (773)
                      .+++|||+|||.+ +|+++|.++|++||.|..        |++.++      +|+|||+|.+.++|..|++  .+++..|
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~--------v~~~~~------k~~afV~f~~~~~A~~Ai~~~~~~~~~~   82 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMRM------KSQAFIEMETREDAMAMVDHCLKKALWF   82 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeE--------EEEeec------CCcEEEEecchHHHHHHHHHHhcCCceE
Confidence            6789999999986 899999999999999998        888754      5799999999999999997  4788899


Q ss_pred             cCeEEEEEeec
Q psy2160         291 RGKKIKVERAK  301 (773)
Q Consensus       291 ~g~~I~V~~A~  301 (773)
                      .|++|+|.+|+
T Consensus        83 ~gr~l~V~~s~   93 (99)
T d1x4fa1          83 QGRCVKVDLSE   93 (99)
T ss_dssp             SSSCCEEEEEC
T ss_pred             CCEEEEEEEcC
Confidence            99999999886

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.3e-13  Score=117.79  Aligned_cols=74  Identities=18%  Similarity=0.342  Sum_probs=68.0

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      ..++|||+|||+++|+++|+++|++||.|..        |+++++      +|||||+|.+.++|..|++.||+..|.| 
T Consensus        16 Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~--------~~~~~~------~~~afV~f~~~~~A~~A~~~l~~~~i~g~   81 (97)
T d1whya_          16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGP   81 (97)
T ss_dssp             CCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhhcccce--------Eeeecc------ccEEEeccCCHHHHHHHHHHhCCCEeCCC
Confidence            5689999999999999999999999999998        888754      5799999999999999999999999976 


Q ss_pred             -eEEEEEeec
Q psy2160         293 -KKIKVERAK  301 (773)
Q Consensus       293 -~~I~V~~A~  301 (773)
                       ++|+|.+|+
T Consensus        82 ~~~l~v~~ak   91 (97)
T d1whya_          82 DRRLRVDFAK   91 (97)
T ss_dssp             SCBCEEEECC
T ss_pred             ceEEEEEeCC
Confidence             689999987

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=6.2e-13  Score=116.63  Aligned_cols=77  Identities=17%  Similarity=0.191  Sum_probs=68.8

Q ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh--CCce
Q psy2160         497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYE  574 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l--ng~~  574 (773)
                      ..+.++|||+|||.++|+++|+++|++||.|.        .|.+.++      +|+|||+|.+.++|..|+..|  ++..
T Consensus        12 ~~ps~~l~v~nlp~~~te~~l~~~F~~fG~I~--------~~~~~~~------k~~AfV~f~~~e~A~~ai~~~~~~~~~   77 (104)
T d1wexa_          12 VSVSPVVHVRGLCESVVEADLVEALEKFGTIC--------YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY   77 (104)
T ss_dssp             CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHhhhhcccce--------EEEEEec------ceeEEEEeCCHHHHHHHHHHHcCCCcE
Confidence            34678999999999999999999999999998        7888643      789999999999999999988  5667


Q ss_pred             ecCeEEEEEEccc
Q psy2160         575 IRGKKIKVERAKF  587 (773)
Q Consensus       575 i~g~~i~V~~a~~  587 (773)
                      ++|++|+|++++.
T Consensus        78 ~~g~~l~v~~s~~   90 (104)
T d1wexa_          78 IAGQQAFFNYSTS   90 (104)
T ss_dssp             SSSSBCEEEECSS
T ss_pred             EeeEEEEEEEcCC
Confidence            8899999999974

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.4e-13  Score=115.71  Aligned_cols=86  Identities=24%  Similarity=0.295  Sum_probs=77.0

Q ss_pred             CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC------CCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160         348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK------HPEGVAQIFFKEPEAADACRELLNGR  421 (773)
Q Consensus       348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~------~~~G~afV~F~~~e~A~~Ai~~lng~  421 (773)
                      .+++|+|.||+++.++.+ +....++.+||+++|++||.|.+|.|+..      +..|++||+|.+.++|.+|+..|||+
T Consensus         3 Ps~vl~l~N~~~~~~l~~-~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr   81 (104)
T d1o0pa_           3 PTEVLCLMNMVLPEELLD-DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR   81 (104)
T ss_dssp             CCSEEEEESSCCTTTTTS-HHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSC
T ss_pred             CCcEEEEeCCCCHHHcCC-chhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCC
Confidence            378999999999999864 56678899999999999999999998642      34589999999999999999999999


Q ss_pred             ccCCeeEEEEecC
Q psy2160         422 WFGQRQITAETWD  434 (773)
Q Consensus       422 ~~~Gr~I~v~~~~  434 (773)
                      .|+||+|.+.+++
T Consensus        82 ~f~gR~v~v~f~~   94 (104)
T d1o0pa_          82 KFANRVVVTKYCD   94 (104)
T ss_dssp             CSSSSCCEEEEEC
T ss_pred             EECCeEEEEEEcC
Confidence            9999999999976

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.7e-13  Score=113.66  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=67.7

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc--CCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l--ng~~l~  291 (773)
                      .+++|||+|||.++|+++|+++|++||.|..        |++.++      +|+|||+|.+.++|..|++.+  ++..+.
T Consensus         7 Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~~~~~------~~~afV~f~~~e~A~~a~~~~~~~~~~~~   72 (88)
T d2cq1a1           7 PSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR   72 (88)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccccccc--------cccccc------ceEEEEEeCCHHHHHHHHHHHccCCCccC
Confidence            6789999999999999999999999999998        888754      469999999999999999865  677899


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|++++.
T Consensus        73 g~~l~v~~sk~   83 (88)
T d2cq1a1          73 NQPIYIQYSNH   83 (88)
T ss_dssp             TEECEEEECSC
T ss_pred             CCEEEEEECCC
Confidence            99999999863

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.8e-13  Score=117.66  Aligned_cols=75  Identities=16%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             CCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH--HhCCce
Q psy2160         498 QENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS--ILDGYE  574 (773)
Q Consensus       498 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~--~lng~~  574 (773)
                      ..+++|||+|||.+ +|+++|.++|++||.|.        +|.++++      +|+|||+|.+.++|..|++  .+++..
T Consensus        16 ~~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~--------~v~~~~~------k~~afV~f~~~~~A~~Ai~~~~~~~~~   81 (99)
T d1x4fa1          16 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK--------NYILMRM------KSQAFIEMETREDAMAMVDHCLKKALW   81 (99)
T ss_dssp             CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS--------EEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCcCCccCHHHHHhhhcccccee--------EEEEeec------CCcEEEEecchHHHHHHHHHHhcCCce
Confidence            45689999999986 89999999999999999        7888754      6899999999999999997  578889


Q ss_pred             ecCeEEEEEEcc
Q psy2160         575 IRGKKIKVERAK  586 (773)
Q Consensus       575 i~g~~i~V~~a~  586 (773)
                      |.|++|+|.+|+
T Consensus        82 ~~gr~l~V~~s~   93 (99)
T d1x4fa1          82 FQGRCVKVDLSE   93 (99)
T ss_dssp             SSSSCCEEEEEC
T ss_pred             ECCEEEEEEEcC
Confidence            999999999997

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.2e-13  Score=114.11  Aligned_cols=76  Identities=11%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             CCCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh--CCc
Q psy2160         497 AQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGY  573 (773)
Q Consensus       497 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l--ng~  573 (773)
                      ....++|||+|||.. +|+++|.++|++||.|.        +|.+..+      +++|||+|.+.++|..|+..|  ++.
T Consensus         5 ~~~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~--------~i~i~~~------k~~afV~f~~~~~A~~A~~~l~~~~~   70 (89)
T d1x4da1           5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS--------NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPA   70 (89)
T ss_dssp             CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE--------EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred             CCCCcEEEEECCCCCcCCHHHHHHHHHhhCCeE--------EEEeecc------ceEEEEEEcchhhHHHHHHHHhhCCC
Confidence            456789999999986 78999999999999999        7888755      579999999999999999966  688


Q ss_pred             eecCeEEEEEEcc
Q psy2160         574 EIRGKKIKVERAK  586 (773)
Q Consensus       574 ~i~g~~i~V~~a~  586 (773)
                      .+.|++|+|.+|+
T Consensus        71 ~~~gr~l~V~~s~   83 (89)
T d1x4da1          71 LVFGKPVRVHLSQ   83 (89)
T ss_dssp             EETTEECEEEEEC
T ss_pred             ccCCceEEEEECC
Confidence            8999999999997

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-14  Score=122.86  Aligned_cols=82  Identities=17%  Similarity=0.276  Sum_probs=67.6

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      ++|||+|||.++|+++|+++|+.||.|......   ......+..++.++|||||+|.+.++|..|+. |||..|.|++|
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~---~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~-l~g~~~~Gr~l   77 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA---PGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSL   77 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCS---SSCSEEECCEETTTTEEEEEESSCTTTTTGGG-GSSCCSSSSCC
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEe---ccceeeecccCCCceEEEEEeCCHHHHHHHHh-hCCcEECCEEE
Confidence            589999999999999999999999988632111   11123344567889999999999999999994 99999999999


Q ss_pred             EEEEcc
Q psy2160         581 KVERAK  586 (773)
Q Consensus       581 ~V~~a~  586 (773)
                      +|.+++
T Consensus        78 ~V~r~k   83 (90)
T d1u2fa_          78 KIRRPH   83 (90)
T ss_dssp             CCBCTT
T ss_pred             EECCCC
Confidence            998765

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.4e-12  Score=114.29  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=67.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc--CCceec
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEIR  291 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l--ng~~l~  291 (773)
                      .+.+|||+|||.++|+++|.++|++||.|..        |+|.++      +|+|||+|.+.++|..||..|  ++..+.
T Consensus        14 ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~--------~~~~~~------k~~AfV~f~~~e~A~~ai~~~~~~~~~~~   79 (104)
T d1wexa_          14 VSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA   79 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhhhhcccceE--------EEEEec------ceeEEEEeCCHHHHHHHHHHHcCCCcEEe
Confidence            6789999999999999999999999999998        888643      679999999999999999977  556688


Q ss_pred             CeEEEEEeecc
Q psy2160         292 GKKIKVERAKF  302 (773)
Q Consensus       292 g~~I~V~~A~~  302 (773)
                      |++|+|++++.
T Consensus        80 g~~l~v~~s~~   90 (104)
T d1wexa_          80 GQQAFFNYSTS   90 (104)
T ss_dssp             SSBCEEEECSS
T ss_pred             eEEEEEEEcCC
Confidence            99999999874

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=9.2e-13  Score=115.31  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=68.5

Q ss_pred             CCCCEEEEcCCCCCC-C----HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160         498 QENTKVYVSNLPLDL-T----QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  572 (773)
Q Consensus       498 ~~~~~l~V~nLp~~~-t----~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng  572 (773)
                      ...++|||+||+.++ +    .++|+++|+.||.|.        +|++++      ++|+|||+|.+.++|..|+..|||
T Consensus         3 ~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~--------~~~~~k------~~~~afV~f~~~~~A~~Ai~~lng   68 (104)
T d1weya_           3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDT--------TFQYFK------SFKRVRINFSNPLSAADARLRLHK   68 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--------EEEEET------TTTEEEEECSSTTHHHHHHHTSTT
T ss_pred             CCCceEEEEeCCchhcCcHHHHHHHHHHhcccccce--------EEEEec------CCCEEEEEECCHHHHHHHHHHhcc
Confidence            356899999999886 3    367999999999999        788874      378999999999999999999999


Q ss_pred             ceecCeEEEEEEcccc
Q psy2160         573 YEIRGKKIKVERAKFT  588 (773)
Q Consensus       573 ~~i~g~~i~V~~a~~~  588 (773)
                      ..|.|++|+|.+|+..
T Consensus        69 ~~~~g~~l~v~~a~~~   84 (104)
T d1weya_          69 TEFLGKEMKLYFAQTL   84 (104)
T ss_dssp             SEETTEECEEECCCCS
T ss_pred             cccCCCEeEEeecccC
Confidence            9999999999999854

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-13  Score=120.60  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160         215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  294 (773)
Q Consensus       215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~  294 (773)
                      .+.++|++++.++++++|+++|++||.|.+        |+|+++.. |.++|+|||+|.+.++|.+|++.|||..|.|++
T Consensus        27 ~~~~~v~~~~~~~~ed~l~e~f~k~G~I~~--------v~I~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~   97 (104)
T d1jmta_          27 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP   97 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             cchHHhhhhhhhhhHHHHHHHhccCCCEEE--------EEeecCCC-CCEeeEEEEEEechhHHHHHHHHHCCCEECCEE
Confidence            367899999999999999999999999999        99988864 999999999999999999999999999999999


Q ss_pred             EEEEee
Q psy2160         295 IKVERA  300 (773)
Q Consensus       295 I~V~~A  300 (773)
                      |+|+++
T Consensus        98 i~v~~s  103 (104)
T d1jmta_          98 IHAELS  103 (104)
T ss_dssp             CCEEEC
T ss_pred             EEEEEC
Confidence            999764

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.9e-12  Score=109.99  Aligned_cols=74  Identities=11%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc--CCcee
Q psy2160         214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEI  290 (773)
Q Consensus       214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l--ng~~l  290 (773)
                      .+..|||+|||.. +|++||.++|++||.|..        |.|.++      +++|||.|.+.++|..|++.|  ++..+
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~--------i~i~~~------k~~afV~f~~~~~A~~A~~~l~~~~~~~   72 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV   72 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEE--------EEeecc------ceEEEEEEcchhhHHHHHHHHhhCCCcc
Confidence            5688999999986 889999999999999998        888754      458999999999999999965  67789


Q ss_pred             cCeEEEEEeec
Q psy2160         291 RGKKIKVERAK  301 (773)
Q Consensus       291 ~g~~I~V~~A~  301 (773)
                      .|++|+|.+|+
T Consensus        73 ~gr~l~V~~s~   83 (89)
T d1x4da1          73 FGKPVRVHLSQ   83 (89)
T ss_dssp             TTEECEEEEEC
T ss_pred             CCceEEEEECC
Confidence            99999999986

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.7e-12  Score=111.38  Aligned_cols=78  Identities=14%  Similarity=0.078  Sum_probs=68.7

Q ss_pred             CCccEEEEcCCCCCC-CH----HHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160         213 EESTKVYVSNLPLDL-TQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG  287 (773)
Q Consensus       213 ~~~~~VyV~nLP~~~-te----~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng  287 (773)
                      +.+++|||+||+.++ ++    ++|+++|+.||.|..        +++.+      ++|+|||.|.+.++|..|++.|||
T Consensus         3 ~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~--------~~~~k------~~~~afV~f~~~~~A~~Ai~~lng   68 (104)
T d1weya_           3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTT--------FQYFK------SFKRVRINFSNPLSAADARLRLHK   68 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE--------EEEET------TTTEEEEECSSTTHHHHHHHTSTT
T ss_pred             CCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceE--------EEEec------CCCEEEEEECCHHHHHHHHHHhcc
Confidence            367999999999986 33    569999999999998        88874      467999999999999999999999


Q ss_pred             ceecCeEEEEEeecccc
Q psy2160         288 YEIRGKKIKVERAKFTM  304 (773)
Q Consensus       288 ~~l~g~~I~V~~A~~~~  304 (773)
                      ..|.|++|+|.+|+...
T Consensus        69 ~~~~g~~l~v~~a~~~~   85 (104)
T d1weya_          69 TEFLGKEMKLYFAQTLH   85 (104)
T ss_dssp             SEETTEECEEECCCCSS
T ss_pred             cccCCCEeEEeecccCC
Confidence            99999999999987543

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.5e-13  Score=116.76  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=70.7

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI  580 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i  580 (773)
                      +.++|++++.+++++.|+++|++||.|.        +|+|+++. +|.++|+|||+|.+.++|.+|++.|||..|.|++|
T Consensus        28 ~~~~v~~~~~~~~ed~l~e~f~k~G~I~--------~v~I~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i   98 (104)
T d1jmta_          28 SDVEMQEHYDEFFEEVFTEMEEKYGEVE--------EMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI   98 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEE--------EEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             chHHhhhhhhhhhHHHHHHHhccCCCEE--------EEEeecCC-CCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEE
Confidence            4588889999999999999999999999        89998775 69999999999999999999999999999999999


Q ss_pred             EEEEc
Q psy2160         581 KVERA  585 (773)
Q Consensus       581 ~V~~a  585 (773)
                      .|++.
T Consensus        99 ~v~~s  103 (104)
T d1jmta_          99 HAELS  103 (104)
T ss_dssp             CEEEC
T ss_pred             EEEEC
Confidence            99874

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.5e-11  Score=102.11  Aligned_cols=72  Identities=21%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK  293 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~  293 (773)
                      +.+.|+|+|||++++++ +.++|++||.|.+        +++      ++.+|||||.|.++++|.+||+ +||..|.|+
T Consensus         3 ~~~wV~V~G~p~~~~~~-il~~F~~~G~I~~--------~~~------~~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~   66 (81)
T d1wwha1           3 DDTWVTVFGFPQASASY-ILLQFAQYGNILK--------HVM------SNTGNWMHIRYQSKLQARKALS-KDGRIFGES   66 (81)
T ss_dssp             GGGEEEEECCCGGGHHH-HHHHHHTTSCEEE--------EEE------CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred             cccEEEEECCChHHHHH-HHHHHHhhhhhhe--------EEe------cCCCCEEEEEEcccHHHHHHHh-cCCCeECCc
Confidence            45889999999999865 5568999999998        776      4557899999999999999997 999999997


Q ss_pred             E-EEEEeec
Q psy2160         294 K-IKVERAK  301 (773)
Q Consensus       294 ~-I~V~~A~  301 (773)
                      . |.|.++.
T Consensus        67 ~~vgV~~~~   75 (81)
T d1wwha1          67 IMIGVKPCI   75 (81)
T ss_dssp             EECEEEECC
T ss_pred             EEEEEEeCC
Confidence            5 5687765

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.2e-11  Score=105.80  Aligned_cols=66  Identities=24%  Similarity=0.406  Sum_probs=58.0

Q ss_pred             CCCCCEEEEcC--CCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160         497 AQENTKVYVSN--LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE  574 (773)
Q Consensus       497 ~~~~~~l~V~n--Lp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~  574 (773)
                      ..+.++|+|.|  ||.++|+++|+++|++||.|.        .|++..+      +|||||+|.+.++|..|+..|||..
T Consensus        15 ~~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~--------~i~~~~~------k~~aFV~f~~~e~A~~A~~~lng~~   80 (101)
T d2cq2a1          15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPPN------KPYSFARYRTTEESKRAYVTLNGKE   80 (101)
T ss_dssp             SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE--------EEECCTT------CSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred             CCCCceEEEECCCCCCCCCHHHHHHHHHhhCccc--------EEeeccC------ccEEEEEECCHHHHHHHHHHhCCCC
Confidence            34567888855  999999999999999999998        6777644      6799999999999999999999998


Q ss_pred             ec
Q psy2160         575 IR  576 (773)
Q Consensus       575 i~  576 (773)
                      +.
T Consensus        81 i~   82 (101)
T d2cq2a1          81 VV   82 (101)
T ss_dssp             EE
T ss_pred             CC
Confidence            84

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=7.3e-11  Score=97.87  Aligned_cols=71  Identities=21%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160         500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK  579 (773)
Q Consensus       500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~  579 (773)
                      .+.|+|.|||++++++ +..+|++||.|.        ++++.      +.+|||||+|.++++|.+||+ +||..|.|+.
T Consensus         4 ~~wV~V~G~p~~~~~~-il~~F~~~G~I~--------~~~~~------~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~~   67 (81)
T d1wwha1           4 DTWVTVFGFPQASASY-ILLQFAQYGNIL--------KHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESI   67 (81)
T ss_dssp             GGEEEEECCCGGGHHH-HHHHHHTTSCEE--------EEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred             ccEEEEECCChHHHHH-HHHHHHhhhhhh--------eEEec------CCCCEEEEEEcccHHHHHHHh-cCCCeECCcE
Confidence            4789999999999865 556899999998        67653      347999999999999999995 9999999985


Q ss_pred             -EEEEEcc
Q psy2160         580 -IKVERAK  586 (773)
Q Consensus       580 -i~V~~a~  586 (773)
                       |.|.++.
T Consensus        68 ~vgV~~~~   75 (81)
T d1wwha1          68 MIGVKPCI   75 (81)
T ss_dssp             ECEEEECC
T ss_pred             EEEEEeCC
Confidence             5798876

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.3e-11  Score=106.21  Aligned_cols=74  Identities=8%  Similarity=0.052  Sum_probs=64.5

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCCh-HHHHHHHHHhCCceecC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK-ESVDLALSILDGYEIRG  577 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~-e~A~~Ai~~lng~~i~g  577 (773)
                      ....+||+|||.++|+++|+++|++||.|.        .|.|+++      +|||||.|.++ ++|..|+..||+..+.+
T Consensus        10 g~~~~fvgnL~~~~tee~Lk~~F~~fG~V~--------~v~i~~~------kg~gfV~F~~~~~~A~~a~~~~~~~~l~~   75 (113)
T d1owxa_          10 GCLLKFSGDLDDQTCREDLHILFSNHGEIK--------WIDFVRG------AKEGIILFKEKAKEALGKAKDANNGNLQL   75 (113)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHTCSSCCEE--------EEECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred             CCeEEEECCCCCCCCHHHHHHHHHhcCChh--------eEEEecC------CceEEEEecCcHHHHHHHHHHhcCCceec
Confidence            445669999999999999999999999999        7888743      78999999986 78999999999999988


Q ss_pred             eEEEEEEcc
Q psy2160         578 KKIKVERAK  586 (773)
Q Consensus       578 ~~i~V~~a~  586 (773)
                      +.+.|.++.
T Consensus        76 ~~~~v~~~~   84 (113)
T d1owxa_          76 RNKEVTWEV   84 (113)
T ss_dssp             TSSSEEEEE
T ss_pred             CceEEEEee
Confidence            777777665

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.3e-10  Score=100.80  Aligned_cols=64  Identities=23%  Similarity=0.406  Sum_probs=56.1

Q ss_pred             CccEEEE--cCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160         214 ESTKVYV--SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR  291 (773)
Q Consensus       214 ~~~~VyV--~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~  291 (773)
                      ...+|||  +|||.++|+++|+++|++||.|..        |++.++      +|||||.|.+.++|..|+..|||..+.
T Consensus        17 pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~--------i~~~~~------k~~aFV~f~~~e~A~~A~~~lng~~i~   82 (101)
T d2cq2a1          17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVV   82 (101)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             CCceEEEECCCCCCCCCHHHHHHHHHhhCcccE--------EeeccC------ccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence            3467777  559999999999999999999997        777643      569999999999999999999999873

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.6e-10  Score=102.39  Aligned_cols=74  Identities=8%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecCh-HHHHHHHHHcCCceecC
Q psy2160         214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK-ESVDLALSILDGYEIRG  292 (773)
Q Consensus       214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~-esA~~Al~~lng~~l~g  292 (773)
                      .-..+||+|||.++|+++|+++|++||.|..        |.|+++      +|||||.|.++ ++|..|+..||+..+.+
T Consensus        10 g~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~--------v~i~~~------kg~gfV~F~~~~~~A~~a~~~~~~~~l~~   75 (113)
T d1owxa_          10 GCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRG------AKEGIILFKEKAKEALGKAKDANNGNLQL   75 (113)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred             CCeEEEECCCCCCCCHHHHHHHHHhcCChhe--------EEEecC------CceEEEEecCcHHHHHHHHHHhcCCceec
Confidence            4456699999999999999999999999998        888743      68999999996 67889999999999888


Q ss_pred             eEEEEEeec
Q psy2160         293 KKIKVERAK  301 (773)
Q Consensus       293 ~~I~V~~A~  301 (773)
                      +.+.|.++.
T Consensus        76 ~~~~v~~~~   84 (113)
T d1owxa_          76 RNKEVTWEV   84 (113)
T ss_dssp             TSSSEEEEE
T ss_pred             CceEEEEee
Confidence            777776554

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=8.4e-05  Score=57.19  Aligned_cols=65  Identities=25%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhcCCceeEEEecCC-CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160         656 LEYQQDLREECSKCGHVKKVVLHDK-HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  720 (773)
Q Consensus       656 ~~l~edl~~~f~~fG~V~~v~i~~~-~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg  720 (773)
                      .+|++-|...|.+||.|.+|.|..- ...-.|.|...+.++|.-|+..|+-+.+|+++|.|+|..|
T Consensus         7 kelqq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~~   72 (73)
T d2dgxa1           7 KELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG   72 (73)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence            5788999999999999999998652 2234699999999999999999999999999999999655

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00039  Score=56.20  Aligned_cols=79  Identities=11%  Similarity=0.208  Sum_probs=60.8

Q ss_pred             CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160         632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR  711 (773)
Q Consensus       632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr  711 (773)
                      ++..+|+|.=....  .++++.|=..|..+|.+.|..||.|+-|.+..    +-..|.|.+-++|.+|+. |+|..+.||
T Consensus        13 PpDgTIvV~i~~~s--~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv~----d~mwVTF~dG~SAL~al~-l~g~~v~G~   85 (95)
T d1ufwa_          13 PLDATVVVNLQSPT--LEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ----GQMLVTFADSHSALSVLD-VDGMKVKGR   85 (95)
T ss_dssp             CTTCEEEEEESSCC--HHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET----TEEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred             CCCcEEEEEeccCC--ccccccCCHHHHHHHHHHHhhCCeEEEEEEeC----CeEEEEECCcHHHHHHhc-cCCeEEcce
Confidence            44566777544322  22223344456789999999999999998887    569999999999999887 699999999


Q ss_pred             EEEEEE
Q psy2160         712 QITAET  717 (773)
Q Consensus       712 ~l~v~~  717 (773)
                      .|.+..
T Consensus        86 ~l~It~   91 (95)
T d1ufwa_          86 AVKISG   91 (95)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999864

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0018  Score=49.66  Aligned_cols=65  Identities=25%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhccCCEEEEEeeCC-CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCC
Q psy2160         371 LEYQQDLREECSKCGHVKKVVLHDK-HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG  435 (773)
Q Consensus       371 ~ei~edL~e~f~k~G~V~~V~i~d~-~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~  435 (773)
                      .++++-|.+.|.++|.|.++.+... ...-.|-|...+.++|..|+..||.+.+++++|.|.+..|
T Consensus         7 kelqq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~~   72 (73)
T d2dgxa1           7 KELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG   72 (73)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence            3678999999999999999988642 3355799999999999999999999999999999998654

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0016  Score=53.42  Aligned_cols=79  Identities=24%  Similarity=0.278  Sum_probs=61.4

Q ss_pred             cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCC-c-ceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160         216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-F-KGDALCTYIKKESVDLALSILDGYEIRG-  292 (773)
Q Consensus       216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~-~-kG~AfV~F~~~esA~~Al~~lng~~l~g-  292 (773)
                      |+|-|+.||+..|++++.+.++..|.+..        ......+.+-+ + -.-|||.|.+.+++....+..+|..|.+ 
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~--------~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~   73 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEE--------EEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcC
Confidence            78999999999999999999998887765        55554433222 1 2569999999999999999999999853 


Q ss_pred             ----eEEEEEeecc
Q psy2160         293 ----KKIKVERAKF  302 (773)
Q Consensus       293 ----~~I~V~~A~~  302 (773)
                          .+-.|+.|-+
T Consensus        74 ~g~~~~a~VE~AP~   87 (91)
T d1uw4a_          74 KGQEYPAIVEFAPF   87 (91)
T ss_dssp             TCCEEECEEEECSS
T ss_pred             CCCEeeeEEEEcCc
Confidence                3445666654

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0071  Score=49.40  Aligned_cols=79  Identities=24%  Similarity=0.309  Sum_probs=60.5

Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-CC-CcceEEEEeCChHHHHHHHHHhCCceecC-
Q psy2160         501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KD-FKGDALCTYIKKESVDLALSILDGYEIRG-  577 (773)
Q Consensus       501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g~-~kG~afV~f~~~e~A~~Ai~~lng~~i~g-  577 (773)
                      +.|.|++||+.+|++++.+.++..|.+.        .........+ +. .-.-|+|.|.+.+++..-.+.++|+.|.+ 
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d--------~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D~   73 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD--------YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN   73 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEE--------EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceE--------EEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEcC
Confidence            6899999999999999999999888776        3444433322 11 12469999999999999999999999863 


Q ss_pred             --e--EEEEEEccc
Q psy2160         578 --K--KIKVERAKF  587 (773)
Q Consensus       578 --~--~i~V~~a~~  587 (773)
                        .  +-.|++|-+
T Consensus        74 ~g~~~~a~VE~AP~   87 (91)
T d1uw4a_          74 KGQEYPAIVEFAPF   87 (91)
T ss_dssp             TCCEEECEEEECSS
T ss_pred             CCCEeeeEEEEcCc
Confidence              2  346777764

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0044  Score=49.91  Aligned_cols=77  Identities=13%  Similarity=0.276  Sum_probs=58.4

Q ss_pred             CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeE
Q psy2160         349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI  428 (773)
Q Consensus       349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I  428 (773)
                      +.+|+|.-. .+ ..++++.+...+..+|.+.|..||+|.-|++.    .+...|.|.+-++|.+|+. ++|..+.|+.|
T Consensus        15 DgTIvV~i~-~~-s~e~~~~FDe~l~~~Llq~l~~~GeViLvRFv----~d~mwVTF~dG~SAL~al~-l~g~~v~G~~l   87 (95)
T d1ufwa_          15 DATVVVNLQ-SP-TLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN----QGQMLVTFADSHSALSVLD-VDGMKVKGRAV   87 (95)
T ss_dssp             TCEEEEEES-SC-CHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEE----TTEEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred             CcEEEEEec-cC-CccccccCCHHHHHHHHHHHhhCCeEEEEEEe----CCeEEEEECCcHHHHHHhc-cCCeEEcceEE
Confidence            456666444 21 12222333345668899999999999999887    4569999999999999988 79999999999


Q ss_pred             EEEe
Q psy2160         429 TAET  432 (773)
Q Consensus       429 ~v~~  432 (773)
                      .+..
T Consensus        88 ~It~   91 (95)
T d1ufwa_          88 KISG   91 (95)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9964

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.04  E-value=0.048  Score=44.45  Aligned_cols=59  Identities=15%  Similarity=0.290  Sum_probs=50.8

Q ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160         212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  286 (773)
Q Consensus       212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln  286 (773)
                      .|....||.-..|......+|.++|+.||.|.         |..+-|.       -|||...+.++|..++.+++
T Consensus        12 ~p~RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~---------VswIddT-------Sa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          12 QPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CCCCCSEEEEECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred             CCCcceeEEEeCCcccchhHHHHHhcCCCceE---------EEEecCc-------eEEEEecCHHHHHHHHHHhc
Confidence            35778999999999999999999999999998         5666443       59999999999999988654

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.66  E-value=0.1  Score=42.43  Aligned_cols=57  Identities=16%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160         499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD  571 (773)
Q Consensus       499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln  571 (773)
                      ....||.-.+|......+|.++|+.||.|.         |..+-|.       -|||...+.++|..++..+.
T Consensus        14 ~RdHVf~~tFP~~Wk~~dI~~lFSpfG~V~---------VswIddT-------Sa~V~L~~~e~~~~v~~~~~   70 (100)
T d1whva_          14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CCCSEEEEECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred             CcceeEEEeCCcccchhHHHHHhcCCCceE---------EEEecCc-------eEEEEecCHHHHHHHHHHhc
Confidence            456788889999999999999999999997         6666442       59999999999999987654