Psyllid ID: psy2161

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEccEEEEEEEcccccHHHcccccccccccEEEEEEEccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHcccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHcccccccccccEEEEEEEEccEEEEEEEEccccccHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHHcHHHcccccccccHHHHccccEEEEEEEcccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlkndrtaqhmptlhptseelsmgdivftthdlgghvqarrvwrdyfpavDAIVFIIdasdrsrfpeskyeldslladdaltdvpililgnkidifdaaseDEVRHFFGlyglttgkeftsreilqmrpIELFMCSVLKRQGFGNGFRWLANYID
Flexible Loop (DISEMBL)
mlkndrtaqhmptlhptseelsmGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIidasdrsrfPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLyglttgkeftsREILQMRPIELFMCSVLKrqgfgngfRWLANYID
Low Complexity Region (SEG)
MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEldslladdaltdVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID
Disordered region (IsUnstruct)
**********************MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI*
Disordered Region (DISOPRED)
MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI*
Disordered Region (DISEMBL)
**********MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID
Disordered Region (DISPRO)
MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q9CQC9	198	GTP-binding protein SAR1b	yes	N/A	1.0	0.782	0.632	6e-56
Q5PYH3	198	GTP-binding protein SAR1b	yes	N/A	1.0	0.782	0.632	6e-56
Q9Y6B6	198	GTP-binding protein SAR1b	yes	N/A	1.0	0.782	0.632	7e-56
Q3T0T7	198	GTP-binding protein SAR1b	yes	N/A	1.0	0.782	0.632	7e-56
Q9QVY3	198	GTP-binding protein SAR1b	no	N/A	1.0	0.782	0.625	8e-56
Q5R548	198	GTP-binding protein SAR1a	yes	N/A	1.0	0.782	0.619	8e-56
Q9NR31	198	GTP-binding protein SAR1a	no	N/A	1.0	0.782	0.619	8e-56
Q5HZY2	198	GTP-binding protein SAR1b	no	N/A	1.0	0.782	0.625	1e-55
Q52NJ3	198	GTP-binding protein SAR1a	no	N/A	1.0	0.782	0.612	5e-55
Q3T0D7	198	GTP-binding protein SAR1a	no	N/A	1.0	0.782	0.612	5e-55

>sp|Q9CQC9|SAR1B_MOUSE GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1

 Score =  216 bits (549), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.
Mus musculus (taxid: 10090)

>sp|Q5PYH3|SAR1B_PIG GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1

 Score =  216 bits (549), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Sus scrofa (taxid: 9823)

>sp|Q9Y6B6|SAR1B_HUMAN GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1

 Score =  215 bits (548), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSI 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Homo sapiens (taxid: 9606)

>sp|Q3T0T7|SAR1B_BOVIN GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1

 Score =  215 bits (548), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Bos taurus (taxid: 9913)

>sp|Q9QVY3|SAR1B_CRIGR GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1

 Score =  215 bits (548), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Cricetulus griseus (taxid: 10029)

>sp|Q5R548|SAR1A_PONAB GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1

 Score =  215 bits (548), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 124/155 (80%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D SR  ESK EL++L+ D+ +++VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct: 104 DHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct: 164 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Pongo abelii (taxid: 9601)

>sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1

 Score =  215 bits (548), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 124/155 (80%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D SR  ESK EL++L+ D+ +++VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct: 104 DHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct: 164 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus (By similarity). Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Homo sapiens (taxid: 9606)

>sp|Q5HZY2|SAR1B_RAT GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1

 Score =  214 bits (546), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Rattus norvegicus (taxid: 10116)

>sp|Q52NJ3|SAR1A_PIG GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1

 Score =  213 bits (541), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 123/155 (79%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK EL++L+ D+ +++VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct: 104 DHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct: 164 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Sus scrofa (taxid: 9823)

>sp|Q3T0D7|SAR1A_BOVIN GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1

 Score =  213 bits (541), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 123/155 (79%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK EL++L+ D+ +++VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct: 104 DHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct: 164 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
307184460	193	GTP-binding protein SAR1b [Camponotus fl	1.0	0.803	0.722	2e-61
389611542	193	GTP-binding protein sar1 [Papilio xuthus	1.0	0.803	0.741	3e-61
322788175	193	hypothetical protein SINV_06472 [Solenop	1.0	0.803	0.716	6e-61
157124857	193	GTP-binding protein sar1 [Aedes aegypti]	1.0	0.803	0.741	6e-61
217425997	193	Sar1 [Drosophila silvestris]	1.0	0.803	0.735	7e-61
383857327	193	PREDICTED: GTP-binding protein SAR1b-lik	1.0	0.803	0.722	7e-61
195112642	193	GI10474 [Drosophila mojavensis] gi|19539	1.0	0.803	0.735	7e-61
195053558	193	GH21130 [Drosophila grimshawi] gi|193895	1.0	0.803	0.735	8e-61
307209691	193	GTP-binding protein SAR1b [Harpegnathos	1.0	0.803	0.716	8e-61
170052591	193	GTP-binding protein SAR2 [Culex quinquef	1.0	0.803	0.741	8e-61

>gi|307184460|gb|EFN70863.1| GTP-binding protein SAR1b [Camponotus floridanus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF++DAS
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDAS 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DRSR PESK ELD+LL D+ L+  P+L+LGNKID   AASEDE+R+FF LYG TTGK   
Sbjct: 99  DRSRLPESKTELDALLTDEQLSACPVLVLGNKIDKPSAASEDELRNFFNLYGQTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  +  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARNEIPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611542|dbj|BAM19374.1| GTP-binding protein sar1 [Papilio xuthus]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 128/155 (82%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G + FTT DLGGH QARRVWRDYFPAVDAIVF++DA 
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVDAC 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR+R PESK ELDSLL DD L++ P+LILGNKID   AASEDE+R FF LY  TTGK   
Sbjct: 99  DRARLPESKTELDSLLTDDTLSNCPVLILGNKIDKPGAASEDELRQFFNLYQQTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           SR  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 SRSELPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788175|gb|EFZ13957.1| hypothetical protein SINV_06472 [Solenopsis invicta] gi|332027699|gb|EGI67767.1| GTP-binding protein SAR1b [Acromyrmex echinatior]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF++DAS
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDAS 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR+R PESK ELD+LL D+ L+  P+L+LGNKID   AASEDE+R+FF LYG TTGK   
Sbjct: 99  DRTRLPESKAELDALLTDEQLSACPVLVLGNKIDKPSAASEDELRNFFNLYGQTTGKGKI 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  +  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARSEIPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124857|ref|XP_001660557.1| GTP-binding protein sar1 [Aedes aegypti] gi|94468896|gb|ABF18297.1| vesicle coat complex COPII GTPase subunit SAR1 [Aedes aegypti] gi|108873845|gb|EAT38070.1| AAEL010012-PA [Aedes aegypti]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA 
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAW 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DRSRF ESK ELDSLL D+AL++ P+LILGNKID   AASEDE+R+ F LY LTTGK   
Sbjct: 99  DRSRFAESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNHFALYQLTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARNELPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|217425997|gb|ACK44330.1| Sar1 [Drosophila silvestris]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+D+ AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA 
Sbjct: 39  MLKDDKLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAW 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR RF ESK ELDSLL D+AL++ P+LILGNKID   AASEDE+R+ FGLY LTTGK   
Sbjct: 99  DRGRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNMFGLYQLTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARSELPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Drosophila silvestris

Species: Drosophila silvestris

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857327|ref|XP_003704156.1| PREDICTED: GTP-binding protein SAR1b-like [Megachile rotundata]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 130/155 (83%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF++DAS
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGNMRFTTFDLGGHPQARRVWKDYFPAVDAIVFLVDAS 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DRSR PESK E D+LL D+ L+  P+L+LGNKID   AASEDE+R++F LYG TTGK   
Sbjct: 99  DRSRLPESKAEFDALLTDEQLSACPVLVLGNKIDKPGAASEDELRNYFNLYGQTTGKGKI 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           SR  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 SRSELSGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112642|ref|XP_002000881.1| GI10474 [Drosophila mojavensis] gi|195390243|ref|XP_002053778.1| GJ23156 [Drosophila virilis] gi|193917475|gb|EDW16342.1| GI10474 [Drosophila mojavensis] gi|194151864|gb|EDW67298.1| GJ23156 [Drosophila virilis]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+D+ AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA 
Sbjct: 39  MLKDDKLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAW 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR RF ESK ELDSLL D+AL++ P+LILGNKID   AASEDE+R+ FGLY LTTGK   
Sbjct: 99  DRGRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNVFGLYQLTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARSELPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053558|ref|XP_001993693.1| GH21130 [Drosophila grimshawi] gi|193895563|gb|EDV94429.1| GH21130 [Drosophila grimshawi]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+D+ AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA 
Sbjct: 39  MLKDDKLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAW 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR RF ESK ELDSLL D+AL++ P+LILGNKID   AASEDE+R+ FGLY LTTGK   
Sbjct: 99  DRGRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNMFGLYQLTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARSDLPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209691|gb|EFN86549.1| GTP-binding protein SAR1b [Harpegnathos saltator]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF++DAS
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDAS 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR+R PES+ ELD+LL D+ L+  P+L+LGNKID   AASEDE+R+FF LYG TTGK   
Sbjct: 99  DRTRLPESRAELDALLTDEQLSACPVLVLGNKIDKPSAASEDELRNFFNLYGQTTGKGKI 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           SR  +  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 SRNEIPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052591|ref|XP_001862291.1| GTP-binding protein SAR2 [Culex quinquefasciatus] gi|167873446|gb|EDS36829.1| GTP-binding protein SAR2 [Culex quinquefasciatus]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 131/155 (84%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEELS+G++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA 
Sbjct: 39  MLKDDRLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAW 98

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DRSRF ESK ELDSLL D+AL++ P+LILGNKID   AASEDE+R+ F LY LTTGK   
Sbjct: 99  DRSRFTESKNELDSLLTDEALSNCPVLILGNKIDKPGAASEDELRNHFALYQLTTGKGKV 158

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           +R  L  RP+ELFMCSVLKRQG+G GFRWLA YID
Sbjct: 159 ARNELPGRPLELFMCSVLKRQGYGEGFRWLAQYID 193

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
UNIPROTKB|B4DQ19	155	SAR1A "cDNA FLJ58922, highly s	1.0	1.0	0.6	2e-47
UNIPROTKB|Q9NR31	198	SAR1A "GTP-binding protein SAR	1.0	0.782	0.6	2e-47
RGD|1359540	198	Sar1a "SAR1 homolog A (S. cere	1.0	0.782	0.6	2e-47
UNIPROTKB|Q5PYH3	198	SAR1B "GTP-binding protein SAR	1.0	0.782	0.6	2.6e-47
MGI|MGI:1913647	198	Sar1b "SAR1 gene homolog B (S.	1.0	0.782	0.6	2.6e-47
UNIPROTKB|Q3T0T7	198	SAR1B "GTP-binding protein SAR	1.0	0.782	0.6	3.3e-47
UNIPROTKB|E2RRQ3	198	SAR1B "Uncharacterized protein	1.0	0.782	0.6	3.3e-47
UNIPROTKB|Q9Y6B6	198	SAR1B "GTP-binding protein SAR	1.0	0.782	0.6	3.3e-47
UNIPROTKB|Q9QVY3	198	SAR1B "GTP-binding protein SAR	1.0	0.782	0.593	3.3e-47
RGD|1305590	198	Sar1b "SAR1 homolog B (S. cere	1.0	0.782	0.593	5.4e-47

UNIPROTKB|B4DQ19 SAR1A "cDNA FLJ58922, highly similar to GTP-binding protein SAR1a" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 93/155 (60%), Positives = 114/155 (73%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct:     1 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 60

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D SR  ESK E            VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct:    61 DHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 120

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct:   121 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 155

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q9NR31 SAR1A "GTP-binding protein SAR1a" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 93/155 (60%), Positives = 114/155 (73%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D SR  ESK E            VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct:   104 DHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct:   164 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 198

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS

RGD|1359540 Sar1a "SAR1 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 93/155 (60%), Positives = 114/155 (73%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D SR  ESK E            VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct:   104 DHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct:   164 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 198

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA;ISO

GO:0016529 "sarcoplasmic reticulum" evidence=IEA;ISO

UNIPROTKB|Q5PYH3 SAR1B "GTP-binding protein SAR1b" [Sus scrofa (taxid:9823)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 93/155 (60%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:1913647 Sar1b "SAR1 gene homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 93/155 (60%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q3T0T7 SAR1B "GTP-binding protein SAR1b" [Bos taurus (taxid:9913)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 93/155 (60%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RRQ3 SAR1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 93/155 (60%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q9Y6B6 SAR1B "GTP-binding protein SAR1b" [Homo sapiens (taxid:9606)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 93/155 (60%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGHVQARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSI 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0003924 "GTPase activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|Q9QVY3 SAR1B "GTP-binding protein SAR1b" [Cricetulus griseus (taxid:10029)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 92/155 (59%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0005515 "protein binding" evidence=IPI

RGD|1305590 Sar1b "SAR1 homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 92/155 (59%), Positives = 113/155 (72%)

Query:     1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
             MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct:    44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCA 103

Query:    61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
             D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct:   104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query:   121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
             S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct:   164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6BVA7	SAR1_DEBHA	3, ., 6, ., 5, ., -	0.5844	0.9806	0.8	yes	N/A
Q5PYH3	SAR1B_PIG	No assigned EC number	0.6322	1.0	0.7828	yes	N/A
Q9CQC9	SAR1B_MOUSE	No assigned EC number	0.6322	1.0	0.7828	yes	N/A
Q6CWR7	SAR1_KLULA	3, ., 6, ., 5, ., -	0.5519	0.9612	0.7842	yes	N/A
Q5BGB9	SAR1_EMENI	3, ., 6, ., 5, ., -	0.6298	0.9741	0.7989	yes	N/A
Q01475	SAR1_SCHPO	3, ., 6, ., 5, ., -	0.6103	0.9806	0.8	yes	N/A
Q3T0T7	SAR1B_BOVIN	No assigned EC number	0.6322	1.0	0.7828	yes	N/A
Q5R548	SAR1A_PONAB	No assigned EC number	0.6193	1.0	0.7828	yes	N/A
Q877B9	SAR1_ASPOR	3, ., 6, ., 5, ., -	0.6363	0.9741	0.7989	yes	N/A
Q755D7	SAR1_ASHGO	3, ., 6, ., 5, ., -	0.5519	0.9612	0.7842	yes	N/A
Q0UKC0	SAR1_PHANO	3, ., 6, ., 5, ., -	0.6103	0.9741	0.8162	N/A	N/A
Q9Y6B6	SAR1B_HUMAN	No assigned EC number	0.6322	1.0	0.7828	yes	N/A
Q01474	SAR1B_ARATH	No assigned EC number	0.5806	1.0	0.8031	no	N/A
Q559R0	SAR1A_DICDI	No assigned EC number	0.5454	0.9677	0.7978	yes	N/A
Q9P4C8	SAR1_PICPG	3, ., 6, ., 5, ., -	0.5779	0.9806	0.8	yes	N/A
P0CR30	SAR1_CRYNJ	3, ., 6, ., 5, ., -	0.6233	0.9741	0.7989	yes	N/A
Q4WJS7	SAR1_ASPFU	3, ., 6, ., 5, ., -	0.6363	0.9741	0.7989	yes	N/A
P0C951	SAR1_ASPNC	3, ., 6, ., 5, ., -	0.6363	0.9741	0.7989	yes	N/A
P0C950	SAR1_ASPNG	3, ., 6, ., 5, ., -	0.6298	0.9741	0.7989	yes	N/A
Q6CB54	SAR1_YARLI	3, ., 6, ., 5, ., -	0.6168	0.9806	0.8	yes	N/A
Q6FUZ9	SAR1_CANGA	3, ., 6, ., 5, ., -	0.5649	0.9612	0.7883	yes	N/A
O04834	SAR1A_ARATH	No assigned EC number	0.5714	0.9935	0.7979	yes	N/A
A3LTA2	SAR1_PICST	3, ., 6, ., 5, ., -	0.5779	0.9806	0.8	yes	N/A
P20606	SAR1_YEAST	3, ., 6, ., 5, ., -	0.5649	0.9612	0.7842	yes	N/A
Q23445	SAR1_CAEEL	No assigned EC number	0.5974	0.9935	0.7979	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	155
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-90
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	2e-74
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-64
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-36
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	2e-28
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	9e-25
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-24
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	9e-23
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	4e-22
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-22
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-21
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	5e-20
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-19
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-18
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-18
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-18
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-18
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	9e-18
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	4e-15
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	2e-14
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-11
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-10
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	6e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-06
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	4e-06
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	2e-05

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  260 bits (666), Expect = 3e-90
 Identities = 102/154 (66%), Positives = 125/154 (81%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR AQH+PTLHPTSEEL++G++ FTT DLGGH QARRVW+DYFP VD IVF++DA+
Sbjct: 38  MLKDDRLAQHVPTLHPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAA 97

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  RF ESK ELDSLL D+ L +VPILILGNKID   A SE+E+R   GLYG TTGK   
Sbjct: 98  DPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAVSEEELREALGLYGTTTGKGGV 157

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
           S ++  +RP+E+FMCSV+KRQG+G GFRWL+ Y+
Sbjct: 158 SLKVSNIRPVEVFMCSVVKRQGYGEGFRWLSQYL 191

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  219 bits (560), Expect = 2e-74
 Identities = 95/154 (61%), Positives = 119/154 (77%), Gaps = 5/154 (3%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLKNDR AQH PT HPTSEEL++G+I FTT DLGGH QARR+W+DYFP V+ IV+++DA 
Sbjct: 36  MLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAY 95

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D+ RF ESK ELD+LL+D+ L  VP LILGNKID   AASEDE+R+  GL   TTGK   
Sbjct: 96  DKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTTGK--- 152

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
               + +RP+E+FMCSV++R G+G GF+WL+ YI
Sbjct: 153 --GKVGVRPVEVFMCSVVRRMGYGEGFKWLSQYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  194 bits (495), Expect = 2e-64
 Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 12/154 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
            LK       +PT+    E ++  ++ FT  D+GG    R +WR+YFP  DA++F++D++
Sbjct: 33  KLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSA 92

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR R  E+K EL +LL ++ L D P+LIL NK D+  A SE E+R   GL+ L       
Sbjct: 93  DRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKD----- 147

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                  RP E+  CS +  +G   G  WL+NYI
Sbjct: 148 -------RPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  123 bits (310), Expect = 1e-36
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 12/152 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
            LK       +PT+    E +   ++ FT  D+GG  + R +W+ Y+   D ++F++D+S
Sbjct: 18  KLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSS 77

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR R  E+K EL  LL ++ L   P+LIL NK D+  A +E E+    GL  +       
Sbjct: 78  DRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKG----- 132

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
                  R   +  CS +   G   G  WL  
Sbjct: 133 -------RRWHIQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  102 bits (256), Expect = 2e-28
 Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 9   QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES 68
             +PT+    E ++  ++ F   DLGG    R  WR Y+   DAI++++D++DR R   S
Sbjct: 26  TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGIS 85

Query: 69  KYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMR 128
           K EL ++L ++ L D  +L+  NK D+  A SE EV    GL  L              R
Sbjct: 86  KSELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVAEKLGLSELKD------------R 133

Query: 129 PIELFMCSVLKRQGFGNGFRWLAN 152
             ++F  S  K +G   G  WL N
Sbjct: 134 TWQIFKTSATKGEGLDEGMDWLVN 157

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 93.2 bits (232), Expect = 9e-25
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    EE+   +I F   D+GG    R  W  Y+   DA++ +ID++DR R P +K E
Sbjct: 45  PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEE 104

Query: 72  LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
           L  +LA + L    +L+L NK D+  A +  E+    GL  +                  
Sbjct: 105 LYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRD------------HTWH 152

Query: 132 LFMCSVLKRQGFGNGFRWLAN 152
           +  C  L  +G   G  W+A+
Sbjct: 153 IQGCCALTGEGLPEGLDWIAS 173

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 91.2 bits (227), Expect = 4e-24
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91
           DLGG  + R +W  Y   V+AIV+++DA+DR +   +K EL  LL   +L  +P+L+LGN
Sbjct: 50  DLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGN 109

Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREI 124
           K D+  A S DE+     L      K  T RE+
Sbjct: 110 KNDLPGALSVDELIEQMNL------KSITDREV 136

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 88.2 bits (219), Expect = 9e-23
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91
           D+GG  + R  WR+YF   D ++++ID++DR RF E+  EL  LL ++ L  VP+L+  N
Sbjct: 65  DIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFAN 124

Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           K D+  AA  +EV             E  +   ++ R   +  CS    +G   G  W+ 
Sbjct: 125 KQDLLTAAPAEEV------------AEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVC 172

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 86.3 bits (214), Expect = 4e-22
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 4   NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 63
           N ++   +PT+    E    G++ FT  D+ G  + R +W  Y+  +  I+F+ID+SDR 
Sbjct: 23  NAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL 82

Query: 64  RFPESKYELDSLL--ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R   +K EL+ LL   D     +PIL   NK+D+ DA +  ++     L           
Sbjct: 83  RMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVKITQLLCL----------- 131

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
            E ++ +P  +F  S L  +G   G  WL  
Sbjct: 132 -ENIKDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 86.3 bits (214), Expect = 4e-22
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 12/151 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           LK+      +PT+    E L +   +  T  D+GG  + R VW+ Y    D +V+++D+S
Sbjct: 19  LKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D +R  ES+ EL  +L ++ +  VP+++L NK D+  A + +E+   F L      K++ 
Sbjct: 79  DEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKL------KKYC 132

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           S     ++P     CS +  +G    FR LA
Sbjct: 133 SDRDWYVQP-----CSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91
           DLGG  + R +W  Y+     ++++ID++DR RF ESK   + ++ ++AL  VP+L+L N
Sbjct: 57  DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116

Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150
           K D+ DA S  E++  F               ++  R   +   S L+ +G   G  WL
Sbjct: 117 KQDLPDALSVAEIKEVFDD----------CIALIGRRDCLVQPVSALEGEGVEEGIEWL 165

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 81.0 bits (200), Expect = 5e-20
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D++D
Sbjct: 29  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD 88

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E++ EL  ++ D  + D  +L+  NK D+ DA    E++   GL           
Sbjct: 89  RDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL----------- 137

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
              ++ R   +         G   G  WL++
Sbjct: 138 -TRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 78.6 bits (194), Expect = 3e-19
 Identities = 37/103 (35%), Positives = 59/103 (57%)

Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++DR R  E++ 
Sbjct: 29  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 88

Query: 71  ELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           EL  +L +D L D  +L+  NK D+ +A S  EV    GL+ L
Sbjct: 89  ELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL 131

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E +   ++ FT  D+GG  + R +WR Y+   + ++F++D++DR R  +++ 
Sbjct: 46  IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDARE 105

Query: 71  ELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
           EL+ +L++D L D  +L+  NK D+ +A S  EV    GL+ +     +           
Sbjct: 106 ELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQG-------- 157

Query: 131 ELFMCSVLKRQGFGNGFRWLANYI 154
               C     QG   G  WL+  I
Sbjct: 158 ----CCATTAQGLYEGLDWLSANI 177

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 77.3 bits (190), Expect = 1e-18
 Identities = 37/112 (33%), Positives = 62/112 (55%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK   +   +PT+    E ++  +I FT  D+GG  + R +WR Y+     ++F++D++D
Sbjct: 33  LKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND 92

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           R R  E++ EL  +L +D L D  IL+  NK D+ DA    E+    GL+ +
Sbjct: 93  RDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSI 144

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 76.9 bits (189), Expect = 2e-18
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 12/144 (8%)

Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++DR R  E++ 
Sbjct: 46  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105

Query: 71  ELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
           EL  +L +D L D  +L+  NK D+ +A +  E+    GL+             L+ R  
Sbjct: 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHW 153

Query: 131 ELFMCSVLKRQGFGNGFRWLANYI 154
            +        +G   G  WL+N I
Sbjct: 154 YIQSTCATSGEGLYEGLDWLSNNI 177

Length = 181

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 76.6 bits (188), Expect = 3e-18
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK D   Q +PT+    E +   ++ FT  D+GG  + R +W+ Y+    A+VF+ID+S 
Sbjct: 19  LKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSH 78

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E+  EL  LL +  L D  +LI  NK D+  A S +E+     L+ L  G+ +  
Sbjct: 79  RDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYI 138

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           +            C      G   G  WL+
Sbjct: 139 QG-----------CDARSGMGLYEGLDWLS 157

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 75.1 bits (185), Expect = 9e-18
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PTL    + L          D+GG    R  WR+YF + DA+++++D+SDR+R  + K E
Sbjct: 44  PTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRE 103

Query: 72  LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
           L  LL ++ L    +LI  NK D+  A S +E+R    L            + ++     
Sbjct: 104 LQKLLVEERLAGATLLIFANKQDLPGALSPEEIREVLEL------------DSIKSHHWR 151

Query: 132 LFMCSVLKRQGFGNGFRWLAN 152
           +F CS +  +   +G  WL +
Sbjct: 152 IFGCSAVTGENLLDGIDWLVD 172

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 68.2 bits (167), Expect = 4e-15
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 10  HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK 69
            +PT    S  +   D +    ++GG    R+ W+ Y      ++F++D++D  R P ++
Sbjct: 28  VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLAR 87

Query: 70  YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
            EL  LL      D+P+++L NK D+  A S  E+     L  +  G+ + 
Sbjct: 88  QELHQLLQHPP--DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWI 136

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 31/94 (32%), Positives = 46/94 (48%)

Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
            PT+  T  +L +        DLGG    R +W +Y+     +VF++D+SD  R  E K 
Sbjct: 28  APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKE 87

Query: 71  ELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104
            L  LL    ++  PIL+L NK D  +A    +V
Sbjct: 88  ILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 27/90 (30%), Positives = 42/90 (46%)

Query: 15  HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS 74
              + E    +I     D  G  + R +  +Y+   + I+ + D++ R    E   E   
Sbjct: 43  PAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLE 102

Query: 75  LLADDALTDVPILILGNKIDIFDAASEDEV 104
            L + A  DVPIL++GNKID+FD  S  E 
Sbjct: 103 ELRELAPDDVPILLVGNKIDLFDEQSSSEE 132

Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 56.3 bits (136), Expect = 9e-11
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 28/152 (18%)

Query: 10  HMPTLHPTSEELSM----GDIVFTTHDLGGHVQARRVW-----RDYFPAVDAIVFIIDAS 60
              T  P      +      +V    D  G  +   +      R      D I+ ++D++
Sbjct: 29  PGTTRDPDVYVKELDKGKVKLVL--VDTPGLDEFGGLGREELARLLLRGADLILLVVDST 86

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR    ++K  +   L  +    +PI+++GNKID+ +    +E+                
Sbjct: 87  DRESEEDAKLLILRRLRKE---GIPIILVGNKIDLLEEREVEELL--------------R 129

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
             E+ ++  + +F  S    +G    F  L  
Sbjct: 130 LEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 30/88 (34%), Positives = 45/88 (51%)

Query: 26  IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85
           + F   D+GG  + R +W+ Y    D IVF++D+ D  R  E+K EL  +        VP
Sbjct: 52  VTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVP 111

Query: 86  ILILGNKIDIFDAASEDEVRHFFGLYGL 113
           +L+L NK D+ +A    EV     L+ L
Sbjct: 112 VLVLANKQDLPNALPVSEVEKLLALHEL 139

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91
              G  + + +W          + ++D+S     P + +  + +    +   +P+++  N
Sbjct: 74  GTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIPVVVAIN 129

Query: 92  KIDIFDAASEDEVR 105
           K D+FDA   +++R
Sbjct: 130 KQDLFDALPPEKIR 143

Length = 187

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIID-ASDRSRFPESKYELDSLLADDALTDVPILILG 90
           D  G      + R Y+ AV++ + + D         E   +    +   A + VPI+++G
Sbjct: 57  DTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVG 116

Query: 91  NKIDIFDAASEDEVRHFF 108
           NKID+ DA  +  V   F
Sbjct: 117 NKIDLRDAKLKTHVAFLF 134

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 20  ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESK 69
           +     + F   D+GG    R+ W   F  V AI+F++  S+           +R  ES 
Sbjct: 162 KFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESL 221

Query: 70  YELDSLLADDALTDVPILILGNKIDIF 96
              + +       + PI++  NK D+F
Sbjct: 222 NLFEEICNSPWFKNTPIILFLNKKDLF 248

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 32  DLGGHVQAR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD------- 83
           D+ GH + R ++      ++ AIVF++D++   +    +   + L   D LTD       
Sbjct: 53  DVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQK--NIRDVAEFLY--DILTDLEKIKNK 108

Query: 84  VPILILGNKIDIFDAASEDEVRH 106
           +PILI  NK D+F A    +++ 
Sbjct: 109 IPILIACNKQDLFTAKPAKKIKE 131

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG0070|consensus	181		100.0
KOG0084|consensus	205		99.98
KOG0071|consensus	180		99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
KOG0092|consensus	200		99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
KOG0073|consensus	185		99.96
KOG0094|consensus	221		99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
KOG0075|consensus	186		99.96
KOG0078|consensus	207		99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.96
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
KOG0072|consensus	182		99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.94
KOG0098|consensus	216		99.94
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.94
KOG0091|consensus	213		99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.94
KOG0079|consensus	198		99.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.94
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.93
KOG0087|consensus	222		99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.93
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.93
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.93
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
KOG0394|consensus	210		99.93
KOG0080|consensus	209		99.93
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.93
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.92
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.92
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.92
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
KOG0086|consensus	214		99.92
KOG0093|consensus	193		99.92
KOG0074|consensus	185		99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
KOG0095|consensus	213		99.92
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.92
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.92
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.91
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.91
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.91
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.91
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.91
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.91
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.91
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.91
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.91
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.91
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.91
KOG0083|consensus	192		99.91
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.91
PLN03110	216	Rab GTPase; Provisional	99.91
KOG0081|consensus	219		99.91
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.91
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.9
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.9
KOG0076|consensus	197		99.9
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.9
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.9
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.9
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.9
PLN03118	211	Rab family protein; Provisional	99.9
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.9
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.89
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.89
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.89
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.89
KOG0077|consensus	193		99.89
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.89
PLN03108	210	Rab family protein; Provisional	99.89
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.89
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.89
KOG0097|consensus	215		99.89
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.88
KOG0088|consensus	218		99.88
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.88
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.88
KOG0393|consensus	198		99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.88
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.88
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.88
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.88
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.87
KOG0395|consensus	196		99.87
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.87
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.86
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.86
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.86
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.85
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.85
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.84
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.83
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.83
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.82
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.81
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.8
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.8
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.78
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.77
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.76
PRK12299	335	obgE GTPase CgtA; Reviewed	99.76
PLN00023	334	GTP-binding protein; Provisional	99.76
PRK15494	339	era GTPase Era; Provisional	99.73
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.73
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.73
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.73
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.73
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.73
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.72
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.72
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.72
cd00881	189	GTP_translation_factor GTP translation factor fami	99.72
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.72
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.71
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.71
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.71
KOG4252|consensus	246		99.7
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.7
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.7
PRK03003	472	GTP-binding protein Der; Reviewed	99.7
KOG0096|consensus	216		99.69
COG2229	187	Predicted GTPase [General function prediction only	99.69
PRK05433	600	GTP-binding protein LepA; Provisional	99.69
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.69
KOG3883|consensus	198		99.68
KOG0090|consensus	238		99.68
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.67
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.67
PRK12296	500	obgE GTPase CgtA; Reviewed	99.66
PRK03003	472	GTP-binding protein Der; Reviewed	99.66
PRK04213	201	GTP-binding protein; Provisional	99.65
COG1100	219	GTPase SAR1 and related small G proteins [General	99.65
PRK12297	424	obgE GTPase CgtA; Reviewed	99.64
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.64
KOG0082|consensus	354		99.64
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.63
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.62
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.61
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.61
PRK11058	426	GTPase HflX; Provisional	99.61
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.61
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.6
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.59
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.59
PRK05306	787	infB translation initiation factor IF-2; Validated	99.59
CHL00189	742	infB translation initiation factor 2; Provisional	99.58
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.58
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.58
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.58
PRK00093	435	GTP-binding protein Der; Reviewed	99.58
KOG1673|consensus	205		99.57
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.57
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.55
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.55
PRK12298	390	obgE GTPase CgtA; Reviewed	99.54
PRK10218	607	GTP-binding protein; Provisional	99.54
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.53
PRK12317	425	elongation factor 1-alpha; Reviewed	99.53
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.53
KOG4423|consensus	229		99.53
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.52
PRK00089	292	era GTPase Era; Reviewed	99.52
KOG0462|consensus	650		99.51
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.5
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.5
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.49
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.49
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.49
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.48
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.48
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.47
PRK00093	435	GTP-binding protein Der; Reviewed	99.47
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.47
COG1159	298	Era GTPase [General function prediction only]	99.46
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.46
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.45
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.43
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.43
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.42
PRK04004	586	translation initiation factor IF-2; Validated	99.4
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.4
COG1160	444	Predicted GTPases [General function prediction onl	99.39
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.39
PRK13351	687	elongation factor G; Reviewed	99.39
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.37
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.37
PRK14845	1049	translation initiation factor IF-2; Provisional	99.35
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.35
KOG1145|consensus	683		99.35
KOG0085|consensus	359		99.33
PRK12736	394	elongation factor Tu; Reviewed	99.33
PLN00043	447	elongation factor 1-alpha; Provisional	99.33
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.33
COG0486	454	ThdF Predicted GTPase [General function prediction	99.33
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.32
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.31
KOG1489|consensus	366		99.31
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.3
COG2262	411	HflX GTPases [General function prediction only]	99.3
PRK12740	668	elongation factor G; Reviewed	99.3
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.3
PRK12735	396	elongation factor Tu; Reviewed	99.28
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.27
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.27
KOG1423|consensus	379		99.27
PTZ00141	446	elongation factor 1- alpha; Provisional	99.26
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.26
PRK13768	253	GTPase; Provisional	99.26
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.25
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.24
COG1160	444	Predicted GTPases [General function prediction onl	99.23
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.23
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.23
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.21
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.21
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.2
PRK09866	741	hypothetical protein; Provisional	99.19
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.18
CHL00071	409	tufA elongation factor Tu	99.17
PRK00049	396	elongation factor Tu; Reviewed	99.16
KOG0099|consensus	379		99.14
PLN03126	478	Elongation factor Tu; Provisional	99.14
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.14
PLN03127	447	Elongation factor Tu; Provisional	99.13
COG1084	346	Predicted GTPase [General function prediction only	99.13
PRK12739	691	elongation factor G; Reviewed	99.12
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.09
KOG1707|consensus	625		99.08
PRK12289	352	GTPase RsgA; Reviewed	99.06
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.04
COG0536	369	Obg Predicted GTPase [General function prediction	99.02
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.0
PRK00007	693	elongation factor G; Reviewed	98.98
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.96
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.94
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.94
PRK12288	347	GTPase RsgA; Reviewed	98.94
PRK00098	298	GTPase RsgA; Reviewed	98.91
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.91
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.9
COG1163	365	DRG Predicted GTPase [General function prediction	98.89
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.86
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.85
KOG0458|consensus	603		98.82
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.75
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.75
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.73
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.72
KOG1144|consensus	1064		98.71
KOG1191|consensus	531		98.71
COG0218	200	Predicted GTPase [General function prediction only	98.69
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.66
PRK07560	731	elongation factor EF-2; Reviewed	98.65
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.62
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.62
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.59
KOG1490|consensus	620		98.55
KOG1532|consensus	366		98.55
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.51
PRK09602	396	translation-associated GTPase; Reviewed	98.51
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.49
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.47
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.47
PRK13796	365	GTPase YqeH; Provisional	98.45
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.44
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.42
KOG3886|consensus	295		98.4
PTZ00416	836	elongation factor 2; Provisional	98.39
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.38
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.35
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.31
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.3
PRK01889	356	GTPase RsgA; Reviewed	98.25
COG3596	296	Predicted GTPase [General function prediction only	98.11
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.08
KOG0461|consensus	522		98.07
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.05
KOG0466|consensus	466		98.02
KOG0468|consensus	971		98.01
KOG0460|consensus	449		97.87
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.83
KOG0459|consensus	501		97.82
KOG0464|consensus	753		97.72
KOG3905|consensus	473		97.68
COG1162	301	Predicted GTPases [General function prediction onl	97.67
KOG0465|consensus	721		97.64
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.62
PTZ00258	390	GTP-binding protein; Provisional	97.62
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.58
KOG1424|consensus	562		97.57
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.51
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.4
KOG0705|consensus	749		97.38
KOG0447|consensus	980		97.37
KOG0410|consensus	410		97.36
KOG1707|consensus	625		97.35
KOG1143|consensus	591		97.26
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.26
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.22
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.18
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.17
KOG2484|consensus	435		97.14
COG1161	322	Predicted GTPases [General function prediction onl	97.09
KOG0467|consensus	887		97.07
KOG3887|consensus	347		96.77
cd03110	179	Fer4_NifH_child This protein family's function is	96.73
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.72
KOG1954|consensus	532		96.62
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.54
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	96.43
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.4
KOG0463|consensus	641		96.31
KOG2423|consensus	572		96.09
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.42
KOG2486|consensus	320		95.42
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.22
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	95.18
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	95.16
KOG0469|consensus	842		94.77
KOG2485|consensus	335		94.73
TIGR00064	272	ftsY signal recognition particle-docking protein F	94.55
PHA02518	211	ParA-like protein; Provisional	94.33
cd03111	106	CpaE_like This protein family consists of proteins	94.17
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	93.91
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	93.57
PRK10416	318	signal recognition particle-docking protein FtsY;	93.48
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	93.4
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	93.18
PRK09601	364	GTP-binding protein YchF; Reviewed	93.14
cd02036	179	MinD Bacterial cell division requires the formatio	93.11
PRK14974	336	cell division protein FtsY; Provisional	93.03
cd03112	158	CobW_like The function of this protein family is u	92.96
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	92.12
KOG0448|consensus	749		91.96
KOG1486|consensus	364		91.82
COG5019	373	CDC3 Septin family protein [Cell division and chro	91.6
cd03114	148	ArgK-like The function of this protein family is u	91.46
cd03115	173	SRP The signal recognition particle (SRP) mediates	90.56
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	89.89
PRK13849	231	putative crown gall tumor protein VirC1; Provision	89.28
KOG1487|consensus	358		89.19
KOG0780|consensus	483		89.03
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	88.79
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	88.6
cd02032	267	Bchl_like This family of proteins contains bchL an	87.82
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	87.8
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	87.76
COG0523	323	Putative GTPases (G3E family) [General function pr	87.47
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	86.29
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	85.85
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	85.05
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	84.03
CHL00175	281	minD septum-site determining protein; Validated	83.58
cd02117	212	NifH_like This family contains the NifH (iron prot	83.21
KOG2655|consensus	366		82.67
COG1149	284	MinD superfamily P-loop ATPase containing an inser	82.04
KOG1547|consensus	336		81.97
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	81.94
PRK00771	437	signal recognition particle protein Srp54; Provisi	81.82
PRK10818	270	cell division inhibitor MinD; Provisional	81.37
TIGR00959	428	ffh signal recognition particle protein. This mode	81.29
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	81.24
CHL00072	290	chlL photochlorophyllide reductase subunit L	80.75
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	80.74
COG3523	1188	IcmF Type VI protein secretion system component Va	80.28

>KOG0070|consensus

Probab=100.00  E-value=3.2e-32  Score=181.91  Aligned_cols=142  Identities=32%  Similarity=0.597  Sum_probs=134.4

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |||-+++..+.||+|+++..+++++++|++||.+||.++++.|++|+++.+++|||+|+++.+.+.+++..+..++.+..
T Consensus        36 kLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~  115 (181)
T KOG0070|consen   36 KLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE  115 (181)
T ss_pred             eeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+.|+++.+||.|+++..+..++...+.+            .++..+.|++..|||.+|+|+.|.++|+.+.+
T Consensus       116 l~~~~llv~aNKqD~~~als~~ei~~~L~l------------~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~  177 (181)
T KOG0070|consen  116 LRNAPLLVFANKQDLPGALSAAEITNKLGL------------HSLRSRNWHIQSTCAISGEGLYEGLDWLSNNL  177 (181)
T ss_pred             cCCceEEEEechhhccccCCHHHHHhHhhh------------hccCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence            889999999999999999999999999988            34677899999999999999999999998765

>KOG0084|consensus

Probab=99.98  E-value=9.6e-32  Score=181.00  Aligned_cols=136  Identities=21%  Similarity=0.336  Sum_probs=118.7

Q ss_pred             CCCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           1 MLKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         1 ~l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      |+++|.+ +.|..|+|+.  +++++++|  +++++|||+||++|+....+||++|+|||+|||+++.++|..+..|+.++
T Consensus        28 Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei  107 (205)
T KOG0084|consen   28 RFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI  107 (205)
T ss_pred             hhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh
Confidence            6788885 6889999985  88888887  89999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEE-EEEeeeccCCChHHHHHHHHh
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE-LFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      -++ ...++|.+||+||+|+.+  .++.++...+...                 .+++ ++++|||++.|++++|..|+.
T Consensus       108 ~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~-----------------~~~~~f~ETSAK~~~NVe~~F~~la~  169 (205)
T KOG0084|consen  108 DRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE-----------------LGIPIFLETSAKDSTNVEDAFLTLAK  169 (205)
T ss_pred             hhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHh-----------------cCCcceeecccCCccCHHHHHHHHHH
Confidence            654 446789999999999987  5677777666665                 3445 999999999999999999886


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       170 ~l  171 (205)
T KOG0084|consen  170 EL  171 (205)
T ss_pred             HH
Confidence            54

>KOG0071|consensus

Probab=99.97  E-value=1e-30  Score=167.18  Aligned_cols=142  Identities=29%  Similarity=0.561  Sum_probs=134.0

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      +||-++...+.||+|++++++.+++++|++||.+|++..+++|++||.++.++|||+|+.+.+..++++..+..+++++.
T Consensus        36 KLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~e  115 (180)
T KOG0071|consen   36 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDRE  115 (180)
T ss_pred             HHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHh
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++.+||.|+++..+++++..++++.            .+..++|-+.++||.+|.|+.|.+.||.+.+
T Consensus       116 m~~~~~LvlANkQDlp~A~~pqei~d~leLe------------~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  116 MRDAIILILANKQDLPDAMKPQEIQDKLELE------------RIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             hhcceEEEEecCcccccccCHHHHHHHhccc------------cccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            9999999999999999999999999999984            3677889999999999999999999998754

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=6.7e-30  Score=175.91  Aligned_cols=142  Identities=31%  Similarity=0.565  Sum_probs=122.3

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |+..+++..+.||+|++...++.+++++++||+||+++++.+|..|++++|++|+|+|++++.++..+..++..+++...
T Consensus        36 ~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~  115 (181)
T PLN00223         36 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE  115 (181)
T ss_pred             HHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHh
Confidence            35567777889999999888888899999999999999999999999999999999999999999998888888876555


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+....+++...++..            ....+.+.+++|||++|+|+.++|+||.+.+
T Consensus       116 ~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~------------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             hCCCCEEEEEECCCCCCCCCHHHHHHHhCcc------------ccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence            5689999999999998877777877777652            1233566788999999999999999998764

>KOG0092|consensus

Probab=99.97  E-value=1.6e-30  Score=174.47  Aligned_cols=137  Identities=18%  Similarity=0.325  Sum_probs=121.2

Q ss_pred             CCCCCCCCc-ccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           1 MLKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         1 ~l~~~~~~~-~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      |+..|++.. ..||+|..  ..++.+++  ++|++|||+||++|+++.+.||++|+++|+|||+++.+||..++.|+.++
T Consensus        24 Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL  103 (200)
T KOG0092|consen   24 RFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKEL  103 (200)
T ss_pred             hhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHH
Confidence            456677766 48999975  67777776  89999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..... ++.-+.|||||+||.+  ++..++...+.+..                 ++.|+++|||+|.|++++|..+.+.
T Consensus       104 ~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~-----------------gll~~ETSAKTg~Nv~~if~~Ia~~  165 (200)
T KOG0092|consen  104 QRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQ-----------------GLLFFETSAKTGENVNEIFQAIAEK  165 (200)
T ss_pred             HhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhc-----------------CCEEEEEecccccCHHHHHHHHHHh
Confidence            76554 7788899999999987  78888888888774                 4689999999999999999999987


Q ss_pred             cC
Q psy2161         154 ID  155 (155)
Q Consensus       154 i~  155 (155)
                      ++
T Consensus       166 lp  167 (200)
T KOG0092|consen  166 LP  167 (200)
T ss_pred             cc
Confidence            75

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.7e-29  Score=171.99  Aligned_cols=141  Identities=26%  Similarity=0.540  Sum_probs=120.2

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||..+++..+.||+|.....+...++++++|||||+++++..|..++++||++++|+|++++.++++...|+.++++...
T Consensus        28 ~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~  107 (168)
T cd04149          28 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDRE  107 (168)
T ss_pred             HHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHh
Confidence            45667777889999998878888889999999999999999999999999999999999999999999888888876544


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..++|+++|+||+|+.+....+++.+.++..            ......+.+++|||++|.|++++|+||.++
T Consensus       108 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~SAk~g~gv~~~~~~l~~~  168 (168)
T cd04149         108 MRDALLLVFANKQDLPDAMKPHEIQEKLGLT------------RIRDRNWYVQPSCATSGDGLYEGLTWLSSN  168 (168)
T ss_pred             hcCCcEEEEEECcCCccCCCHHHHHHHcCCC------------ccCCCcEEEEEeeCCCCCChHHHHHHHhcC
Confidence            5678999999999997766777887776542            123345789999999999999999999763

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.9e-29  Score=171.84  Aligned_cols=142  Identities=30%  Similarity=0.567  Sum_probs=121.3

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |+..|++..+.||+|.....+..+++++++|||||+.+++..|..|+++||++++|+|++++.+++....|+..+++...
T Consensus        32 ~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~  111 (175)
T smart00177       32 KLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE  111 (175)
T ss_pred             HHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh
Confidence            45567777889999998878888889999999999999999999999999999999999999999999999988876544


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++|+++|+||+|+.+..+..++...++..            .+..+.+.++++||++|.|++++|+||.+.+
T Consensus       112 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      112 LRDAVILVFANKQDLPDAMKAAEITEKLGLH------------SIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             hcCCcEEEEEeCcCcccCCCHHHHHHHhCcc------------ccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            4678999999999998766777777766652            2334567788999999999999999998754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=4.2e-29  Score=168.57  Aligned_cols=140  Identities=32%  Similarity=0.571  Sum_probs=117.4

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |++.+++..+.||+|++...+..+++++.+||+||+.++...|..++++||+++||+|++++.++..+..|+..+++...
T Consensus        19 ~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~   98 (159)
T cd04150          19 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDE   98 (159)
T ss_pred             HHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHH
Confidence            35567777889999998878888889999999999999999999999999999999999999999999888888875544


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..+.|+++++||+|+.+.....++...+...            .+..+.+.+++|||++|.|++++|+||.+
T Consensus        99 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          99 LRDAVLLVFANKQDLPNAMSAAEVTDKLGLH------------SLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             hcCCCEEEEEECCCCCCCCCHHHHHHHhCcc------------ccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            4568999999999997655566666655431            13345678899999999999999999975

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=1e-29  Score=174.13  Aligned_cols=141  Identities=41%  Similarity=0.739  Sum_probs=128.2

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |+.+....+.||.|++...+.++++++.+||.||+..+++.|+.|+++++++|||+|+++++.+.+++..+.+++++...
T Consensus        34 l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~  113 (175)
T PF00025_consen   34 LKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPEL  113 (175)
T ss_dssp             HHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGG
T ss_pred             hhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhc
Confidence            45566677999999999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++++||+|+.+..+..++...+...            .+. .+.+.++.|||++|.|+.|.++||.+++
T Consensus       114 ~~~piLIl~NK~D~~~~~~~~~i~~~l~l~------------~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  114 KDIPILILANKQDLPDAMSEEEIKEYLGLE------------KLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTSEEEEEEESTTSTTSSTHHHHHHHTTGG------------GTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             ccceEEEEeccccccCcchhhHHHhhhhhh------------hcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            789999999999999888999999988873            233 6789999999999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073|consensus

Probab=99.96  E-value=7.4e-29  Score=162.38  Aligned_cols=141  Identities=30%  Similarity=0.550  Sum_probs=127.5

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |-+.....+.||.|++++++.++++++++||.+||...+++|+.||..+|++|+|+|++++.++++....+.+++.....
T Consensus        36 l~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerl  115 (185)
T KOG0073|consen   36 LLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERL  115 (185)
T ss_pred             hcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhh
Confidence            34455677889999999999999999999999999999999999999999999999999999999999999999987778


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc-cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++++||.|+.+..+.+++...+++.            ++ ....|..+.|||.+|+++.+.++||++.+
T Consensus       116 aG~~~Lvlank~dl~~~l~~~~i~~~~~L~------------~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l  177 (185)
T KOG0073|consen  116 AGAPLLVLANKQDLPGALSLEEISKALDLE------------ELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDL  177 (185)
T ss_pred             cCCceEEEEecCcCccccCHHHHHHhhCHH------------HhccccCceEEEEeccccccHHHHHHHHHHHH
Confidence            889999999999999888888888877763            23 56789999999999999999999998754

>KOG0094|consensus

Probab=99.96  E-value=5.1e-29  Score=167.58  Aligned_cols=135  Identities=21%  Similarity=0.268  Sum_probs=114.2

Q ss_pred             CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .+.+ ..|.||+|+.  ..++.+.+  ++|++|||+||++|+.+.+.|++++.++|+|||+++.++|+....|++++.+.
T Consensus        44 yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e  123 (221)
T KOG0094|consen   44 YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRE  123 (221)
T ss_pred             HhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhc
Confidence            3443 4789999985  77787766  89999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +...++-++|||||.||.+  +++.++-......                 .+..|+++||+.|.||.++|..++..++
T Consensus       124 ~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke-----------------l~a~f~etsak~g~NVk~lFrrIaa~l~  185 (221)
T KOG0094|consen  124 RGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE-----------------LNAEFIETSAKAGENVKQLFRRIAAALP  185 (221)
T ss_pred             cCCCceEEEEEcccccccchhhhhHHHHHHHHHH-----------------hCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence            8877799999999999987  3344333332222                 3458999999999999999999887654

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.6e-28  Score=168.14  Aligned_cols=142  Identities=30%  Similarity=0.583  Sum_probs=119.8

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |+..+++..+.||.|.+...++.+++++++|||||++.++..|..|++++|++|+|+|+++++++.....++..+++...
T Consensus        36 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~  115 (182)
T PTZ00133         36 KLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDE  115 (182)
T ss_pred             HHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh
Confidence            34567777789999998888888889999999999999999999999999999999999999999998888888876544


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++|+++|+||.|+.+.....++...++..            .+....+.++++||++|.|++++|+||.+.+
T Consensus       116 ~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        116 LRDAVLLVFANKQDLPNAMSTTEVTEKLGLH------------SVRQRNWYIQGCCATTAQGLYEGLDWLSANI  177 (182)
T ss_pred             hcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC------------cccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence            4578999999999997766667776666551            2334567788999999999999999998754

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=3.1e-28  Score=165.81  Aligned_cols=143  Identities=31%  Similarity=0.544  Sum_probs=120.7

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||.++.+..+.||+|.....++++++++.+|||||+..++..|..+++++|++++|+|++++.+++++..|+..+++...
T Consensus        18 ~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~   97 (169)
T cd04158          18 KLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE   97 (169)
T ss_pred             HHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh
Confidence            35667777899999998888888899999999999999999999999999999999999999999999999999986555


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+..+.+++.+.+.....           .....+.+++|||++|.|++++|+||.+.+
T Consensus        98 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          98 LRDALLLIFANKQDVAGALSVEEMTELLSLHKL-----------CCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             hCCCCEEEEEeCcCcccCCCHHHHHHHhCCccc-----------cCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            566899999999999776777777776654210           112356789999999999999999998764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0075|consensus

Probab=99.96  E-value=4.1e-28  Score=156.41  Aligned_cols=135  Identities=30%  Similarity=0.534  Sum_probs=128.0

Q ss_pred             CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161           7 TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus         7 ~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      .+...||+|++++.+.-+++++.+||.|||+.|+++|..|++++++++||+|+++++.++..+..+..++..+.+.++|+
T Consensus        46 ~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~  125 (186)
T KOG0075|consen   46 LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPL  125 (186)
T ss_pred             hhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcE
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ++++||.|++++.+...+...+++            .++..+.+-++.+|+++..|++-+.+||.+.
T Consensus       126 LVLGnK~d~~~AL~~~~li~rmgL------------~sitdREvcC~siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  126 LVLGNKIDLPGALSKIALIERMGL------------SSITDREVCCFSISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             EEecccccCcccccHHHHHHHhCc------------cccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence            999999999999999999999998            5678888999999999999999999999875

>KOG0078|consensus

Probab=99.96  E-value=2e-28  Score=166.94  Aligned_cols=135  Identities=18%  Similarity=0.275  Sum_probs=116.9

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ ..+..|+|+.  .++++.++  +++++|||+||++|+.+...||++|+++++|||+++..+|+.+..|+..+.
T Consensus        32 f~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~  111 (207)
T KOG0078|consen   32 FSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNID  111 (207)
T ss_pred             hhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHH
Confidence            445554 4778899985  78888887  899999999999999999999999999999999999999999999999996


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+. ..++|.+|||||+|+.+  .++.+.-.+....                 .++.++|+|||+|.||+++|..|++.+
T Consensus       112 e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e-----------------~G~~F~EtSAk~~~NI~eaF~~La~~i  173 (207)
T KOG0078|consen  112 EHA-SDDVVKILVGNKCDLEEKRQVSKERGEALARE-----------------YGIKFFETSAKTNFNIEEAFLSLARDI  173 (207)
T ss_pred             hhC-CCCCcEEEeeccccccccccccHHHHHHHHHH-----------------hCCeEEEccccCCCCHHHHHHHHHHHH
Confidence            554 45899999999999987  6777776666665                 457999999999999999999998754

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=2.2e-27  Score=161.38  Aligned_cols=142  Identities=28%  Similarity=0.464  Sum_probs=119.5

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |+++....+.||+|++...+..+++++++||+||+..++.+|..|+++||++++|+|++++.+++.+..|+..+++....
T Consensus        19 l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~   98 (167)
T cd04161          19 LQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRV   98 (167)
T ss_pred             HhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccc
Confidence            44444567899999998889999999999999999999999999999999999999999999999999999999876555


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC------CChHHHHHHHHh
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR------QGFGNGFRWLAN  152 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~------~~i~~~~~~l~~  152 (155)
                      .++|+++|+||+|+.+..+..++.+.+....+         .......+.+++|||++|      .|+.+.|+||.+
T Consensus        99 ~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~---------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161          99 SGKPILVLANKQDKKNALLGADVIEYLSLEKL---------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             cCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc---------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            68999999999999887777788777665211         000123578899999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04120 Rab12 Rab12 subfamily

Probab=99.96  E-value=8.6e-28  Score=167.82  Aligned_cols=136  Identities=15%  Similarity=0.217  Sum_probs=109.2

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +..+.+ ..+.||+|..  ...+.+++  +++++|||+|+++|+.+|..|+++||++|+|||++++.+|+.+..|+..+.
T Consensus        20 ~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~   99 (202)
T cd04120          20 FTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID   99 (202)
T ss_pred             HHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            456665 4577998764  56778877  899999999999999999999999999999999999999999999998764


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +. ...+.|+++|+||+|+.+  .+...+..+.....                .++.+++|||++|.|++++|+++++.+
T Consensus       100 ~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~----------------~~~~~~etSAktg~gV~e~F~~l~~~~  162 (202)
T cd04120         100 KY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQI----------------TGMRFCEASAKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             Hh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            33 345799999999999864  34444444333220                246799999999999999999998753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=2.5e-27  Score=163.98  Aligned_cols=134  Identities=15%  Similarity=0.268  Sum_probs=110.9

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ ..+.||.+..  ...+.+++  +++++|||+|++.|..++..++++||++++|||++++.+|+.+..|+.++.
T Consensus        26 ~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~  105 (189)
T cd04121          26 LQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEID  105 (189)
T ss_pred             HHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            344554 4566787774  45666776  899999999999999999999999999999999999999999999999996


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...  ++.|++||+||.|+..  .++.+++......                 .++.+++|||++|.|++++|+++++.+
T Consensus       106 ~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----------------~~~~~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         106 EHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER-----------------NGMTFFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             HhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            543  5799999999999965  4566666665544                 456899999999999999999998753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=6.2e-27  Score=160.12  Aligned_cols=140  Identities=29%  Similarity=0.560  Sum_probs=119.1

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||..+++..+.||.|.+...+.++++++.+||+||+..+...|..+++++|++++|+|+++++++.....++..++++..
T Consensus        34 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~  113 (174)
T cd04153          34 QFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED  113 (174)
T ss_pred             HHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh
Confidence            35667777789999999888898999999999999999999999999999999999999999899888888888876655


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..++|+++++||+|+.+..+.+++...+...            .....++.+++|||++|.|++++|+||.+
T Consensus       114 ~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         114 LRKAVLLVLANKQDLKGAMTPAEISESLGLT------------SIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             hcCCCEEEEEECCCCCCCCCHHHHHHHhCcc------------cccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            5679999999999997766666766665531            12335678999999999999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=3.5e-27  Score=161.58  Aligned_cols=129  Identities=18%  Similarity=0.209  Sum_probs=106.7

Q ss_pred             CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      +.+.||+|...  ..+.+++  +++.||||||++++..++..|+++||++|+|||++++.+|+.+..|+..++... ..+
T Consensus         7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~   85 (176)
T PTZ00099          7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKD   85 (176)
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            56899999863  4566665  899999999999999999999999999999999999999999999999987653 256


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+...+.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus        86 ~piilVgNK~DL~~~~~v~~~e~~~~~~~-----------------~~~~~~e~SAk~g~nV~~lf~~l~~~l  141 (176)
T PTZ00099         86 VIIALVGNKTDLGDLRKVTYEEGMQKAQE-----------------YNTMFHETSAKAGHNIKVLFKKIAAKL  141 (176)
T ss_pred             CeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999864  3444444443332                 345789999999999999999999765

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=9.3e-27  Score=159.00  Aligned_cols=139  Identities=32%  Similarity=0.557  Sum_probs=117.2

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++....+.||+|+....+.++++++.+|||||++.++.+|..+++++|++++|+|++++.++.....|+..+++....
T Consensus        34 l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  113 (173)
T cd04154          34 LLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERL  113 (173)
T ss_pred             HccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh
Confidence            44556677889999888888888999999999999999999999999999999999999999999888888888765445


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      .++|+++|+||+|+.+....+++...+...            ......+++++|||++|.|++++|+|+.+
T Consensus       114 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         114 AGATLLILANKQDLPGALSEEEIREALELD------------KISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             cCCCEEEEEECcccccCCCHHHHHHHhCcc------------ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            689999999999997765666666666541            12335678999999999999999999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=1.8e-26  Score=155.53  Aligned_cols=140  Identities=31%  Similarity=0.604  Sum_probs=113.4

Q ss_pred             CCCCC--CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           2 LKNDR--TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         2 l~~~~--~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      |.++.  ...+.||+|.....+..+++++++|||||+.+++..|..+++++|++++|+|++++.++.....|+..+++..
T Consensus        19 l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~   98 (162)
T cd04157          19 LKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHP   98 (162)
T ss_pred             HcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCc
Confidence            44543  4568899998877788888999999999999999999999999999999999999999988888888887643


Q ss_pred             C--CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          80 A--LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        80 ~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .  ..++|+++|+||+|+.+.....++...+...            ......+.++++||++|.|++++|+||.++
T Consensus        99 ~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~  162 (162)
T cd04157          99 DIKHRRVPILFFANKMDLPDALTAVKITQLLGLE------------NIKDKPWHIFASNALTGEGLDEGVQWLQAQ  162 (162)
T ss_pred             ccccCCCCEEEEEeCccccCCCCHHHHHHHhCCc------------cccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence            2  2479999999999997655555555555431            112345679999999999999999999764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.3e-26  Score=154.79  Aligned_cols=139  Identities=32%  Similarity=0.614  Sum_probs=112.6

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |..+....+.||++.+...++..+.++++|||||+..++..|..+++++|++++|+|++++.++.....++..+++....
T Consensus        19 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~   98 (158)
T cd04151          19 LQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL   98 (158)
T ss_pred             HccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh
Confidence            55666777889999988888888899999999999999999999999999999999999887787776777666554444


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      .++|+++|+||+|+.+.....++...+...            .....++++++|||++|.|++++|++|++
T Consensus        99 ~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          99 KGAVLLVFANKQDMPGALSEAEISEKLGLS------------ELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             cCCcEEEEEeCCCCCCCCCHHHHHHHhCcc------------ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            579999999999997654455555544331            12234568999999999999999999976

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=2e-26  Score=159.02  Aligned_cols=148  Identities=62%  Similarity=1.060  Sum_probs=122.8

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      +.++.+..+.||.+++...+.++++++.+||+||+..++..|..+++++|++++|+|++++.++.....++..+++....
T Consensus        37 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~  116 (184)
T smart00178       37 LKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEEL  116 (184)
T ss_pred             HhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhh
Confidence            45566667889999998888889999999999999999999999999999999999999999998888888888765555


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+....+.+++.+.++......     .......+.+.+++|||++|.|++++++||.+.+
T Consensus       117 ~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~-----~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      117 ATVPFLILGNKIDAPYAASEDELRYALGLTNTTG-----SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             cCCCEEEEEeCccccCCCCHHHHHHHcCCCcccc-----cccccCCceeEEEEeecccCCChHHHHHHHHhhC
Confidence            6899999999999987788888988887632100     0001123577899999999999999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=9.6e-27  Score=162.33  Aligned_cols=133  Identities=18%  Similarity=0.315  Sum_probs=106.9

Q ss_pred             CCCCCCC-cccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~~-~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +..+.+. .+.||+|...  ..+.+++  +++++|||+|+++|+.++..|+++++++|+|||++++.+|..+..|+.++.
T Consensus        15 ~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~   94 (200)
T smart00176       15 HLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLV   94 (200)
T ss_pred             HhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence            4556654 6889999764  3444444  899999999999999999999999999999999999999999999999997


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +..  .+.|+++|+||+|+.. .+..+.+ ...                 ...++.+++|||++|.||.++|+||.+.+
T Consensus        95 ~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----------------~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       95 RVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFH-----------------RKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HhC--CCCCEEEEEECcccccccCCHHHH-HHH-----------------HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            543  5799999999999865 2232222 221                 12457899999999999999999998754

Ran is involved in the active transport of proteins through nuclear pores.

>cd01875 RhoG RhoG subfamily

Probab=99.95  E-value=9.4e-27  Score=161.51  Aligned_cols=148  Identities=16%  Similarity=0.247  Sum_probs=105.1

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      +..|.+ ..+.||+|.. ...+.+++  +.+++|||+|+++|+.+++.|+++||++|+|||++++.+|+.+. .|+..+.
T Consensus        23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~  102 (191)
T cd01875          23 YTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVC  102 (191)
T ss_pred             HHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            455665 6789999875 33455655  88999999999999999999999999999999999999999996 5877775


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  ..+.|+++|+||.|+.+.....+..........+..++.   ......+ +.+++|||++|.|++++|+++++.+
T Consensus       103 ~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~---~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         103 HH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG---ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             hh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH---HHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            43  247999999999999653211111111110000000000   0011123 6899999999999999999998753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=7.7e-27  Score=159.90  Aligned_cols=134  Identities=17%  Similarity=0.247  Sum_probs=107.9

Q ss_pred             CCCCCCCC-cccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHH
Q psy2161           1 MLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSL   75 (155)
Q Consensus         1 ~l~~~~~~-~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~   75 (155)
                      |+.+|++. ++.||+|.. ...+..++  +++++|||+|+++++.++..++++|+++|+|||++++.+|+.+ ..|+.++
T Consensus        20 ~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i   99 (176)
T cd04133          20 CYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPEL   99 (176)
T ss_pred             HHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHH
Confidence            35567764 689999875 34566666  8999999999999999999999999999999999999999998 6899988


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCc------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCC
Q psy2161          76 LADDALTDVPILILGNKIDIFDA------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQG  142 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  142 (155)
                      .+..  .+.|+++|+||+|+.+.            +..++.......                 .+. .+++|||++|.|
T Consensus       100 ~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~-----------------~~~~~~~E~SAk~~~n  160 (176)
T cd04133         100 RHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ-----------------IGAAAYIECSSKTQQN  160 (176)
T ss_pred             HHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-----------------cCCCEEEECCCCcccC
Confidence            6543  47999999999999642            333343333332                 334 699999999999


Q ss_pred             hHHHHHHHHhh
Q psy2161         143 FGNGFRWLANY  153 (155)
Q Consensus       143 i~~~~~~l~~~  153 (155)
                      ++++|+.+++.
T Consensus       161 V~~~F~~~~~~  171 (176)
T cd04133         161 VKAVFDAAIKV  171 (176)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0072|consensus

Probab=99.95  E-value=5.1e-27  Score=150.88  Aligned_cols=142  Identities=29%  Similarity=0.531  Sum_probs=129.4

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |++-|+...+.||+|++.+++.+++.++++||.+|+-+.+++|+-||.+.|++|||+|.++..........+-.++.+..
T Consensus        37 rlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~e  116 (182)
T KOG0072|consen   37 RLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEE  116 (182)
T ss_pred             EcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHh
Confidence            57778999999999999999999999999999999999999999999999999999999999888888888888888888


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+..+++++||.|........++...++.            ..++.+.+.++++||.+|.|++++.+||.+.+
T Consensus       117 Lq~a~llv~anKqD~~~~~t~~E~~~~L~l------------~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l  178 (182)
T KOG0072|consen  117 LQHAKLLVFANKQDYSGALTRSEVLKMLGL------------QKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPL  178 (182)
T ss_pred             hcCceEEEEeccccchhhhhHHHHHHHhCh------------HHHhhheeEEEeeccccccCCcHHHHHHHHHH
Confidence            888999999999999888888888888877            33566779999999999999999999998764

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=9.3e-26  Score=156.10  Aligned_cols=152  Identities=64%  Similarity=1.126  Sum_probs=122.6

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.+++...+.||.++....+.+++..+.+||+||+..++..|..++++++++++|+|+++..++.....++..+++....
T Consensus        39 l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~  118 (190)
T cd00879          39 LKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEEL  118 (190)
T ss_pred             HhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccc
Confidence            45566778899999998899999999999999999999999999999999999999999988898888888888765555


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++++||+|+......+++...++.......+.... .......+.+++|||++|.|++++|+||.+.+
T Consensus       119 ~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         119 ANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL-KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             cCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc-cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence            6799999999999987777888888776532211110000 01122457899999999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.94  E-value=4.5e-26  Score=155.66  Aligned_cols=136  Identities=18%  Similarity=0.289  Sum_probs=108.9

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +..+++ ..+.||++.. ...+.+++  +.+++|||||+..++.++..+++++|++++|||++++.+|+.+..|+..+..
T Consensus        22 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~  101 (172)
T cd04141          22 FISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITR  101 (172)
T ss_pred             HHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHH
Confidence            445665 4688999875 34567766  7899999999999999999999999999999999999999999888776654


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....+.|+++|+||+|+.+  .++.++.......                 .++++++|||++|.|++++|+||.+.+
T Consensus       102 ~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~  163 (172)
T cd04141         102 VRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-----------------FNCPFFETSAALRHYIDDAFHGLVREI  163 (172)
T ss_pred             hcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-----------------hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence            33345799999999999865  3444444443332                 356899999999999999999998653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0098|consensus

Probab=99.94  E-value=1.6e-26  Score=154.49  Aligned_cols=134  Identities=19%  Similarity=0.254  Sum_probs=115.9

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      ++++++ ..+..|+|+.  .+.+++++  +++++|||+|+++|++....||++|.++++|||+++.++|..+..||.++.
T Consensus        26 f~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~r  105 (216)
T KOG0098|consen   26 FTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDAR  105 (216)
T ss_pred             HhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHH
Confidence            455664 4667899986  67777766  899999999999999999999999999999999999999999999999997


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+. .++..++|++||+||..  .++.++-..+.+.                 ..+.+.++||+++.|++|+|...+..
T Consensus       106 q~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-----------------hgLifmETSakt~~~VEEaF~nta~~  166 (216)
T KOG0098|consen  106 QHS-NENMVIMLIGNKSDLEARREVSKEEGEAFARE-----------------HGLIFMETSAKTAENVEEAFINTAKE  166 (216)
T ss_pred             Hhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHH-----------------cCceeehhhhhhhhhHHHHHHHHHHH
Confidence            664 46899999999999965  6788888777766                 55678899999999999999887654

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=1.5e-25  Score=150.86  Aligned_cols=140  Identities=31%  Similarity=0.551  Sum_probs=114.8

Q ss_pred             CCCCCCCcccCCCCCceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      +.++++..+.||.|.....+..++ +.+.+||+||+..+...|..+++++|++++|+|++++.++.....|+..+++...
T Consensus        19 ~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T cd04156          19 LKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEH   98 (160)
T ss_pred             HhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh
Confidence            456666677899998877777654 8999999999999999999999999999999999999889999899988876655


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..+.|+++|+||+|+.......++...+....           .....++++++|||++|.|++++|++|.+
T Consensus        99 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          99 IKGVPVVLLANKQDLPGALTAEEITRRFKLKK-----------YCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             hcCCCEEEEEECcccccCcCHHHHHHHcCCcc-----------cCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            56899999999999976556666665544311           11224678999999999999999999875

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.94  E-value=6.5e-26  Score=156.13  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=106.0

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~   76 (155)
                      +..+.+ ..+.||++.. ...+.+++  +++++|||+|++.|..+++.++++||++++|||++++.+|+.+ ..|+..+.
T Consensus        25 ~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~  104 (182)
T cd04172          25 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ  104 (182)
T ss_pred             HHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            445554 5788999875 45566666  7899999999999999999999999999999999999999997 78998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCC
Q psy2161          77 ADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQ  141 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  141 (155)
                      ...  ++.|++||+||+|+.+.              ++.++..+....                 .+ +.|++|||++|.
T Consensus       105 ~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~-----------------~~~~~~~E~SAk~~~  165 (182)
T cd04172         105 EFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ-----------------IGAATYIECSALQSE  165 (182)
T ss_pred             HHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH-----------------cCCCEEEECCcCCCC
Confidence            543  57899999999998641              333444443332                 34 489999999999


Q ss_pred             C-hHHHHHHHHh
Q psy2161         142 G-FGNGFRWLAN  152 (155)
Q Consensus       142 ~-i~~~~~~l~~  152 (155)
                      | ++++|+.+.+
T Consensus       166 n~v~~~F~~~~~  177 (182)
T cd04172         166 NSVRDIFHVATL  177 (182)
T ss_pred             CCHHHHHHHHHH
Confidence            8 9999998876

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0091|consensus

Probab=99.94  E-value=2.6e-26  Score=150.64  Aligned_cols=136  Identities=15%  Similarity=0.258  Sum_probs=111.5

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      ++.|.+ +.-.||+|+.  -+-++.. |  +++++|||+||++|++..+.||+++-++++|||.++..+|+.+..|+.+.
T Consensus        28 ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea  107 (213)
T KOG0091|consen   28 FTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEA  107 (213)
T ss_pred             HhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHH
Confidence            356664 4557999985  3344442 3  89999999999999999999999999999999999999999999999988


Q ss_pred             HhCCC-CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          76 LADDA-LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        76 ~~~~~-~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      .-+.. ...+-++||++|+||..  +++.++.......                 .++.++++||++|.|++|.|+.+.+
T Consensus       108 ~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-----------------hgM~FVETSak~g~NVeEAF~mlaq  170 (213)
T KOG0091|consen  108 AMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-----------------HGMAFVETSAKNGCNVEEAFDMLAQ  170 (213)
T ss_pred             HHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----------------cCceEEEecccCCCcHHHHHHHHHH
Confidence            75544 33456788999999976  6777776665544                 6789999999999999999999987


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       171 eI  172 (213)
T KOG0091|consen  171 EI  172 (213)
T ss_pred             HH
Confidence            54

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=1.8e-25  Score=151.54  Aligned_cols=138  Identities=25%  Similarity=0.425  Sum_probs=113.1

Q ss_pred             CCCCC-CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           2 LKNDR-TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      +.++. ...+.||+|+....+..+++++.+||+||+..++.+|..++++||++++|+|++++.++...+.|+.++.... 
T Consensus        19 ~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-   97 (164)
T cd04162          19 LSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-   97 (164)
T ss_pred             HhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-
Confidence            44554 4578899999877777788999999999999999999999999999999999999999999999998886443 


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc------CCChHHHHHHHHh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK------RQGFGNGFRWLAN  152 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~  152 (155)
                       .++|+++|+||+|+.+.....++...++...+           ....++.+++|||++      ++|+.++|+.+..
T Consensus        98 -~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162          98 -PDLPLVVLANKQDLPAARSVQEIHKELELEPI-----------ARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             -CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh-----------cCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence             57999999999999776666666665554211           233567888888888      9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=3.9e-25  Score=149.81  Aligned_cols=137  Identities=34%  Similarity=0.598  Sum_probs=115.8

Q ss_pred             CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161           7 TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus         7 ~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ...+.||++.+...+.+++.++++|||||++.+...+..+++++|++++|+|++++.++.....|+..+++.....+.|+
T Consensus        31 ~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (167)
T cd04160          31 PSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPL  110 (167)
T ss_pred             ccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCE
Confidence            35678999999989999999999999999999999999999999999999999998888888889988877655568999


Q ss_pred             EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ++++||+|+.......++...+....          .......++++++||++|.|++++++||+++
T Consensus       111 ilv~NK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  167 (167)
T cd04160         111 LILANKQDLPDALSVEEIKEVFQDKA----------EEIGRRDCLVLPVSALEGTGVREGIEWLVER  167 (167)
T ss_pred             EEEEEccccccCCCHHHHHHHhcccc----------ccccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence            99999999977666667766655421          1123346789999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.94  E-value=3.6e-25  Score=152.61  Aligned_cols=142  Identities=29%  Similarity=0.468  Sum_probs=112.1

Q ss_pred             CCCCCCCcccCCCCCceeEEEE-----CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSM-----GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~-----~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +..+++..+.||.|.....+.+     .++++++|||||++++..+|..++++||++++|+|++++.+++.+..|+.++.
T Consensus        23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~  102 (183)
T cd04152          23 LKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT  102 (183)
T ss_pred             HhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            4455666678999987655544     34899999999999999999999999999999999999888988888888887


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.....++|+++|+||+|+.+....+++...+....           ......+++++|||++|.|+++++++|.+.+
T Consensus       103 ~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         103 RFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHE-----------LSASTPWHVQPACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             hhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccc-----------cCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence            654445799999999999876556666665554311           0112346789999999999999999998754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0079|consensus

Probab=99.94  E-value=5.3e-26  Score=146.93  Aligned_cols=127  Identities=18%  Similarity=0.313  Sum_probs=110.9

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      .+|..|+|+.  +++++++|  +++++|||+|+++|+.+...||++.+++++|||+++.++|...+.|++++.+.  +..
T Consensus        35 ~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cds  112 (198)
T KOG0079|consen   35 GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDS  112 (198)
T ss_pred             cceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--Ccc
Confidence            5889999985  88999987  89999999999999999999999999999999999999999999999999643  357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +|-++|+||.|+.+  .+..++...+...                 .++.+|++|||+..|++..|.-|.++
T Consensus       113 v~~vLVGNK~d~~~RrvV~t~dAr~~A~~-----------------mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen  113 VPKVLVGNKNDDPERRVVDTEDARAFALQ-----------------MGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             ccceecccCCCCccceeeehHHHHHHHHh-----------------cCchheehhhhhcccchHHHHHHHHH
Confidence            89999999999987  4455565555444                 46789999999999999999887764

>cd04126 Rab20 Rab20 subfamily

Probab=99.94  E-value=1.5e-25  Score=158.33  Aligned_cols=148  Identities=18%  Similarity=0.166  Sum_probs=109.4

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |+.++++..+.||+|.......+..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+... .
T Consensus        19 r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~   97 (220)
T cd04126          19 RYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-A   97 (220)
T ss_pred             HHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence            356677777899999876656666799999999999999999999999999999999999999999998888877653 2


Q ss_pred             CCCCcEEEEEeCCCcCC---------------------cCCHHHHHhhhcccCccCCCcccccccc-cCccEEEEEeeec
Q psy2161          81 LTDVPILILGNKIDIFD---------------------AASEDEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVL  138 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~  138 (155)
                      ..+.|+++|+||+|+.+                     .++.++........+.    .......+ ....+.|++|||+
T Consensus        98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~----~~~~~~~~~~~~~~~~~E~SA~  173 (220)
T cd04126          98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK----YKMLDEDLSPAAEKMCFETSAK  173 (220)
T ss_pred             CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc----cccccccccccccceEEEeeCC
Confidence            35689999999999854                     2223333333222000    00000000 0123679999999


Q ss_pred             cCCChHHHHHHHHhh
Q psy2161         139 KRQGFGNGFRWLANY  153 (155)
Q Consensus       139 ~~~~i~~~~~~l~~~  153 (155)
                      +|.||+++|.++++.
T Consensus       174 tg~~V~elf~~i~~~  188 (220)
T cd04126         174 TGYNVDELFEYLFNL  188 (220)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999999865

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.93  E-value=3e-25  Score=157.68  Aligned_cols=133  Identities=17%  Similarity=0.190  Sum_probs=105.2

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~   76 (155)
                      +.++.+ ..|.||++.. ...+.+++  +.+++|||+|++.|..++..|+++||++++|||++++.+|+.+ ..|+.++.
T Consensus        33 ~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~  112 (232)
T cd04174          33 LAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIM  112 (232)
T ss_pred             HhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            345554 4788999875 34566666  8999999999999999999999999999999999999999874 78998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--------------cCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCC
Q psy2161          77 ADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQ  141 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  141 (155)
                      ...  ++.|++||+||+|+.+              .++.++..+....                 .++ .|++|||++|.
T Consensus       113 ~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~-----------------~~~~~~~EtSAktg~  173 (232)
T cd04174         113 DYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ-----------------LGAEVYLECSAFTSE  173 (232)
T ss_pred             HhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH-----------------cCCCEEEEccCCcCC
Confidence            433  4689999999999863              2334444443333                 344 68999999998


Q ss_pred             -ChHHHHHHHHhh
Q psy2161         142 -GFGNGFRWLANY  153 (155)
Q Consensus       142 -~i~~~~~~l~~~  153 (155)
                       |++++|+.++..
T Consensus       174 ~~V~e~F~~~~~~  186 (232)
T cd04174         174 KSIHSIFRSASLL  186 (232)
T ss_pred             cCHHHHHHHHHHH
Confidence             899999998754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0087|consensus

Probab=99.93  E-value=5.9e-26  Score=154.55  Aligned_cols=134  Identities=15%  Similarity=0.255  Sum_probs=114.9

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +..+++ .+..+|+|+.  .+++.+++  ++.++|||+||++|+.....||++|.++++|||++...+|+.+..|+.++.
T Consensus        34 ftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELR  113 (222)
T KOG0087|consen   34 FTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELR  113 (222)
T ss_pred             hcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHH
Confidence            444554 4677999997  56677777  899999999999999999999999999999999999999999999999997


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+. .++++++||+||+||..  .++.++...+.+.                 .++.++++||+++.|++++|..+...
T Consensus       114 dha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~-----------------~~l~f~EtSAl~~tNVe~aF~~~l~~  174 (222)
T KOG0087|consen  114 DHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-----------------EGLFFLETSALDATNVEKAFERVLTE  174 (222)
T ss_pred             hcC-CCCeEEEEeecchhhhhccccchhhhHhHHHh-----------------cCceEEEecccccccHHHHHHHHHHH
Confidence            654 46899999999999976  6677777777766                 34689999999999999999887654

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=4e-25  Score=149.87  Aligned_cols=135  Identities=19%  Similarity=0.259  Sum_probs=108.0

Q ss_pred             CCCCCC-CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++++ ..+.||+|...  ..+..++  +++.+|||||++.+...+..++++++++++|||++++.+|+.+..|+..+.
T Consensus        22 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  101 (166)
T cd04122          22 FTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR  101 (166)
T ss_pred             HhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            445554 45667888753  4556665  789999999999999999999999999999999999999999999998875


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ..+.|+++|+||+|+.+  .++.++.......                 .++.+++|||++|.|++++|.++++.+
T Consensus       102 ~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         102 NLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----------------NGLLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             HhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            432 35689999999999965  3445555554433                 346899999999999999999998653

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=3.8e-25  Score=154.56  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=110.0

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      +.++.+ ..+.||+|..  ...+.++ +  +.+++|||||++.+..++..++++++++++|||++++.+|+.+..|+..+
T Consensus        20 l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i   99 (201)
T cd04107          20 YVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADL   99 (201)
T ss_pred             HHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            445554 4678999865  4566665 3  88999999999999999999999999999999999999999999998877


Q ss_pred             HhCC---CCCCCcEEEEEeCCCcC--CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161          76 LADD---ALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        76 ~~~~---~~~~~piilv~nK~Dl~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      ....   ...++|+++|+||+|+.  .....+++.+.....                ....+++|||++|.|++++|++|
T Consensus       100 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sak~~~~v~e~f~~l  163 (201)
T cd04107         100 DSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----------------GFIGWFETSAKEGINIEEAMRFL  163 (201)
T ss_pred             HHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----------------CCceEEEEeCCCCCCHHHHHHHH
Confidence            5422   23568999999999996  355666666655541                11579999999999999999999


Q ss_pred             Hhhc
Q psy2161         151 ANYI  154 (155)
Q Consensus       151 ~~~i  154 (155)
                      .+.+
T Consensus       164 ~~~l  167 (201)
T cd04107         164 VKNI  167 (201)
T ss_pred             HHHH
Confidence            8754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.93  E-value=1.3e-24  Score=146.08  Aligned_cols=140  Identities=33%  Similarity=0.600  Sum_probs=119.3

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      +.++....+.||.+.+...+.+++..+.+||+||++.+...|..+++++|++++|+|+++++++.....|+..+......
T Consensus        19 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~   98 (158)
T cd00878          19 LKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEEL   98 (158)
T ss_pred             HhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc
Confidence            45566778899999998889999999999999999999999999999999999999999999999998899888765555


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+.|+++++||+|+.......++.+.++..            ......++++++||++|.|++++|++|..+
T Consensus        99 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  158 (158)
T cd00878          99 KGVPLLIFANKQDLPGALSVSELIEKLGLE------------KILGRRWHIQPCSAVTGDGLDEGLDWLLQQ  158 (158)
T ss_pred             CCCcEEEEeeccCCccccCHHHHHHhhChh------------hccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence            689999999999997766666666665541            123356789999999999999999999753

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04175 Rap1 Rap1 subgroup

Probab=99.93  E-value=3.4e-25  Score=149.83  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=108.3

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .+|.+ ..+.||++.. ...+..++  +.+++|||||++.+..++..+++++|++++|||++++.+|+....|+..+.+.
T Consensus        22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~  101 (164)
T cd04175          22 VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV  101 (164)
T ss_pred             HhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            44554 4577898865 44667765  78899999999999999999999999999999999999999999999988765


Q ss_pred             CCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|+++|+||+|+.+.  ....+.......                 .++++++|||++|.|++++|+|+.+.+
T Consensus       102 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         102 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-----------------WGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH-----------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            55568999999999999652  333333333222                 236899999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=3.9e-25  Score=151.41  Aligned_cols=143  Identities=17%  Similarity=0.258  Sum_probs=105.0

Q ss_pred             CCCCCC-CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      +.++.+ ..+.||++... ..+.+++  +++++|||+|++.+..++..+++++|++++|||++++++|+.+. .|+..+.
T Consensus        21 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~  100 (175)
T cd01874          21 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT  100 (175)
T ss_pred             HHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            456675 68899998764 3667777  88999999999999999999999999999999999999999986 5887775


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccc---ccc-ccC-ccEEEEEeeeccCCChHHHHHHHH
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS---REI-LQM-RPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~-~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      ...  ++.|+++|+||+|+.+.   .++.+.+....    .....   ... ... ..+.+++|||++|.|++++|+.++
T Consensus       101 ~~~--~~~piilvgnK~Dl~~~---~~~~~~l~~~~----~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~  171 (175)
T cd01874         101 HHC--PKTPFLLVGTQIDLRDD---PSTIEKLAKNK----QKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI  171 (175)
T ss_pred             HhC--CCCCEEEEEECHhhhhC---hhhHHHhhhcc----CCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHH
Confidence            432  47899999999998542   11111111100    00000   000 111 236899999999999999999987


Q ss_pred             hh
Q psy2161         152 NY  153 (155)
Q Consensus       152 ~~  153 (155)
                      +.
T Consensus       172 ~~  173 (175)
T cd01874         172 LA  173 (175)
T ss_pred             HH
Confidence            64

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04131 Rnd Rnd subfamily

Probab=99.93  E-value=4.8e-25  Score=151.36  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=104.2

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~   76 (155)
                      +.++.+ ..+.||++.. ...+.+++  +++++|||+|++.|..+++.++++||++++|||++++.+|+.+ ..|+..+.
T Consensus        21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~  100 (178)
T cd04131          21 FAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQ  100 (178)
T ss_pred             HHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHH
Confidence            345554 5788999875 44566666  8899999999999999999999999999999999999999996 78998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCC
Q psy2161          77 ADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQ  141 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  141 (155)
                      ...  ++.|+++|+||+|+.+.              ++.++..+....                 .+. .+++|||++|.
T Consensus       101 ~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~-----------------~~~~~~~E~SA~~~~  161 (178)
T cd04131         101 EFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ-----------------LGAEIYLECSAFTSE  161 (178)
T ss_pred             HHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH-----------------hCCCEEEECccCcCC
Confidence            543  57899999999998541              333333333322                 343 79999999999


Q ss_pred             C-hHHHHHHHHh
Q psy2161         142 G-FGNGFRWLAN  152 (155)
Q Consensus       142 ~-i~~~~~~l~~  152 (155)
                      | ++++|..+.+
T Consensus       162 ~~v~~~F~~~~~  173 (178)
T cd04131         162 KSVRDIFHVATM  173 (178)
T ss_pred             cCHHHHHHHHHH
Confidence            5 9999998876

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=99.93  E-value=5.3e-25  Score=151.68  Aligned_cols=138  Identities=19%  Similarity=0.245  Sum_probs=104.4

Q ss_pred             CCCCCC-CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ ..+.||+|...  ..+.+++  +.+++|||+|++.+..++..++++||++++|||++++.+|+.+..|+..+.
T Consensus        20 ~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~   99 (182)
T cd04128          20 YVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQAR   99 (182)
T ss_pred             HHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            455665 45899999764  5677777  789999999999999999999999999999999999999999999999886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ... ....| ++|+||+|+.......   .+......             .....++.+++|||++|.|++++|+++.+.
T Consensus       100 ~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~-------------~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~  164 (182)
T cd04128         100 GFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARK-------------YAKAMKAPLIFCSTSHSINVQKIFKIVLAK  164 (182)
T ss_pred             HhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHH-------------HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            543 23466 6789999985322111   11111110             011234689999999999999999999865


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       165 l  165 (182)
T cd04128         165 A  165 (182)
T ss_pred             H
Confidence            3

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04117 Rab15 Rab15 subfamily

Probab=99.93  E-value=1.2e-24  Score=147.08  Aligned_cols=135  Identities=13%  Similarity=0.260  Sum_probs=109.1

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++++ +.+.||+|..  ...+.+++  +++++||++|++.+...+..+++++|++++|||++++++|+.+..|+..+.
T Consensus        20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~   99 (161)
T cd04117          20 FTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVD   99 (161)
T ss_pred             HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            456665 4578999975  45677776  789999999999999999999999999999999999999999999998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ...+.|+++|+||+|+.+  .+..++.......                 .+.++++|||++|.|++++|++|.+.+
T Consensus       100 ~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~  161 (161)
T cd04117         100 EY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKE-----------------YGMDFFETSACTNSNIKESFTRLTELV  161 (161)
T ss_pred             Hh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHhhC
Confidence            43 234689999999999865  3344444444332                 235799999999999999999998753

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04136 Rap_like Rap-like subfamily

Probab=99.93  E-value=7.4e-25  Score=147.75  Aligned_cols=135  Identities=17%  Similarity=0.236  Sum_probs=106.8

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ..+.+ ..+.||.+.. ...+..++  +.+++|||||++++..++..++++++++++|||++++.+|+.+..|+..+.+.
T Consensus        22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~  101 (163)
T cd04136          22 VQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRV  101 (163)
T ss_pred             HhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34443 4677888753 55666766  78899999999999999999999999999999999999999999999888765


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|+++|+||+|+.+  .....+.......                 .+.+++++||++|.|+.++|+++.+.+
T Consensus       102 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         102 KDTENVPMVLVGNKCDLEDERVVSREEGQALARQ-----------------WGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             cCCCCCCEEEEEECccccccceecHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            5556789999999999864  2233333222222                 235899999999999999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=1.2e-24  Score=149.15  Aligned_cols=129  Identities=17%  Similarity=0.247  Sum_probs=105.2

Q ss_pred             CcccCCCCCce--eEEEEC------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161           8 AQHMPTLHPTS--EELSMG------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD   73 (155)
Q Consensus         8 ~~~~pT~~~~~--~~~~~~------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~   73 (155)
                      ..+.||++...  ..+.++            .+.+.+|||||++.+...+..+++++|++++|||++++++|..+..|+.
T Consensus        31 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~  110 (180)
T cd04127          31 PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMS  110 (180)
T ss_pred             ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence            46789998753  334432            2889999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          74 SLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        74 ~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .+.......+.|+++|+||+|+.+  .++.++.......                 .+++++++||++|.|++++|++|.
T Consensus       111 ~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~~~~v~~l~~~l~  173 (180)
T cd04127         111 QLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-----------------YGIPYFETSAATGTNVEKAVERLL  173 (180)
T ss_pred             HHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            887554445789999999999865  3455555544443                 245799999999999999999998


Q ss_pred             hh
Q psy2161         152 NY  153 (155)
Q Consensus       152 ~~  153 (155)
                      +.
T Consensus       174 ~~  175 (180)
T cd04127         174 DL  175 (180)
T ss_pred             HH
Confidence            64

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=9.3e-25  Score=151.22  Aligned_cols=136  Identities=18%  Similarity=0.251  Sum_probs=108.4

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.++.+ ..+.||.+.. ...+.+++  +.+++|||||++.+..++..++++++++++|||++++.+|+.+..|+..+.+
T Consensus        25 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~  104 (189)
T PTZ00369         25 FIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILR  104 (189)
T ss_pred             HhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            344554 5778999875 45556665  7899999999999999999999999999999999999999999999988876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....+.|+++|+||+|+.+  .+...+.......                 .+++++++||++|.|++++|++|.+.+
T Consensus       105 ~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-----------------~~~~~~e~Sak~~~gi~~~~~~l~~~l  166 (189)
T PTZ00369        105 VKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-----------------FGIPFLETSAKQRVNVDEAFYELVREI  166 (189)
T ss_pred             hcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------hCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            54445789999999999854  2343333333322                 235799999999999999999998754

>KOG0394|consensus

Probab=99.93  E-value=5e-25  Score=147.08  Aligned_cols=130  Identities=20%  Similarity=0.313  Sum_probs=112.3

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC--
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL--   81 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~--   81 (155)
                      ..+..|+|..  .+.+.+++  +.++||||+||++|+++.-.+|++||.+++|||++++.+|+.+..|-++.+.....  
T Consensus        36 ~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~  115 (210)
T KOG0394|consen   36 QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQD  115 (210)
T ss_pred             HHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCC
Confidence            4677899985  77788877  89999999999999999999999999999999999999999999999999865432  


Q ss_pred             -CCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          82 -TDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        82 -~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                       ...|++++|||+|+.+    .++.......+...                .+++|+++|||.+.|++++|..+.+.
T Consensus       116 Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~----------------gnipyfEtSAK~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  116 PETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK----------------GNIPYFETSAKEATNVDEAFEEIARR  176 (210)
T ss_pred             CCcccEEEEcccccCCCCccceeeHHHHHHHHHhc----------------CCceeEEecccccccHHHHHHHHHHH
Confidence             3479999999999865    46677777777653                57899999999999999999987753

>KOG0080|consensus

Probab=99.93  E-value=1.9e-25  Score=146.19  Aligned_cols=135  Identities=19%  Similarity=0.276  Sum_probs=115.1

Q ss_pred             CCCCCCcccCC-CCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRTAQHMPT-LHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~~~~~pT-~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      ..+.+.+..|| +|+.  ++.+.++|  +++.+|||+||++|+.+.+.||++|.++|+|||++..++|..+..|+.++-.
T Consensus        32 v~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~  111 (209)
T KOG0080|consen   32 VSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL  111 (209)
T ss_pred             HhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHh
Confidence            34556666665 8875  77777776  8999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....++.-.++|+||+|...  .++.++-..+...                 .++-+++|||++.+|++..|+.|+..|
T Consensus       112 Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-----------------h~~LFiE~SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  112 YSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-----------------HRCLFIECSAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             hcCCccHhHhhhcccccchhcccccHHHHHHHHHh-----------------hCcEEEEcchhhhccHHHHHHHHHHHH
Confidence            77667888999999999763  5677776666655                 678899999999999999999888653

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.93  E-value=1.8e-24  Score=148.07  Aligned_cols=148  Identities=14%  Similarity=0.265  Sum_probs=103.1

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      +..+.+ ..+.||++.. ...+..++  +++++|||||+..+..++..+++++|++|+|||++++++|..+. .|+..+.
T Consensus        21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~  100 (174)
T cd01871          21 YTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR  100 (174)
T ss_pred             HhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            345554 6788999764 34556665  78999999999999999999999999999999999999999985 6877775


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  ..+.|+++|+||+|+.+. ...+.+...... .++..++.......  ..+.+++|||++|.|++++|+.+++.+
T Consensus       101 ~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~~  174 (174)
T cd01871         101 HH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-PITYPQGLAMAKEI--GAVKYLECSALTQKGLKTVFDEAIRAV  174 (174)
T ss_pred             Hh--CCCCCEEEEeeChhhccChhhHHHHhhccCC-CCCHHHHHHHHHHc--CCcEEEEecccccCCHHHHHHHHHHhC
Confidence            43  247999999999998542 111111111000 00000000000001  125899999999999999999998753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04144 Ras2 Ras2 subfamily

Probab=99.92  E-value=1.5e-24  Score=150.33  Aligned_cols=136  Identities=17%  Similarity=0.224  Sum_probs=106.1

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      |.++.+ ..+.||.+.. ...+.+++  +.+++|||||++++...+..+++++|++++|||++++.+|+.+..|+..+..
T Consensus        19 l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~   98 (190)
T cd04144          19 LCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQR   98 (190)
T ss_pred             HHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            445555 4578898865 44556666  6799999999999999999999999999999999999999999999888764


Q ss_pred             CCC--CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          78 DDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        78 ~~~--~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ...  ..+.|+++|+||+|+.+  .+...+.......                 .++.++++||++|.|++++|+++.+.
T Consensus        99 ~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~SAk~~~~v~~l~~~l~~~  161 (190)
T cd04144          99 VKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR-----------------LGCEFIEASAKTNVNVERAFYTLVRA  161 (190)
T ss_pred             HhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH-----------------hCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            332  25789999999999864  3333333332222                 24579999999999999999999875


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       162 l  162 (190)
T cd04144         162 L  162 (190)
T ss_pred             H
Confidence            3

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.7e-24  Score=153.19  Aligned_cols=132  Identities=17%  Similarity=0.276  Sum_probs=105.6

Q ss_pred             CCCCC-CcccCCCCCceeE--EEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~~~~--~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      ..+.+ ..+.||+|.....  +..++  +++.+|||+|++.+..++..|+++++++|+|||++++.+|..+..|+..+..
T Consensus        34 ~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~  113 (219)
T PLN03071         34 LTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR  113 (219)
T ss_pred             hhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            44554 5688999986444  44443  8999999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .  ..+.|+++|+||+|+.+ .+..+++ .....                 ..+.+++|||++|.|++++|+||++.+
T Consensus       114 ~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-----------------~~~~~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        114 V--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-----------------KNLQYYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             h--CCCCcEEEEEEchhhhhccCCHHHH-HHHHh-----------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            4  35799999999999865 2333333 22221                 356899999999999999999998754

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=2.8e-24  Score=145.68  Aligned_cols=135  Identities=16%  Similarity=0.264  Sum_probs=107.0

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++++ ..+.||.|..  ...+..++  +++++|||||++.+...+..+++++|++++|+|++++++++.+..|+..+.
T Consensus        21 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~  100 (165)
T cd01865          21 YADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK  100 (165)
T ss_pred             HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            445665 4678999864  34555554  789999999999999999999999999999999999999999999998885


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ..++|+++|+||+|+.+.  ...++..+....                 .+++++++||++|.|++++|+++.+.+
T Consensus       101 ~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         101 TYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQ-----------------LGFEFFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             HhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            432 346899999999998652  333444333332                 245799999999999999999998765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04176 Rap2 Rap2 subgroup

Probab=99.92  E-value=1.7e-24  Score=146.18  Aligned_cols=136  Identities=17%  Similarity=0.223  Sum_probs=106.2

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ..|++ ..+.||.+.. ...+..++  +.+++|||||++++..++..+++++|++++|+|++++.+|..+..|+..+...
T Consensus        22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~  101 (163)
T cd04176          22 VSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV  101 (163)
T ss_pred             HcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34554 4567887643 55666666  67899999999999999999999999999999999999999999998888765


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ....++|+++|+||+|+..  .....+.......                 .++++++|||++|.|+.++|.++++.++
T Consensus       102 ~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~l~  163 (163)
T cd04176         102 KGYEKVPIILVGNKVDLESEREVSSAEGRALAEE-----------------WGCPFMETSAKSKTMVNELFAEIVRQMN  163 (163)
T ss_pred             cCCCCCCEEEEEECccchhcCccCHHHHHHHHHH-----------------hCCEEEEecCCCCCCHHHHHHHHHHhcC
Confidence            4446799999999999854  2222232222221                 2357899999999999999999998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.92  E-value=3.3e-24  Score=146.22  Aligned_cols=136  Identities=17%  Similarity=0.253  Sum_probs=106.5

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ ..|.||++..  ...+.+++  +++++|||||++++..++..+++++|++++|||++++.++.....|+..++
T Consensus        20 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~   99 (170)
T cd04108          20 FCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDAL   99 (170)
T ss_pred             HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            345554 4788999876  35666666  789999999999999999999999999999999999999999999999887


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          77 ADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +.......|+++|+||+|+.+...    ..+.......                 .+..++++||++|.|++++|+.+.+
T Consensus       100 ~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~g~~v~~lf~~l~~  162 (170)
T cd04108         100 KENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE-----------------MQAEYWSVSALSGENVREFFFRVAA  162 (170)
T ss_pred             HhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            654444678999999999864211    2222222211                 2357899999999999999999987


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       163 ~~  164 (170)
T cd04108         163 LT  164 (170)
T ss_pred             HH
Confidence            53

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=2.6e-24  Score=146.12  Aligned_cols=133  Identities=20%  Similarity=0.329  Sum_probs=105.1

Q ss_pred             CCCC-CCcccCCCCCceeEEEE--CC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPTSEELSM--GD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~~~~~~~--~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++. ...+.||.+.....+.+  ++  +.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.+
T Consensus        21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (166)
T cd00877          21 LTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR  100 (166)
T ss_pred             HhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3444 34688999987554443  33  8999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  .++|+++|+||+|+.+.....+..+...                 ...+.++++||++|.|++++|++|.+.+
T Consensus       101 ~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877         101 VC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----------------KKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             hC--CCCcEEEEEEchhcccccCCHHHHHHHH-----------------HcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            43  3799999999999975322222222222                 2456899999999999999999998754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.92  E-value=4.8e-24  Score=143.38  Aligned_cols=136  Identities=18%  Similarity=0.274  Sum_probs=108.1

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.++.+ ..+.||.+.. ...+.+++  +.+++|||||++.++.++..|+++++++++|+|+++..+++.+..|+..+.+
T Consensus        21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~  100 (162)
T cd04138          21 LIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKR  100 (162)
T ss_pred             HHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            344553 5677888864 44556666  6789999999999999999999999999999999999999998889888876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....+.|+++|+||+|+.+ .....+.......                 .++.++++||++|.|++++|+++.+.+
T Consensus       101 ~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         101 VKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----------------YGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             hcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----------------hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            55456789999999999865 3333444443332                 245799999999999999999999875

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=4.4e-24  Score=150.68  Aligned_cols=136  Identities=15%  Similarity=0.227  Sum_probs=107.1

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      |.++.+ ..+.||+|..  ...+.+++   +++++|||||++.+..++..++++||++++|||++++++|+.+..|+..+
T Consensus        20 l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l   99 (215)
T cd04109          20 FAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMV   99 (215)
T ss_pred             HhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            344444 5788999875  45566643   89999999999999999999999999999999999999999999998888


Q ss_pred             HhCCC--CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          76 LADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        76 ~~~~~--~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .+...  ..+.|+++|+||+|+.+  .+..++.......                 .++.++++||++|.|++++|++++
T Consensus       100 ~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-----------------~~~~~~~iSAktg~gv~~lf~~l~  162 (215)
T cd04109         100 RKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-----------------NGMESCLVSAKTGDRVNLLFQQLA  162 (215)
T ss_pred             HHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHH
Confidence            65432  23568999999999964  3444444443332                 235789999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       163 ~~l  165 (215)
T cd04109         163 AEL  165 (215)
T ss_pred             HHH
Confidence            754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=5.8e-24  Score=143.75  Aligned_cols=136  Identities=22%  Similarity=0.384  Sum_probs=108.5

Q ss_pred             CCCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.+++ ...+.||++..  ...+..++  +.+++|||||++.+..++..+++++|++|+|+|++++.+++.+..|+..+.
T Consensus        20 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~   99 (168)
T cd04119          20 YCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMK   99 (168)
T ss_pred             HHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence            34454 45788999875  44566655  899999999999999999999999999999999999999999999999887


Q ss_pred             hCCC----CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161          77 ADDA----LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        77 ~~~~----~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      +...    ..+.|+++|+||+|+.+  .....+.......                 .++.++++||++|.|+++++++|
T Consensus       100 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l  162 (168)
T cd04119         100 QEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-----------------KGFKYFETSACTGEGVNEMFQTL  162 (168)
T ss_pred             HhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHH
Confidence            5433    25689999999999863  3344444443332                 23579999999999999999999


Q ss_pred             Hhhc
Q psy2161         151 ANYI  154 (155)
Q Consensus       151 ~~~i  154 (155)
                      .+.+
T Consensus       163 ~~~l  166 (168)
T cd04119         163 FSSI  166 (168)
T ss_pred             HHHH
Confidence            8754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0086|consensus

Probab=99.92  E-value=2.6e-24  Score=139.94  Aligned_cols=127  Identities=19%  Similarity=0.240  Sum_probs=107.0

Q ss_pred             cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      +..-|+|+.  .+.+.+++  +++++|||+||++|++..+.||++|.+.++|||+++.++|+.+..|+.+.. ....+++
T Consensus        37 dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR-~lAs~nI  115 (214)
T KOG0086|consen   37 DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR-TLASPNI  115 (214)
T ss_pred             cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH-hhCCCcE
Confidence            344578875  67778876  899999999999999999999999999999999999999999999999884 3455678


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      -+++++||.||..  .++..+...+.+.                 ..+.++++||++|+|++|.|-.+.+.
T Consensus       116 vviL~GnKkDL~~~R~VtflEAs~FaqE-----------------nel~flETSa~TGeNVEEaFl~c~~t  169 (214)
T KOG0086|consen  116 VVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFLKCART  169 (214)
T ss_pred             EEEEeCChhhcChhhhhhHHHHHhhhcc-----------------cceeeeeecccccccHHHHHHHHHHH
Confidence            8999999999976  4566666666555                 45688999999999999999877653

>KOG0093|consensus

Probab=99.92  E-value=1.1e-24  Score=140.68  Aligned_cols=128  Identities=16%  Similarity=0.266  Sum_probs=105.6

Q ss_pred             cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      .+..|.|+.  .+++-.+.  +++++|||+|+++|+.....||++|+++|+|||+++.++|..+..|...+. ..+..+.
T Consensus        49 afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk-tysw~na  127 (193)
T KOG0093|consen   49 AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK-TYSWDNA  127 (193)
T ss_pred             ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe-eeeccCc
Confidence            567788875  44444333  899999999999999999999999999999999999999999999999884 4466789


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||||+.+  .++-+......+.                 .++.++++|||.+.|+..+|+.+...|
T Consensus       128 qvilvgnKCDmd~eRvis~e~g~~l~~~-----------------LGfefFEtSaK~NinVk~~Fe~lv~~I  182 (193)
T KOG0093|consen  128 QVILVGNKCDMDSERVISHERGRQLADQ-----------------LGFEFFETSAKENINVKQVFERLVDII  182 (193)
T ss_pred             eEEEEecccCCccceeeeHHHHHHHHHH-----------------hChHHhhhcccccccHHHHHHHHHHHH
Confidence            9999999999976  3444544444433                 345899999999999999999987654

>KOG0074|consensus

Probab=99.92  E-value=6.7e-25  Score=140.80  Aligned_cols=141  Identities=30%  Similarity=0.571  Sum_probs=126.7

Q ss_pred             CCCCCCCcccCCCCCceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |+.++.....||.|++...+.+++ +++++||.+|++..+++|..||.+.|++|||+|+++...|++....+-+++....
T Consensus        37 L~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK  116 (185)
T KOG0074|consen   37 LKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK  116 (185)
T ss_pred             HccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh
Confidence            566678888999999999999988 9999999999999999999999999999999999999999998888888887777


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...+|+++..||.|+..+.+.+++...+...+            +..+.|++.+|||.+++|+....+|++...
T Consensus       117 l~~vpvlIfankQdlltaa~~eeia~klnl~~------------lrdRswhIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  117 LAEVPVLIFANKQDLLTAAKVEEIALKLNLAG------------LRDRSWHIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             hhccceeehhhhhHHHhhcchHHHHHhcchhh------------hhhceEEeeeCccccccCccCcchhhhcCC
Confidence            78899999999999988888888888887733            566789999999999999999999987643

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=2.2e-23  Score=142.07  Aligned_cols=140  Identities=28%  Similarity=0.554  Sum_probs=115.5

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.+.....+.||.|.+...+.+++..+.+||+||+..+...|..+++++|++++|+|+++..++.....++..+++....
T Consensus        34 l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~  113 (173)
T cd04155          34 LASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL  113 (173)
T ss_pred             HhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh
Confidence            34445666889999998899999999999999999999999999999999999999999988888888888777765444


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .++|+++++||+|+.+.....++.+.++..            ......+.+++|||++|.|++++|+||+++
T Consensus       114 ~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  173 (173)
T cd04155         114 AGVPVLVFANKQDLATAAPAEEIAEALNLH------------DLRDRTWHIQACSAKTGEGLQEGMNWVCKN  173 (173)
T ss_pred             cCCCEEEEEECCCCccCCCHHHHHHHcCCc------------ccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence            579999999999987655566666665542            233445678999999999999999999863

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0095|consensus

Probab=99.92  E-value=1.3e-24  Score=140.76  Aligned_cols=136  Identities=17%  Similarity=0.194  Sum_probs=110.6

Q ss_pred             CCCCCCCC-cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           1 MLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         1 ~l~~~~~~-~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      |+++|-++ -.-.|+|+.  +++++++|  +++++|||+||++|++....||+.|+++|+|||++...+|+.+..|+.++
T Consensus        26 rftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlrei  105 (213)
T KOG0095|consen   26 RFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREI  105 (213)
T ss_pred             hhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHH
Confidence            45566654 445788875  88999987  89999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          76 LADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+.. ...+-.++|+||+|+.+. ..++++.+.+...                ..+.++++||++..|++.+|..++-.
T Consensus       106 e~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~----------------qdmyfletsakea~nve~lf~~~a~r  167 (213)
T KOG0095|consen  106 EQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEA----------------QDMYFLETSAKEADNVEKLFLDLACR  167 (213)
T ss_pred             HHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHh----------------hhhhhhhhcccchhhHHHHHHHHHHH
Confidence            7554 345678899999998762 4445555544431                34678999999999999999887643

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.92  E-value=1.4e-23  Score=142.41  Aligned_cols=135  Identities=19%  Similarity=0.277  Sum_probs=108.8

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ ..+.||.+..  ...+.+++  +.+++|||||++.+...+..++++||++++|+|++++.+|+.+..|+..+.
T Consensus        23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~  102 (167)
T cd01867          23 FSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIE  102 (167)
T ss_pred             HhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence            344553 4678999875  45666766  789999999999999999999999999999999999999999999999886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ..+.|+++|+||+|+.+  ....++.......                 .+++++++||++|.|++++|+++.+.+
T Consensus       103 ~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         103 EHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----------------YGIKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             HhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            532 35789999999999975  3344444444433                 345799999999999999999998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04134 Rho3 Rho3 subfamily

Probab=99.92  E-value=2.5e-24  Score=149.05  Aligned_cols=148  Identities=14%  Similarity=0.218  Sum_probs=104.9

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      +.++.+ ..+.||++.. ...+..++  +.+++|||+|++.+..++..++++++++++|||++++.+|+.+. .|+..+.
T Consensus        20 ~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~   99 (189)
T cd04134          20 FTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIR   99 (189)
T ss_pred             HhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            445665 4578999876 34455555  78999999999999999999999999999999999999998885 6888886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  ..+.|+++|+||+|+.+.....+..............+.   ..... ..+.+++|||++|.|++++|+++++.+
T Consensus       100 ~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~  173 (189)
T cd04134         100 EH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL---AVAKRINALRYLECSAKLNRGVNEAFTEAARVA  173 (189)
T ss_pred             Hh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH---HHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence            43  247899999999999753322222111111000000000   00111 236899999999999999999998753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.91  E-value=1.3e-23  Score=148.48  Aligned_cols=144  Identities=15%  Similarity=0.188  Sum_probs=100.8

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      +..+++ ..|.||++.+ ...+.+++  +.+.+|||+|++.|..+++.+|+++|++++|||++++++|+.+. .|...+.
T Consensus        21 ~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~  100 (222)
T cd04173          21 FAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ  100 (222)
T ss_pred             HHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            345554 4789999876 34667766  88999999999999999999999999999999999999999984 5665553


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhc--ccCccCCCcccccccccCcc-EEEEEeeeccCCC-hHHHHHHHHh
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFG--LYGLTTGKEFTSREILQMRP-IELFMCSVLKRQG-FGNGFRWLAN  152 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-i~~~~~~l~~  152 (155)
                      .  ..++.|++||+||+|+.+...  .+....+  ..+++..++...   ....+ ..|++|||+++.| +.++|+.+..
T Consensus       101 ~--~~~~~piiLVgnK~DL~~~~~--~~~~~~~~~~~pIs~e~g~~~---ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~  173 (222)
T cd04173         101 E--FCPNAKVVLVGCKLDMRTDLA--TLRELSKQRLIPVTHEQGTVL---AKQVGAVSYVECSSRSSERSVRDVFHVATV  173 (222)
T ss_pred             h--hCCCCCEEEEEECcccccchh--hhhhhhhccCCccCHHHHHHH---HHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence            2  235799999999999965211  1110000  000000000000   11123 4899999999985 9999998765

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04110 Rab35 Rab35 subfamily

Probab=99.91  E-value=1.7e-23  Score=146.03  Aligned_cols=134  Identities=16%  Similarity=0.286  Sum_probs=107.6

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++++ ..+.||+|..  ...+.+++  +.+.+||+||++.+...+..++++++++++|||++++++|+.+..|+..+.
T Consensus        26 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~  105 (199)
T cd04110          26 FADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE  105 (199)
T ss_pred             HhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            344554 4688999865  45666666  689999999999999999999999999999999999999999999999886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...  ...|+++|+||+|+.+.  ....+.......                 .++.++++||++|.|++++|++|.+.+
T Consensus       106 ~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         106 QNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-----------------MGISLFETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             HhC--CCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence            432  46899999999998652  344444444333                 246899999999999999999998653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=1.8e-23  Score=145.00  Aligned_cols=135  Identities=17%  Similarity=0.262  Sum_probs=107.2

Q ss_pred             CCCCCC--CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRT--AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~--~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      +.++++  ..+.||.+...  ..+.+++  +++++|||||++++...+..+++++|++++|+|++++++++.+..|+..+
T Consensus        20 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i   99 (191)
T cd04112          20 FKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEI   99 (191)
T ss_pred             HhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            445554  36788998763  3466666  79999999999999999999999999999999999999999999999888


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ... ...+.|+++|+||+|+..  .....+.......                 .+++++++||++|.|++++|+++.+.
T Consensus       100 ~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~-----------------~~~~~~e~Sa~~~~~v~~l~~~l~~~  161 (191)
T cd04112         100 KEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKE-----------------YGVPFMETSAKTGLNVELAFTAVAKE  161 (191)
T ss_pred             HHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            653 334789999999999853  3344444443332                 23579999999999999999999875


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       162 ~  162 (191)
T cd04112         162 L  162 (191)
T ss_pred             H
Confidence            4

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.91  E-value=5.7e-23  Score=137.31  Aligned_cols=139  Identities=29%  Similarity=0.543  Sum_probs=113.0

Q ss_pred             CCCCC-CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           2 LKNDR-TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |.+++ ...+.||.+.+...+..+++.+.+||+||+..++..|..+++++|++++|+|++++.++.....++..+.....
T Consensus        19 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~   98 (159)
T cd04159          19 IAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPS   98 (159)
T ss_pred             HccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh
Confidence            34444 45788999999888888889999999999999999999999999999999999998888888888888776555


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..++|+++|+||+|+.+.....++...+...            ......+.++++||++|.|++++++++.+
T Consensus        99 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          99 LEGIPLLVLGNKNDLPGALSVDELIEQMNLK------------SITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             hcCCCEEEEEeCccccCCcCHHHHHHHhCcc------------cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            5688999999999987654444454444331            12334578999999999999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.91  E-value=2.2e-23  Score=141.25  Aligned_cols=135  Identities=20%  Similarity=0.295  Sum_probs=107.6

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ ..+.||.+..  ...+..++  +++++||+||++.+...+..+++++|++++|||++++++|..+..|+..+.
T Consensus        22 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~  101 (166)
T cd01869          22 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEID  101 (166)
T ss_pred             HhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence            344544 4667888864  45666666  689999999999999999999999999999999999999999999998885


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ..+.|+++|+||+|+..  .+..++.......                 .+++++++||++|.|++++|+++.+.+
T Consensus       102 ~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         102 RYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-----------------LGIPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             HhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence            432 35689999999999865  3444444444433                 346899999999999999999998754

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.91  E-value=1.9e-23  Score=150.01  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             CCCCCCC-cccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~~-~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.++++. .+.||++.. ...+.+++  +.+++|||+|++.|..++..++.++|++|+|||++++.+|+.+..|+.++..
T Consensus        20 ~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~   99 (247)
T cd04143          20 FLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILE   99 (247)
T ss_pred             HHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            4556654 678999753 55667776  7899999999999999999999999999999999999999999999888864


Q ss_pred             CC--------CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161          78 DD--------ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        78 ~~--------~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      ..        ...++|+++|+||+|+..  .+..+++.+.+...                ..+.++++||++|.|++++|
T Consensus       100 ~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~~~~~~evSAktg~gI~elf  163 (247)
T cd04143         100 TKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------ENCAYFEVSAKKNSNLDEMF  163 (247)
T ss_pred             hhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------CCCEEEEEeCCCCCCHHHHH
Confidence            32        234789999999999864  45566666655431                24689999999999999999


Q ss_pred             HHHHhh
Q psy2161         148 RWLANY  153 (155)
Q Consensus       148 ~~l~~~  153 (155)
                      ++|.+.
T Consensus       164 ~~L~~~  169 (247)
T cd04143         164 RALFSL  169 (247)
T ss_pred             HHHHHH
Confidence            999874

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04111 Rab39 Rab39 subfamily

Probab=99.91  E-value=1.7e-23  Score=147.31  Aligned_cols=135  Identities=16%  Similarity=0.242  Sum_probs=107.4

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      .++.+ ..+.||+|..  ...+.+. +  +++++|||||++.+..++..+++++|++++|||++++++|+.+..|+..+.
T Consensus        23 ~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~  102 (211)
T cd04111          23 TEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEAR  102 (211)
T ss_pred             HcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            34454 3467898875  4455553 3  789999999999999999999999999999999999999999999999987


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ........|+++|+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|++|++.+
T Consensus       103 ~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         103 SHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD-----------------LGMKYIETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             HhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH-----------------hCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            654445678999999999865  3444454444332                 346899999999999999999998753

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.91  E-value=3e-23  Score=141.08  Aligned_cols=137  Identities=15%  Similarity=0.244  Sum_probs=108.6

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+ +.+.||+|..  ...+.+++  +++++||+||++++..++..+++++|++++|||++++.+++.+..|...++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  104 (170)
T cd04116          25 YVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFI  104 (170)
T ss_pred             HHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence            344554 3567888875  45566665  789999999999999999999999999999999999999999999988776


Q ss_pred             hCCC---CCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          77 ADDA---LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        77 ~~~~---~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ....   ..+.|+++|+||+|+.. .....++.+.....                ....++++||++|.|+.++|+++.+
T Consensus       105 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         105 YYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----------------GDYPYFETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence            5332   24689999999999864 44556665554431                1247899999999999999999987


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       169 ~~  170 (170)
T cd04116         169 RV  170 (170)
T ss_pred             hC
Confidence            64

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.91  E-value=1.3e-23  Score=141.61  Aligned_cols=131  Identities=15%  Similarity=0.247  Sum_probs=99.8

Q ss_pred             CCCCCCc-ccCCCCCceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           3 KNDRTAQ-HMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         3 ~~~~~~~-~~pT~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      ..+.+.. +.||.+.....+.+++  +.+.+|||+|++.     ..+++++|++++|||++++.+|+.+..|+.++....
T Consensus        21 ~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~   95 (158)
T cd04103          21 LTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR   95 (158)
T ss_pred             HhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            3455433 4566555567788888  7899999999974     346789999999999999999999999999997665


Q ss_pred             CCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...+.|+++|+||.|+..    .++..+..+....                ..++.+++|||++|.||+++|+++++.+
T Consensus        96 ~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~----------------~~~~~~~e~SAk~~~~i~~~f~~~~~~~  158 (158)
T cd04103          96 NISEIPLILVGTQDAISESNPRVIDDARARQLCAD----------------MKRCSYYETCATYGLNVERVFQEAAQKI  158 (158)
T ss_pred             CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH----------------hCCCcEEEEecCCCCCHHHHHHHHHhhC
Confidence            556789999999999842    2333333332221                1247899999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04125 RabA_like RabA-like subfamily

Probab=99.91  E-value=2.4e-23  Score=143.93  Aligned_cols=135  Identities=17%  Similarity=0.292  Sum_probs=107.2

Q ss_pred             CCCCCCC-cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~~-~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++.+. .+.||.|..  ...+.+++  +.+++|||+|++.+...+..+++++|++++|||++++.+|..+..|+..+.
T Consensus        20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~   99 (188)
T cd04125          20 FTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEIN   99 (188)
T ss_pred             HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            4566665 488999864  45666665  789999999999999999999999999999999999999999999998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ....|+++++||+|+.+  .+...+.......                 .++.++++||++|.|++++|++|.+.+
T Consensus       100 ~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~evSa~~~~~i~~~f~~l~~~~  161 (188)
T cd04125         100 RYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-----------------LNIPFFETSAKQSINVEEAFILLVKLI  161 (188)
T ss_pred             HhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            432 24589999999999874  2333443333322                 245799999999999999999998753

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.91  E-value=2.6e-23  Score=140.34  Aligned_cols=131  Identities=18%  Similarity=0.297  Sum_probs=105.0

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+.. ...+.+++  +++++|||||+..+..++..+++++|++++|+|++++.+++.+..|+..+.+.....+
T Consensus        28 ~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  107 (164)
T cd04145          28 VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDE  107 (164)
T ss_pred             CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            34667888754 44555666  6899999999999999999999999999999999999999999999988876544457


Q ss_pred             CcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++++||+|+...  ....+.......                 .++.++++||++|.|++++|+++.+.+
T Consensus       108 ~piiiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         108 FPMILVGNKADLEHQRKVSREEGQELARK-----------------LKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCEEEEeeCccccccceecHHHHHHHHHH-----------------cCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            899999999998652  233344333332                 235789999999999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01868 Rab11_like Rab11-like

Probab=99.91  E-value=4.9e-23  Score=139.31  Aligned_cols=134  Identities=17%  Similarity=0.286  Sum_probs=107.4

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++.+ ..+.||.+..  ...+..++  +.+++||+||+..+..++..++++++++++|+|++++.++..+..|+..+..
T Consensus        24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (165)
T cd01868          24 TRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRD  103 (165)
T ss_pred             hcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            34443 4678999875  45566666  6899999999999999999999999999999999999999999999988865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ..++|+++|+||+|+.+  ....++.......                 .++.+++|||++|.|++++++++...+
T Consensus       104 ~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         104 HA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-----------------NGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             hC-CCCCeEEEEEECccccccccCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            43 34689999999999865  3344444444332                 346899999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=99.91  E-value=6.3e-23  Score=138.90  Aligned_cols=135  Identities=16%  Similarity=0.246  Sum_probs=106.6

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      ..+.+ ..+.||.+..  ...+.+++  +++++|||||++.+...+..+++++|++++|||++++.+++.+..|+..+..
T Consensus        24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~  103 (165)
T cd01864          24 KSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEK  103 (165)
T ss_pred             hhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence            34443 4567888754  56677777  6899999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ..+.|+++|+||+|+.+  .....+........                ....++++||++|.|++++|+++.+.+
T Consensus       104 ~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         104 YG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN----------------GMLAVLETSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             hC-CCCCcEEEEEECcccccccccCHHHHHHHHHHc----------------CCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence            32 35789999999999865  23334444433321                124689999999999999999998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0083|consensus

Probab=99.91  E-value=1.7e-24  Score=137.87  Aligned_cols=136  Identities=20%  Similarity=0.299  Sum_probs=109.8

Q ss_pred             CCCCCCC--CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHH
Q psy2161           1 MLKNDRT--AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS   74 (155)
Q Consensus         1 ~l~~~~~--~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~   74 (155)
                      |.|+|.+  ...++|+|+.  .+-++.++  +++++|||+||++|++....||++||+++++||+++..+|+....|+.+
T Consensus        16 r~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlse   95 (192)
T KOG0083|consen   16 RFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSE   95 (192)
T ss_pred             EeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHH
Confidence            4567764  4677899986  44455555  8999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          75 LLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        75 ~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +... ....+.+.+++||+|+..  .+..++-....+.                 ..+++.++|||+|-|++..|-.+++
T Consensus        96 i~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~-----------------y~ipfmetsaktg~nvd~af~~ia~  157 (192)
T KOG0083|consen   96 IHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA-----------------YGIPFMETSAKTGFNVDLAFLAIAE  157 (192)
T ss_pred             HHHH-HHhhHhHhhhccccccchhhccccchHHHHHHH-----------------HCCCceeccccccccHhHHHHHHHH
Confidence            9643 345688999999999843  4444444444443                 3458999999999999999998887


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       158 ~l  159 (192)
T KOG0083|consen  158 EL  159 (192)
T ss_pred             HH
Confidence            54

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.91  E-value=3.8e-23  Score=139.68  Aligned_cols=135  Identities=19%  Similarity=0.288  Sum_probs=105.7

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++.+ ..+.||.+.. ...+..++  +.+++|||||++++..++..++++++++++|+|++++++++.+..|...+.+.
T Consensus        21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~  100 (164)
T smart00173       21 VQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRV  100 (164)
T ss_pred             HhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            33443 4566777654 44555555  78999999999999999999999999999999999999999998888887765


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|+++|+||+|+..  .....++......                 .+..+++|||++|.|++++|++|.+.+
T Consensus       101 ~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  161 (164)
T smart00173      101 KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----------------WGCPFLETSAKERVNVDEAFYDLVREI  161 (164)
T ss_pred             cCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----------------cCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence            5455789999999999865  2333344333332                 235899999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN03110 Rab GTPase; Provisional

Probab=99.91  E-value=5.5e-23  Score=145.18  Aligned_cols=135  Identities=16%  Similarity=0.253  Sum_probs=108.1

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++.+ ..+.||+|..  ...+.+++  +.+++|||+|++++..++..++++++++++|||++++.+|+.+..|+..+.
T Consensus        32 l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  111 (216)
T PLN03110         32 FTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELR  111 (216)
T ss_pred             HhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence            344553 4678999986  46667766  799999999999999999999999999999999999999999999998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ..+.|+++|+||+|+..  .+..++.......                 ..+.++++||++|.|++++|+++.+.+
T Consensus       112 ~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-----------------~~~~~~e~SA~~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        112 DHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-----------------EGLSFLETSALEATNVEKAFQTILLEI  173 (216)
T ss_pred             HhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            542 35789999999999864  2333343333222                 346899999999999999999998754

>KOG0081|consensus

Probab=99.91  E-value=9.9e-24  Score=138.02  Aligned_cols=134  Identities=18%  Similarity=0.253  Sum_probs=113.6

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEEC-------C----EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMG-------D----IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES   68 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~-------~----~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~   68 (155)
                      ++|.+ .+.++|+|+.  .+.+.++       |    +.+++|||+||++|+++...||++|-+++++||+++.++|-++
T Consensus        30 TD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv  109 (219)
T KOG0081|consen   30 TDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV  109 (219)
T ss_pred             cCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHH
Confidence            44554 4567888875  5566652       1    7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161          69 KYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        69 ~~~l~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      +.|+..+..+.-+.++-+++.+||+|+.+  .++..+.......                 .+++|+++||-+|.|+++.
T Consensus       110 rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k-----------------yglPYfETSA~tg~Nv~ka  172 (219)
T KOG0081|consen  110 RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK-----------------YGLPYFETSACTGTNVEKA  172 (219)
T ss_pred             HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH-----------------hCCCeeeeccccCcCHHHH
Confidence            99999998887778889999999999987  5677777777766                 3568999999999999998


Q ss_pred             HHHHHhh
Q psy2161         147 FRWLANY  153 (155)
Q Consensus       147 ~~~l~~~  153 (155)
                      .+.|.+.
T Consensus       173 ve~Lldl  179 (219)
T KOG0081|consen  173 VELLLDL  179 (219)
T ss_pred             HHHHHHH
Confidence            8887654

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.91  E-value=8.7e-23  Score=137.69  Aligned_cols=136  Identities=17%  Similarity=0.309  Sum_probs=109.9

Q ss_pred             CCCCCCCc-ccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~~~-~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++++.. +.||.|..  ...+.+++  +++.+||+||++++...+..+++++|++++|+|+++++++.....|+..+.
T Consensus        21 l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  100 (163)
T cd01860          21 FVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQ  100 (163)
T ss_pred             HHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            34555544 78898864  45666665  789999999999999999999999999999999999999999999999887


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .... .+.|+++++||+|+.+  ..+..+.......                 .++.++++||++|.|+.+++++|.+.+
T Consensus       101 ~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         101 RNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----------------NGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             HhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            5543 6789999999999874  3345555444433                 236799999999999999999999877


Q ss_pred             C
Q psy2161         155 D  155 (155)
Q Consensus       155 ~  155 (155)
                      +
T Consensus       163 ~  163 (163)
T cd01860         163 P  163 (163)
T ss_pred             C
Confidence            4

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.90  E-value=6.1e-23  Score=142.79  Aligned_cols=126  Identities=16%  Similarity=0.163  Sum_probs=94.8

Q ss_pred             CCcccCCCCC-c--eeE--------EEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHH
Q psy2161           7 TAQHMPTLHP-T--SEE--------LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YEL   72 (155)
Q Consensus         7 ~~~~~pT~~~-~--~~~--------~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l   72 (155)
                      ...+.||+|. .  ...        +.+++  +++++|||+|++.  .....++++||++++|||++++.+|+.+. .|+
T Consensus        34 ~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~  111 (195)
T cd01873          34 LATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWY  111 (195)
T ss_pred             ccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHH
Confidence            3568899973 2  111        13444  8999999999975  35567899999999999999999999986 588


Q ss_pred             HHHHhCCCCCCCcEEEEEeCCCcCC---------------------cCCHHHHHhhhcccCccCCCcccccccccCccEE
Q psy2161          73 DSLLADDALTDVPILILGNKIDIFD---------------------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE  131 (155)
Q Consensus        73 ~~~~~~~~~~~~piilv~nK~Dl~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (155)
                      ..+....  ++.|+++|+||+|+.+                     .++.++..+....                 .++.
T Consensus       112 ~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~-----------------~~~~  172 (195)
T cd01873         112 PEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKE-----------------LGIP  172 (195)
T ss_pred             HHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHH-----------------hCCE
Confidence            8775432  4789999999999863                     1233333333222                 3468


Q ss_pred             EEEeeeccCCChHHHHHHHHhh
Q psy2161         132 LFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       132 ~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      |++|||++|.|++++|+.+++.
T Consensus       173 ~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         173 YYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHh
Confidence            9999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04140 ARHI_like ARHI subfamily

Probab=99.90  E-value=4.8e-23  Score=139.58  Aligned_cols=135  Identities=17%  Similarity=0.184  Sum_probs=102.1

Q ss_pred             CCCCCC-CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.++.+ ..+.||.+... ..+..++  +.+++|||||++++..++..++++++++++|||++++++++.+..|+..+..
T Consensus        21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~  100 (165)
T cd04140          21 FVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICE  100 (165)
T ss_pred             HHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            345554 46778887643 3334433  7899999999999999999999999999999999999999998888876643


Q ss_pred             CC--CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          78 DD--ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        78 ~~--~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..  ...+.|+++|+||+|+..  .+...+.......                 .++.+++|||++|.|++++|+||.+.
T Consensus       101 ~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         101 IKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATE-----------------WNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             HhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHH-----------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence            22  225789999999999865  2333333222222                 24578999999999999999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0076|consensus

Probab=99.90  E-value=2.3e-24  Score=142.64  Aligned_cols=136  Identities=29%  Similarity=0.576  Sum_probs=122.3

Q ss_pred             CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161           8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      ....||+|.+..++.+++..+.|||.+||+..+++|..||..|+++||++|+++++.|+.....++.+..+....++|++
T Consensus        51 ~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L  130 (197)
T KOG0076|consen   51 SKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVL  130 (197)
T ss_pred             HHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+||.|+.+.....++...++..           .....+...+.+|||.+|.||.+...|+...+
T Consensus       131 ~lankqd~q~~~~~~El~~~~~~~-----------e~~~~rd~~~~pvSal~gegv~egi~w~v~~~  186 (197)
T KOG0076|consen  131 VLANKQDLQNAMEAAELDGVFGLA-----------ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL  186 (197)
T ss_pred             hhcchhhhhhhhhHHHHHHHhhhh-----------hhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence            999999998877777887777641           12445678899999999999999999998765

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.90  E-value=7.3e-23  Score=139.37  Aligned_cols=134  Identities=20%  Similarity=0.311  Sum_probs=106.7

Q ss_pred             CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhH-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .+.+ ..+.||++..  ...+.+++  +.+++|||+|++.++ .++..+++++|++++|||++++.+|..+..|+..+..
T Consensus        24 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (170)
T cd04115          24 AGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQ  103 (170)
T ss_pred             hCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence            4443 4678898864  45566666  899999999999887 5789999999999999999999999999999988876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc---CCChHHHHHHHHh
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK---RQGFGNGFRWLAN  152 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~  152 (155)
                      .....++|+++|+||+|+.+  .+...+.......                 .++.+++|||++   +.|++++|..+++
T Consensus       104 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~  166 (170)
T cd04115         104 HSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA-----------------HSMPLFETSAKDPSENDHVEAIFMTLAH  166 (170)
T ss_pred             hcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH-----------------cCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence            55446799999999999865  3334443333332                 346899999999   8999999999987


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       167 ~~  168 (170)
T cd04115         167 KL  168 (170)
T ss_pred             Hh
Confidence            65

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.90  E-value=7.7e-23  Score=137.83  Aligned_cols=133  Identities=19%  Similarity=0.319  Sum_probs=105.6

Q ss_pred             CCCCC-CCcccCCCCCce--eEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPTS--EELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS   74 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~--~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~   74 (155)
                      +.++. ...+.||++...  ..+.++    ++++++|||||++.+...+..+++++|++++|+|++++++++.+..|+..
T Consensus        20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~   99 (162)
T cd04106          20 FVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEK   99 (162)
T ss_pred             HhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            34444 346788988763  445554    38999999999999999999999999999999999999999999999988


Q ss_pred             HHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          75 LLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        75 ~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +...  ..+.|+++|+||+|+..  .+..++.......                 .+++++++||++|.|+++++++|..
T Consensus       100 ~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         100 VEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----------------LQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             HHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            7542  35789999999999865  3444454444433                 2457999999999999999999986


Q ss_pred             h
Q psy2161         153 Y  153 (155)
Q Consensus       153 ~  153 (155)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01866 Rab2 Rab2 subfamily

Probab=99.90  E-value=1.4e-22  Score=137.75  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=107.0

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++++ ..+.||.|..  ...+..++  .++.+|||||++++...+..+++++|++++|+|++++.+++.+..|+.++..
T Consensus        25 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~  104 (168)
T cd01866          25 TDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ  104 (168)
T ss_pred             HcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            34443 4556788775  34555665  7899999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. .++.|+++|+||.|+.+  ..+.++.......                 .++.++++||++|.|++++|.++.+.+
T Consensus       105 ~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         105 HS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----------------HGLIFMETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             hC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            43 35789999999999874  3455555444433                 346799999999999999999998764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01863 Rab18 Rab18 subfamily

Probab=99.90  E-value=1.9e-22  Score=135.89  Aligned_cols=136  Identities=19%  Similarity=0.315  Sum_probs=109.3

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++.+ ..+.||.+..  ...+.+++  +++.+||+||++.+...+..+++++|++++|+|++++.+++.+..|+..+.
T Consensus        20 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~   99 (161)
T cd01863          20 FTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELE   99 (161)
T ss_pred             HHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence            344554 3478888875  34455655  789999999999999999999999999999999999999999988998887


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.....+.|+++|+||+|+.. ....++.......                 .++.++++||++|.|++++++++.+.+
T Consensus       100 ~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~~~~~~~~~~  161 (161)
T cd01863         100 TYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----------------HNMLFIETSAKTRDGVQQAFEELVEKI  161 (161)
T ss_pred             HhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----------------cCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            666567899999999999974 3344444444333                 356899999999999999999998754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PLN03118 Rab family protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=142.67  Aligned_cols=136  Identities=20%  Similarity=0.268  Sum_probs=104.5

Q ss_pred             CCCCCCCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH-HHHHHH
Q psy2161           2 LKNDRTAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDSLL   76 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~-~l~~~~   76 (155)
                      |.++.+..+.||.|..  ...+.+++  +++.+|||||++.+..++..+++++|++++|||++++++|+.+.. |...+.
T Consensus        34 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~  113 (211)
T PLN03118         34 FISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE  113 (211)
T ss_pred             HHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4456667888999875  45566665  789999999999999999999999999999999999999998865 444443


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ......+.|+++|+||+|+..  ....++.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       114 ~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-----------------~~~~~~e~SAk~~~~v~~l~~~l~~~~  176 (211)
T PLN03118        114 LYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-----------------HGCLFLECSAKTRENVEQCFEELALKI  176 (211)
T ss_pred             HhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            222334679999999999865  2333333333222                 345799999999999999999998754

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=2.3e-22  Score=135.54  Aligned_cols=133  Identities=24%  Similarity=0.375  Sum_probs=112.3

Q ss_pred             CCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           4 NDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         4 ~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ++. ...+.||.|..  ...+..++  +.+++||++|+..+...+..+++++|++|+|||++++++|+.+..|+..+...
T Consensus        21 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~  100 (162)
T PF00071_consen   21 NGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY  100 (162)
T ss_dssp             HSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344 45788999876  45566656  88999999999999999999999999999999999999999999999998755


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. .+.|+++++||.|+.+  .++.++.......                 .+..+++|||+++.|+.++|..+.+.+
T Consensus       101 ~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  101 KP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE-----------------LGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             ST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH-----------------TTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             cc-ccccceeeeccccccccccchhhHHHHHHHH-----------------hCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            43 4689999999999886  6677777666655                 336899999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04113 Rab4 Rab4 subfamily

Probab=99.90  E-value=3.8e-22  Score=134.47  Aligned_cols=134  Identities=20%  Similarity=0.286  Sum_probs=106.6

Q ss_pred             CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++. ...+.||.+..  ...+.+++  +.+++||+||++.+...+..+++++|++++|+|++++.++..+..|+..+..
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  100 (161)
T cd04113          21 VENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARA  100 (161)
T ss_pred             HhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3444 35567787764  34455555  7899999999999999999999999999999999999999999999987753


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . ..++.|+++++||+|+..  .....++......                 .++.++++||++|.|++++|+++++.+
T Consensus       101 ~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         101 L-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----------------NGLLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             h-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3 235789999999999865  3444555554443                 346899999999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.89  E-value=1.4e-22  Score=138.25  Aligned_cols=132  Identities=15%  Similarity=0.266  Sum_probs=100.4

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~   77 (155)
                      .++.+ ..+.||.+.. ...+..++  +.+++|||||++.+..++..+++++|++++|||++++++|+.+. .|+..+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~   98 (174)
T smart00174       19 TTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKH   98 (174)
T ss_pred             HhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34443 4567887665 34556666  68999999999999999999999999999999999999999885 58887764


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCC
Q psy2161          78 DDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQG  142 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  142 (155)
                      ..  +++|+++|+||+|+....              +.++......                 ..+ ..+++|||++|.|
T Consensus        99 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       99 FC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK-----------------RIGAVKYLECSALTQEG  159 (174)
T ss_pred             hC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH-----------------HcCCcEEEEecCCCCCC
Confidence            32  579999999999986421              1111111111                 122 3799999999999


Q ss_pred             hHHHHHHHHhh
Q psy2161         143 FGNGFRWLANY  153 (155)
Q Consensus       143 i~~~~~~l~~~  153 (155)
                      ++++|+.+.+.
T Consensus       160 v~~lf~~l~~~  170 (174)
T smart00174      160 VREVFEEAIRA  170 (174)
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.89  E-value=3.8e-22  Score=134.76  Aligned_cols=128  Identities=17%  Similarity=0.342  Sum_probs=101.7

Q ss_pred             CcccCCCCCc--eeEEEEC---CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ..+.||.|+.  ...+.+.   ..++++|||||++.+..++..+++++|++++|+|++++.+++.+..|+..+....  .
T Consensus        29 ~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~  106 (164)
T cd04101          29 KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--K  106 (164)
T ss_pred             ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--C
Confidence            5788999876  3445443   2899999999999999999999999999999999999999998899998876543  4


Q ss_pred             CCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+++|+||+|+.+.  ....+.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       107 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         107 HMPGVLVGNKMDLADKAEVTDAQAQAFAQA-----------------NQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            6899999999998652  233332222211                 235799999999999999999998754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04118 Rab24 Rab24 subfamily

Probab=99.89  E-value=2.6e-22  Score=139.24  Aligned_cols=134  Identities=19%  Similarity=0.270  Sum_probs=104.9

Q ss_pred             CCCCCCC--cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRTA--QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~~--~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      +.++.+.  .+.||+|..  ...+.+++  +++.+||++|++++..++..+++++|++++|||++++.+++.+..|+..+
T Consensus        20 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i   99 (193)
T cd04118          20 YVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL   99 (193)
T ss_pred             HHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            4455553  488999875  45677776  67889999999999999999999999999999999999999998999888


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCc------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161          76 LADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW  149 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  149 (155)
                      ....  .+.|+++|+||+|+.+.      +...++......                 .+..++++||++|.|++++|++
T Consensus       100 ~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118         100 QNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE-----------------IKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             HhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence            6432  46899999999998542      122233332222                 2457899999999999999999


Q ss_pred             HHhhc
Q psy2161         150 LANYI  154 (155)
Q Consensus       150 l~~~i  154 (155)
                      +.+.+
T Consensus       161 i~~~~  165 (193)
T cd04118         161 VAEDF  165 (193)
T ss_pred             HHHHH
Confidence            98653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.89  E-value=2e-22  Score=139.08  Aligned_cols=134  Identities=13%  Similarity=0.183  Sum_probs=102.9

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSL   75 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~   75 (155)
                      +.++++ ..+.||++.. ...+... +  +.+.+|||||++.+...+..++++||++++|||++++.+|+.+. .|+..+
T Consensus        20 l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~   99 (187)
T cd04132          20 YSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEV   99 (187)
T ss_pred             HHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            344553 5677888876 3445554 3  78999999999999999999999999999999999999998885 587776


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCc------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161          76 LADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  148 (155)
                      ...  ..+.|+++|+||+|+...      +...+..+....                 .++ .+++|||++|.|++++|+
T Consensus       100 ~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~e~Sa~~~~~v~~~f~  160 (187)
T cd04132         100 NHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK-----------------QGAFAYLECSAKTMENVEEVFD  160 (187)
T ss_pred             HHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH-----------------cCCcEEEEccCCCCCCHHHHHH
Confidence            532  247899999999998642      233344443332                 223 789999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       161 ~l~~~~  166 (187)
T cd04132         161 TAIEEA  166 (187)
T ss_pred             HHHHHH
Confidence            998754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0077|consensus

Probab=99.89  E-value=2.2e-23  Score=137.08  Aligned_cols=155  Identities=62%  Similarity=1.071  Sum_probs=144.8

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      +||+++...++||..++...+.++|.+++-+|.+|+..-+..|..|+..+|+++|.+|+.+.+.|.+.+..++.+++...
T Consensus        39 MLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~  118 (193)
T KOG0077|consen   39 MLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDES  118 (193)
T ss_pred             HHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ..+.|+++.+||+|.+.....++....+...+.+..++..+......+.+.++.||...+.+.-+.|.|+...++
T Consensus       119 la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~  193 (193)
T KOG0077|consen  119 LATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK  193 (193)
T ss_pred             HhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence            889999999999999998899999999998888878888887778888999999999999999999999988764

>cd04177 RSR1 RSR1 subgroup

Probab=99.89  E-value=2.4e-22  Score=136.58  Aligned_cols=136  Identities=16%  Similarity=0.227  Sum_probs=106.3

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++.+ ..+.||.+.. ...+.+++  +.+++|||||++++..+++.++++++++++|+|.+++++++....|...+...
T Consensus        22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~  101 (168)
T cd04177          22 VQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRI  101 (168)
T ss_pred             HhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34554 5677888765 45566665  78999999999999999999999999999999999999999998888888754


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|+++++||+|+.+  ....++........                ...+++++||++|.|++++|+++..++
T Consensus       102 ~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         102 KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQW----------------GNVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHc----------------CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4446799999999999865  22333333322221                125799999999999999999998754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PLN03108 Rab family protein; Provisional

Probab=99.89  E-value=5.1e-22  Score=139.69  Aligned_cols=135  Identities=20%  Similarity=0.291  Sum_probs=108.2

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++++ ..+.||++..  ...+.+++  +.+++|||+|++.+...+..+++++|++++|+|++++.+|+.+..|+..+.
T Consensus        26 l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~  105 (210)
T PLN03108         26 FTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR  105 (210)
T ss_pred             HHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence            344443 4567899876  44566666  789999999999999999999999999999999999999999989988876


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ....|+++|+||+|+..  ..+..+.......                 .++.++++||+++.|++++|+|+++.+
T Consensus       106 ~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        106 QHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             Hhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            433 35789999999999865  3455555555443                 346899999999999999999998653

>cd01861 Rab6 Rab6 subfamily

Probab=99.89  E-value=1.1e-21  Score=131.96  Aligned_cols=134  Identities=21%  Similarity=0.259  Sum_probs=105.8

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++.. ..+.||.+..  ...+.+++  +++++|||||+..+..++..+++++|++++|+|++++++|+.+..|+..+..
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~  100 (161)
T cd01861          21 MYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRD  100 (161)
T ss_pred             HcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            34443 3567888764  55666666  6899999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... .+.|+++++||+|+.+  ....++.......                 .++.++++||++|.|++++++++.+.+
T Consensus       101 ~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~i~~~l  161 (161)
T cd01861         101 ERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-----------------LNAMFIETSAKAGHNVKELFRKIASAL  161 (161)
T ss_pred             hCC-CCCEEEEEEEChhccccCccCHHHHHHHHHH-----------------hCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence            432 3689999999999854  2344444443332                 346899999999999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04124 RabL2 RabL2 subfamily

Probab=99.89  E-value=3.8e-22  Score=134.76  Aligned_cols=132  Identities=15%  Similarity=0.222  Sum_probs=99.9

Q ss_pred             CCCCC-CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++++ +.+.||.+...  ..+.+++  +.+++|||+|++.+..++..+++++|++++|+|++++.++..+..|+..+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (161)
T cd04124          21 LMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE  100 (161)
T ss_pred             HhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            34443 34556766542  3344554  7899999999999999999999999999999999999999998899988864


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .  .++.|+++|+||+|+.... ..+.......                 .+++++++||++|.|++++|+.+.+.+
T Consensus       101 ~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (161)
T cd04124         101 Y--RPEIPCIVVANKIDLDPSV-TQKKFNFAEK-----------------HNLPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             h--CCCCcEEEEEECccCchhH-HHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3  2468999999999984321 1122221111                 246899999999999999999998753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0097|consensus

Probab=99.89  E-value=6.1e-22  Score=127.51  Aligned_cols=125  Identities=18%  Similarity=0.242  Sum_probs=106.2

Q ss_pred             ccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161          10 HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP   85 (155)
Q Consensus        10 ~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p   85 (155)
                      -.-|+|+.  .+.+++.|  +++++|||+|+++|+...+.||++|.+.+.|+|++...++..+..|+.+..+ ...++.-
T Consensus        40 cphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~-ltnpnt~  118 (215)
T KOG0097|consen   40 CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNPNTV  118 (215)
T ss_pred             CCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhc-cCCCceE
Confidence            34578875  67777766  8999999999999999999999999999999999999999999999988843 3446678


Q ss_pred             EEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          86 ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        86 iilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +++++||.|+..  .++.++..++.+.                 .++.++++|||+|.|+++.|-..++
T Consensus       119 i~lignkadle~qrdv~yeeak~faee-----------------ngl~fle~saktg~nvedafle~ak  170 (215)
T KOG0097|consen  119 IFLIGNKADLESQRDVTYEEAKEFAEE-----------------NGLMFLEASAKTGQNVEDAFLETAK  170 (215)
T ss_pred             EEEecchhhhhhcccCcHHHHHHHHhh-----------------cCeEEEEecccccCcHHHHHHHHHH
Confidence            999999999976  5678888888777                 4578999999999999998866544

>cd04148 RGK RGK subfamily

Probab=99.88  E-value=8.7e-22  Score=139.49  Aligned_cols=134  Identities=17%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             CCCCCC--CcccCCCC--CceeEEEECC--EEEEEEEcCCChhhHHhHHhhcC-CCCEEEEEEECCCCCchHHHHHHHHH
Q psy2161           2 LKNDRT--AQHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFP-AVDAIVFIIDASDRSRFPESKYELDS   74 (155)
Q Consensus         2 l~~~~~--~~~~pT~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~-~ad~ii~v~D~~~~~~~~~~~~~l~~   74 (155)
                      +..|++  ..+.||.+  .....+.+++  +++.+|||+|+.  ......+++ ++|++++|||++++.+|+.+..|+..
T Consensus        20 ~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~   97 (221)
T cd04148          20 FTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQ   97 (221)
T ss_pred             HhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            345555  56778886  3456677755  889999999998  333445666 99999999999999999999999988


Q ss_pred             HHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          75 LLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        75 ~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +.......++|+++|+||+|+..  .+..++.......                 .++.++++||++|.|++++|+++.+
T Consensus        98 l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~SA~~~~gv~~l~~~l~~  160 (221)
T cd04148          98 LRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV-----------------FDCKFIETSAGLQHNVDELLEGIVR  160 (221)
T ss_pred             HHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHH
Confidence            87654446799999999999864  2333333332222                 2457999999999999999999987


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       161 ~~  162 (221)
T cd04148         161 QI  162 (221)
T ss_pred             HH
Confidence            64

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0088|consensus

Probab=99.88  E-value=4e-23  Score=135.08  Aligned_cols=118  Identities=19%  Similarity=0.266  Sum_probs=99.9

Q ss_pred             eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          18 SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        18 ~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      .+.+.+.+  ..+.+|||+||++|..+.+.||++++++++|||+++.++|+.++.|..++..-.. ..+.+++|+||+||
T Consensus        52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDL  130 (218)
T KOG0088|consen   52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDL  130 (218)
T ss_pred             hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccH
Confidence            34455544  7899999999999999999999999999999999999999999999999964332 46789999999999


Q ss_pred             CC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          96 FD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        96 ~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+  .++.++...+.+.                 -+-.+.++||+.+.||.|+|+.|...
T Consensus       131 EeeR~Vt~qeAe~YAes-----------------vGA~y~eTSAk~N~Gi~elFe~Lt~~  173 (218)
T KOG0088|consen  131 EEERQVTRQEAEAYAES-----------------VGALYMETSAKDNVGISELFESLTAK  173 (218)
T ss_pred             HHhhhhhHHHHHHHHHh-----------------hchhheecccccccCHHHHHHHHHHH
Confidence            76  6777777777665                 23478999999999999999988754

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.88  E-value=1.6e-21  Score=131.42  Aligned_cols=129  Identities=22%  Similarity=0.321  Sum_probs=105.6

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +++++||+||+..+...+..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~  105 (164)
T smart00175       27 EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PN  105 (164)
T ss_pred             CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CC
Confidence            4566888865  45667766  7899999999999999999999999999999999999999999899988865432 57


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+..  ....+.+.+....                 .+++++++||++|.|++++++++.+.+
T Consensus       106 ~pivvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      106 VVIMLVGNKSDLEDQRQVSREEAEAFAEE-----------------HGLPFFETSAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             CeEEEEEEchhcccccCCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999865  3344555554433                 346799999999999999999998764

Rab GTPases are implicated in vesicle trafficking.

>cd01892 Miro2 Miro2 subfamily

Probab=99.88  E-value=9.5e-22  Score=133.92  Aligned_cols=132  Identities=17%  Similarity=0.167  Sum_probs=101.0

Q ss_pred             CCCCCC--CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRT--AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~--~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      +.++.+  ..+.||++..  ...+.+++  +.+.+||++|+..+..++..+++++|++++|+|++++.+++.+..|+..+
T Consensus        24 ~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~  103 (169)
T cd01892          24 FLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKY  103 (169)
T ss_pred             HhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence            456665  5789999975  45677777  78999999999999999999999999999999999999998888888765


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHh
Q psy2161          76 LADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..   ..++|+++|+||+|+.+..  ...+..+....                 .++ .++++||++|.|++++|+.+.+
T Consensus       104 ~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~~v~~lf~~l~~  163 (169)
T cd01892         104 FM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK-----------------LGLPPPLHFSSKLGDSSNELFTKLAT  163 (169)
T ss_pred             cc---CCCCeEEEEEEcccccccccccccCHHHHHHH-----------------cCCCCCEEEEeccCccHHHHHHHHHH
Confidence            32   2368999999999986421  11111221111                 111 3589999999999999999987


Q ss_pred             h
Q psy2161         153 Y  153 (155)
Q Consensus       153 ~  153 (155)
                      .
T Consensus       164 ~  164 (169)
T cd01892         164 A  164 (169)
T ss_pred             H
Confidence            4

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0393|consensus

Probab=99.88  E-value=2.9e-22  Score=137.12  Aligned_cols=142  Identities=18%  Similarity=0.289  Sum_probs=110.1

Q ss_pred             CCcccCCCCCc-eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDAL   81 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~   81 (155)
                      .+.|+||+..+ ...+.++ |  +.+.+|||+||+.|..+++..|.++|++++||++.++.+|+++ ..|+.++..+  .
T Consensus        30 p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--c  107 (198)
T KOG0393|consen   30 PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--C  107 (198)
T ss_pred             cccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--C
Confidence            46899999876 6778884 6  8999999999999999999999999999999999999999987 5999999644  3


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ++.|++|||+|.||++.....+-.........+..++..+.+++..  ..|++|||++..|+.++|+...+
T Consensus       108 p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga--~~y~EcSa~tq~~v~~vF~~a~~  176 (198)
T KOG0393|consen  108 PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA--VKYLECSALTQKGVKEVFDEAIR  176 (198)
T ss_pred             CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc--ceeeeehhhhhCCcHHHHHHHHH
Confidence            7899999999999984221111111112333344444455555554  67999999999999999987654

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=6.5e-22  Score=133.93  Aligned_cols=130  Identities=19%  Similarity=0.281  Sum_probs=98.4

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-CC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-LT   82 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~~   82 (155)
                      ..+.||.+.. ...+.+++  +++++||+||+.. +...+..+++++|++++|+|++++.+|+.+..|+..+..... ..
T Consensus        26 ~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  105 (165)
T cd04146          26 GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDR  105 (165)
T ss_pred             cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4667877543 44555655  6899999999885 345677889999999999999999999999888877764332 34


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC-CChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR-QGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+..  .+..++.......                 .+..+++|||++| .|++++|+++++.+
T Consensus       106 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         106 EIPVILVGNKADLLHYRQVSTEEGEKLASE-----------------LGCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CCCEEEEEECCchHHhCccCHHHHHHHHHH-----------------cCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            789999999999854  3344444443332                 2357999999999 59999999998754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01862 Rab7 Rab7 subfamily

Probab=99.88  E-value=3.6e-21  Score=130.78  Aligned_cols=130  Identities=19%  Similarity=0.324  Sum_probs=103.3

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC---
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA---   80 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~---   80 (155)
                      ..+.||.+..  ...+.+++  +++++||+||++.+...+..+++++|++++|+|++++.+++....|...++....   
T Consensus        27 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  106 (172)
T cd01862          27 NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSD  106 (172)
T ss_pred             cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccC
Confidence            4556788764  45566666  7888999999999999999999999999999999999999888888877654332   


Q ss_pred             CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          81 LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..++|+++|+||+|+..  ....+++...+...                ....++++||++|.|++++++++.+.
T Consensus       107 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~l~~~i~~~  165 (172)
T cd01862         107 PENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----------------GNIPYFETSAKEAINVEQAFETIARK  165 (172)
T ss_pred             CCCceEEEEEECcccccccccCHHHHHHHHHHc----------------CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            23789999999999973  44555555554431                23689999999999999999998864

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04142 RRP22 RRP22 subfamily

Probab=99.88  E-value=2.2e-21  Score=135.31  Aligned_cols=136  Identities=15%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPES   68 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~   68 (155)
                      +.++++ ..+.||.+..  ...+.+++  +++++|||||...+        ......++++||++++|||++++++|+.+
T Consensus        20 ~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~   99 (198)
T cd04142          20 FLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYV   99 (198)
T ss_pred             HHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHH
Confidence            445554 4588999864  34566777  78999999996532        11234567899999999999999999999


Q ss_pred             HHHHHHHHhCC--CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          69 KYELDSLLADD--ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        69 ~~~l~~~~~~~--~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      ..|+..+....  ...++|+++|+||+|+..  ....++.......                ..++.+++|||++|.|++
T Consensus       100 ~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~e~Sak~g~~v~  163 (198)
T cd04142         100 KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK----------------SWKCGYLECSAKYNWHIL  163 (198)
T ss_pred             HHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH----------------hcCCcEEEecCCCCCCHH
Confidence            99988887543  245789999999999965  2233333322211                134689999999999999


Q ss_pred             HHHHHHHhh
Q psy2161         145 NGFRWLANY  153 (155)
Q Consensus       145 ~~~~~l~~~  153 (155)
                      ++|+.+.+.
T Consensus       164 ~lf~~i~~~  172 (198)
T cd04142         164 LLFKELLIS  172 (198)
T ss_pred             HHHHHHHHH
Confidence            999998864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.88  E-value=2e-21  Score=135.46  Aligned_cols=136  Identities=17%  Similarity=0.186  Sum_probs=104.6

Q ss_pred             CCCCC-CcccCCCCC-ceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++.+ ..+.||.+. ....+.+++  +++++||+||+..+..++..+++++|++++|||++++.+++.+..|+..+...
T Consensus        20 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~   99 (198)
T cd04147          20 LYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEV   99 (198)
T ss_pred             HhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34443 345677753 355677777  78999999999999999999999999999999999999999999998888765


Q ss_pred             CCCCCCcEEEEEeCCCcCCc---CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....++|+++|+||+|+...   +...+..+....                ..+..++++||++|.|++++|+++.+.+
T Consensus       100 ~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  162 (198)
T cd04147         100 KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----------------DWNCGFVETSAKDNENVLEVFKELLRQA  162 (198)
T ss_pred             cCCCCCcEEEEEEccccccccccccHHHHHHHHHh----------------hcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            55467999999999998542   222232222211                1234789999999999999999998754

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.88  E-value=1.3e-21  Score=133.53  Aligned_cols=129  Identities=15%  Similarity=0.251  Sum_probs=96.9

Q ss_pred             CCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhC
Q psy2161           4 NDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLAD   78 (155)
Q Consensus         4 ~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~   78 (155)
                      ++. ...+.||.... ...+..++  +++++|||||++.+...+..+++++|++++|||++++.+|+... .|+..+...
T Consensus        22 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~  101 (173)
T cd04130          22 TNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH  101 (173)
T ss_pred             hCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            344 34677886443 34566666  78999999999999999999999999999999999999998874 688777542


Q ss_pred             CCCCCCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCCh
Q psy2161          79 DALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGF  143 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  143 (155)
                        ..+.|+++++||+|+....              ..++......                 ..+ ..+++|||++|.|+
T Consensus       102 --~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----------------~~~~~~~~e~Sa~~~~~v  162 (173)
T cd04130         102 --NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE-----------------KIGACEYIECSALTQKNL  162 (173)
T ss_pred             --CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH-----------------HhCCCeEEEEeCCCCCCH
Confidence              2468999999999985421              1112222111                 123 38999999999999


Q ss_pred             HHHHHHHH
Q psy2161         144 GNGFRWLA  151 (155)
Q Consensus       144 ~~~~~~l~  151 (155)
                      +++|+.+.
T Consensus       163 ~~lf~~~~  170 (173)
T cd04130         163 KEVFDTAI  170 (173)
T ss_pred             HHHHHHHH
Confidence            99999875

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04123 Rab21 Rab21 subfamily

Probab=99.87  E-value=4.6e-21  Score=128.80  Aligned_cols=128  Identities=21%  Similarity=0.330  Sum_probs=101.0

Q ss_pred             cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      .+.||.+..  ...+.+++  ..+.+||+||+..+...+..+++++|++++|+|++++++++....|+.++..... .++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~  106 (162)
T cd04123          28 KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNI  106 (162)
T ss_pred             CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence            455666553  34455555  6899999999999999999999999999999999999999998889888865433 378


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+..  .....++......                 .++.++++||++|.|++++++|+.+.+
T Consensus       107 piiiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         107 SLVIVGNKIDLERQRVVSKSEAEEYAKS-----------------VGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             eEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999865  3344444444333                 345789999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0395|consensus

Probab=99.87  E-value=5.5e-21  Score=132.69  Aligned_cols=136  Identities=23%  Similarity=0.297  Sum_probs=114.8

Q ss_pred             CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +..++ ...|.||++.. .+.+.+++  ..+.++||+|++.+..+...|+++++++++||++++..||+.+..++..++.
T Consensus        23 f~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r  102 (196)
T KOG0395|consen   23 FLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR  102 (196)
T ss_pred             ecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            34455 46789999974 67777776  8999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .......|+++|+||+|+..  .++.++.......                 ..+.++++||+...|++++|..|.+.+
T Consensus       103 ~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~-----------------~~~~f~E~Sak~~~~v~~~F~~L~r~~  164 (196)
T KOG0395|consen  103 VKGRDDVPIILVGNKCDLERERQVSEEEGKALARS-----------------WGCAFIETSAKLNYNVDEVFYELVREI  164 (196)
T ss_pred             hhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh-----------------cCCcEEEeeccCCcCHHHHHHHHHHHH
Confidence            66667789999999999976  5666665554333                 346799999999999999999998754

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.87  E-value=9.1e-21  Score=127.68  Aligned_cols=130  Identities=18%  Similarity=0.281  Sum_probs=103.3

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ......++  +.+.+||+||+..+...+..+++.++++++|+|++++.++.....|+..+.......++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  106 (164)
T cd04139          27 EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNV  106 (164)
T ss_pred             cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4566777764 34445554  78999999999999999999999999999999999999999998898888765444679


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  .....+.......                 .+.+++++||++|.|++++|+++.+++
T Consensus       107 piiiv~NK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         107 PLLLVGNKCDLEDKRQVSSEEAANLARQ-----------------WGVPYVETSAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             CEEEEEEccccccccccCHHHHHHHHHH-----------------hCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9999999999865  2333333333332                 235799999999999999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.86  E-value=8.6e-21  Score=129.44  Aligned_cols=148  Identities=14%  Similarity=0.230  Sum_probs=101.5

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      +.++.+ ..+.||.+.. ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++++|+.+. .|+..+.
T Consensus        21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~  100 (175)
T cd01870          21 FSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK  100 (175)
T ss_pred             HhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            445554 4688999875 45666665  68999999999999999888999999999999999999998875 5777665


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  ..+.|+++|+||+|+...... .++.. ..........+....  .......+++|||++|.|++++|+++.+..
T Consensus       101 ~~--~~~~piilv~nK~Dl~~~~~~~~~i~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         101 HF--CPNVPIILVGNKKDLRNDEHTRRELAK-MKQEPVKPEEGRDMA--NKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hh--CCCCCEEEEeeChhcccChhhhhhhhh-ccCCCccHHHHHHHH--HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            32  247899999999998642111 11110 000000000000000  001234799999999999999999998653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04135 Tc10 TC10 subfamily

Probab=99.86  E-value=9e-21  Score=129.23  Aligned_cols=147  Identities=18%  Similarity=0.237  Sum_probs=99.8

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~   77 (155)
                      ..+++ ..+.||.+.. ...+..++  +.+.+|||||+..+...+..+++++|++++|+|.+++.+|+... .|+..+..
T Consensus        21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~  100 (174)
T cd04135          21 ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE  100 (174)
T ss_pred             HhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34554 4577887654 44566666  67899999999999999999999999999999999999998875 56666643


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .  ..+.|+++|+||+|+.+................+...+.   ..... ....+++|||++|.|++++|+.+++.+
T Consensus       101 ~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         101 Y--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQ---KLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             h--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHH---HHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            3  467999999999998542111111111110000000000   00111 123689999999999999999998753

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.86  E-value=2e-20  Score=128.31  Aligned_cols=135  Identities=19%  Similarity=0.250  Sum_probs=106.7

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++.+ ..+.||.+.. ...+.+++  +.+++|||||+.++...+..++..++++++|+|.++..+++.+..|+..+++.
T Consensus        22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  101 (180)
T cd04137          22 VEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM  101 (180)
T ss_pred             HhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34444 3577888764 56666765  67899999999999999999999999999999999999999999998888776


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|+++++||+|+..  .....+.......                 ..+.++++||++|.|+.+++.++.+.+
T Consensus       102 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (180)
T cd04137         102 LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES-----------------WGAAFLESSARENENVEEAFELLIEEI  162 (180)
T ss_pred             cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5556789999999999864  2333333333322                 235789999999999999999998754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=99.86  E-value=2.8e-20  Score=124.15  Aligned_cols=132  Identities=19%  Similarity=0.315  Sum_probs=104.9

Q ss_pred             CCCCCC-cccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~~-~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++... .+.||.+...  ..+..++  ..+.+||+||+..+...+..+++++|++++|+|++++++++.+..|+..+..
T Consensus        21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  100 (159)
T cd00154          21 VDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKE  100 (159)
T ss_pred             HhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            344433 3578888764  4444434  8899999999999999999999999999999999998899999899988865


Q ss_pred             CCCCCCCcEEEEEeCCCcC--CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          78 DDALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      .. ..+.|+++++||+|+.  .....+++......                 ...+++++||+++.|++++++++.+
T Consensus       101 ~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154         101 YA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----------------NGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             hC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----------------cCCeEEEEecCCCCCHHHHHHHHhC
Confidence            43 2568999999999995  34455555554443                 3568999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04114 Rab30 Rab30 subfamily

Probab=99.85  E-value=5e-20  Score=124.94  Aligned_cols=128  Identities=18%  Similarity=0.230  Sum_probs=98.6

Q ss_pred             cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      .+.||++..  ...+.+++  +.+.+||+||+..+...+..+++.+|++++|+|+++..++..+..|+..+... ...+.
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~  113 (169)
T cd04114          35 GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ANNKV  113 (169)
T ss_pred             CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCC
Confidence            456777743  45667766  77999999999999999999999999999999999988998888888776432 23468


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  .............                 ....+++|||++|.|+.++|+++.+.+
T Consensus       114 ~~i~v~NK~D~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         114 ITILVGNKIDLAERREVSQQRAEEFSDA-----------------QDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999864  2222222222221                 235799999999999999999998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01893 Miro1 Miro1 subfamily

Probab=99.85  E-value=3.3e-20  Score=125.84  Aligned_cols=135  Identities=17%  Similarity=0.227  Sum_probs=95.7

Q ss_pred             CCCCCCCcccCCCCC-ceeEEEE--CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161           2 LKNDRTAQHMPTLHP-TSEELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA   77 (155)
Q Consensus         2 l~~~~~~~~~pT~~~-~~~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~   77 (155)
                      +.++.+....|+... ......+  .++++++|||||+..+...+..+++.+|++++|||++++.+++.+. .|+..+..
T Consensus        20 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~   99 (166)
T cd01893          20 LVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR   99 (166)
T ss_pred             HHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            445665444444333 2333344  3489999999999988888888999999999999999999998875 57666643


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          78 DDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..  .+.|+++|+||+|+.+....    .++......              .. ....+++|||++|.|++++|+.+.+.
T Consensus       100 ~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         100 LG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--------------FR-EIETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             hC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--------------Hh-cccEEEEeccccccCHHHHHHHHHHH
Confidence            32  37899999999999763321    222221111              00 11268999999999999999998864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.84  E-value=2.3e-19  Score=120.30  Aligned_cols=131  Identities=19%  Similarity=0.277  Sum_probs=104.4

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+.. ...+..++  +++++||+||+..+...+..+++++|++++|+|+++++++.....|+..+........
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  104 (160)
T cd00876          25 VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDED  104 (160)
T ss_pred             CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35667777643 44555664  7899999999999999999999999999999999999999998888888876544457


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++++||+|+..  ....+++......                 ...+++++||+++.|+.+++++|.+.+
T Consensus       105 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         105 IPIVLVGNKCDLENERQVSKEEGKALAKE-----------------WGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             CcEEEEEECCcccccceecHHHHHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence            99999999999875  2344454444443                 225799999999999999999998764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.83  E-value=2e-19  Score=126.87  Aligned_cols=132  Identities=19%  Similarity=0.355  Sum_probs=103.9

Q ss_pred             CCCC-CcccCCCCCceeEEEE--C--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           4 NDRT-AQHMPTLHPTSEELSM--G--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         4 ~~~~-~~~~pT~~~~~~~~~~--~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .|.+ ..+.||+|.......+  +  ++.+++|||+|+..+...+..++++++++++|+|+++..+|..+..|+..+...
T Consensus        31 ~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~  110 (215)
T PTZ00132         31 TGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV  110 (215)
T ss_pred             hCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            4443 5788999987555543  3  389999999999999999999999999999999999999999999999888643


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                        ..+.|+++++||+|+.+.....+.......                 .++.++++||++|.|++++|.++++.+
T Consensus       111 --~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~~~f~~ia~~l  167 (215)
T PTZ00132        111 --CENIPIVLVGNKVDVKDRQVKARQITFHRK-----------------KNLQYYDISAKSNYNFEKPFLWLARRL  167 (215)
T ss_pred             --CCCCCEEEEEECccCccccCCHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence              257899999999998653222222222222                 346899999999999999999998754

>cd00157 Rho Rho (Ras homology) family

Probab=99.83  E-value=1.2e-19  Score=123.17  Aligned_cols=132  Identities=20%  Similarity=0.329  Sum_probs=97.1

Q ss_pred             CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~   77 (155)
                      .++.+ ..+.||.... ...+...+  +.+++||+||+..+...+..+++.+|++++|||.+++.++.... .|+..+..
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  100 (171)
T cd00157          21 TTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH  100 (171)
T ss_pred             HhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            34443 5667777654 34445554  78999999999988888888899999999999999988887764 56666654


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcCC-------------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          78 DDALTDVPILILGNKIDIFDAAS-------------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      ..  .++|+++|+||+|+.+...             ..+..+....                .....++++||++|.|++
T Consensus       101 ~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~  162 (171)
T cd00157         101 YC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE----------------IGAIGYMECSALTQEGVK  162 (171)
T ss_pred             hC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH----------------hCCeEEEEeecCCCCCHH
Confidence            32  3799999999999875332             2222222222                122389999999999999


Q ss_pred             HHHHHHHh
Q psy2161         145 NGFRWLAN  152 (155)
Q Consensus       145 ~~~~~l~~  152 (155)
                      ++++++.+
T Consensus       163 ~l~~~i~~  170 (171)
T cd00157         163 EVFEEAIR  170 (171)
T ss_pred             HHHHHHhh
Confidence            99999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01890 LepA LepA subfamily

Probab=99.82  E-value=3.4e-19  Score=121.96  Aligned_cols=112  Identities=19%  Similarity=0.234  Sum_probs=82.3

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV  104 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i  104 (155)
                      ++++++|||||+..+...+..+++++|++++|+|+++..++.....|.... .    .++|+++|+||+|+.+.. ....
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~-~~~~  139 (179)
T cd01890          66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD-PERV  139 (179)
T ss_pred             cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC-HHHH
Confidence            488999999999999999999999999999999998876665554443322 1    368999999999986422 1111


Q ss_pred             HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      .+.+..             ........++++||++|.|++++++++.+.++
T Consensus       140 ~~~~~~-------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         140 KQQIED-------------VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HHHHHH-------------HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            111111             01112235899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04129 Rho2 Rho2 subfamily

Probab=99.81  E-value=1.6e-18  Score=119.80  Aligned_cols=128  Identities=13%  Similarity=0.217  Sum_probs=95.5

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+..++  ..+.+||++|+..+...+..+++.++++++|+|+++.++|+.+. .|+..+....  ++
T Consensus        28 ~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~  105 (187)
T cd04129          28 EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PN  105 (187)
T ss_pred             cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence            4566777664 44566666  67999999999988877777889999999999999999998886 6888876433  46


Q ss_pred             CcEEEEEeCCCcCCcC------------CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          84 VPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .|+++|+||+|+.+..            ..++.......                .....+++|||++|.|++++|+++.
T Consensus       106 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~~f~~l~  169 (187)
T cd04129         106 VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE----------------IGAKKYMECSALTGEGVDDVFEAAT  169 (187)
T ss_pred             CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH----------------hCCcEEEEccCCCCCCHHHHHHHHH
Confidence            9999999999985311            11111111111                0124799999999999999999998


Q ss_pred             hh
Q psy2161         152 NY  153 (155)
Q Consensus       152 ~~  153 (155)
                      +.
T Consensus       170 ~~  171 (187)
T cd04129         170 RA  171 (187)
T ss_pred             HH
Confidence            64

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.80  E-value=5.8e-19  Score=123.28  Aligned_cols=96  Identities=16%  Similarity=0.282  Sum_probs=79.3

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEEC-------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMG-------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE   71 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~   71 (155)
                      +.++.+ ..+.||+|..  .+.+.++       .+.+++|||+|++.++.++..||+++|++|+|||++++.+|+.+..|
T Consensus        20 ~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W   99 (202)
T cd04102          20 ICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRW   99 (202)
T ss_pred             HHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHH
Confidence            445554 4678999964  4455552       27899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC------------------CCCCCcEEEEEeCCCcCC
Q psy2161          72 LDSLLADD------------------ALTDVPILILGNKIDIFD   97 (155)
Q Consensus        72 l~~~~~~~------------------~~~~~piilv~nK~Dl~~   97 (155)
                      +.++....                  ...+.|+++|+||+|+.+
T Consensus       100 ~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102         100 SLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             HHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            99987532                  124689999999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.80  E-value=2.1e-18  Score=116.83  Aligned_cols=124  Identities=15%  Similarity=0.213  Sum_probs=84.4

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhh----H-----HhHHhhcCCCCEEEEEEECCCCCch--HHHHHHHHHHHhCCC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQA----R-----RVWRDYFPAVDAIVFIIDASDRSRF--PESKYELDSLLADDA   80 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~----~-----~~~~~~~~~ad~ii~v~D~~~~~~~--~~~~~~l~~~~~~~~   80 (155)
                      +|.+.....+.++++++++|||||+...    +     .........+|++++|+|+++..++  +....|+..+...  
T Consensus        33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--  110 (168)
T cd01897          33 TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--  110 (168)
T ss_pred             cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--
Confidence            4566666667777899999999997320    0     1111111236899999999887554  5556677776432  


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+.....+..+..                 ....+.+++|||++|.|++++++++.+.+
T Consensus       111 ~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         111 FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----------------ELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             cCcCCeEEEEEccccCchhhHHHHHHhh-----------------hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            2478999999999986532222211211                 12356799999999999999999998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.78  E-value=1.1e-17  Score=117.03  Aligned_cols=150  Identities=19%  Similarity=0.290  Sum_probs=105.9

Q ss_pred             CCCCCCCcccCCCCCceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCC-CEEEEEEECCCC-CchHHHHHHHHHH
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAV-DAIVFIIDASDR-SRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~a-d~ii~v~D~~~~-~~~~~~~~~l~~~   75 (155)
                      |.+++...+.|++..+...+...    +..+.+||+||+.+++..+..+++.+ +++|||+|+++. .++..+..++..+
T Consensus        20 l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~i   99 (203)
T cd04105          20 LTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDI   99 (203)
T ss_pred             HhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHH
Confidence            45666666667666665555543    58899999999999999999999999 999999999987 6777777777666


Q ss_pred             HhCCC--CCCCcEEEEEeCCCcCCcCCHHHHHhhhccc----------Cc---cCCC-----------cccccccccCcc
Q psy2161          76 LADDA--LTDVPILILGNKIDIFDAASEDEVRHFFGLY----------GL---TTGK-----------EFTSREILQMRP  129 (155)
Q Consensus        76 ~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~----------~~---~~~~-----------~~~~~~~~~~~~  129 (155)
                      +....  ..++|+++++||+|+....+...+.+.++.+          .+   ....           ..+.+. ....+
T Consensus       100 l~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~-~~~~~  178 (203)
T cd04105         100 LTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFD-QLEGK  178 (203)
T ss_pred             HHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeec-cCcee
Confidence            54321  2579999999999997755555444444321          00   0000           011122 12347


Q ss_pred             EEEEEeeeccCC-ChHHHHHHHHh
Q psy2161         130 IELFMCSVLKRQ-GFGNGFRWLAN  152 (155)
Q Consensus       130 ~~~~~~Sa~~~~-~i~~~~~~l~~  152 (155)
                      +.+++||++.+. |++...+|+.+
T Consensus       179 v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         179 VEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             EEEEEeEEecCCCChHhHHHHHhh
Confidence            789999999876 69999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01898 Obg Obg subfamily

Probab=99.77  E-value=6.2e-18  Score=114.65  Aligned_cols=127  Identities=21%  Similarity=0.292  Sum_probs=88.8

Q ss_pred             CCCCCceeEEEECCE-EEEEEEcCCCh----hhHHhHHh---hcCCCCEEEEEEECCCC-CchHHHHHHHHHHHhCC-CC
Q psy2161          12 PTLHPTSEELSMGDI-VFTTHDLGGHV----QARRVWRD---YFPAVDAIVFIIDASDR-SRFPESKYELDSLLADD-AL   81 (155)
Q Consensus        12 pT~~~~~~~~~~~~~-~~~~~Dt~G~~----~~~~~~~~---~~~~ad~ii~v~D~~~~-~~~~~~~~~l~~~~~~~-~~   81 (155)
                      +|.......+.+++. ++.+|||||..    ..+.+...   .++.+|++++|+|++++ .+++....|.+.+.... ..
T Consensus        33 ~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~  112 (170)
T cd01898          33 TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL  112 (170)
T ss_pred             cccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc
Confidence            355555566677775 99999999963    11122223   34569999999999998 78888888887775432 12


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHH-HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDE-VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+.....+ +......                ....+++++||+++.|++++++++.+.+
T Consensus       113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         113 LEKPRIVVLNKIDLLDEEELFELLKELLKE----------------LWGKPVFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             cccccEEEEEchhcCCchhhHHHHHHHHhh----------------CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence            4689999999999865333222 2222221                0245789999999999999999998754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04171 SelB SelB subfamily

Probab=99.76  E-value=1.6e-17  Score=111.76  Aligned_cols=122  Identities=17%  Similarity=0.192  Sum_probs=82.7

Q ss_pred             CCCCceeEEEEC-CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          13 TLHPTSEELSMG-DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        13 T~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      |++.....+.++ +.++++|||||++++......+++++|++++|+|+++... ......+... ...  ..+|+++++|
T Consensus        37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~N  112 (164)
T cd04171          37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLT  112 (164)
T ss_pred             eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEE
Confidence            444445566666 7899999999999998877888999999999999976321 1122222222 111  2359999999


Q ss_pred             CCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          92 KIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        92 K~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      |+|+.+...    ..++.+.+..              ......+++++||++|.|++++++++..
T Consensus       113 K~Dl~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         113 KADLVDEDWLELVEEEIRELLAG--------------TFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CccccCHHHHHHHHHHHHHHHHh--------------cCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            999865321    1222222221              1113468999999999999999999865

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=1.7e-17  Score=123.77  Aligned_cols=127  Identities=19%  Similarity=0.263  Sum_probs=93.3

Q ss_pred             cCCCCCceeEEEE-CCEEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-CC
Q psy2161          11 MPTLHPTSEELSM-GDIVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-AL   81 (155)
Q Consensus        11 ~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-~~   81 (155)
                      -+|..++...+.+ ++.++.+||+||...       ....+..+++.++++++|+|+++.++++....|..++.... .+
T Consensus       190 fTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L  269 (335)
T PRK12299        190 FTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL  269 (335)
T ss_pred             CceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc
Confidence            3677788888888 458899999999632       22334445678999999999998878888888888886542 23


Q ss_pred             CCCcEEEEEeCCCcCCcCCH--HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASE--DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+....  .........                 .++.++++||+++.|+++++++|.+.+
T Consensus       270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~-----------------~~~~i~~iSAktg~GI~eL~~~L~~~l  327 (335)
T PRK12299        270 ADKPRILVLNKIDLLDEEEEREKRAALELAA-----------------LGGPVFLISAVTGEGLDELLRALWELL  327 (335)
T ss_pred             ccCCeEEEEECcccCCchhHHHHHHHHHHHh-----------------cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999998653211  112222111                 235789999999999999999998765

>PLN00023 GTP-binding protein; Provisional

Probab=99.76  E-value=9.4e-18  Score=123.34  Aligned_cols=111  Identities=21%  Similarity=0.339  Sum_probs=87.0

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEEC---------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMG---------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS   63 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~   63 (155)
                      +.++.+ ..+.||+|..  .+.+.++               .+.++||||+|++.|+.++..|+++++++|+|||+++..
T Consensus        41 f~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~  120 (334)
T PLN00023         41 IVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR  120 (334)
T ss_pred             HhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH
Confidence            455654 4678999985  3555553               278999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhCCC-----------CCCCcEEEEEeCCCcCCc--------CCHHHHHhhhcccC
Q psy2161          64 RFPESKYELDSLLADDA-----------LTDVPILILGNKIDIFDA--------ASEDEVRHFFGLYG  112 (155)
Q Consensus        64 ~~~~~~~~l~~~~~~~~-----------~~~~piilv~nK~Dl~~~--------~~~~~i~~~~~~~~  112 (155)
                      +|+.+..|+.++.....           ..++|++||+||+||...        +..++..++....+
T Consensus       121 SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g  188 (334)
T PLN00023        121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQG  188 (334)
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcC
Confidence            99999999999875421           125899999999998642        13556666665543

>PRK15494 era GTPase Era; Provisional

Probab=99.73  E-value=1.4e-16  Score=119.29  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=84.1

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChh-h-------HHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQ-A-------RRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDA   80 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~-~-------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~   80 (155)
                      +.+|.+.....+..++.++.||||||... +       ......++++||++++|+|.++  ++.... .|+..+. .  
T Consensus        84 ~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~-~--  158 (339)
T PRK15494         84 VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLR-S--  158 (339)
T ss_pred             CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHH-h--
Confidence            34555555667788889999999999732 1       1122234789999999999765  444443 3444442 2  


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                       .+.|.++|+||+|+.+. ...++.+.+...               .....++++||++|.|+++++++|.+.++
T Consensus       159 -~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        159 -LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---------------HPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             -cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---------------CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence             24577889999998653 233444443321               12357999999999999999999998764

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.73  E-value=8.7e-17  Score=119.83  Aligned_cols=129  Identities=19%  Similarity=0.256  Sum_probs=92.1

Q ss_pred             cCCCCCceeEEEECC-EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCC
Q psy2161          11 MPTLHPTSEELSMGD-IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADD   79 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~   79 (155)
                      .+|..++...+.+++ .++++||+||...       ....+...+..++++++|+|+++.   ++++....|..++....
T Consensus       189 fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~  268 (329)
T TIGR02729       189 FTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS  268 (329)
T ss_pred             CCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence            356777777788877 9999999999742       222333445689999999999876   56777777776665432


Q ss_pred             -CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          80 -ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        80 -~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                       ...++|+++|+||+|+.+.....++.+.+..                ..+..++++||+++.|++++++++.+.+.
T Consensus       269 ~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----------------~~~~~vi~iSAktg~GI~eL~~~I~~~l~  329 (329)
T TIGR02729       269 PELAEKPRIVVLNKIDLLDEEELAELLKELKK----------------ALGKPVFPISALTGEGLDELLYALAELLE  329 (329)
T ss_pred             hhhccCCEEEEEeCccCCChHHHHHHHHHHHH----------------HcCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence             2357899999999998653222233322221                12357899999999999999999998763

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.73  E-value=9.8e-17  Score=105.50  Aligned_cols=130  Identities=22%  Similarity=0.294  Sum_probs=95.0

Q ss_pred             CcccCCCCCceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ....||. .+.......    +..+.+||+||...+...+..+++.+|++++|+|++++.++.....|+..........+
T Consensus        24 ~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  102 (157)
T cd00882          24 EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGEN  102 (157)
T ss_pred             cccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCC
Confidence            3455666 654444443    58999999999999888889999999999999999998888777766433333344568


Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +|+++++||+|+...............              ......+++++|+.++.|++++++|+.+
T Consensus       103 ~~~ivv~nk~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882         103 IPIILVGNKIDLPEERVVSEEELAEQL--------------AKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CcEEEEEeccccccccchHHHHHHHHH--------------HhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            999999999998764333222100000              1123568999999999999999999864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01878 HflX HflX subfamily

Probab=99.73  E-value=1.5e-16  Score=111.22  Aligned_cols=123  Identities=20%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             ccCCCCCceeEEEECC-EEEEEEEcCCCh---------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSMGD-IVFTTHDLGGHV---------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~-~~~~~~Dt~G~~---------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      +.||..+....+.+++ ..+.+|||||..         .+...+ ..+..+|++++|+|++++.++.....|...+. ..
T Consensus        72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~-~~  149 (204)
T cd01878          72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLK-EL  149 (204)
T ss_pred             cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHH-Hc
Confidence            4567777777777766 499999999972         233333 23678999999999998887776655554442 22


Q ss_pred             CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...++|+++|+||+|+.+....   .....                 ....+++++||++|.|+.+++++|.+.|
T Consensus       150 ~~~~~~viiV~NK~Dl~~~~~~---~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         150 GAEDIPMILVLNKIDLLDDEEL---EERLE-----------------AGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             CcCCCCEEEEEEccccCChHHH---HHHhh-----------------cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            3356899999999998653211   11111                 1345799999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.73  E-value=1.2e-16  Score=108.11  Aligned_cols=128  Identities=19%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             CCCCceeEEEEC---CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          13 TLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        13 T~~~~~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      |.......+..+   +..+.+|||||+..+...+..+++.+|++++|+|+++..... ....+..+..    .++|+++|
T Consensus        34 t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~----~~~p~ivv  108 (168)
T cd01887          34 TQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA----ANVPFIVA  108 (168)
T ss_pred             EEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH----cCCCEEEE
Confidence            433444555554   689999999999999999999999999999999998753222 2222222221    36899999


Q ss_pred             EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +||+|+.+.. ...+...+.....       .........+.++++||++|.|+.++++++.+.
T Consensus       109 ~NK~Dl~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T cd01887         109 LNKIDKPNAN-PERVKNELSELGL-------QGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL  164 (168)
T ss_pred             EEceeccccc-HHHHHHHHHHhhc-------cccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence            9999986422 2222222211000       000001234679999999999999999999864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.73  E-value=7.5e-17  Score=109.76  Aligned_cols=128  Identities=23%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             CCCCCceeEEEEC-CEEEEEEEcCCChh----hHH---hHHhhcCCCCEEEEEEECCCC------CchHHHHHHHHHHHh
Q psy2161          12 PTLHPTSEELSMG-DIVFTTHDLGGHVQ----ARR---VWRDYFPAVDAIVFIIDASDR------SRFPESKYELDSLLA   77 (155)
Q Consensus        12 pT~~~~~~~~~~~-~~~~~~~Dt~G~~~----~~~---~~~~~~~~ad~ii~v~D~~~~------~~~~~~~~~l~~~~~   77 (155)
                      +|..+....+.++ +.++.+|||||...    .+.   .+..+++++|++++|+|++++      .++.....|...+..
T Consensus        29 ~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  108 (176)
T cd01881          29 TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKL  108 (176)
T ss_pred             eeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHH
Confidence            5566666677788 89999999999632    111   233457789999999999987      467777777777654


Q ss_pred             CCC------CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          78 DDA------LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        78 ~~~------~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      ...      ..++|+++|+||+|+........... ...              .......++++||+++.|++++++++.
T Consensus       109 ~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~~--------------~~~~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         109 YDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV-REL--------------ALEEGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             hhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH-HHH--------------hcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence            332      24689999999999865322222110 000              112345799999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       174 ~~~  176 (176)
T cd01881         174 ELL  176 (176)
T ss_pred             hhC
Confidence            754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>smart00275 G_alpha G protein alpha subunit

Probab=99.72  E-value=5.9e-17  Score=121.30  Aligned_cols=145  Identities=20%  Similarity=0.316  Sum_probs=111.3

Q ss_pred             CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHh
Q psy2161           8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLA   77 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~   77 (155)
                      ..+.||.|++...+.+++..+.+||.||++..+..|.+|+.++++++||+|+++          .+.+.+....++.+++
T Consensus       166 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~  245 (342)
T smart00275      166 RSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN  245 (342)
T ss_pred             heeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence            456799999999999999999999999999999999999999999999999986          3567888889999998


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------cccc----cCccEEEEEeeeccCCChHH
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------REIL----QMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      .....+.|+++++||.|+.. .+....+...++.+.+... ....       +...    ..+.+..+.+||.+..++..
T Consensus       246 ~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~-~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~  324 (342)
T smart00275      246 SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPND-YEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV  324 (342)
T ss_pred             CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCC-HHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence            88888999999999999764 2222234444444433210 0000       1111    22567888999999999999


Q ss_pred             HHHHHHhh
Q psy2161         146 GFRWLANY  153 (155)
Q Consensus       146 ~~~~l~~~  153 (155)
                      +|..+.+.
T Consensus       325 v~~~v~~~  332 (342)
T smart00275      325 VFDAVKDI  332 (342)
T ss_pred             HHHHHHHH
Confidence            99877654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd00066 G-alpha G protein alpha subunit

Probab=99.72  E-value=2e-17  Score=122.80  Aligned_cols=146  Identities=19%  Similarity=0.305  Sum_probs=111.4

Q ss_pred             CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC----------CchHHHHHHHHHHHh
Q psy2161           8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR----------SRFPESKYELDSLLA   77 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~----------~~~~~~~~~l~~~~~   77 (155)
                      ....||.|++...+.+++..+.+||+||++..+..|.+|+.++++++||+|+++.          +.+.+....++.+++
T Consensus       143 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~  222 (317)
T cd00066         143 RARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN  222 (317)
T ss_pred             eeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence            3467999999999999999999999999999999999999999999999999873          567788888999998


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------cccc---cCccEEEEEeeeccCCChHHH
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------REIL---QMRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      +....+.|+++++||.|+.. ++....+...++.+.+........       +..+   ..+.+.++.++|.+..++..+
T Consensus       223 ~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~v  302 (317)
T cd00066         223 SRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFV  302 (317)
T ss_pred             CccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHH
Confidence            88888999999999999754 222223344444443311111110       1111   235778889999999999999


Q ss_pred             HHHHHhh
Q psy2161         147 FRWLANY  153 (155)
Q Consensus       147 ~~~l~~~  153 (155)
                      |..+.+.
T Consensus       303 f~~v~~~  309 (317)
T cd00066         303 FDAVKDI  309 (317)
T ss_pred             HHHHHHH
Confidence            9887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.72  E-value=1.6e-16  Score=106.34  Aligned_cols=118  Identities=22%  Similarity=0.255  Sum_probs=83.0

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHH------hHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      |.......+.+++..+.+|||||+..+..      ++..++.  ++|++++|+|++++...   ..++..+..    .++
T Consensus        30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~  102 (158)
T cd01879          30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGL  102 (158)
T ss_pred             ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCC
Confidence            44455677888889999999999876543      4566675  99999999999875433   234433322    268


Q ss_pred             cEEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+... ..........                 .+.+++++||++|.|+.++++++.+.+
T Consensus       103 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         103 PVVVALNMIDEAEKRGIKIDLDKLSEL-----------------LGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             CEEEEEehhhhcccccchhhHHHHHHh-----------------hCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999865321 1111111111                 235799999999999999999998753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.72  E-value=1e-15  Score=105.20  Aligned_cols=135  Identities=17%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |.......+...+..+.+|||||...+...+..+++.+|++++|+|++++..... ..++.....    .++|+++|+||
T Consensus        49 ~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK  123 (189)
T cd00881          49 TIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINK  123 (189)
T ss_pred             CeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEEC
Confidence            3334456667778999999999999999999999999999999999987654432 233333322    47899999999


Q ss_pred             CCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          93 IDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        93 ~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +|+.....    ..++.+.+...+.+..+   ...........++++||++|.|++++++++.+.++
T Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         124 IDRVGEEDLEEVLREIKELLGLIGFISTK---EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             CCCcchhcHHHHHHHHHHHHccccccchh---hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            99865222    22333333332110000   00011234678999999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.72  E-value=2.9e-16  Score=117.96  Aligned_cols=122  Identities=22%  Similarity=0.254  Sum_probs=88.0

Q ss_pred             ccCCCCCceeEEEE-CCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSM-GDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~-~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      +.+|..+....+.+ ++..+.+|||+|.         +.|+..+. .+++||++++|+|++++.+++....|...+ ...
T Consensus       220 ~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l  297 (351)
T TIGR03156       220 LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVL-EEL  297 (351)
T ss_pred             CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHH-HHh
Confidence            45788888888888 5689999999997         33444443 478999999999999988776654443333 322


Q ss_pred             CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...++|+++|+||+|+.+.   ..+......                  ...++.+||++|.|++++++++.+.+
T Consensus       298 ~~~~~piIlV~NK~Dl~~~---~~v~~~~~~------------------~~~~i~iSAktg~GI~eL~~~I~~~~  351 (351)
T TIGR03156       298 GAEDIPQLLVYNKIDLLDE---PRIERLEEG------------------YPEAVFVSAKTGEGLDLLLEAIAERL  351 (351)
T ss_pred             ccCCCCEEEEEEeecCCCh---HhHHHHHhC------------------CCCEEEEEccCCCCHHHHHHHHHhhC
Confidence            3347899999999998542   222111111                  12479999999999999999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.71  E-value=5e-16  Score=107.89  Aligned_cols=112  Identities=21%  Similarity=0.271  Sum_probs=77.1

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ...+..+++++++|||||+..|...+..+++++|++++|+|+++. .+.....++.....    .++|+++|+||+|+.+
T Consensus        57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~  131 (194)
T cd01891          57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPD  131 (194)
T ss_pred             eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            345667789999999999999999999999999999999999864 23333344444432    3689999999999864


Q ss_pred             cCC---HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          98 AAS---EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        98 ~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      ...   ..++...+...+          ......+++++++||++|.|+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         132 ARPEEVVDEVFDLFIELG----------ATEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             CCHHHHHHHHHHHHHHhC----------CccccCccCEEEeehhcccccc
Confidence            322   223333321100          0011235689999999997753

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.71  E-value=6.9e-17  Score=106.70  Aligned_cols=98  Identities=16%  Similarity=0.147  Sum_probs=69.4

Q ss_pred             EEEEcCCCh-----hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHH
Q psy2161          29 TTHDLGGHV-----QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASED  102 (155)
Q Consensus        29 ~~~Dt~G~~-----~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~  102 (155)
                      .+|||||+.     .++.+.. .+++||++++|+|++++.++.. ..|....       ..|+++|+||+|+.+ ....+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHH
Confidence            689999972     3444444 5899999999999999888754 2333221       249999999999865 23333


Q ss_pred             HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      +..+.+...                ...+++++||++|.|++++|+++.
T Consensus       109 ~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETA----------------GAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHc----------------CCCcEEEEecCCCCCHHHHHHHHh
Confidence            333333321                112689999999999999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.71  E-value=3.7e-16  Score=124.36  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=82.5

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH---H
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE---D  102 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~  102 (155)
                      +++++|||||+..|...+..+++.||++++|+|+++..+......|.... .    .+.|+++|+||+|+.+....   .
T Consensus        70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~  144 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKK  144 (595)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHH
Confidence            89999999999999999999999999999999999876666555554333 1    36799999999998643211   2


Q ss_pred             HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ++.+.++.                 ....++++||++|.|++++++++.+.++
T Consensus       145 el~~~lg~-----------------~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       145 EIEEVIGL-----------------DASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HHHHHhCC-----------------CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            22222221                 1235899999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG4252|consensus

Probab=99.70  E-value=2e-18  Score=115.29  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=107.1

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..|..|+|+.  .+.+.+.+  +++.+|||+|++.|......||++|.+.++||..++..+|+....|..++.+.  ...
T Consensus        47 kdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~  124 (246)
T KOG4252|consen   47 KDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TER  124 (246)
T ss_pred             cccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hcc
Confidence            4677888875  55665554  89999999999999999999999999999999999999999999999999754  468


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +|.++|-||+|+.+  .+...++......                 ....++.+|++..-|+..+|.+|++.
T Consensus       125 IPtV~vqNKIDlveds~~~~~evE~lak~-----------------l~~RlyRtSvked~NV~~vF~YLaeK  179 (246)
T KOG4252|consen  125 IPTVFVQNKIDLVEDSQMDKGEVEGLAKK-----------------LHKRLYRTSVKEDFNVMHVFAYLAEK  179 (246)
T ss_pred             CCeEEeeccchhhHhhhcchHHHHHHHHH-----------------hhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            99999999999976  4555566555544                 34568899999999999999999864

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.70  E-value=3.6e-16  Score=109.46  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE----  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~----  101 (155)
                      .++.||||||++.+...+...++.+|++++|+|++++.........+..+. ..  ...|+++|+||+|+.+....    
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~--~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IM--GLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-Hc--CCCcEEEEEEchhccCHHHHHHHH
Confidence            789999999999998888888999999999999986421111122222221 11  23589999999998642111    


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +.+.+.+..              .....+.++++||++|.|++++++++.+.++
T Consensus       160 ~~i~~~~~~--------------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         160 EQIKKFVKG--------------TIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHhc--------------cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            222222221              1123467999999999999999999998764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01889 SelB_euk SelB subfamily

Probab=99.70  E-value=5.4e-16  Score=107.57  Aligned_cols=129  Identities=16%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             CCCCCceeEEEEC--------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161          12 PTLHPTSEELSMG--------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus        12 pT~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +|.+.....+.+.              ++.+++|||||+..+........+.+|++++|+|+++.........+.  +..
T Consensus        40 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~  117 (192)
T cd01889          40 ITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGE  117 (192)
T ss_pred             CeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHH
Confidence            5666655555554              689999999999876554445567889999999998754433322222  111


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          78 DDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .   .++|+++++||+|+.....    .+++.+.+...          .......+++++++||++|.|++++++++.++
T Consensus       118 ~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         118 I---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT----------LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             H---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH----------HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence            1   2579999999999864222    22222222110          00011245789999999999999999999987


Q ss_pred             cC
Q psy2161         154 ID  155 (155)
Q Consensus       154 i~  155 (155)
                      ++
T Consensus       185 ~~  186 (192)
T cd01889         185 IV  186 (192)
T ss_pred             cc
Confidence            64

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=6.4e-16  Score=120.48  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=86.3

Q ss_pred             CCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCCh--------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHH
Q psy2161           2 LKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAVDAIVFIIDASDRSRFPESK   69 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~--------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~   69 (155)
                      |.++....+.++.|.+    ...+.+++.++.+|||||..        .+...+..+++.||++++|+|+++..++.. .
T Consensus        58 l~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~  136 (472)
T PRK03003         58 ILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-E  136 (472)
T ss_pred             HhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-H
Confidence            4445444445555553    44556788899999999965        245556778999999999999998755532 2


Q ss_pred             HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161          70 YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW  149 (155)
Q Consensus        70 ~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  149 (155)
                      .+...+ ..   .++|+++|+||+|+.....  +.......               . .. ..+++||++|.|+++++++
T Consensus       137 ~i~~~l-~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~---------------g-~~-~~~~iSA~~g~gi~eL~~~  193 (472)
T PRK03003        137 AVARVL-RR---SGKPVILAANKVDDERGEA--DAAALWSL---------------G-LG-EPHPVSALHGRGVGDLLDA  193 (472)
T ss_pred             HHHHHH-HH---cCCCEEEEEECccCCccch--hhHHHHhc---------------C-CC-CeEEEEcCCCCCcHHHHHH
Confidence            233323 21   3689999999999864211  11111111               0 01 2468999999999999999


Q ss_pred             HHhhc
Q psy2161         150 LANYI  154 (155)
Q Consensus       150 l~~~i  154 (155)
                      +.+.+
T Consensus       194 i~~~l  198 (472)
T PRK03003        194 VLAAL  198 (472)
T ss_pred             HHhhc
Confidence            98765

>KOG0096|consensus

Probab=99.69  E-value=3.1e-17  Score=110.41  Aligned_cols=134  Identities=19%  Similarity=0.295  Sum_probs=108.2

Q ss_pred             CCCCCCC-cccCCCCCceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRTA-QHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~~-~~~pT~~~~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      ...|+++ .+.||+|+....+.+.    .++|..|||+|++.+-.....||-++.+.+++||++..-++..+..|..++.
T Consensus        30 ~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~  109 (216)
T KOG0096|consen   30 HLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLV  109 (216)
T ss_pred             hhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHH
Confidence            3456665 5889999987777653    2999999999999999999999999999999999999888999999999887


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...  .++||++.+||.|.........-..+                 ...+++.++++||+++.|.+.-|.||++.+
T Consensus       110 rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~-----------------~rkknl~y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  110 RVR--ENIPIVLCGNKVDIKARKVKAKPVSF-----------------HRKKNLQYYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             HHh--cCCCeeeeccceecccccccccccee-----------------eecccceeEEeecccccccccchHHHhhhh
Confidence            543  57999999999997653222121222                 233678999999999999999999999864

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=1.2e-15  Score=102.53  Aligned_cols=122  Identities=16%  Similarity=0.233  Sum_probs=100.3

Q ss_pred             CCCCCceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          12 PTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      .|+......+.+++ ..+.+++||||++|+-+|..+.+++.++++++|.+.+..+ +....+..+. +..  .+|+++++
T Consensus        53 tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~-~~~--~ip~vVa~  128 (187)
T COG2229          53 TTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLT-SRN--PIPVVVAI  128 (187)
T ss_pred             eeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHh-hcc--CCCEEEEe
Confidence            45555666666665 9999999999999999999999999999999999999888 4445555543 221  28999999


Q ss_pred             eCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          91 NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        91 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ||.|+.+..+.+++.+.+....               ...+.++.+|.++++..+.++.+..
T Consensus       129 NK~DL~~a~ppe~i~e~l~~~~---------------~~~~vi~~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         129 NKQDLFDALPPEKIREALKLEL---------------LSVPVIEIDATEGEGARDQLDVLLL  175 (187)
T ss_pred             eccccCCCCCHHHHHHHHHhcc---------------CCCceeeeecccchhHHHHHHHHHh
Confidence            9999999999999999887620               3568999999999999998887754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.69  E-value=1.3e-15  Score=121.27  Aligned_cols=109  Identities=20%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH---
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE---  101 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~---  101 (155)
                      ++++++|||||+..|...+..+++.+|++++|+|+++.........|.... .    .+.|+++|+||+|+.+....   
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~  147 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVK  147 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHH
Confidence            489999999999999999999999999999999998865554444443322 1    36899999999998643221   


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      .++.+.++.                 ....++.+||++|.|++++++++.+.++
T Consensus       148 ~ei~~~lg~-----------------~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        148 QEIEDVIGI-----------------DASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             HHHHHHhCC-----------------CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            222222221                 1235899999999999999999988764

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.69  E-value=1.8e-15  Score=100.46  Aligned_cols=127  Identities=20%  Similarity=0.289  Sum_probs=94.4

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC-CchHHHH-HHHHHHHhCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR-SRFPESK-YELDSLLADDAL   81 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~-~~~~~~~-~~l~~~~~~~~~   81 (155)
                      ..+.||.+..  ...+.+++  +.+.+||+||+..+...+..+++.++++++++|.... .++.... .|...+......
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~  107 (161)
T TIGR00231        28 TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES  107 (161)
T ss_pred             CcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc
Confidence            4556677665  34467777  8899999999999999999999999999999999876 6665554 566555443322


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                       +.|+++++||+|+............+...                ....++++||++|.|+.+++++|.
T Consensus       108 -~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       108 -NVPIILVGNKIDLRDAKLKTHVAFLFAKL----------------NGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             -CCcEEEEEEcccCCcchhhHHHHHHHhhc----------------cCCceEEeecCCCCCHHHHHHHhh
Confidence             78999999999986533233333333331                234699999999999999999974

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG3883|consensus

Probab=99.68  E-value=1.5e-15  Score=99.10  Aligned_cols=130  Identities=19%  Similarity=0.301  Sum_probs=104.7

Q ss_pred             CcccCCCCCc-eeEEEECC---EEEEEEEcCCChhh-HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD---IVFTTHDLGGHVQA-RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~---~~~~~~Dt~G~~~~-~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      .++.||++.. +..++.+.   .++.++||+|-+.+ ..+-++|++-+|++++||+..++++|+.+..+-.+|-++....
T Consensus        38 ~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK  117 (198)
T KOG3883|consen   38 TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK  117 (198)
T ss_pred             CccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccc
Confidence            4678999875 78888764   78999999998877 7788999999999999999999999988765555665566667


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+|+++++||+|+.+  .+..+....+...                 ..+..++++|.+...+-|.|.+++..+
T Consensus       118 EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r-----------------Ekvkl~eVta~dR~sL~epf~~l~~rl  174 (198)
T KOG3883|consen  118 EVPIVVLANKRDRAEPREVDMDVAQIWAKR-----------------EKVKLWEVTAMDRPSLYEPFTYLASRL  174 (198)
T ss_pred             cccEEEEechhhcccchhcCHHHHHHHHhh-----------------hheeEEEEEeccchhhhhHHHHHHHhc
Confidence            899999999999965  3444444444443                 567899999999999999999988653

>KOG0090|consensus

Probab=99.68  E-value=4.4e-15  Score=102.01  Aligned_cols=153  Identities=20%  Similarity=0.284  Sum_probs=116.9

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcC---CCCEEEEEEECCC-CCchHHHHHHHHHHH
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP---AVDAIVFIIDASD-RSRFPESKYELDSLL   76 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~---~ad~ii~v~D~~~-~~~~~~~~~~l~~~~   76 (155)
                      +|..|....++|.+.++...+.++.-..++.|.||+.+.+.....+++   .+.+++||+|+.- +.....+..++-.++
T Consensus        57 qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil  136 (238)
T KOG0090|consen   57 QLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDIL  136 (238)
T ss_pred             ehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHH
Confidence            466778888999999999999999888999999999999998888888   7999999999853 445566666776666


Q ss_pred             hCC--CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCc------------cC----------CCcc-cccccccCccEE
Q psy2161          77 ADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL------------TT----------GKEF-TSREILQMRPIE  131 (155)
Q Consensus        77 ~~~--~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~----------~~~~-~~~~~~~~~~~~  131 (155)
                      ...  ..+.+|+++.+||.|+..+.+.+.|.+.++.+-.            +.          .++. +.+..+....+.
T Consensus       137 ~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~  216 (238)
T KOG0090|consen  137 LDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVT  216 (238)
T ss_pred             HhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeE
Confidence            544  3456899999999999877777777666653211            00          0111 233344556788


Q ss_pred             EEEeeeccCCChHHHHHHHHhhc
Q psy2161         132 LFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       132 ~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.++|+++| +++++.+|+.+.+
T Consensus       217 F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  217 FAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             EeecccCcC-ChHHHHHHHHHhC
Confidence            999999999 9999999998754

>cd01894 EngA1 EngA1 subfamily

Probab=99.67  E-value=1.9e-15  Score=100.83  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=79.5

Q ss_pred             CceeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      .....+.+++..+.+|||||...+..        .+..+++++|++++|+|++++.+...  .++...+..   .+.|++
T Consensus        35 ~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~---~~~pii  109 (157)
T cd01894          35 RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPAD--EEIAKYLRK---SKKPVI  109 (157)
T ss_pred             ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccH--HHHHHHHHh---cCCCEE
Confidence            34566777889999999999876433        44567889999999999976544432  223333322   258999


Q ss_pred             EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+||+|+.+....   ...+..                 .+. .++++||++|.|++++++++.+.+
T Consensus       110 iv~nK~D~~~~~~~---~~~~~~-----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         110 LVVNKVDNIKEEDE---AAEFYS-----------------LGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             EEEECcccCChHHH---HHHHHh-----------------cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            99999998653211   111111                 112 578999999999999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.67  E-value=5e-15  Score=102.45  Aligned_cols=126  Identities=18%  Similarity=0.252  Sum_probs=88.6

Q ss_pred             CCCCceeEEE--ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          13 TLHPTSEELS--MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        13 T~~~~~~~~~--~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      |+......+.  .++..++++||||+..|.......++.+|++|+|+|+.+.-.. .....+..+..    .++|+++++
T Consensus        55 ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvl  129 (188)
T PF00009_consen   55 TIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVL  129 (188)
T ss_dssp             SSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEE
T ss_pred             ccccccccccccccccceeecccccccceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEee
Confidence            4445566777  7789999999999999999888889999999999999865332 22333333322    268899999


Q ss_pred             eCCCcCCcC---CHHHHHhhh-cccCccCCCcccccccccC-ccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          91 NKIDIFDAA---SEDEVRHFF-GLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        91 nK~Dl~~~~---~~~~i~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ||+|+....   ..+++...+ ...+            ... ..++++++||++|.|++++++.+.+.+|
T Consensus       130 NK~D~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  130 NKMDLIEKELEEIIEEIKEKLLKEYG------------ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             ETCTSSHHHHHHHHHHHHHHHHHHTT------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             eeccchhhhHHHHHHHHHHHhccccc------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            999987311   112222111 1100            111 3589999999999999999999999876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=1.6e-15  Score=117.64  Aligned_cols=127  Identities=24%  Similarity=0.290  Sum_probs=87.0

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChh----hHHh---HHhhcCCCCEEEEEEECCCC----CchHHHHHHHHHHHhCC
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQ----ARRV---WRDYFPAVDAIVFIIDASDR----SRFPESKYELDSLLADD   79 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~----~~~~---~~~~~~~ad~ii~v~D~~~~----~~~~~~~~~l~~~~~~~   79 (155)
                      .+|+.++...+.+++.+|++||+||...    ...+   ....+..|+++++|+|+++.    +.++....+..++....
T Consensus       191 fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~  270 (500)
T PRK12296        191 FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA  270 (500)
T ss_pred             cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence            4788888888999999999999999521    1111   22346789999999999753    34444444444443222


Q ss_pred             ----------CCCCCcEEEEEeCCCcCCcCCHH-HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161          80 ----------ALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        80 ----------~~~~~piilv~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  148 (155)
                                .+.++|+++|+||+|+.+..... .+...+..                 ..+.++++||+++.|+++++.
T Consensus       271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~-----------------~g~~Vf~ISA~tgeGLdEL~~  333 (500)
T PRK12296        271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA-----------------RGWPVFEVSAASREGLRELSF  333 (500)
T ss_pred             hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHH
Confidence                      23578999999999986432211 12222221                 346899999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      +|.+.+
T Consensus       334 ~L~ell  339 (500)
T PRK12296        334 ALAELV  339 (500)
T ss_pred             HHHHHH
Confidence            998764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.66  E-value=2.8e-15  Score=116.90  Aligned_cols=120  Identities=14%  Similarity=0.104  Sum_probs=81.4

Q ss_pred             eeEEEECCEEEEEEEcCCC----------hhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          18 SEELSMGDIVFTTHDLGGH----------VQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~----------~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ...+.+++..+.+|||||.          +.+... ...++++||++++|+|+++..++.... ++..+..    .++|+
T Consensus       251 ~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~pi  325 (472)
T PRK03003        251 DSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRAL  325 (472)
T ss_pred             eEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCE
Confidence            5667788999999999995          223332 234678999999999999887776653 4444432    36899


Q ss_pred             EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+||+|+.+..............            .......+++++||++|.|++++|+.+.+.+
T Consensus       326 IiV~NK~Dl~~~~~~~~~~~~i~~~------------l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~  381 (472)
T PRK03003        326 VLAFNKWDLVDEDRRYYLEREIDRE------------LAQVPWAPRVNISAKTGRAVDKLVPALETAL  381 (472)
T ss_pred             EEEEECcccCChhHHHHHHHHHHHh------------cccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999996422112221111110            0011234689999999999999999987643

>PRK04213 GTP-binding protein; Provisional

Probab=99.65  E-value=2.5e-15  Score=104.81  Aligned_cols=128  Identities=19%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCC-----------ChhhHHhHHhhcC----CCCEEEEEEECCCCCch-HH------
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFP----AVDAIVFIIDASDRSRF-PE------   67 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G-----------~~~~~~~~~~~~~----~ad~ii~v~D~~~~~~~-~~------   67 (155)
                      +.|+.......+.++  .+++|||||           ++.++..+..+++    .++++++|+|.++...+ +.      
T Consensus        38 ~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~  115 (201)
T PRK04213         38 KRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGE  115 (201)
T ss_pred             CCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCC
Confidence            445444444444444  689999999           5677777777764    45788899988653221 00      


Q ss_pred             --HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCCh
Q psy2161          68 --SKYELDSLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGF  143 (155)
Q Consensus        68 --~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  143 (155)
                        ....+...+..   .++|+++|+||+|+.+..  ...++.+.++...           ........++++||++| |+
T Consensus       116 ~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~SA~~g-gi  180 (201)
T PRK04213        116 IPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP-----------PWRQWQDIIAPISAKKG-GI  180 (201)
T ss_pred             cHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc-----------cccccCCcEEEEecccC-CH
Confidence              00111222221   368999999999986532  1222333222200           00000125899999999 99


Q ss_pred             HHHHHHHHhhc
Q psy2161         144 GNGFRWLANYI  154 (155)
Q Consensus       144 ~~~~~~l~~~i  154 (155)
                      ++++++|.+.+
T Consensus       181 ~~l~~~l~~~~  191 (201)
T PRK04213        181 EELKEAIRKRL  191 (201)
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.65  E-value=3.7e-15  Score=105.12  Aligned_cols=150  Identities=22%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             CCCCCC-CcccCCCCCce--eEEEEC--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPTS--EELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSL   75 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~   75 (155)
                      |..+.+ ..+.||++...  ......  .+++.+|||+|+++++..|..|+.+++++++|+|.++..++ +....|+..+
T Consensus        25 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l  104 (219)
T COG1100          25 LVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEEL  104 (219)
T ss_pred             HhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHH
Confidence            344554 45778887652  222223  48899999999999999999999999999999999985444 5556787777


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhc-ccCccCCCcccccccccCccEEEEEeeec--cCCChHHHHHHHH
Q psy2161          76 LADDALTDVPILILGNKIDIFDAASE-DEVRHFFG-LYGLTTGKEFTSREILQMRPIELFMCSVL--KRQGFGNGFRWLA  151 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l~  151 (155)
                      .... ....|+++++||+|+...... ..+...+. ....  ................+++||++  ++.++.++|..+.
T Consensus       105 ~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~  181 (219)
T COG1100         105 RELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVL--LVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL  181 (219)
T ss_pred             HHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcch--hhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHH
Confidence            5433 246899999999999763221 11111110 0000  00000000011123348999999  9999999998877


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       182 ~~~  184 (219)
T COG1100         182 RKL  184 (219)
T ss_pred             HHH
Confidence            643

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.64  E-value=5.6e-15  Score=113.08  Aligned_cols=125  Identities=22%  Similarity=0.287  Sum_probs=87.2

Q ss_pred             cCCCCCceeEEEEC-CEEEEEEEcCCChh----hHHhHH---hhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCC
Q psy2161          11 MPTLHPTSEELSMG-DIVFTTHDLGGHVQ----ARRVWR---DYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADD   79 (155)
Q Consensus        11 ~pT~~~~~~~~~~~-~~~~~~~Dt~G~~~----~~~~~~---~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~   79 (155)
                      -+|..++...+.++ +.++.+||+||...    ...+..   ..+..++++++|+|+++.   +.++....|..++....
T Consensus       190 fTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~  269 (424)
T PRK12297        190 FTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN  269 (424)
T ss_pred             cceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc
Confidence            35666777777777 68999999999632    222333   335579999999999864   56666666666665432


Q ss_pred             -CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 -ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 -~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                       .+.++|+++|+||+|+.+.  ...+......              +   ...++++||+++.|++++++++.+.+
T Consensus       270 ~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~--------------l---~~~i~~iSA~tgeGI~eL~~~L~~~l  326 (424)
T PRK12297        270 PRLLERPQIVVANKMDLPEA--EENLEEFKEK--------------L---GPKVFPISALTGQGLDELLYAVAELL  326 (424)
T ss_pred             hhccCCcEEEEEeCCCCcCC--HHHHHHHHHH--------------h---CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence             2357899999999998432  2222222222              1   14789999999999999999998754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.64  E-value=2.9e-15  Score=116.02  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      |..+....+.+++..+.+|||||.+.+..        ....+++++|++++|+|++++.+++....|..       ..++
T Consensus       250 T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~  322 (449)
T PRK05291        250 TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDK  322 (449)
T ss_pred             ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCC
Confidence            44445677888999999999999865332        13346889999999999998877765433322       3468


Q ss_pred             cEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+.....      ..                 ....++++||++|.|++++++++.+.+
T Consensus       323 piiiV~NK~DL~~~~~~~------~~-----------------~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        323 PVIVVLNKADLTGEIDLE------EE-----------------NGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             CcEEEEEhhhccccchhh------hc-----------------cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence            999999999986422111      11                 124689999999999999999998754

>KOG0082|consensus

Probab=99.64  E-value=2e-15  Score=111.87  Aligned_cols=145  Identities=21%  Similarity=0.317  Sum_probs=114.0

Q ss_pred             CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHh
Q psy2161           8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLA   77 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~   77 (155)
                      ...+||.|+....+.+++..+.++|+|||++-+..|.++|.+++++|||+++++          .+.+.+...+++.+.+
T Consensus       177 ~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n  256 (354)
T KOG0082|consen  177 RSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN  256 (354)
T ss_pred             hhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence            346899999999999999999999999999999999999999999999999875          3445667789999999


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------cccc---cCccEEEEEeeeccCCChHHH
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------REIL---QMRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      +....+.+++|++||.|+.. .+....+...++.+.+... ....       +.++   ..+.+.++.++|.+..+++.+
T Consensus       257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~-~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~v  335 (354)
T KOG0082|consen  257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNT-YEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFV  335 (354)
T ss_pred             CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCC-hHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHH
Confidence            99999999999999999876 4444445555555544311 1111       1111   125678889999999999999


Q ss_pred             HHHHHhh
Q psy2161         147 FRWLANY  153 (155)
Q Consensus       147 ~~~l~~~  153 (155)
                      |+.+.+.
T Consensus       336 f~av~d~  342 (354)
T KOG0082|consen  336 FDAVTDT  342 (354)
T ss_pred             HHHHHHH
Confidence            9988764

>TIGR00436 era GTP-binding protein Era

Probab=99.63  E-value=1.1e-14  Score=106.08  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=75.8

Q ss_pred             EEECCEEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          21 LSMGDIVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        21 ~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      ...++.++.+|||||....        ......+++++|++++|+|+++..+..  ..++..+ ..   .+.|+++|+||
T Consensus        43 ~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK  116 (270)
T TIGR00436        43 HTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNK  116 (270)
T ss_pred             EEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEEC
Confidence            3445688999999996431        223456788999999999998866554  2333333 22   36899999999


Q ss_pred             CCcCCcCCH-HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          93 IDIFDAASE-DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        93 ~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +|+.+.... ..+......               . ....++++||++|.|++++++++.+.++
T Consensus       117 ~Dl~~~~~~~~~~~~~~~~---------------~-~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       117 LDNKFKDKLLPLIDKYAIL---------------E-DFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             eeCCCHHHHHHHHHHHHhh---------------c-CCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            998532111 111111111               0 1126899999999999999999988764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.62  E-value=1.8e-14  Score=111.27  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=78.9

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...+.+++..+++|||||...+..        ....+++++|++++|+|++++.+++..  |+..+.    ..++|+++|
T Consensus       243 ~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV  316 (442)
T TIGR00450       243 EGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILV  316 (442)
T ss_pred             EEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEE
Confidence            567788999999999999865432        234678999999999999988777654  665553    136899999


Q ss_pred             EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +||+|+... ...   .....                 .+..++.+||++ .|+.++++.+.+.+
T Consensus       317 ~NK~Dl~~~-~~~---~~~~~-----------------~~~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       317 LNKIDLKIN-SLE---FFVSS-----------------KVLNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             EECccCCCc-chh---hhhhh-----------------cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence            999998643 111   11111                 123578999998 68889888877643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.61  E-value=1.7e-14  Score=114.55  Aligned_cols=121  Identities=21%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             eeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          18 SEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        18 ~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ...+.+++ .+++||||||+..|..++..+++.+|++++|+|+++...-+. ...+...    ...++|+++++||+|+.
T Consensus       126 ~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~----~~~~vPiIVviNKiDl~  200 (587)
T TIGR00487       126 AYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHA----KAANVPIIVAINKIDKP  200 (587)
T ss_pred             EEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHH----HHcCCCEEEEEECcccc
Confidence            45566655 499999999999999999999999999999999876422211 1222222    12368999999999986


Q ss_pred             CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          97 DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        97 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +. ..+.+...+...++..        ........++++||++|.|++++++++..
T Consensus       201 ~~-~~e~v~~~L~~~g~~~--------~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       201 EA-NPDRVKQELSEYGLVP--------EDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             cC-CHHHHHHHHHHhhhhH--------HhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            52 3444444443211000        00012357999999999999999999853

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.61  E-value=2.3e-14  Score=95.56  Aligned_cols=108  Identities=20%  Similarity=0.219  Sum_probs=78.9

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...+..++.++.+|||||...+..        ....++..+|++++|+|++++.+......+..       ..++|+++|
T Consensus        41 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v  113 (157)
T cd04164          41 EESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVV  113 (157)
T ss_pred             EEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEE
Confidence            456667789999999999644321        23346779999999999998776655433322       347899999


Q ss_pred             EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +||+|+.+....        .              ......+++++||+++.|+++++++|.+.+
T Consensus       114 ~nK~D~~~~~~~--------~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         114 LNKSDLLPDSEL--------L--------------SLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEchhcCCcccc--------c--------------cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            999998653221        1              111245799999999999999999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK11058 GTPase HflX; Provisional

Probab=99.61  E-value=1.9e-14  Score=110.55  Aligned_cols=123  Identities=18%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             cCCCCCceeEEEECC-EEEEEEEcCCChh--hHHhH------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161          11 MPTLHPTSEELSMGD-IVFTTHDLGGHVQ--ARRVW------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~--~~~~~------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      -+|..+....+.+.+ ..+.+|||+|..+  ....+      ...++.||++++|+|++++.+++....|.. ++.....
T Consensus       229 ~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~  307 (426)
T PRK11058        229 FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNT-VLEEIDA  307 (426)
T ss_pred             CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHH-HHHHhcc
Confidence            467777777888776 4899999999733  12222      334689999999999999877766533322 2222223


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEE-EEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE-LFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+... ..+.. ...                  +.+ ++.+||++|.|++++++++.+.+
T Consensus       308 ~~~pvIiV~NKiDL~~~~~-~~~~~-~~~------------------~~~~~v~ISAktG~GIdeL~e~I~~~l  361 (426)
T PRK11058        308 HEIPTLLVMNKIDMLDDFE-PRIDR-DEE------------------NKPIRVWLSAQTGAGIPLLFQALTERL  361 (426)
T ss_pred             CCCCEEEEEEcccCCCchh-HHHHH-Hhc------------------CCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            4689999999999864211 11111 000                  112 57899999999999999998754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.61  E-value=1e-14  Score=112.50  Aligned_cols=119  Identities=13%  Similarity=0.154  Sum_probs=80.7

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHH-----------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARR-----------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ...+.+++..+.+|||||..+...           ....+++.||++++|+|++++.+.... .++..+..    .++|+
T Consensus       212 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~i  286 (429)
T TIGR03594       212 DIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKAL  286 (429)
T ss_pred             eEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcE
Confidence            456677888999999999644321           123468899999999999987665543 33333332    36899


Q ss_pred             EEEEeCCCcC-CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          87 LILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        87 ilv~nK~Dl~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ++|+||+|+. +.....++...+...            -......+++++||++|.|++++++++.+.
T Consensus       287 iiv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~  342 (429)
T TIGR03594       287 VIVVNKWDLVKDEKTREEFKKELRRK------------LPFLDFAPIVFISALTGQGVDKLLDAIDEV  342 (429)
T ss_pred             EEEEECcccCCCHHHHHHHHHHHHHh------------cccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999986 222223333333210            001134689999999999999999998753

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.60  E-value=8.8e-15  Score=116.37  Aligned_cols=121  Identities=18%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             CceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCC
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKID   94 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~D   94 (155)
                      .....+.+++..+.+||+||++.|...+..++.++|++++|+|+++... ......+..+ ..   .++| +++|+||+|
T Consensus        40 ~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-~qT~ehl~il-~~---lgi~~iIVVlNK~D  114 (581)
T TIGR00475        40 LGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-TQTGEHLAVL-DL---LGIPHTIVVITKAD  114 (581)
T ss_pred             eEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEECCC
Confidence            3456677888999999999999999999999999999999999987321 1122222222 21   2566 999999999


Q ss_pred             cCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          95 IFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        95 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+...    .+++.+.+...+             ...+.+++++||++|.|++++++++...+
T Consensus       115 lv~~~~~~~~~~ei~~~l~~~~-------------~~~~~~ii~vSA~tG~GI~eL~~~L~~l~  165 (581)
T TIGR00475       115 RVNEEEIKRTEMFMKQILNSYI-------------FLKNAKIFKTSAKTGQGIGELKKELKNLL  165 (581)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-------------CCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence            865221    122333222210             01246899999999999999999887643

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.59  E-value=6e-14  Score=108.29  Aligned_cols=114  Identities=21%  Similarity=0.276  Sum_probs=80.4

Q ss_pred             ceeEEEECCEEEEEEEcCCC--------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          17 TSEELSMGDIVFTTHDLGGH--------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~--------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      ....+.+++.++.+|||||.        +.+......+++.||++++|+|+++..+...  ..+...++.   .++|+++
T Consensus        38 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piil  112 (429)
T TIGR03594        38 KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVIL  112 (429)
T ss_pred             eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEE
Confidence            35677788999999999995        4456667788999999999999986433322  222233222   2689999


Q ss_pred             EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+||+|+.+....  ..+....                 ..-.++++||++|.|+.++++++.+.+
T Consensus       113 VvNK~D~~~~~~~--~~~~~~l-----------------g~~~~~~vSa~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594       113 VANKIDGKKEDAV--AAEFYSL-----------------GFGEPIPISAEHGRGIGDLLDAILELL  159 (429)
T ss_pred             EEECccCCccccc--HHHHHhc-----------------CCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence            9999998652211  1111111                 112589999999999999999998765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.59  E-value=1.3e-14  Score=97.77  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             EEEcCCChh----hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHH
Q psy2161          30 THDLGGHVQ----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR  105 (155)
Q Consensus        30 ~~Dt~G~~~----~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~  105 (155)
                      +|||||...    +.......+++||++++|+|+++..++..  .|+..+.     .++|+++++||+|+.+ .....+.
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~-----~~~~ii~v~nK~Dl~~-~~~~~~~  112 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDIG-----VSKRQIAVISKTDMPD-ADVAATR  112 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhcc-----CCCCeEEEEEccccCc-ccHHHHH
Confidence            699999722    22222334789999999999998766522  3444431     3579999999999864 3344444


Q ss_pred             hhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         106 HFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+...+               ...+++++||++|.|++++++++.+.+
T Consensus       113 ~~~~~~~---------------~~~p~~~~Sa~~g~gi~~l~~~l~~~~  146 (158)
T PRK15467        113 KLLLETG---------------FEEPIFELNSHDPQSVQQLVDYLASLT  146 (158)
T ss_pred             HHHHHcC---------------CCCCEEEEECCCccCHHHHHHHHHHhc
Confidence            4443311               124799999999999999999998765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.59  E-value=2.4e-14  Score=116.45  Aligned_cols=121  Identities=19%  Similarity=0.147  Sum_probs=83.8

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ...+.+++.+++||||||+..|..++..+++.+|++|+|+|+++...-.. ...+...    ...++|+++++||+|+.+
T Consensus       329 a~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        329 AYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             EEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECccccc
Confidence            45677788999999999999999999999999999999999987322111 1112222    124689999999999864


Q ss_pred             cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          98 AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        98 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      . ....+...+...+..        .......++++++||++|.|+++++++|..
T Consensus       404 a-~~e~V~~eL~~~~~~--------~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        404 A-NPDRVKQELSEYGLV--------PEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             c-CHHHHHHHHHHhccc--------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            2 333333333221100        000112468999999999999999999864

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.58  E-value=4.4e-14  Score=114.12  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV  104 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i  104 (155)
                      +..+.||||||+..|..++..+++.+|++++|+|+++...... ...+..+    ...++|+++++||+|+.+. ...++
T Consensus       294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v  367 (742)
T CHL00189        294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANA-NTERI  367 (742)
T ss_pred             ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCcccc-CHHHH
Confidence            4899999999999999999999999999999999976422211 1122222    1246899999999998652 33444


Q ss_pred             HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ...+...++.        .......++++++||++|.|++++++++...
T Consensus       368 ~~eL~~~~ll--------~e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        368 KQQLAKYNLI--------PEKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             HHHHHHhccc--------hHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence            4433221100        0000124689999999999999999998753

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.58  E-value=2.6e-14  Score=101.21  Aligned_cols=118  Identities=18%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCc---h---HHHHHHHHHHHhCCCCCCCc
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR---F---PESKYELDSLLADDALTDVP   85 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~---~---~~~~~~l~~~~~~~~~~~~p   85 (155)
                      .|+......+.+++.++++|||||+..+...+...++.+|++++|+|+++...   +   ......+... .  ....+|
T Consensus        63 ~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~  139 (219)
T cd01883          63 VTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-R--TLGVKQ  139 (219)
T ss_pred             cCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-H--HcCCCe
Confidence            34555567788899999999999999888888888889999999999987421   1   1111222111 1  122468


Q ss_pred             EEEEEeCCCcCCc-CC---HHHHHhh----hcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          86 ILILGNKIDIFDA-AS---EDEVRHF----FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        86 iilv~nK~Dl~~~-~~---~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      +++++||+|+... .+   ...+.+.    +...+            ....+++++++||++|.|++
T Consensus       140 iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         140 LIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG------------YNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEEEEEccccccccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecCcCCCCC
Confidence            9999999998631 12   1222222    22210            12235889999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.58  E-value=3.3e-14  Score=115.71  Aligned_cols=128  Identities=20%  Similarity=0.208  Sum_probs=83.7

Q ss_pred             CCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHH
Q psy2161           2 LKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESK   69 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~   69 (155)
                      |.+++.....++.|++    ....++++..+.+|||||...        +......+++.||++++|+|+++.  +....
T Consensus       295 l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d  372 (712)
T PRK09518        295 ILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--LTSTD  372 (712)
T ss_pred             HhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--CCHHH
Confidence            3444444445566654    334456789999999999652        445566788999999999999763  22222


Q ss_pred             -HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161          70 -YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        70 -~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  148 (155)
                       .|...+ ..   .++|+++|+||+|+....  .........               . . -..+++||++|.|+.++++
T Consensus       373 ~~i~~~L-r~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l---------------g-~-~~~~~iSA~~g~GI~eLl~  429 (712)
T PRK09518        373 ERIVRML-RR---AGKPVVLAVNKIDDQASE--YDAAEFWKL---------------G-L-GEPYPISAMHGRGVGDLLD  429 (712)
T ss_pred             HHHHHHH-Hh---cCCCEEEEEECcccccch--hhHHHHHHc---------------C-C-CCeEEEECCCCCCchHHHH
Confidence             233333 22   478999999999985421  112222111               0 0 1247899999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       430 ~i~~~l  435 (712)
T PRK09518        430 EALDSL  435 (712)
T ss_pred             HHHHhc
Confidence            998765

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.58  E-value=1.3e-14  Score=111.94  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=78.1

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      |+......+..+++++++|||||++.|......+++.+|++++|+|+++.+++..  ...++ .+.+..  ...|+++++
T Consensus        72 Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVvi  148 (426)
T TIGR00483        72 TIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAI  148 (426)
T ss_pred             eEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEE
Confidence            3334456677788999999999999988777778899999999999988643311  11111 122211  235899999


Q ss_pred             eCCCcCCcCC------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          91 NKIDIFDAAS------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        91 nK~Dl~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      ||+|+.+...      ..++...+...+            +....++++++||++|.|+.+
T Consensus       149 NK~Dl~~~~~~~~~~~~~ei~~~~~~~g------------~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       149 NKMDSVNYDEEEFEAIKKEVSNLIKKVG------------YNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             EChhccCccHHHHHHHHHHHHHHHHHcC------------CCcccceEEEeeccccccccc
Confidence            9999864111      123333332211            122357899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.58  E-value=5.7e-14  Score=108.62  Aligned_cols=112  Identities=21%  Similarity=0.296  Sum_probs=78.3

Q ss_pred             CceeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      .....+.+++.++.+|||||...        +......+++.+|++++|+|++++.+...  .++...+..   .++|++
T Consensus        39 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~pii  113 (435)
T PRK00093         39 RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVI  113 (435)
T ss_pred             ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEE
Confidence            34667788899999999999876        34445677889999999999987533321  222233322   268999


Q ss_pred             EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHh
Q psy2161          88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +|+||+|+.+.  .....+....                  ++ .++++||++|.|+.++++++.+
T Consensus       114 lv~NK~D~~~~--~~~~~~~~~l------------------g~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        114 LVVNKVDGPDE--EADAYEFYSL------------------GLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             EEEECccCccc--hhhHHHHHhc------------------CCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            99999997541  1222222221                  11 3789999999999999999876

>KOG1673|consensus

Probab=99.57  E-value=2e-14  Score=94.18  Aligned_cols=131  Identities=21%  Similarity=0.281  Sum_probs=100.5

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      +.+..|.|++  .+++...+  +.+.+||.+|++++..+.+-..+++-+|+|+||++.+.++..++.|.......+ ...
T Consensus        47 e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktA  125 (205)
T KOG1673|consen   47 EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTA  125 (205)
T ss_pred             HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Ccc
Confidence            5667788887  57777776  889999999999999999999999999999999999999999999998885332 234


Q ss_pred             CcEEEEEeCCCcCCcCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          84 VPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +|+ +|++|.|+.-..+++   ++.....             ...+..+-..+.||+....|+..+|..+...
T Consensus       126 iPi-lvGTKyD~fi~lp~e~Q~~I~~qar-------------~YAk~mnAsL~F~Sts~sINv~KIFK~vlAk  184 (205)
T KOG1673|consen  126 IPI-LVGTKYDLFIDLPPELQETISRQAR-------------KYAKVMNASLFFCSTSHSINVQKIFKIVLAK  184 (205)
T ss_pred             ceE-EeccchHhhhcCCHHHHHHHHHHHH-------------HHHHHhCCcEEEeeccccccHHHHHHHHHHH
Confidence            565 569999975433332   1211111             1234456688999999999999999886543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.57  E-value=7.5e-14  Score=111.15  Aligned_cols=127  Identities=18%  Similarity=0.227  Sum_probs=91.7

Q ss_pred             CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161          14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI   93 (155)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~   93 (155)
                      +......+.++++++++|||||+..|...+..+++.+|++++|+|+++. .......++.....    .++|+++|+||+
T Consensus        52 I~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKi  126 (594)
T TIGR01394        52 ILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKI  126 (594)
T ss_pred             EEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECC
Confidence            3334567888999999999999999999999999999999999999763 34444566666543    358999999999


Q ss_pred             CcCCcCC---HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhhcC
Q psy2161          94 DIFDAAS---EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANYID  155 (155)
Q Consensus        94 Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~  155 (155)
                      |+.+...   ..++...+...+.          .-....++++.+||++|.          |+..+|+.+.+.+|
T Consensus       127 D~~~a~~~~v~~ei~~l~~~~g~----------~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       127 DRPSARPDEVVDEVFDLFAELGA----------DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             CCCCcCHHHHHHHHHHHHHhhcc----------ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            9865322   2333333322100          001134679999999996          79999999988764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.55  E-value=5.2e-14  Score=107.95  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----  100 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----  100 (155)
                      +..+++|||||++.|...+......+|++++|+|+++..........+..+ ..  ...+|+++++||+|+.+...    
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHH
Confidence            478999999999999999988889999999999998643112222223222 11  12357999999999864211    


Q ss_pred             HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++...+..              .....++++++||++|.|+++++++|...+
T Consensus       156 ~~~i~~~l~~--------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       156 YEEIKEFVKG--------------TVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHhhhhh--------------cccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            1222222221              112356899999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.55  E-value=5.1e-13  Score=90.29  Aligned_cols=118  Identities=16%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             eeEEEECCEEEEEEEcCCChhh----------H-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQA----------R-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~----------~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ...+..++..+.+|||||....          . .....+++++|++++|+|++++.+.... .++.....    .+.|+
T Consensus        42 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~  116 (174)
T cd01895          42 DVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKAL  116 (174)
T ss_pred             eeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCE
Confidence            4566778888999999996322          1 1123456799999999999887665443 23333321    35899


Q ss_pred             EEEEeCCCcCCc--CCHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          87 LILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        87 ilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ++++||+|+.+.  .....+.+.+...             +. .....++++||+++.|++++++++.+.
T Consensus       117 iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         117 VIVVNKWDLVEKDSKTMKEFKKEIRRK-------------LPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHHhh-------------cccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            999999998653  2333333333220             11 123579999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.54  E-value=1.5e-13  Score=104.56  Aligned_cols=131  Identities=17%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             cCCCCCceeEEEECC-EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECC---CCCchHHHHHHHHHHHhCC
Q psy2161          11 MPTLHPTSEELSMGD-IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDAS---DRSRFPESKYELDSLLADD   79 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~---~~~~~~~~~~~l~~~~~~~   79 (155)
                      .+|..++...+.+++ .++.|+||||...       ........++.++++++|+|++   ..+.++....|+.++....
T Consensus       191 ~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~  270 (390)
T PRK12298        191 FTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS  270 (390)
T ss_pred             CCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence            467777777788775 6799999999642       1112223578999999999998   4456666667777765432


Q ss_pred             -CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          80 -ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        80 -~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                       .+.++|+++|+||+|+.+.....+....+..              .......++.+||+++.|++++++++.+.++
T Consensus       271 ~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~--------------~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~  333 (390)
T PRK12298        271 PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVE--------------ALGWEGPVYLISAASGLGVKELCWDLMTFIE  333 (390)
T ss_pred             hhhcCCCEEEEEeCCccCChHHHHHHHHHHHH--------------HhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence             2346899999999998642211111111111              0001125899999999999999999987663

>PRK10218 GTP-binding protein; Provisional

Probab=99.54  E-value=2.9e-13  Score=107.87  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             cCCCCCc----eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          11 MPTLHPT----SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        11 ~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ..+.|.+    ...+.++++++++|||||+..|...+..+++.+|++++|+|+++.... ....++.....    .++|.
T Consensus        49 E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~  123 (607)
T PRK10218         49 EKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKP  123 (607)
T ss_pred             cccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCE
Confidence            3455654    356677889999999999999999999999999999999999864322 22333343332    36899


Q ss_pred             EEEEeCCCcCCcCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhh
Q psy2161          87 LILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANY  153 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~  153 (155)
                      ++++||+|+.+.....   ++...+.....         . -....++++.+||++|.          |+..+++.+.+.
T Consensus       124 IVviNKiD~~~a~~~~vl~ei~~l~~~l~~---------~-~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~  193 (607)
T PRK10218        124 IVVINKVDRPGARPDWVVDQVFDLFVNLDA---------T-DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH  193 (607)
T ss_pred             EEEEECcCCCCCchhHHHHHHHHHHhccCc---------c-ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence            9999999987533322   33333321000         0 01134779999999998          588888888877


Q ss_pred             cC
Q psy2161         154 ID  155 (155)
Q Consensus       154 i~  155 (155)
                      +|
T Consensus       194 iP  195 (607)
T PRK10218        194 VP  195 (607)
T ss_pred             CC
Confidence            64

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.53  E-value=6.1e-14  Score=111.77  Aligned_cols=112  Identities=19%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHh------HHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRV------WRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~------~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...+++++.++++|||||+.++...      ++.++.  ++|++++|+|+++.+.   ...+..++.+    .++|+++|
T Consensus        33 ~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~PiIIV  105 (591)
T TIGR00437        33 EGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPMILA  105 (591)
T ss_pred             EEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCEEEE
Confidence            4567788899999999998776432      444543  7999999999987432   2233333322    36899999


Q ss_pred             EeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          90 GNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        90 ~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +||+|+.+... ..+.....+.                 .+++++++||++|.|++++++++.+.
T Consensus       106 lNK~Dl~~~~~i~~d~~~L~~~-----------------lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437       106 LNLVDEAEKKGIRIDEEKLEER-----------------LGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             EehhHHHHhCCChhhHHHHHHH-----------------cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            99999854221 1122221111                 23579999999999999999999764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.53  E-value=7.3e-14  Score=107.77  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH-HHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE-SKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~-~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      .|+......++.+++++.+|||||++.|.......++.+|++++|+|++++..+.. ....+. ++...  ...|+++++
T Consensus        70 ~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~-~~~~~--~~~~iivvi  146 (425)
T PRK12317         70 VTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVF-LARTL--GINQLIVAI  146 (425)
T ss_pred             ccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHH-HHHHc--CCCeEEEEE
Confidence            45555667788888999999999998887666666789999999999986322211 122222 22211  235799999


Q ss_pred             eCCCcCCcC------CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          91 NKIDIFDAA------SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        91 nK~Dl~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      ||+|+.+..      ..+++...+...+            +....++++++||++|.|+++
T Consensus       147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g------------~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        147 NKMDAVNYDEKRYEEVKEEVSKLLKMVG------------YKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             EccccccccHHHHHHHHHHHHHHHHhhC------------CCcCcceEEEeecccCCCccc
Confidence            999986411      1123333332211            111246899999999999986

>cd00880 Era_like Era (E

Probab=99.53  E-value=2.1e-13  Score=90.47  Aligned_cols=121  Identities=24%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             ceeEEEEC-CEEEEEEEcCCChhhH-------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          17 TSEELSMG-DIVFTTHDLGGHVQAR-------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        17 ~~~~~~~~-~~~~~~~Dt~G~~~~~-------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      ....+..+ +..+.+|||||.....       ..+..+++.+|++++|+|+++........ +.....    ..+.|+++
T Consensus        35 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~iv  109 (163)
T cd00880          35 VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR----ERGKPVLL  109 (163)
T ss_pred             eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEE
Confidence            34444544 6899999999975532       35556888999999999999876665543 233332    24789999


Q ss_pred             EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+||+|+...............            .........++++||+++.|++++++++.+.+
T Consensus       110 v~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~  163 (163)
T cd00880         110 VLNKIDLLPEEEEEELLELRLL------------ILLLLLGLPVIAVSALTGEGIDELREALIEAL  163 (163)
T ss_pred             EEEccccCChhhHHHHHHHHHh------------hcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence            9999998653332222110011            01223456899999999999999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG4423|consensus

Probab=99.53  E-value=1.4e-15  Score=102.22  Aligned_cols=129  Identities=17%  Similarity=0.165  Sum_probs=102.6

Q ss_pred             cccCCCCCc--eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC-
Q psy2161           9 QHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT-   82 (155)
Q Consensus         9 ~~~pT~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~-   82 (155)
                      .|..|+|+.  ..-+.++.   +++++||.+||+++-.+..-||+.+.+..+|||++++.+|+.+..|..++.+...++ 
T Consensus        53 ~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpn  132 (229)
T KOG4423|consen   53 HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPN  132 (229)
T ss_pred             HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCC
Confidence            355777764  45556655   789999999999999999999999999999999999999999999999987655443 


Q ss_pred             --CCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          83 --DVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        83 --~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                        ..|+++..||||...   ......+..+...++                ...++++|+|.+.|+.|+.+.|++.
T Consensus       133 g~Pv~~vllankCd~e~~a~~~~~~~~d~f~keng----------------f~gwtets~Kenkni~Ea~r~lVe~  192 (229)
T KOG4423|consen  133 GTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENG----------------FEGWTETSAKENKNIPEAQRELVEK  192 (229)
T ss_pred             CCcchheeccchhccChHhhhhhHHHHHHHHhccC----------------ccceeeeccccccChhHHHHHHHHH
Confidence              478999999999754   122345555554432                2468999999999999999988764

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.52  E-value=3e-13  Score=95.03  Aligned_cols=119  Identities=18%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+++++.++.+|||||+..|...+...++.+|++++|+|+++...-. ....+ .++...  ..+++++|+||
T Consensus        64 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK  139 (208)
T cd04166          64 TIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNK  139 (208)
T ss_pred             CeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEc
Confidence            444456677778899999999999988777777889999999999998653221 11111 122211  12468889999


Q ss_pred             CCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          93 IDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        93 ~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      +|+.+...  ...+...+...          ...+......++++||++|.|+.+
T Consensus       140 ~D~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         140 MDLVDYSEEVFEEIVADYLAF----------AAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             hhcccCCHHHHHHHHHHHHHH----------HHHcCCCCceEEEEeCCCCCCCcc
Confidence            99864211  11222222110          001222345799999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK00089 era GTPase Era; Reviewed

Probab=99.52  E-value=5.1e-13  Score=98.36  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             EECCEEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161          22 SMGDIVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI   93 (155)
Q Consensus        22 ~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~   93 (155)
                      ..++.++.+|||||....        .......+.++|++++|+|+++.  +.....++...+.   ..+.|+++|+||+
T Consensus        49 ~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKi  123 (292)
T PRK00089         49 TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKI  123 (292)
T ss_pred             EcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECC
Confidence            335589999999996432        23445567899999999999873  2222333333332   2368999999999


Q ss_pred             CcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          94 DIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        94 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      |+..  ...++.......           . .......++++||++|.|++++++++.+.++
T Consensus       124 Dl~~--~~~~l~~~~~~l-----------~-~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        124 DLVK--DKEELLPLLEEL-----------S-ELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             cCCC--CHHHHHHHHHHH-----------H-hhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            9863  112222222110           0 0012357899999999999999999988763

>KOG0462|consensus

Probab=99.51  E-value=2.5e-13  Score=104.57  Aligned_cols=119  Identities=18%  Similarity=0.226  Sum_probs=87.4

Q ss_pred             eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          18 SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        18 ~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      ...+-+.+   +.++++||||+-.|..-...-+.-|+|+++|+|++..-.-+........+.     .+..+|.|+||+|
T Consensus       114 tasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKID  188 (650)
T KOG0462|consen  114 TASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKID  188 (650)
T ss_pred             eeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccC
Confidence            44555544   999999999999999988888999999999999987544443333333331     3678999999999


Q ss_pred             cCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        95 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ++..-+.....+..+.+.              ...-+++.+|||+|.|++++++.+.+.+|
T Consensus       189 lp~adpe~V~~q~~~lF~--------------~~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  189 LPSADPERVENQLFELFD--------------IPPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             CCCCCHHHHHHHHHHHhc--------------CCccceEEEEeccCccHHHHHHHHHhhCC
Confidence            987543333333333321              13347999999999999999999999875

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.50  E-value=8.7e-13  Score=94.39  Aligned_cols=137  Identities=15%  Similarity=0.158  Sum_probs=93.0

Q ss_pred             CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161          14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI   93 (155)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~   93 (155)
                      +......+.+++.++++|||||+..|...+..+++.+|++++|+|+++.... ....++....+    .++|+++++||+
T Consensus        52 i~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~  126 (237)
T cd04168          52 IFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKI  126 (237)
T ss_pred             eeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECc
Confidence            3334677788899999999999999999999999999999999999875433 22344444422    368999999999


Q ss_pred             CcCCc---CCHHHHHhhhcccCcc--CCC---------------------------------cccc--------ccc-cc
Q psy2161          94 DIFDA---ASEDEVRHFFGLYGLT--TGK---------------------------------EFTS--------REI-LQ  126 (155)
Q Consensus        94 Dl~~~---~~~~~i~~~~~~~~~~--~~~---------------------------------~~~~--------~~~-~~  126 (155)
                      |+...   ...+++...++...++  .+.                                 +...        ... ..
T Consensus       127 D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~  206 (237)
T cd04168         127 DRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK  206 (237)
T ss_pred             cccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            98642   2233444444332111  000                                 0000        000 01


Q ss_pred             CccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         127 MRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ..-++++..||.++.|+..+++.+.+.+|
T Consensus       207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         207 RKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             CCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence            23467889999999999999999998875

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.50  E-value=5.3e-13  Score=102.46  Aligned_cols=112  Identities=18%  Similarity=0.178  Sum_probs=75.3

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE----  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~----  101 (155)
                      .++++|||||+..|..........+|++++|+|++++.........+..+ ...  ...|+++|+||+|+.+....    
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            68999999999998877777777889999999998643111111222222 111  23579999999998652111    


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++...+..              ......+++++||++|.|+++++++|.+.+
T Consensus       162 ~~i~~~l~~--------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        162 EQIKEFVKG--------------TVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHhcc--------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            222222221              112346899999999999999999998754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.49  E-value=7e-13  Score=108.02  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=81.4

Q ss_pred             CceeEEEECCEEEEEEEcCCCh----------hhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHV----------QARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      .....+.+++..+.+|||||..          .+..+ ...+++.||++++|+|+++..+..... ++..+..    .++
T Consensus       488 ~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~  562 (712)
T PRK09518        488 PVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGR  562 (712)
T ss_pred             cceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCC
Confidence            3456677888899999999953          12222 234578999999999999887776543 3444432    368


Q ss_pred             cEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        85 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      |+++|+||+|+.+......+...+...            -......+++.+||++|.|++++++.+.+.
T Consensus       563 piIiV~NK~DL~~~~~~~~~~~~~~~~------------l~~~~~~~ii~iSAktg~gv~~L~~~i~~~  619 (712)
T PRK09518        563 ALVLVFNKWDLMDEFRRQRLERLWKTE------------FDRVTWARRVNLSAKTGWHTNRLAPAMQEA  619 (712)
T ss_pred             CEEEEEEchhcCChhHHHHHHHHHHHh------------ccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            999999999986532222232222210            001123467899999999999999998764

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.49  E-value=5.3e-13  Score=92.52  Aligned_cols=129  Identities=19%  Similarity=0.248  Sum_probs=80.0

Q ss_pred             CCcccCCCCCce--eEEEECCEEEEEEEcCCC----------hhhHHhHHhhcCCC---CEEEEEEECCCCCchHHHHHH
Q psy2161           7 TAQHMPTLHPTS--EELSMGDIVFTTHDLGGH----------VQARRVWRDYFPAV---DAIVFIIDASDRSRFPESKYE   71 (155)
Q Consensus         7 ~~~~~pT~~~~~--~~~~~~~~~~~~~Dt~G~----------~~~~~~~~~~~~~a---d~ii~v~D~~~~~~~~~~~~~   71 (155)
                      ...+.|+.|.+.  ..+.. +.++.+|||||.          +.+......+++.+   +++++|+|.+.+.+...  .+
T Consensus        50 ~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~  126 (196)
T PRK00454         50 LARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQ  126 (196)
T ss_pred             cccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HH
Confidence            455667776542  11222 478999999993          44555666666654   67888999876543322  22


Q ss_pred             HHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          72 LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      +...+..   .+.|+++++||+|+.+....+.....+..             .+......++++||++|.|++++++++.
T Consensus       127 i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-------------~l~~~~~~~~~~Sa~~~~gi~~l~~~i~  190 (196)
T PRK00454        127 MIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-------------ALKFGDDEVILFSSLKKQGIDELRAAIA  190 (196)
T ss_pred             HHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-------------HHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence            2222222   36899999999998642222221111111             0111245789999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       191 ~~~  193 (196)
T PRK00454        191 KWL  193 (196)
T ss_pred             HHh
Confidence            765

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.49  E-value=3.6e-13  Score=107.03  Aligned_cols=116  Identities=17%  Similarity=0.187  Sum_probs=74.5

Q ss_pred             EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC---
Q psy2161          27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS---  100 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~---  100 (155)
                      .+.+|||||++.|..++..+++.+|++++|+|+++   +++++.+    ..+ .   ..++|+++++||+|+.+...   
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l-~---~~~vpiIVv~NK~Dl~~~~~~~~  141 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL----NIL-R---MYKTPFVVAANKIDRIPGWRSHE  141 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHH-H---HcCCCEEEEEECCCccchhhhcc
Confidence            48999999999999999999999999999999986   3333332    222 1   13689999999999864211   


Q ss_pred             -----------HHHHHh-----------hhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         101 -----------EDEVRH-----------FFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       101 -----------~~~i~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                                 ...+..           .+...++.....  ....-.....+++++||++|.|+++++.++..
T Consensus       142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~--~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF--DRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhh--hhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence                       011111           011101000000  00000123578999999999999999998753

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.48  E-value=3.2e-13  Score=90.26  Aligned_cols=111  Identities=23%  Similarity=0.354  Sum_probs=75.5

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChh------hHHhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQ------ARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~------~~~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      |+......+.+++..+.++|+||..+      .......++  ...|++++|+|+++   ++.......+++..    ++
T Consensus        34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~----g~  106 (156)
T PF02421_consen   34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLEL----GI  106 (156)
T ss_dssp             SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHT----TS
T ss_pred             CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHc----CC
Confidence            44445678888999999999999422      223445554  58999999999986   33334444555422    69


Q ss_pred             cEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161          85 PILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        85 piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      |+++++||+|...    .+..+.+.+.++                    ++++.+||+++.|++++++.+
T Consensus       107 P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------------------~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  107 PVVVVLNKMDEAERKGIEIDAEKLSERLG--------------------VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             SEEEEEETHHHHHHTTEEE-HHHHHHHHT--------------------S-EEEEBTTTTBTHHHHHHHH
T ss_pred             CEEEEEeCHHHHHHcCCEECHHHHHHHhC--------------------CCEEEEEeCCCcCHHHHHhhC
Confidence            9999999999754    234455555554                    489999999999999999864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.48  E-value=1.4e-12  Score=93.16  Aligned_cols=122  Identities=19%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhH-------HhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHH----------
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVWRDYFPAVDAIVFIIDASDRSR-FPESKYELD----------   73 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~----------   73 (155)
                      +|..+....+.+++.++++||+||..+..       .....+++++|++++|+|++++.. ...+...++          
T Consensus        33 tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~  112 (233)
T cd01896          33 TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRP  112 (233)
T ss_pred             ccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCC
Confidence            46666677888899999999999974321       234467899999999999987542 222222221          


Q ss_pred             ------------------------------HHHhC------------------------CCCCCCcEEEEEeCCCcCCcC
Q psy2161          74 ------------------------------SLLAD------------------------DALTDVPILILGNKIDIFDAA   99 (155)
Q Consensus        74 ------------------------------~~~~~------------------------~~~~~~piilv~nK~Dl~~~~   99 (155)
                                                    .+++.                        ....-+|+++|+||+|+.+  
T Consensus       113 ~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~--  190 (233)
T cd01896         113 PNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS--  190 (233)
T ss_pred             CeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC--
Confidence                                          11100                        0112369999999999843  


Q ss_pred             CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         100 SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       100 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                       .++.......                   ..++++||++|.|++++++.+.+.++
T Consensus       191 -~~~~~~~~~~-------------------~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         191 -IEELDLLARQ-------------------PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             -HHHHHHHhcC-------------------CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence             3333332211                   24889999999999999999998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04163 Era Era subfamily

Probab=99.47  E-value=1.9e-12  Score=86.73  Aligned_cols=114  Identities=20%  Similarity=0.228  Sum_probs=74.7

Q ss_pred             EEECCEEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          21 LSMGDIVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        21 ~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      +...+..+.+|||||....        .......+..+|++++|+|++++.  .....++...+..   .+.|+++|+||
T Consensus        46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK  120 (168)
T cd04163          46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNK  120 (168)
T ss_pred             EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEc
Confidence            3445689999999996432        224456688999999999998762  2222233232222   25899999999


Q ss_pred             CCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          93 IDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        93 ~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+.. .....+....+..               ......++++|++++.|+++++++|.+.+
T Consensus       121 ~Dl~~~~~~~~~~~~~~~~---------------~~~~~~~~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         121 IDLVKDKEDLLPLLEKLKE---------------LGPFAEIFPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             hhccccHHHHHHHHHHHHh---------------ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence            99863 1112222222221               11135789999999999999999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.47  E-value=1.4e-12  Score=100.89  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             eEEEECCEEEEEEEcCCChh----------hH-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161          19 EELSMGDIVFTTHDLGGHVQ----------AR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~----------~~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      ..+.+++..+.+|||||...          +. .....+++.+|++++|+|++++.+.... .++..+..    .++|++
T Consensus       214 ~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~i  288 (435)
T PRK00093        214 TPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALV  288 (435)
T ss_pred             EEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEE
Confidence            44566889999999999532          11 1123467899999999999987665443 23333322    368999


Q ss_pred             EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +++||+|+.+.....++.+.+...            -......+++++||++|.|++++++++.+
T Consensus       289 vv~NK~Dl~~~~~~~~~~~~~~~~------------l~~~~~~~i~~~SA~~~~gv~~l~~~i~~  341 (435)
T PRK00093        289 IVVNKWDLVDEKTMEEFKKELRRR------------LPFLDYAPIVFISALTGQGVDKLLEAIDE  341 (435)
T ss_pred             EEEECccCCCHHHHHHHHHHHHHh------------cccccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            999999986422222333322210            00113457999999999999999998765

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.47  E-value=8e-13  Score=90.69  Aligned_cols=117  Identities=19%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             CCcccCCCCCc--eeEEEECCEEEEEEEcCCC----------hhhHHhHHhhcCC---CCEEEEEEECCCCCchHHHHHH
Q psy2161           7 TAQHMPTLHPT--SEELSMGDIVFTTHDLGGH----------VQARRVWRDYFPA---VDAIVFIIDASDRSRFPESKYE   71 (155)
Q Consensus         7 ~~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G~----------~~~~~~~~~~~~~---ad~ii~v~D~~~~~~~~~~~~~   71 (155)
                      ...+.++.|.+  ...+..++ .+.+|||||.          ..+......|++.   ++++++|+|++++-+.... .+
T Consensus        44 ~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~  121 (179)
T TIGR03598        44 LARTSKTPGRTQLINFFEVND-GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EM  121 (179)
T ss_pred             cccccCCCCcceEEEEEEeCC-cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HH
Confidence            34556676654  22333343 7999999994          2344444556654   5799999999875443332 22


Q ss_pred             HHHHHhCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          72 LDSLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      +. .+..   .++|+++++||+|+.....    ..++.+.+...               ...+.++++||++|+|++
T Consensus       122 ~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---------------~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       122 LE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---------------ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---------------cCCCceEEEECCCCCCCC
Confidence            22 2222   3689999999999864221    22333333321               123579999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1159 Era GTPase [General function prediction only]

Probab=99.46  E-value=3.4e-12  Score=92.18  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=85.5

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ++|...-...+..++.++.|.||||-..        ........+.++|+++||+|++....-  ...++-+.++.   .
T Consensus        39 QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~  113 (298)
T COG1159          39 QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK---T  113 (298)
T ss_pred             chhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---c
Confidence            3444444566666789999999999432        334456678899999999999874333  22344444332   3


Q ss_pred             CCcEEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          83 DVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +.|+++++||+|...... ...+...+..               ......++++||++|.|++.+.+.+...+|
T Consensus       114 ~~pvil~iNKID~~~~~~~l~~~~~~~~~---------------~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp  172 (298)
T COG1159         114 KTPVILVVNKIDKVKPKTVLLKLIAFLKK---------------LLPFKEIVPISALKGDNVDTLLEIIKEYLP  172 (298)
T ss_pred             CCCeEEEEEccccCCcHHHHHHHHHHHHh---------------hCCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence            579999999999765333 2233333322               112348999999999999999999988775

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.2e-12  Score=100.81  Aligned_cols=111  Identities=20%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE  101 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~  101 (155)
                      .-.+.|.||||++.|..+...-.+=+|.+++|+|+++   |++.+.+        ++....+.|++++.||+|..+ ..+
T Consensus        54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI--------~hak~a~vP~iVAiNKiDk~~-~np  124 (509)
T COG0532          54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI--------NHAKAAGVPIVVAINKIDKPE-ANP  124 (509)
T ss_pred             CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH--------HHHHHCCCCEEEEEecccCCC-CCH
Confidence            3789999999999999999999999999999999987   3333332        222335799999999999875 445


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..+...+...++.+        +.......++++||++|.|+.+++..+.-
T Consensus       125 ~~v~~el~~~gl~~--------E~~gg~v~~VpvSA~tg~Gi~eLL~~ill  167 (509)
T COG0532         125 DKVKQELQEYGLVP--------EEWGGDVIFVPVSAKTGEGIDELLELILL  167 (509)
T ss_pred             HHHHHHHHHcCCCH--------hhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence            55555555433221        12234578999999999999999988753

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.45  E-value=7.5e-13  Score=105.91  Aligned_cols=123  Identities=15%  Similarity=0.156  Sum_probs=80.3

Q ss_pred             CCCCCceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEE
Q psy2161          12 PTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILIL   89 (155)
Q Consensus        12 pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv   89 (155)
                      +|+......+.. ++..+.+|||||++.|...+...+.++|++++|+|+++... ......+. ++...   ++| +++|
T Consensus        36 iTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-~qT~ehl~-il~~l---gi~~iIVV  110 (614)
T PRK10512         36 MTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-AQTREHLA-ILQLT---GNPMLTVA  110 (614)
T ss_pred             ceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-HHHHHHHH-HHHHc---CCCeEEEE
Confidence            333333334433 45789999999999998888888999999999999976321 12222222 22221   345 6899


Q ss_pred             EeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          90 GNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        90 ~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +||+|+.+....    .++...+..              ......+++++||++|.|+++++++|.+.
T Consensus       111 lNKiDlv~~~~~~~v~~ei~~~l~~--------------~~~~~~~ii~VSA~tG~gI~~L~~~L~~~  164 (614)
T PRK10512        111 LTKADRVDEARIAEVRRQVKAVLRE--------------YGFAEAKLFVTAATEGRGIDALREHLLQL  164 (614)
T ss_pred             EECCccCCHHHHHHHHHHHHHHHHh--------------cCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence            999998642211    223333222              11123579999999999999999998764

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.44  E-value=6.8e-13  Score=100.83  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=82.3

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC---HH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS---ED  102 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~  102 (155)
                      +.++++||||+-.|.--....+..|.|.++|+|+++.-.-+.+.+....+-     .+..++-|+||+||+...+   ..
T Consensus        76 Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~  150 (603)
T COG0481          76 YVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQ  150 (603)
T ss_pred             EEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHH
Confidence            999999999999887766777888999999999987544444444444442     3678999999999986322   23


Q ss_pred             HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ++...++.                 ..-..+.||||+|.||+++++.+.+.+|
T Consensus       151 eIe~~iGi-----------------d~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         151 EIEDIIGI-----------------DASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             HHHHHhCC-----------------CcchheeEecccCCCHHHHHHHHHhhCC
Confidence            44444444                 3346799999999999999999998876

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.43  E-value=6.1e-13  Score=95.61  Aligned_cols=95  Identities=20%  Similarity=0.211  Sum_probs=72.2

Q ss_pred             hhhHHhHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhcccCcc
Q psy2161          37 VQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLT  114 (155)
Q Consensus        37 ~~~~~~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~~~~~~  114 (155)
                      +++..+.+.+++++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+||.+.... .+....+.     
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-----   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-----   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence            556777778999999999999999877 88888888876532    47899999999999642111 11122221     


Q ss_pred             CCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         115 TGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                                  ..++.++++||++|.|++++|+.+.+
T Consensus        95 ------------~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 ------------NIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             ------------HCCCeEEEEecCCchhHHHHHhhhcC
Confidence                        13468999999999999999998865

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.43  E-value=7e-12  Score=87.24  Aligned_cols=110  Identities=22%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCc
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDI   95 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl   95 (155)
                      ....++.++.++.+.||||+..|.......+..+|++++|+|++..-.- .....+..+..    .++| +++++||+|+
T Consensus        56 ~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~  130 (195)
T cd01884          56 AHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADM  130 (195)
T ss_pred             eeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCC
Confidence            3455566779999999999999888788888999999999999764221 12223333321    2455 7899999998


Q ss_pred             CCcC-----CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCCh
Q psy2161          96 FDAA-----SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGF  143 (155)
Q Consensus        96 ~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  143 (155)
                      ....     ..+++...+...+            +.....+++++||++|.|+
T Consensus       131 ~~~~~~~~~~~~~i~~~l~~~g------------~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         131 VDDEELLELVEMEVRELLSKYG------------FDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhc------------ccccCCeEEEeeCccccCC
Confidence            5311     1123333333211            1224578999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.42  E-value=2.4e-13  Score=103.84  Aligned_cols=145  Identities=21%  Similarity=0.359  Sum_probs=103.7

Q ss_pred             ccCCCCCceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhC
Q psy2161          10 HMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLAD   78 (155)
Q Consensus        10 ~~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~   78 (155)
                      ..+|.|+....+.+ ++..+.++|+||++..+..|.+++.++++||||+++++          .+.+.+....++.+.+.
T Consensus       219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~  298 (389)
T PF00503_consen  219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN  298 (389)
T ss_dssp             ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred             cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence            46899999999999 99999999999999999999999999999999999864          24467778889999988


Q ss_pred             CCCCCCcEEEEEeCCCcCC-cCCHHH-HHhhhcccCccC-CCcccc-------ccc---ccC--ccEEEEEeeeccCCCh
Q psy2161          79 DALTDVPILILGNKIDIFD-AASEDE-VRHFFGLYGLTT-GKEFTS-------REI---LQM--RPIELFMCSVLKRQGF  143 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~-~~~~~~-i~~~~~~~~~~~-~~~~~~-------~~~---~~~--~~~~~~~~Sa~~~~~i  143 (155)
                      ..+.+.|++|++||.|+.. ++.... +...+..+.+.. ......       +..   ...  +.+.++.++|.+..++
T Consensus       299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~  378 (389)
T PF00503_consen  299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI  378 (389)
T ss_dssp             GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred             cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence            8888999999999999754 221111 344444432220 111100       011   111  6778899999999999


Q ss_pred             HHHHHHHHhhc
Q psy2161         144 GNGFRWLANYI  154 (155)
Q Consensus       144 ~~~~~~l~~~i  154 (155)
                      ..+|..+.+.|
T Consensus       379 ~~v~~~v~~~i  389 (389)
T PF00503_consen  379 RKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhcCcC
Confidence            99999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.40  E-value=4.8e-12  Score=100.82  Aligned_cols=114  Identities=14%  Similarity=0.153  Sum_probs=73.6

Q ss_pred             EEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----
Q psy2161          28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----  100 (155)
Q Consensus        28 ~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----  100 (155)
                      +.+|||||+..|..++...++.+|++++|+|+++   +++++.+    ..+ ..   .++|+++++||+|+.....    
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~-~~---~~vpiIvviNK~D~~~~~~~~~~  144 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NIL-KR---RKTPFVVAANKIDRIPGWKSTED  144 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHH-HH---cCCCEEEEEECcCCchhhhhhcC
Confidence            7899999999999999999999999999999986   3444332    222 11   3689999999999853111    


Q ss_pred             ----------HHH-----------HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161         101 ----------EDE-----------VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus       101 ----------~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                                ...           +...+...++....... . .-....++++++||++|.|++++++.+.
T Consensus       145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~-~-~~~~~~v~ivpiSA~tGeGi~dLl~~i~  214 (586)
T PRK04004        145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDR-V-KDFTKTVAIVPVSAKTGEGIPDLLMVLA  214 (586)
T ss_pred             chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhh-h-hccCCCceEeeccCCCCCChHHHHHHHH
Confidence                      011           11122211111000000 0 0012357899999999999999888765

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.40  E-value=4.2e-12  Score=100.03  Aligned_cols=87  Identities=23%  Similarity=0.299  Sum_probs=63.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ...++++++++++|||||+..|......+++.+|++++|+|+++.... ....++....    ..++|+++++||+|+..
T Consensus        71 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         71 VMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             eEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEEEECCcccc
Confidence            566888899999999999999988777789999999999999864322 2233333332    24789999999999865


Q ss_pred             cCC---HHHHHhhhc
Q psy2161          98 AAS---EDEVRHFFG  109 (155)
Q Consensus        98 ~~~---~~~i~~~~~  109 (155)
                      ...   ..++.+.++
T Consensus       146 a~~~~~l~~i~~~l~  160 (526)
T PRK00741        146 REPLELLDEIEEVLG  160 (526)
T ss_pred             cCHHHHHHHHHHHhC
Confidence            332   244544444

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.39  E-value=5.2e-12  Score=95.84  Aligned_cols=130  Identities=22%  Similarity=0.233  Sum_probs=88.1

Q ss_pred             CCCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEECCCCCchHH
Q psy2161           1 MLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDASDRSRFPE   67 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~   67 (155)
                      ||.+.+.....-+-|++    ....++.+..|.+.||||-..         .+......+..||++|||+|+...-+  .
T Consensus        22 RL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git--~   99 (444)
T COG1160          22 RLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT--P   99 (444)
T ss_pred             HHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC--H
Confidence            34455554445555554    677888899999999999542         22344566779999999999965322  2


Q ss_pred             HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161          68 SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        68 ~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      ....+.+.+.   ..++|++||+||+|...  ......++..+                 ..-..+.+||..|.|+.+++
T Consensus       100 ~D~~ia~~Lr---~~~kpviLvvNK~D~~~--~e~~~~efysl-----------------G~g~~~~ISA~Hg~Gi~dLl  157 (444)
T COG1160         100 ADEEIAKILR---RSKKPVILVVNKIDNLK--AEELAYEFYSL-----------------GFGEPVPISAEHGRGIGDLL  157 (444)
T ss_pred             HHHHHHHHHH---hcCCCEEEEEEcccCch--hhhhHHHHHhc-----------------CCCCceEeehhhccCHHHHH
Confidence            2334444443   23699999999999753  22223333332                 11268999999999999999


Q ss_pred             HHHHhhc
Q psy2161         148 RWLANYI  154 (155)
Q Consensus       148 ~~l~~~i  154 (155)
                      +++.+.+
T Consensus       158 d~v~~~l  164 (444)
T COG1160         158 DAVLELL  164 (444)
T ss_pred             HHHHhhc
Confidence            9998875

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.39  E-value=2.5e-11  Score=86.18  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             eEEEECCEEEEEEEcCCChhhHHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          19 EELSMGDIVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ..++.++..+++.||||++.|.......+.  .+|++++|+|++.... .....++..+..    .++|+++|+||+|+.
T Consensus        77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~  151 (224)
T cd04165          77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLA  151 (224)
T ss_pred             eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECcccc
Confidence            445667899999999999998766555554  6899999999876432 222333333321    258999999999985


Q ss_pred             CcCC----HHHHHhhhcccCccC-CC-----cc---cccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          97 DAAS----EDEVRHFFGLYGLTT-GK-----EF---TSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        97 ~~~~----~~~i~~~~~~~~~~~-~~-----~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +...    ..++...+...+... +.     ..   +..+.......+++.+||++|.|++++...|..
T Consensus       152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            4211    223333333211100 00     00   000111123458999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK13351 elongation factor G; Reviewed

Probab=99.39  E-value=2e-11  Score=99.31  Aligned_cols=83  Identities=17%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      +.+|+......+.++++++++|||||+..|...+..+++.+|++++|+|+++.........| ....    ..++|++++
T Consensus        57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiv  131 (687)
T PRK13351         57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIF  131 (687)
T ss_pred             cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEE
Confidence            55677777788999999999999999999999999999999999999999886665543333 3332    136899999


Q ss_pred             EeCCCcCC
Q psy2161          90 GNKIDIFD   97 (155)
Q Consensus        90 ~nK~Dl~~   97 (155)
                      +||+|+.+
T Consensus       132 iNK~D~~~  139 (687)
T PRK13351        132 INKMDRVG  139 (687)
T ss_pred             EECCCCCC
Confidence            99999875

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.37  E-value=2.4e-11  Score=86.12  Aligned_cols=67  Identities=21%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ++++++|||||+..|......+++.+|++++|+|+++...... ...+.....    .++|+++++||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            6899999999999999999999999999999999987654433 233333322    257999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.37  E-value=2.6e-13  Score=86.92  Aligned_cols=67  Identities=22%  Similarity=0.366  Sum_probs=55.2

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH---HHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK---YELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~---~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      ..+.+||++|+..+...+..+++++|++++|||++++.+++.+.   .|+..+.+.  ..+.|+++|+||.|
T Consensus        50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            57999999999988888887899999999999999999998864   456666432  24599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.35  E-value=1.3e-11  Score=102.91  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--H
Q psy2161          27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS--E  101 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~--~  101 (155)
                      .+.||||||+..|..+....++.+|++++|+|+++   +++++.    +..+. .   .++|+++|+||+|+.....  .
T Consensus       527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~----I~~lk-~---~~iPiIVViNKiDL~~~~~~~~  598 (1049)
T PRK14845        527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEA----INILR-Q---YKTPFVVAANKIDLIPGWNISE  598 (1049)
T ss_pred             cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHH----HHHHH-H---cCCCEEEEEECCCCcccccccc
Confidence            38999999999999888888899999999999986   333332    22222 1   2589999999999864211  0


Q ss_pred             ------------HHHHhhh-----------cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         102 ------------DEVRHFF-----------GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       102 ------------~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                                  +...+.+           ...++.+...  ...+-....++++++||++|.|+++++.++..
T Consensus       599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~--~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRF--DRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhh--hhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence                        1111111           1111000000  00001134678999999999999999988753

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.35  E-value=1e-11  Score=96.26  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----H
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----E  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~  101 (155)
                      .++.|+|+||++.|...+...+..+|++++|+|++...........+... ..  ..-.|+++|+||+|+.+...    .
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~--lgi~~iIVvlNKiDlv~~~~~~~~~  193 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EI--MKLKHIIILQNKIDLVKEAQAQDQY  193 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HH--cCCCcEEEEEecccccCHHHHHHHH
Confidence            57999999999999888777788999999999998631111112222211 11  12357999999999864211    1


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +++.+.+..              ......+++++||++|.|++++++.|.+.++
T Consensus       194 ~ei~~~l~~--------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        194 EEIRNFVKG--------------TIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHh--------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            222222211              1124568999999999999999999986543

>KOG1145|consensus

Probab=99.35  E-value=2.2e-11  Score=94.07  Aligned_cols=124  Identities=18%  Similarity=0.143  Sum_probs=87.9

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      -+|-...++. +|.+++|.||||+..|..|+..-.+-+|++++|+.+.|.-.-    +.++.+ ++....++|+++.+||
T Consensus       189 hIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp----QT~EaI-khAk~A~VpiVvAinK  262 (683)
T KOG1145|consen  189 HIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP----QTLEAI-KHAKSANVPIVVAINK  262 (683)
T ss_pred             eeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH----hHHHHH-HHHHhcCCCEEEEEec
Confidence            3444455555 779999999999999999999999999999999988763211    122222 2333468999999999


Q ss_pred             CCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          93 IDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        93 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      +|.++. +++.+...+-.+++.        -+--....+++++||++|.|++.+-+.+.
T Consensus       263 iDkp~a-~pekv~~eL~~~gi~--------~E~~GGdVQvipiSAl~g~nl~~L~eail  312 (683)
T KOG1145|consen  263 IDKPGA-NPEKVKRELLSQGIV--------VEDLGGDVQVIPISALTGENLDLLEEAIL  312 (683)
T ss_pred             cCCCCC-CHHHHHHHHHHcCcc--------HHHcCCceeEEEeecccCCChHHHHHHHH
Confidence            998764 444444444433221        01122467899999999999998887764

>KOG0085|consensus

Probab=99.33  E-value=4.1e-13  Score=93.92  Aligned_cols=146  Identities=18%  Similarity=0.330  Sum_probs=118.9

Q ss_pred             CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHHH
Q psy2161           7 TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSLL   76 (155)
Q Consensus         7 ~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~~   76 (155)
                      ....+||.|+....++..++.|.+.|.||+++-+..|-+++.+.-.++|.+.++          +.+.+++.+.++..++
T Consensus       180 LRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi  259 (359)
T KOG0085|consen  180 LRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII  259 (359)
T ss_pred             heeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999999887554          3667788889999999


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCccccccc-------cc---CccEEEEEeeeccCCChHH
Q psy2161          77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREI-------LQ---MRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~Sa~~~~~i~~  145 (155)
                      ..+...+.++|+.+||.|+.+ ++....+..++..+.+|+.+..++..-       .+   .+.+.-+.++|.+..||.-
T Consensus       260 ~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRf  339 (359)
T KOG0085|consen  260 TYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRF  339 (359)
T ss_pred             ccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHH
Confidence            999999999999999999876 677788889998887775444433221       11   2344567889999999998


Q ss_pred             HHHHHHh
Q psy2161         146 GFRWLAN  152 (155)
Q Consensus       146 ~~~~l~~  152 (155)
                      +|..+.+
T Consensus       340 VFaaVkD  346 (359)
T KOG0085|consen  340 VFAAVKD  346 (359)
T ss_pred             HHHHHHH
Confidence            8877654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.33  E-value=3.3e-11  Score=92.26  Aligned_cols=119  Identities=20%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             eEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcCC
Q psy2161          19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIFD   97 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~~   97 (155)
                      ..+..++.++.++||||++.|.......+..+|++++|+|++....- .....+..+..    .++| +++++||+|+.+
T Consensus        68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~  142 (394)
T PRK12736         68 VEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVD  142 (394)
T ss_pred             eEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcc
Confidence            34444668999999999999887777778899999999999763221 22233333321    2567 678999999863


Q ss_pred             cCC-----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--------ChHHHHHHHHhhc
Q psy2161          98 AAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--------GFGNGFRWLANYI  154 (155)
Q Consensus        98 ~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~i  154 (155)
                      ...     .+++...+...+            ......+++++||++|.        ++.++++.+.+.+
T Consensus       143 ~~~~~~~i~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        143 DEELLELVEMEVRELLSEYD------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhC------------CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            111     112333322211            11234689999999983        5788888887654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.33  E-value=1.9e-11  Score=94.78  Aligned_cols=116  Identities=18%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchH-------HHHHHHHHHHhCCCCCCC-
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFP-------ESKYELDSLLADDALTDV-   84 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~-------~~~~~l~~~~~~~~~~~~-   84 (155)
                      |+......++.+++.++++|+||++.|.......++.+|++|+|+|+++. .|+       ..+..+... ..   .++ 
T Consensus        72 Ti~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi~  146 (447)
T PLN00043         72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGVK  146 (447)
T ss_pred             eEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCCC
Confidence            34344566677789999999999999999999999999999999999862 221       222222222 11   245 


Q ss_pred             cEEEEEeCCCcCC-cCC-------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          85 PILILGNKIDIFD-AAS-------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        85 piilv~nK~Dl~~-~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      ++++++||+|+.+ ...       .+++..++...+            +....++++++||++|.|+.+
T Consensus       147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g------------~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG------------YNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeccccccccc
Confidence            5788999999752 111       233444433311            122357899999999999853

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.33  E-value=2.4e-11  Score=93.28  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+++++.++.++||||+..|.......+..+|++++|+|++....-.....+ . +....  ...++++++||
T Consensus        67 Tid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~-~~~~~--~~~~iivviNK  142 (406)
T TIGR02034        67 TIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-Y-IASLL--GIRHVVLAVNK  142 (406)
T ss_pred             CeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-H-HHHHc--CCCcEEEEEEe
Confidence            44445667777889999999999999987777788999999999999754221111111 1 11111  23479999999


Q ss_pred             CCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          93 IDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        93 ~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      +|+.+...  .+++...+...          .........+++++||++|.|+.+
T Consensus       143 ~D~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       143 MDLVDYDEEVFENIKKDYLAF----------AEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             cccccchHHHHHHHHHHHHHH----------HHHcCCCCccEEEeecccCCCCcc
Confidence            99864111  11222222110          000111346799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.33  E-value=3.7e-11  Score=91.50  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhH--------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQAR--------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      +|..+-...++++|+.+.+.||+|.+...        ......+++||.++||+|++.+.+-... ..+.     ....+
T Consensus       251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~-----~~~~~  324 (454)
T COG0486         251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE-----LLPKK  324 (454)
T ss_pred             CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH-----hcccC
Confidence            55666688999999999999999965421        2234457899999999999885222211 1122     12347


Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +|+++|.||.|+......... +..                   ...+++.+|+++|.|++.+.+.+.+.
T Consensus       325 ~~~i~v~NK~DL~~~~~~~~~-~~~-------------------~~~~~i~iSa~t~~Gl~~L~~~i~~~  374 (454)
T COG0486         325 KPIIVVLNKADLVSKIELESE-KLA-------------------NGDAIISISAKTGEGLDALREAIKQL  374 (454)
T ss_pred             CCEEEEEechhcccccccchh-hcc-------------------CCCceEEEEecCccCHHHHHHHHHHH
Confidence            899999999999764432222 111                   12368999999999999999988764

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.32  E-value=1.5e-11  Score=100.59  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=76.2

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHH----------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARR----------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP   85 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p   85 (155)
                      ...+.+++.++++|||||..++..          ....++  ..+|++++|+|+++.++.   ..+..++.+    .++|
T Consensus        42 ~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giP  114 (772)
T PRK09554         42 EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIP  114 (772)
T ss_pred             EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCC
Confidence            445667789999999999876532          133443  489999999999875432   334444432    2689


Q ss_pred             EEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          86 ILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        86 iilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +++++||+|+.+... ..+.....+.                 .+++++++||++|.|++++++.+.+.
T Consensus       115 vIvVlNK~Dl~~~~~i~id~~~L~~~-----------------LG~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        115 CIVALNMLDIAEKQNIRIDIDALSAR-----------------LGCPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             EEEEEEchhhhhccCcHHHHHHHHHH-----------------hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence            999999999864221 1222222121                 23579999999999999999988653

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.31  E-value=7.1e-11  Score=79.25  Aligned_cols=127  Identities=19%  Similarity=0.200  Sum_probs=77.5

Q ss_pred             CCcccCCCCCce--eEEEECCEEEEEEEcCCC----------hhhHHhHHhhcC---CCCEEEEEEECCCCCchH--HHH
Q psy2161           7 TAQHMPTLHPTS--EELSMGDIVFTTHDLGGH----------VQARRVWRDYFP---AVDAIVFIIDASDRSRFP--ESK   69 (155)
Q Consensus         7 ~~~~~pT~~~~~--~~~~~~~~~~~~~Dt~G~----------~~~~~~~~~~~~---~ad~ii~v~D~~~~~~~~--~~~   69 (155)
                      .....+|.+.+.  ..+... ..+.+|||||.          +.+...+..|++   .++++++++|.+...+..  .+.
T Consensus        25 ~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~  103 (170)
T cd01876          25 LARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEML  103 (170)
T ss_pred             eeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHH
Confidence            344556666542  223333 39999999993          234555566665   356889999987653222  222


Q ss_pred             HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc--cCccEEEEEeeeccCCChHHHH
Q psy2161          70 YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL--QMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        70 ~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      .|+...       +.|+++++||+|+............+..             .+  .....+++++||+++.|+.+++
T Consensus       104 ~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~Sa~~~~~~~~l~  163 (170)
T cd01876         104 DWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKK-------------ELKLFEIDPPIILFSSLKGQGIDELR  163 (170)
T ss_pred             HHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHH-------------HHHhccCCCceEEEecCCCCCHHHHH
Confidence            333322       4799999999998542211111111111             01  1234578899999999999999


Q ss_pred             HHHHhhc
Q psy2161         148 RWLANYI  154 (155)
Q Consensus       148 ~~l~~~i  154 (155)
                      ++|.+.+
T Consensus       164 ~~l~~~~  170 (170)
T cd01876         164 ALIEKWL  170 (170)
T ss_pred             HHHHHhC
Confidence            9998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1489|consensus

Probab=99.31  E-value=2.5e-11  Score=88.29  Aligned_cols=123  Identities=20%  Similarity=0.306  Sum_probs=84.4

Q ss_pred             CCCCCceeEEEECC-EEEEEEEcCCChh----hHHhHHh---hcCCCCEEEEEEECCCC---CchHHHHHHHHHHHh-CC
Q psy2161          12 PTLHPTSEELSMGD-IVFTTHDLGGHVQ----ARRVWRD---YFPAVDAIVFIIDASDR---SRFPESKYELDSLLA-DD   79 (155)
Q Consensus        12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~----~~~~~~~---~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~-~~   79 (155)
                      +|+-++...+.+++ .++.+.|.||--.    .+.+...   -+..|++++||+|++.+   +.++.+..+..++-. ..
T Consensus       229 TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek  308 (366)
T KOG1489|consen  229 TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK  308 (366)
T ss_pred             eeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence            44445555777777 4599999999432    2222222   25689999999999987   666666555544432 23


Q ss_pred             CCCCCcEEEEEeCCCcCCcC-CH-HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          80 ALTDVPILILGNKIDIFDAA-SE-DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+.+.|.++|+||+|+.+.. .. .++...++.                   -+++++||++++|+++++..|.+.
T Consensus       309 ~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~-------------------~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  309 GLADRPALIVANKIDLPEAEKNLLSSLAKRLQN-------------------PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             hhccCceEEEEeccCchhHHHHHHHHHHHHcCC-------------------CcEEEeeeccccchHHHHHHHhhc
Confidence            55789999999999986422 11 334444333                   269999999999999999988754

>cd04167 Snu114p Snu114p subfamily

Probab=99.30  E-value=5.8e-11  Score=83.69  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=53.0

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      +.+++|||||+..+...+..+++.+|++++|+|+++..+... ..++.....    .++|+++|+||+|+.
T Consensus        71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            899999999999998888899999999999999987655532 334443321    258999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.30  E-value=1e-10  Score=87.85  Aligned_cols=124  Identities=19%  Similarity=0.315  Sum_probs=89.4

Q ss_pred             cccCCCCCceeEEEEC-CEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           9 QHMPTLHPTSEELSMG-DIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~-~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ..-.|..++.+.+.+. |..+.+-||-|-         ..|++.... ...||++++|+|+++|...+.+ ....+++..
T Consensus       222 ~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~e  299 (411)
T COG2262         222 QLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKL-EAVEDVLAE  299 (411)
T ss_pred             cccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHH-HHHHHHHHH
Confidence            4557888889999987 599999999993         346665555 5589999999999998544443 334445555


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....+|+++|.||+|+.....   ....+..               . .+ ..+.+||++|.|++.+++.|.+.+
T Consensus       300 l~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---------------~-~~-~~v~iSA~~~~gl~~L~~~i~~~l  355 (411)
T COG2262         300 IGADEIPIILVLNKIDLLEDEE---ILAELER---------------G-SP-NPVFISAKTGEGLDLLRERIIELL  355 (411)
T ss_pred             cCCCCCCEEEEEecccccCchh---hhhhhhh---------------c-CC-CeEEEEeccCcCHHHHHHHHHHHh
Confidence            5566799999999999754221   1111111               0 11 579999999999999999988765

>PRK12740 elongation factor G; Reviewed

Probab=99.30  E-value=1.1e-10  Score=94.90  Aligned_cols=83  Identities=16%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...|++.....+.++++.+++|||||+..+...+..+++.+|++++|+|++........ ..+.....    .++|+++|
T Consensus        44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv  118 (668)
T PRK12740         44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIF  118 (668)
T ss_pred             cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEE
Confidence            34566666788889999999999999998888888899999999999999876554433 23333321    36899999


Q ss_pred             EeCCCcCC
Q psy2161          90 GNKIDIFD   97 (155)
Q Consensus        90 ~nK~Dl~~   97 (155)
                      +||+|+..
T Consensus       119 ~NK~D~~~  126 (668)
T PRK12740        119 VNKMDRAG  126 (668)
T ss_pred             EECCCCCC
Confidence            99999865

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.30  E-value=6.6e-11  Score=90.59  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=73.0

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCcC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDIF   96 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl~   96 (155)
                      ...++.++.++.+|||||++.|..........+|++++|+|++..... .....+..+..    .++|. ++++||+|+.
T Consensus        67 ~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485        67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMV  141 (394)
T ss_pred             EEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccC
Confidence            344445668999999999999987777777889999999999863222 22233333321    14565 5789999986


Q ss_pred             CcCC-H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--------ChHHHHHHHHh
Q psy2161          97 DAAS-E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--------GFGNGFRWLAN  152 (155)
Q Consensus        97 ~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~  152 (155)
                      +... .    +++...+...+            .....++++++||++|.        ++.++++.+.+
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~  198 (394)
T TIGR00485       142 DDEELLELVEMEVRELLSEYD------------FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE  198 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHhcC------------CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence            4211 1    12333333211            11124789999999875        24455555543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.28  E-value=1.2e-10  Score=89.32  Aligned_cols=119  Identities=19%  Similarity=0.262  Sum_probs=76.5

Q ss_pred             eEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcCC
Q psy2161          19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIFD   97 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~~   97 (155)
                      ..++.++.++.|+||||++.|.......+..+|++++|+|+..... ......+..+. .   .++|.+ +++||+|+.+
T Consensus        68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~-~---~gi~~iivvvNK~Dl~~  142 (396)
T PRK12735         68 VEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             eEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEEecCCcc
Confidence            3445567899999999999888777777889999999999976322 22223333332 1   256755 6799999864


Q ss_pred             cC-CHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhhc
Q psy2161          98 AA-SED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANYI  154 (155)
Q Consensus        98 ~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i  154 (155)
                      .. ..+    ++...+...+            ....+.+++++||++|.          ++.++++.|...+
T Consensus       143 ~~~~~~~~~~ei~~~l~~~~------------~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        143 DEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHcC------------CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            11 111    2333332211            11125789999999984          5677887776543

>TIGR00503 prfC peptide chain release factor 3

Probab=99.27  E-value=1.6e-10  Score=91.23  Aligned_cols=75  Identities=21%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ...++++++++++|||||+..|......+++.+|++++|+|+++.-. .....++. ....   .++|+++++||+|+..
T Consensus        72 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence            46677889999999999999888877778899999999999976421 22233333 3222   4689999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04169 RF3 RF3 subfamily

Probab=99.27  E-value=5.8e-11  Score=86.40  Aligned_cols=89  Identities=24%  Similarity=0.306  Sum_probs=64.3

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ....++++++++++|||||+..|......+++.+|++++|+|+++.... ....++... .   ..++|+++++||+|+.
T Consensus        62 ~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~  136 (267)
T cd04169          62 SVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDRE  136 (267)
T ss_pred             EEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccC
Confidence            3557888899999999999999888777789999999999999865332 222333322 2   2368999999999986


Q ss_pred             CcCC---HHHHHhhhcc
Q psy2161          97 DAAS---EDEVRHFFGL  110 (155)
Q Consensus        97 ~~~~---~~~i~~~~~~  110 (155)
                      ....   .+++.+.++.
T Consensus       137 ~a~~~~~~~~l~~~l~~  153 (267)
T cd04169         137 GRDPLELLDEIEEELGI  153 (267)
T ss_pred             CCCHHHHHHHHHHHHCC
Confidence            5332   3455555543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1423|consensus

Probab=99.27  E-value=1.2e-10  Score=84.45  Aligned_cols=140  Identities=21%  Similarity=0.207  Sum_probs=81.6

Q ss_pred             cccCCCCCceeEEEECCEEEEEEEcCCChh------h------HHhHHhhcCCCCEEEEEEECCCCCch--HHHHHHHHH
Q psy2161           9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ------A------RRVWRDYFPAVDAIVFIIDASDRSRF--PESKYELDS   74 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~------~------~~~~~~~~~~ad~ii~v~D~~~~~~~--~~~~~~l~~   74 (155)
                      ...+|..-....+..+.+++.|+||||...      +      .....+.+..||.+++|+|++++...  ..+.+.+..
T Consensus       103 K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~  182 (379)
T KOG1423|consen  103 KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE  182 (379)
T ss_pred             cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH
Confidence            344555555666777779999999999421      1      12234557789999999999864332  233344444


Q ss_pred             HHhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccCCCcccc------------cccccC-ccEEEEEeeeccC
Q psy2161          75 LLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTS------------REILQM-RPIELFMCSVLKR  140 (155)
Q Consensus        75 ~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~Sa~~~  140 (155)
                      .      ..+|-++|+||.|.... ...-.....+..-.+...+.+..            .....- ..-.+|.+||++|
T Consensus       183 y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G  256 (379)
T KOG1423|consen  183 Y------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG  256 (379)
T ss_pred             H------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc
Confidence            4      36899999999996431 11111111111111110011100            000111 1224899999999


Q ss_pred             CChHHHHHHHHhhc
Q psy2161         141 QGFGNGFRWLANYI  154 (155)
Q Consensus       141 ~~i~~~~~~l~~~i  154 (155)
                      +||+++.+||..+.
T Consensus       257 ~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  257 EGIKDLKQYLMSQA  270 (379)
T ss_pred             cCHHHHHHHHHhcC
Confidence            99999999998764

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.26  E-value=9.5e-11  Score=90.90  Aligned_cols=117  Identities=13%  Similarity=0.109  Sum_probs=76.1

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---ch---HHHHHHHHHHHhCCCCCCCc-
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDSLLADDALTDVP-   85 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~---~~~~~~l~~~~~~~~~~~~p-   85 (155)
                      |+......++++++.++++||||+..|.......+..+|++++|+|++...   .+   ...+..+... ..   .++| 
T Consensus        72 Tid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~  147 (446)
T PTZ00141         72 TIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQ  147 (446)
T ss_pred             eEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCe
Confidence            333345667778899999999999999988888899999999999997632   01   1122222222 11   2455 


Q ss_pred             EEEEEeCCCcCC----cCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          86 ILILGNKIDIFD----AAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        86 iilv~nK~Dl~~----~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      +++++||+|...    ...    ..++...+...+            +...+++++++||.+|.|+.+
T Consensus       148 iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        148 MIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG------------YNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEEEEccccccchhhHHHHHHHHHHHHHHHHhcC------------CCcccceEEEeecccCCCccc
Confidence            779999999532    111    223333333211            122358899999999999864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.26  E-value=1e-12  Score=89.69  Aligned_cols=108  Identities=23%  Similarity=0.398  Sum_probs=65.4

Q ss_pred             CCCCCCCcccCCCCCceeEEEE---CCEEEEEEEcCCChhhHHhHHh---hcCCCCEEEEEEECCC-CCchHHHHHHHHH
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSM---GDIVFTTHDLGGHVQARRVWRD---YFPAVDAIVFIIDASD-RSRFPESKYELDS   74 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~---~~~~~~~~Dt~G~~~~~~~~~~---~~~~ad~ii~v~D~~~-~~~~~~~~~~l~~   74 (155)
                      |.+|....+.+.+..+ ..+.+   .+..+.++|+||+.+.+.....   +...+.+||||+|++. +....++...|-+
T Consensus        23 L~~~~~~~T~tS~e~n-~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~  101 (181)
T PF09439_consen   23 LVNGKTVPTVTSMENN-IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYD  101 (181)
T ss_dssp             HHHSS---B---SSEE-EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHH
T ss_pred             HhcCCcCCeeccccCC-ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHH
Confidence            3455556666666333 23333   3478999999999987764443   4889999999999974 3445556666666


Q ss_pred             HHhCC--CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161          75 LLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGL  110 (155)
Q Consensus        75 ~~~~~--~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~  110 (155)
                      ++...  ....+|+++++||+|+....+...+...++.
T Consensus       102 iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~  139 (181)
T PF09439_consen  102 ILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEK  139 (181)
T ss_dssp             HHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHH
T ss_pred             HHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHH
Confidence            65332  2357899999999999887777777766654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13768 GTPase; Provisional

Probab=99.26  E-value=3.3e-11  Score=87.10  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             EEEEEEEcCCChhh---HHhHHhhcCC-----CCEEEEEEECCCCCchHHH-H-HHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          26 IVFTTHDLGGHVQA---RRVWRDYFPA-----VDAIVFIIDASDRSRFPES-K-YELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~---~~~~~~~~~~-----ad~ii~v~D~~~~~~~~~~-~-~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      ..+.+||+||+.+.   +..++.+++.     ++++++++|++...+.... . .|+.....  ...++|+++|+||+|+
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~--~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ--LRLGLPQIPVLNKADL  174 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH--HHcCCCEEEEEEhHhh
Confidence            47899999998663   4455444443     8999999999754333222 1 22221111  1136899999999998


Q ss_pred             CCcCCHHHHHhhhcc----------cCccCCCccc-ccccccC--ccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          96 FDAASEDEVRHFFGL----------YGLTTGKEFT-SREILQM--RPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        96 ~~~~~~~~i~~~~~~----------~~~~~~~~~~-~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      .+....+.....+..          .....+.... +...+..  ...+++++||+++.|++++.+++.+.++
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            764333333333321          0000000000 0011111  2247899999999999999999988763

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.25  E-value=6.1e-11  Score=92.62  Aligned_cols=119  Identities=20%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH-HHHHHHhCCCCCCCcEEEEEe
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~-~l~~~~~~~~~~~~piilv~n   91 (155)
                      |+......++.++.++.|+||||+..|.......++.+|++++|+|++....-..... .+...+     ...|+++++|
T Consensus        94 Tid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvN  168 (474)
T PRK05124         94 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVN  168 (474)
T ss_pred             CeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEE
Confidence            3334455667778999999999999887666666899999999999975321111111 111221     1358999999


Q ss_pred             CCCcCCcC--CHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHH
Q psy2161          92 KIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        92 K~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      |+|+.+..  ...++...+...          ..... ....+++++||++|.|+.++
T Consensus       169 KiD~~~~~~~~~~~i~~~l~~~----------~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        169 KMDLVDYSEEVFERIREDYLTF----------AEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             eeccccchhHHHHHHHHHHHHH----------HHhcCCCCCceEEEEEeecCCCcccc
Confidence            99986411  112222222110          00011 13468999999999998764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.24  E-value=2.2e-10  Score=93.32  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.+++.++++|||||+..+...+..+++.+|++++|+|+++....... .++..+.    ..++|+++++||
T Consensus        62 ti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK  136 (689)
T TIGR00484        62 TITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNK  136 (689)
T ss_pred             CEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEEC
Confidence            34344678888999999999999998888899999999999999999875444322 2333332    135899999999


Q ss_pred             CCcCC
Q psy2161          93 IDIFD   97 (155)
Q Consensus        93 ~Dl~~   97 (155)
                      +|+.+
T Consensus       137 ~D~~~  141 (689)
T TIGR00484       137 MDKTG  141 (689)
T ss_pred             CCCCC
Confidence            99875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.23  E-value=3.4e-10  Score=86.10  Aligned_cols=134  Identities=15%  Similarity=0.128  Sum_probs=89.7

Q ss_pred             CCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCChh----------hH-HhHHhhcCCCCEEEEEEECCCCCchH
Q psy2161           2 LKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ----------AR-RVWRDYFPAVDAIVFIIDASDRSRFP   66 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~----------~~-~~~~~~~~~ad~ii~v~D~~~~~~~~   66 (155)
                      |.+++.....|.-|.+    ...+++++.++.++||+|-++          |. ......+..|+++++|+|++.+-+-+
T Consensus       198 ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~q  277 (444)
T COG1160         198 ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQ  277 (444)
T ss_pred             hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHH
Confidence            4556666666666664    567778899999999999543          11 12344577899999999998764433


Q ss_pred             HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          67 ESKYELDSLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        67 ~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      .. .....+.    ..+.++++|.||+|+.+.  ...++....+...            -..-...+++.+||++|.++.
T Consensus       278 D~-~ia~~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~------------l~~l~~a~i~~iSA~~~~~i~  340 (444)
T COG1160         278 DL-RIAGLIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRK------------LPFLDFAPIVFISALTGQGLD  340 (444)
T ss_pred             HH-HHHHHHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHH------------hccccCCeEEEEEecCCCChH
Confidence            32 2333332    236899999999998664  3444443333320            011234578999999999999


Q ss_pred             HHHHHHHh
Q psy2161         145 NGFRWLAN  152 (155)
Q Consensus       145 ~~~~~l~~  152 (155)
                      .+++.+.+
T Consensus       341 ~l~~~i~~  348 (444)
T COG1160         341 KLFEAIKE  348 (444)
T ss_pred             HHHHHHHH
Confidence            99998765

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.23  E-value=1e-10  Score=76.81  Aligned_cols=99  Identities=20%  Similarity=0.319  Sum_probs=70.4

Q ss_pred             EEEEcCCC----hhhHHhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC-CcCCHH
Q psy2161          29 TTHDLGGH----VQARRVWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDALTDVPILILGNKIDIF-DAASED  102 (155)
Q Consensus        29 ~~~Dt~G~----~~~~~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~  102 (155)
                      .++||||.    +.+.........+||+|+++.|++++.+ |...   +...      -++|++-|+||+|+. +....+
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~------f~~pvIGVITK~Dl~~~~~~i~  109 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASM------FNKPVIGVITKIDLPSDDANIE  109 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcc------cCCCEEEEEECccCccchhhHH
Confidence            45999994    4444444555669999999999998643 3221   1111      258999999999998 344556


Q ss_pred             HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ...+.+...              ...  .++++|+.+|+|++++.++|.+
T Consensus       110 ~a~~~L~~a--------------G~~--~if~vS~~~~eGi~eL~~~L~~  143 (143)
T PF10662_consen  110 RAKKWLKNA--------------GVK--EIFEVSAVTGEGIEELKDYLEE  143 (143)
T ss_pred             HHHHHHHHc--------------CCC--CeEEEECCCCcCHHHHHHHHhC
Confidence            666666652              223  4699999999999999999863

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.23  E-value=3.2e-10  Score=82.62  Aligned_cols=93  Identities=19%  Similarity=0.172  Sum_probs=66.7

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.+++.++++|||||+..+...+..+++.+|++++|+|+++...-. ....+....    ..++|+++++||
T Consensus        51 ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK  125 (270)
T cd01886          51 TIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD----RYNVPRIAFVNK  125 (270)
T ss_pred             CeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH----HcCCCEEEEEEC
Confidence            444446788889999999999999999999999999999999999997643222 223333332    236899999999


Q ss_pred             CCcCCcC---CHHHHHhhhcc
Q psy2161          93 IDIFDAA---SEDEVRHFFGL  110 (155)
Q Consensus        93 ~Dl~~~~---~~~~i~~~~~~  110 (155)
                      +|+.+..   ...++.+.++.
T Consensus       126 ~D~~~a~~~~~~~~l~~~l~~  146 (270)
T cd01886         126 MDRTGADFFRVVEQIREKLGA  146 (270)
T ss_pred             CCCCCCCHHHHHHHHHHHhCC
Confidence            9986521   23455555443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01855 YqeH YqeH

Probab=99.21  E-value=9.4e-11  Score=81.19  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccC
Q psy2161          37 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTT  115 (155)
Q Consensus        37 ~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~  115 (155)
                      ..++.++..+++++|++++|+|++++..-     |...+..  ...++|+++|+||+|+... .....+........   
T Consensus        22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---   91 (190)
T cd01855          22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA---   91 (190)
T ss_pred             HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH---
Confidence            33688999999999999999999875421     1112211  1246899999999998642 22222322220000   


Q ss_pred             CCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         116 GKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                            ..........++.+||++|.|++++++++.+.+
T Consensus        92 ------~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          92 ------AAGLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             ------HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence                  000111113589999999999999999998754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.21  E-value=1.7e-10  Score=84.05  Aligned_cols=83  Identities=18%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      .+|+......+.++++++++|||||...+...+..+++.+|++++|+|+++........ .+..+.    ..++|.++++
T Consensus        49 ~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~----~~~~p~iivv  123 (268)
T cd04170          49 KMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFAD----EAGIPRIIFI  123 (268)
T ss_pred             cccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH----HcCCCEEEEE
Confidence            34555567788888999999999999988888889999999999999998765443222 222222    2368999999


Q ss_pred             eCCCcCCc
Q psy2161          91 NKIDIFDA   98 (155)
Q Consensus        91 nK~Dl~~~   98 (155)
                      ||+|+...
T Consensus       124 NK~D~~~~  131 (268)
T cd04170         124 NKMDRERA  131 (268)
T ss_pred             ECCccCCC
Confidence            99998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01859 MJ1464 MJ1464

Probab=99.20  E-value=4.6e-11  Score=80.18  Aligned_cols=93  Identities=18%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcc
Q psy2161          40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF  119 (155)
Q Consensus        40 ~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~  119 (155)
                      +.++++..+++|++++|+|++++..... .. +...+.   ..++|+++|+||+|+.+.............         
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---------   68 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RK-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKES---------   68 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HH-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh---------
Confidence            5678888999999999999987543322 11 222221   135899999999998532111111111111         


Q ss_pred             cccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         120 TSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       120 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                              .+..++.+||++|.|++++++.+.+.+
T Consensus        69 --------~~~~~~~iSa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          69 --------EGIPVVYVSAKERLGTKILRRTIKELA   95 (156)
T ss_pred             --------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence                    234689999999999999999998754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09866 hypothetical protein; Provisional

Probab=99.19  E-value=7.1e-10  Score=88.01  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=74.4

Q ss_pred             EEEEEEEcCCChh-----hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC-
Q psy2161          26 IVFTTHDLGGHVQ-----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA-   99 (155)
Q Consensus        26 ~~~~~~Dt~G~~~-----~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~-   99 (155)
                      .++.|.||||-..     ........+..||+|+||+|++...+...  ..+.+.++... .+.|+++|+||+|+.+.. 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            7899999999633     23455668999999999999987544333  22333332221 135999999999985421 


Q ss_pred             -CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         100 -SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       100 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                       ..+.+.......         + .......-.++++||+.|.|++++++.+..
T Consensus       307 ddkE~Lle~V~~~---------L-~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGT---------L-MKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHH---------H-HhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence             244444443210         0 001112347999999999999999999876

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.18  E-value=3.9e-10  Score=91.11  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=73.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+++++.++.|+||||++.|.......+..+|++++|+|++....-.. ...+..+ ...  ..+|+++++||
T Consensus        91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~-~~~--~~~~iivvvNK  166 (632)
T PRK05506         91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIA-SLL--GIRHVVLAVNK  166 (632)
T ss_pred             CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHH-HHh--CCCeEEEEEEe
Confidence            3334456677788999999999999887777777889999999999975422111 1111111 111  23689999999


Q ss_pred             CCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          93 IDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        93 ~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      +|+.+  ....+++...+...          .........+++++||++|.|+.+
T Consensus       167 ~D~~~~~~~~~~~i~~~i~~~----------~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        167 MDLVDYDQEVFDEIVADYRAF----------AAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cccccchhHHHHHHHHHHHHH----------HHHcCCCCccEEEEecccCCCccc
Confidence            99864  11112222222110          000111345789999999999874

>CHL00071 tufA elongation factor Tu

Probab=99.17  E-value=7.3e-10  Score=85.27  Aligned_cols=108  Identities=21%  Similarity=0.247  Sum_probs=70.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF   96 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~   96 (155)
                      ...++.++.++.+.||||+..|.......+..+|++++|+|++.... ......+..+. .   .++| +++++||+|+.
T Consensus        67 ~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~-~---~g~~~iIvvvNK~D~~  141 (409)
T CHL00071         67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAK-Q---VGVPNIVVFLNKEDQV  141 (409)
T ss_pred             EEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEEEccCCC
Confidence            34555677899999999999888777778889999999999975322 22223333332 1   2567 77899999986


Q ss_pred             CcCC-H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC
Q psy2161          97 DAAS-E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG  142 (155)
Q Consensus        97 ~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  142 (155)
                      +... .    .++...+...+            +.....+++.+||++|.|
T Consensus       142 ~~~~~~~~~~~~l~~~l~~~~------------~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        142 DDEELLELVELEVRELLSKYD------------FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CHHHHHHHHHHHHHHHHHHhC------------CCCCcceEEEcchhhccc
Confidence            4211 1    12333332211            112347899999999874

>PRK00049 elongation factor Tu; Reviewed

Probab=99.16  E-value=1.1e-09  Score=83.95  Aligned_cols=119  Identities=18%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIF   96 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~   96 (155)
                      ...++.++.++.+.||||+..|.......+..+|++++|+|++.... ......+..+. .   .++|.+ +++||+|+.
T Consensus        67 ~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~-~---~g~p~iiVvvNK~D~~  141 (396)
T PRK00049         67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMV  141 (396)
T ss_pred             EEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHH-H---cCCCEEEEEEeecCCc
Confidence            34455567899999999999888777777899999999999976422 22223333332 1   257875 689999986


Q ss_pred             CcC-CH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhh
Q psy2161          97 DAA-SE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANY  153 (155)
Q Consensus        97 ~~~-~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~  153 (155)
                      +.. ..    .++...+...+            +...+.+++.+||++|.          ++..+++.|...
T Consensus       142 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        142 DDEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             chHHHHHHHHHHHHHHHHhcC------------CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            411 11    12333332211            11235789999999875          456777777654

>KOG0099|consensus

Probab=99.14  E-value=2.6e-10  Score=81.26  Aligned_cols=144  Identities=19%  Similarity=0.313  Sum_probs=102.7

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhCCC
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADDA   80 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~~~   80 (155)
                      +-|.|.....+.++.+.|.++|.|||+..+..|-.++.+..+||||+..++          .+.+.+...++..+.+...
T Consensus       187 vlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw  266 (379)
T KOG0099|consen  187 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW  266 (379)
T ss_pred             hhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH
Confidence            346677788888899999999999999999999999999999999997654          3445667788888888888


Q ss_pred             CCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCc---cC----C----------Cccc--cccc---cc---CccEEE
Q psy2161          81 LTDVPILILGNKIDIFD---AASEDEVRHFFGLYGL---TT----G----------KEFT--SREI---LQ---MRPIEL  132 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~---~~----~----------~~~~--~~~~---~~---~~~~~~  132 (155)
                      +..+.+|+.+||.|+..   ......+..++..+.-   +.    .          |...  .+..   .+   .+-+..
T Consensus       267 L~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYp  346 (379)
T KOG0099|consen  267 LRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP  346 (379)
T ss_pred             HhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccc
Confidence            88899999999999864   2234445555543311   10    0          0000  0001   11   123456


Q ss_pred             EEeeeccCCChHHHHHHHHhhc
Q psy2161         133 FMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       133 ~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.++|.+.+||..+|.-+.+.|
T Consensus       347 HFTcAvDTenIrrVFnDcrdiI  368 (379)
T KOG0099|consen  347 HFTCAVDTENIRRVFNDCRDII  368 (379)
T ss_pred             ceeEeechHHHHHHHHHHHHHH
Confidence            7899999999999998766543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.14  E-value=1.4e-09  Score=85.04  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF   96 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~   96 (155)
                      ...++.++.++.++|+||++.|.......+..+|++++|+|+.....- ....++..+. .   .++| +++++||+|+.
T Consensus       136 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~-~---~gi~~iIvvvNK~Dl~  210 (478)
T PLN03126        136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAK-Q---VGVPNMVVFLNKQDQV  210 (478)
T ss_pred             EEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHH-H---cCCCeEEEEEeccccc
Confidence            344566789999999999999988888888899999999999864322 2233333332 1   2567 78899999986


Q ss_pred             CcC-CHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC
Q psy2161          97 DAA-SED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG  142 (155)
Q Consensus        97 ~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  142 (155)
                      +.. ..+    ++...+...+            +.....+++.+||.+|.|
T Consensus       211 ~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        211 DDEELLELVELEVRELLSSYE------------FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CHHHHHHHHHHHHHHHHHhcC------------CCcCcceEEEEEcccccc
Confidence            411 112    2222222211            122467899999998854

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.14  E-value=4.3e-10  Score=79.94  Aligned_cols=131  Identities=13%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             ccCCCCCceeEEEEC-CEEEEEEEcCCChhhHH-----hHHhhcCCCCEEEEEEECCCCCchHH---HHHHHHHHHhCCC
Q psy2161          10 HMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-----VWRDYFPAVDAIVFIIDASDRSRFPE---SKYELDSLLADDA   80 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~-----~~~~~~~~ad~ii~v~D~~~~~~~~~---~~~~l~~~~~~~~   80 (155)
                      ..||..++...+... +..+++||+||+..+..     .....+++++++|||+|+.+.+-.+.   ....+..+.+.  
T Consensus        31 L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--  108 (232)
T PF04670_consen   31 LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--  108 (232)
T ss_dssp             -----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--
T ss_pred             cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--
Confidence            357888887777755 48999999999976533     36778999999999999985443222   23334444332  


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHH----hhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVR----HFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .++..+.++++|+|+.......++.    +.+...          ........+.++.+|..+ ..+-+++..+++.
T Consensus       109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~----------~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~  174 (232)
T PF04670_consen  109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDE----------LEDLGIEDITFFLTSIWD-ESLYEAWSKIVQK  174 (232)
T ss_dssp             STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHH----------HHHTT-TSEEEEEE-TTS-THHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHH----------hhhccccceEEEeccCcC-cHHHHHHHHHHHH
Confidence            2578999999999985422222221    111110          000111248899988887 5888888777654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.13  E-value=1.7e-09  Score=83.99  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=76.9

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGN   91 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~n   91 (155)
                      |+......++.++.++.|.||||+..|..........+|++++|+|++.... ......+..+. .   .++| +++++|
T Consensus       111 Ti~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~-~---~gip~iIvviN  185 (447)
T PLN03127        111 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR-Q---VGVPSLVVFLN  185 (447)
T ss_pred             eeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEE
Confidence            4444455566677899999999999887766667778999999999875422 22222333332 1   2578 578899


Q ss_pred             CCCcCCcC-CHHHHH----hhhcccCccCCCcccccccccCccEEEEEeeec---cCCC-------hHHHHHHHHhhc
Q psy2161          92 KIDIFDAA-SEDEVR----HFFGLYGLTTGKEFTSREILQMRPIELFMCSVL---KRQG-------FGNGFRWLANYI  154 (155)
Q Consensus        92 K~Dl~~~~-~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i  154 (155)
                      |+|+.+.. ..+.+.    +.+...            .+....++++.+||.   +|.|       +.++++.+.+.+
T Consensus       186 KiDlv~~~~~~~~i~~~i~~~l~~~------------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        186 KVDVVDDEELLELVEMELRELLSFY------------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             eeccCCHHHHHHHHHHHHHHHHHHh------------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            99986411 111121    222110            011234678888775   5555       678888877654

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.13  E-value=1.3e-09  Score=79.88  Aligned_cols=125  Identities=19%  Similarity=0.135  Sum_probs=86.6

Q ss_pred             CCccc-CCCCCceeEEEECCEEEEEEEcCCChh----------hHH-hHHhhcCCCCEEEEEEECCCC--CchHHHHHHH
Q psy2161           7 TAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARR-VWRDYFPAVDAIVFIIDASDR--SRFPESKYEL   72 (155)
Q Consensus         7 ~~~~~-pT~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~-~~~~~~~~ad~ii~v~D~~~~--~~~~~~~~~l   72 (155)
                      +.+|. +|.++++..+++++.++|++||||--.          -++ ..-.++  +++|+|++|+|..  -+.+....++
T Consensus       195 vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~  272 (346)
T COG1084         195 VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLL  272 (346)
T ss_pred             cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHH
Confidence            44454 788889999999999999999999311          011 112222  6799999999754  4456667888


Q ss_pred             HHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          73 DSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        73 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      .++....   ..|+++|+||+|..+....+++...+...                .......+++..+.+++.+.+.+..
T Consensus       273 ~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~d~~~~~v~~  333 (346)
T COG1084         273 EEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEE----------------GGEEPLKISATKGCGLDKLREEVRK  333 (346)
T ss_pred             HHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhh----------------ccccccceeeeehhhHHHHHHHHHH
Confidence            8886433   38999999999987655555555544331                2234678888889988877665543

>PRK12739 elongation factor G; Reviewed

Probab=99.12  E-value=3.2e-09  Score=86.62  Aligned_cols=81  Identities=17%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      -|+......+.+++.+++++||||+..+...+...++.+|++++|+|++....-.. ...+.....    .++|+++++|
T Consensus        59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iN  133 (691)
T PRK12739         59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVN  133 (691)
T ss_pred             CCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEE
Confidence            34444567788899999999999999998889999999999999999976533222 223333321    3589999999


Q ss_pred             CCCcCC
Q psy2161          92 KIDIFD   97 (155)
Q Consensus        92 K~Dl~~   97 (155)
                      |+|+.+
T Consensus       134 K~D~~~  139 (691)
T PRK12739        134 KMDRIG  139 (691)
T ss_pred             CCCCCC
Confidence            999875

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=3.1e-10  Score=85.27  Aligned_cols=118  Identities=17%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---ch-----HHHHHHHHHHHhCCCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF-----PESKYELDSLLADDALTDV   84 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~-----~~~~~~l~~~~~~~~~~~~   84 (155)
                      |+......++.+.+.|++.|+||++.|...+-.-+.+||+.|+|+|+++.+   .|     ..-...+...+     .-.
T Consensus        72 Ti~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~  146 (428)
T COG5256          72 TIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIK  146 (428)
T ss_pred             EEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCc
Confidence            444556777778899999999999999998888899999999999997642   11     11122333332     345


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCccccccc--ccCccEEEEEeeeccCCChHH
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREI--LQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      .++++.||+|+.+  +.-.+++.+.+..          ++..  +...+..+++|||..|.|+.+
T Consensus       147 ~lIVavNKMD~v~wde~rf~ei~~~v~~----------l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         147 QLIVAVNKMDLVSWDEERFEEIVSEVSK----------LLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             eEEEEEEcccccccCHHHHHHHHHHHHH----------HHHHcCCCccCCeEEecccccCCcccc
Confidence            7999999999875  2122233332221          0111  233468899999999999753

>KOG1707|consensus

Probab=99.08  E-value=1.6e-10  Score=89.77  Aligned_cols=134  Identities=15%  Similarity=0.191  Sum_probs=95.0

Q ss_pred             CCCCcccCCCCCc---eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCC-
Q psy2161           5 DRTAQHMPTLHPT---SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADD-   79 (155)
Q Consensus         5 ~~~~~~~pT~~~~---~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~-   79 (155)
                      +++.+.+|-.-..   ...+.-.++...+.|++....-+....+-++.||++.++|+.+++.+++.+ ..|+..+.+.. 
T Consensus        32 eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~  111 (625)
T KOG1707|consen   32 EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFG  111 (625)
T ss_pred             hhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccC
Confidence            4445555554442   233333457799999998777677777889999999999999999999888 58999886433 


Q ss_pred             CCCCCcEEEEEeCCCcCCcCCH--HH-HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          80 ALTDVPILILGNKIDIFDAASE--DE-VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~~~~--~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ...+.|+|||+||.|+.+..+.  +. +.-.+..+               ..--.+++|||++-.|+.|+|.+..+.
T Consensus       112 ~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---------------~EiEtciecSA~~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  112 DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---------------AEIETCIECSALTLANVSELFYYAQKA  173 (625)
T ss_pred             CCccCCEEEEeeccCCccccccchhHHHHHHHHHh---------------HHHHHHHhhhhhhhhhhHhhhhhhhhe
Confidence            2257899999999998763322  22 22222211               112258999999999999999987764

>PRK12289 GTPase RsgA; Reviewed

Probab=99.06  E-value=8.9e-10  Score=82.93  Aligned_cols=90  Identities=16%  Similarity=0.097  Sum_probs=62.7

Q ss_pred             hHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccc
Q psy2161          42 VWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT  120 (155)
Q Consensus        42 ~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  120 (155)
                      +.+..++++|.+++|+|+.++. ....+..|+....    ..++|+++|+||+|+.+......+...+..          
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~----------  147 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQ----------  147 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHh----------
Confidence            3445588999999999998765 3344556665552    246899999999998532111222222222          


Q ss_pred             ccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         121 SREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       121 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                             .++.++.+||++|.|++++++++..
T Consensus       148 -------~g~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        148 -------WGYQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             -------cCCeEEEEEcCCCCCHHHHhhhhcc
Confidence                   3457899999999999999998865

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.04  E-value=6.8e-10  Score=82.03  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH--HHHHHHHHhCCCCCCCcEEEE
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES--KYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~--~~~l~~~~~~~~~~~~piilv   89 (155)
                      -|+.+..+.+...+.+|.+.||||++.|...+-.-...||+.|+++|+... -++..  +..+..++     .-..+++.
T Consensus        72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLL-----GIrhvvvA  145 (431)
T COG2895          72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLL-----GIRHVVVA  145 (431)
T ss_pred             ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHh-----CCcEEEEE
Confidence            456666777777889999999999999999888889999999999999531 11111  23333333     34689999


Q ss_pred             EeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          90 GNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        90 ~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      .||+||.+  +...++|...+..+          ...+......++++||..|+|+-
T Consensus       146 VNKmDLvdy~e~~F~~I~~dy~~f----------a~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         146 VNKMDLVDYSEEVFEAIVADYLAF----------AAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             EeeecccccCHHHHHHHHHHHHHH----------HHHcCCCcceEEechhccCCccc
Confidence            99999976  32333333322211          12244455689999999999964

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.02  E-value=2e-09  Score=79.25  Aligned_cols=127  Identities=21%  Similarity=0.292  Sum_probs=79.2

Q ss_pred             CCCCCceeEEEE-CCEEEEEEEcCCChh----hHHhHHhh---cCCCCEEEEEEECCCCCc---hHHHHHHHHHHHhC-C
Q psy2161          12 PTLHPTSEELSM-GDIVFTTHDLGGHVQ----ARRVWRDY---FPAVDAIVFIIDASDRSR---FPESKYELDSLLAD-D   79 (155)
Q Consensus        12 pT~~~~~~~~~~-~~~~~~~~Dt~G~~~----~~~~~~~~---~~~ad~ii~v~D~~~~~~---~~~~~~~l~~~~~~-~   79 (155)
                      +|+-++...+.+ .+..|.+.|.||--.    -..+...|   +..+.++++|+|++..+.   .+.......++.++ .
T Consensus       192 TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~  271 (369)
T COG0536         192 TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP  271 (369)
T ss_pred             ccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH
Confidence            444445444444 457899999998532    12222222   558999999999986443   45555555555443 3


Q ss_pred             CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEE-EeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELF-MCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.++|.++|+||+|+.. ....+...+.+...                ..+... .+||.++.|++++...+.+.+
T Consensus       272 ~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~----------------~~~~~~~~ISa~t~~g~~~L~~~~~~~l  332 (369)
T COG0536         272 KLAEKPRIVVLNKIDLPLDEEELEELKKALAEA----------------LGWEVFYLISALTREGLDELLRALAELL  332 (369)
T ss_pred             HhccCceEEEEeccCCCcCHHHHHHHHHHHHHh----------------cCCCcceeeehhcccCHHHHHHHHHHHH
Confidence            556899999999999643 22333333333321                122222 299999999999998887654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.00  E-value=1.5e-08  Score=75.40  Aligned_cols=55  Identities=20%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH-HHHhhcC
Q psy2161          83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR-WLANYID  155 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~-~l~~~i~  155 (155)
                      .+|+++|+||.|+.+   .++....+..               ......++.+||+.+.+++++.+ .+.+++|
T Consensus       214 ~KPvI~VlNK~Dl~~---~~~~~~~l~~---------------~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         214 SKPMVIAANKADIPD---AENNISKLRL---------------KYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             CCcEEEEEEHHHccC---hHHHHHHHHh---------------hCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            579999999999743   2222222211               11235789999999999999997 6887764

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00007 elongation factor G; Reviewed

Probab=98.98  E-value=3.1e-08  Score=80.95  Aligned_cols=80  Identities=19%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.+++.++++.||||+..|.......++.+|++++|+|+...-.-.. ...+.....    .++|.++++||
T Consensus        62 ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK  136 (693)
T PRK00007         62 TITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNK  136 (693)
T ss_pred             CEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEEC
Confidence            3334467788889999999999999887777888899999999999875433322 222333322    25799999999


Q ss_pred             CCcCC
Q psy2161          93 IDIFD   97 (155)
Q Consensus        93 ~Dl~~   97 (155)
                      +|+.+
T Consensus       137 ~D~~~  141 (693)
T PRK00007        137 MDRTG  141 (693)
T ss_pred             CCCCC
Confidence            99875

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.97  E-value=5.9e-09  Score=79.65  Aligned_cols=126  Identities=18%  Similarity=0.265  Sum_probs=89.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ...+.|+++++++.||||+-.|-.-....++=+|++++++|+... .+...+-.+.+.+..    +.+-|+|.||+|.++
T Consensus        60 nTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~  134 (603)
T COG1217          60 NTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPD  134 (603)
T ss_pred             cceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCC
Confidence            567888999999999999999988888889999999999999762 233334445555432    466778899999988


Q ss_pred             cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhhcC
Q psy2161          98 AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANYID  155 (155)
Q Consensus        98 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~  155 (155)
                      .-+..-+.+.+.++-       .+...-....++++..|+..|.          +...+|+.+.+.+|
T Consensus       135 Arp~~Vvd~vfDLf~-------~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         135 ARPDEVVDEVFDLFV-------ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             CCHHHHHHHHHHHHH-------HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            666555555554420       0001112256789999998874          47788888887664

>cd01858 NGP_1 NGP-1

Probab=98.96  E-value=5.4e-09  Score=70.26  Aligned_cols=89  Identities=16%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc
Q psy2161          46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL  125 (155)
Q Consensus        46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  125 (155)
                      .+++||++++|+|++++....  ...+.+.+... ..++|+++|+||+|+.+   ..++...+..+             .
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~---~~~~~~~~~~~-------------~   65 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVP---TWVTARWVKIL-------------S   65 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCC---HHHHHHHHHHH-------------h
Confidence            367899999999998763221  12233333321 23589999999999853   22222222221             0


Q ss_pred             cCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         126 QMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .......+.+||+.+.|++++++++.+.
T Consensus        66 ~~~~~~~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          66 KEYPTIAFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             cCCcEEEEEeeccccccHHHHHHHHHHH
Confidence            0122346889999999999999998754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.94  E-value=4.7e-09  Score=77.24  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             HHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccc
Q psy2161          43 WRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS  121 (155)
Q Consensus        43 ~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  121 (155)
                      .+..++++|.+++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+.  .. .......           
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~--~~-~~~~~~~-----------  133 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD--EE-EELELVE-----------  133 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh--HH-HHHHHHH-----------
Confidence            344588999999999999887 77777777776642    36899999999998643  11 1111111           


Q ss_pred             cccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       122 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                         +...+..++.+||+++.|+++++.++..
T Consensus       134 ---~~~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         134 ---ALALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             ---HHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence               1113457899999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01856 YlqF YlqF

Probab=98.94  E-value=4.2e-09  Score=71.79  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=62.5

Q ss_pred             cCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161          33 LGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY  111 (155)
Q Consensus        33 t~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~  111 (155)
                      .||+.. ........+++||++++|+|++.+..... ..++...      .++|+++|+||+|+.+........+.+.. 
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFES-   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence            356543 34455677889999999999987643321 1122211      35799999999998532111111122221 


Q ss_pred             CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                                      ....++.+||+++.|++++.+.+...+
T Consensus        74 ----------------~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          74 ----------------KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ----------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence                            123578999999999999999887653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.94  E-value=6.2e-09  Score=78.34  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccccc
Q psy2161          47 FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQ  126 (155)
Q Consensus        47 ~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  126 (155)
                      ..++|.+++|++.+...++..+..|+....    ..++|.++|+||+|+.+......+......              +.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--------------y~  179 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--------------YR  179 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--------------HH
Confidence            467999999999887788888888876542    246899999999999653222222222221              12


Q ss_pred             CccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         127 MRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..++.++.+||+++.|++++++++...
T Consensus       180 ~~g~~v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        180 NIGYRVLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence            234689999999999999999998753

>PRK00098 GTPase RsgA; Reviewed

Probab=98.91  E-value=5.6e-09  Score=77.23  Aligned_cols=86  Identities=22%  Similarity=0.237  Sum_probs=60.0

Q ss_pred             cCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc
Q psy2161          47 FPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL  125 (155)
Q Consensus        47 ~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  125 (155)
                      .+++|++++|+|++++..+... ..|+..+..    .++|+++|+||+|+.+.  ..........              +
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~~--------------~  137 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLAL--------------Y  137 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHHH--------------H
Confidence            5899999999999887665443 566665532    36899999999998531  1222111111              1


Q ss_pred             cCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         126 QMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ...++.++.+||+++.|++++++++..
T Consensus       138 ~~~g~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        138 RAIGYDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             HHCCCeEEEEeCCCCccHHHHHhhccC
Confidence            112457899999999999999998754

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.91  E-value=4.6e-09  Score=79.60  Aligned_cols=100  Identities=17%  Similarity=0.281  Sum_probs=66.2

Q ss_pred             ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCcc
Q psy2161          36 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLT  114 (155)
Q Consensus        36 ~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~  114 (155)
                      ++.|..+...+++.++++++|+|+.+....     |..++.+..  .++|+++|+||+|+.. ....+.+..++...   
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s-----~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~---  119 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS-----LIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR---  119 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC-----ccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH---
Confidence            567888999999999999999999764321     223332221  2679999999999864 33444444332210   


Q ss_pred             CCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         115 TGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                             ..........++.+||++|.|++++++.+.+
T Consensus       120 -------~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       120 -------AKELGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             -------HHHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence                   0001111125889999999999999999865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.4e-08  Score=74.47  Aligned_cols=113  Identities=17%  Similarity=0.181  Sum_probs=81.5

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC----cCCH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD----AASE  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~----~~~~  101 (155)
                      .++.|.|.||++-....+..-..=.|+.++|++++.+-.-...+.-|..+ ...  .-+.++++-||+|+..    ....
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y  162 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENY  162 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHH
Confidence            68999999999977776665566678999999998643333333333222 111  2467999999999865    2345


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +++.++...              --..+-+++++||..+.||+-+++++.+.|+
T Consensus       163 ~qIk~FvkG--------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         163 EQIKEFVKG--------------TVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHHHHhcc--------------cccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            566666554              2234568999999999999999999998875

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.89  E-value=3.1e-08  Score=72.68  Aligned_cols=57  Identities=23%  Similarity=0.280  Sum_probs=42.3

Q ss_pred             CCccc-CCCCCceeEEEECCEEEEEEEcCCChhh----H---HhHHhhcCCCCEEEEEEECCCCC
Q psy2161           7 TAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQA----R---RVWRDYFPAVDAIVFIIDASDRS   63 (155)
Q Consensus         7 ~~~~~-pT~~~~~~~~~~~~~~~~~~Dt~G~~~~----~---~~~~~~~~~ad~ii~v~D~~~~~   63 (155)
                      ..+|. +|..+....++|+|.++|+.|+||--..    +   ...-...++||.+++|+|+..+.
T Consensus        90 va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~  154 (365)
T COG1163          90 VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP  154 (365)
T ss_pred             ccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence            44555 6777778899999999999999974322    1   12345678999999999997543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.86  E-value=3.5e-08  Score=78.51  Aligned_cols=109  Identities=20%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      ....+.+++.++++.|.||.-+..      ...++|+.  +.|+++-|+|+++.++--.   .--+++.    -+.|+++
T Consensus        41 keg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLy---ltlQLlE----~g~p~il  113 (653)
T COG0370          41 KEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLY---LTLQLLE----LGIPMIL  113 (653)
T ss_pred             EEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHH---HHHHHHH----cCCCeEE
Confidence            366777788999999999964422      23444444  5799999999987543322   2222321    1689999


Q ss_pred             EEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          89 LGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        89 v~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ++|++|...    .++.+.+.+.++.                    +++++||++|.|++++++.+.+
T Consensus       114 aLNm~D~A~~~Gi~ID~~~L~~~LGv--------------------PVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370         114 ALNMIDEAKKRGIRIDIEKLSKLLGV--------------------PVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             EeccHhhHHhcCCcccHHHHHHHhCC--------------------CEEEEEeecCCCHHHHHHHHHH
Confidence            999999754    4566666666654                    8999999999999999998865

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.85  E-value=1.7e-08  Score=73.92  Aligned_cols=96  Identities=23%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             CCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccC
Q psy2161          34 GGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG  112 (155)
Q Consensus        34 ~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~  112 (155)
                      ||+.. ........++.||++++|+|+..+.+...  ..+.+.+     .++|+++|+||+|+.+........+.+..  
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~--   75 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE--   75 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence            67653 33445667889999999999987644322  2233333     25799999999998532111222222211  


Q ss_pred             ccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         113 LTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                                     .+..++.+||+++.|++++.+.+.+.
T Consensus        76 ---------------~~~~vi~iSa~~~~gi~~L~~~i~~~  101 (276)
T TIGR03596        76 ---------------KGIKALAINAKKGKGVKKIIKAAKKL  101 (276)
T ss_pred             ---------------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence                           12367899999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0458|consensus

Probab=98.82  E-value=7.6e-09  Score=80.68  Aligned_cols=120  Identities=18%  Similarity=0.170  Sum_probs=79.0

Q ss_pred             CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHH--HHHHHHHHHhCCCCCCCcEEE
Q psy2161          14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPE--SKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~--~~~~l~~~~~~~~~~~~piil   88 (155)
                      +.+....++.+...+++.|+||+..|.+.+..-...||+.++|+|++..   ..|+.  ..+....+++..  .-..+++
T Consensus       243 m~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qliv  320 (603)
T KOG0458|consen  243 MDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIV  320 (603)
T ss_pred             EEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEE
Confidence            3334566666779999999999999999988889999999999999741   12211  112233343333  3567999


Q ss_pred             EEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccc--cccCccEEEEEeeeccCCChH
Q psy2161          89 LGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSRE--ILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        89 v~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      ++||+|+.+  +.--++|...+..+         +..  .+...++.|++||+.+|+|+-
T Consensus       321 aiNKmD~V~Wsq~RF~eIk~~l~~f---------L~~~~gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  321 AINKMDLVSWSQDRFEEIKNKLSSF---------LKESCGFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             EeecccccCccHHHHHHHHHHHHHH---------HHHhcCcccCCcceEecccccCCccc
Confidence            999999865  22223333333221         101  133456789999999999964

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.75  E-value=3.8e-08  Score=72.48  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=63.4

Q ss_pred             cCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161          33 LGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY  111 (155)
Q Consensus        33 t~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~  111 (155)
                      .||+.. ........++.||++++|+|+..+.+...  .++.+.+     .++|+++|+||+|+.+.........++.. 
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~-   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE-   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence            477653 23345566889999999999987644332  2334443     15899999999998532111222222221 


Q ss_pred             CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                                      .+..++.+||+++.|++++++.+.+.
T Consensus        79 ----------------~~~~vi~vSa~~~~gi~~L~~~l~~~  104 (287)
T PRK09563         79 ----------------QGIKALAINAKKGQGVKKILKAAKKL  104 (287)
T ss_pred             ----------------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence                            12467899999999999998887654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.75  E-value=4.5e-08  Score=64.66  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=47.7

Q ss_pred             hhcCCCCEEEEEEECCCCCchH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccc
Q psy2161          45 DYFPAVDAIVFIIDASDRSRFP--ESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSR  122 (155)
Q Consensus        45 ~~~~~ad~ii~v~D~~~~~~~~--~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  122 (155)
                      ..++.||++++|+|++++.+..  .+..++...    . .++|+++|+||+|+.+........+.++.            
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~------------   69 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYFKK------------   69 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHHHh------------
Confidence            4478999999999998875543  223333222    1 46899999999998542222222233322            


Q ss_pred             ccccCccEEEEEeeeccCCC
Q psy2161         123 EILQMRPIELFMCSVLKRQG  142 (155)
Q Consensus       123 ~~~~~~~~~~~~~Sa~~~~~  142 (155)
                           ....++.+||+++.+
T Consensus        70 -----~~~~ii~iSa~~~~~   84 (141)
T cd01857          70 -----EGIVVVFFSALKENA   84 (141)
T ss_pred             -----cCCeEEEEEecCCCc
Confidence                 224678889988764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.73  E-value=9.2e-08  Score=78.50  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             CCCCCceeE----EEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161          12 PTLHPTSEE----LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus        12 pT~~~~~~~----~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      +|+......    ++.+++++++|||||+..|.......++.+|++++|+|+........ ...+....+    .+.|++
T Consensus        68 ~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~i  142 (720)
T TIGR00490        68 ITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPV  142 (720)
T ss_pred             chhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEE
Confidence            455543222    45567999999999999988888889999999999999976422222 122222221    256888


Q ss_pred             EEEeCCCcCC
Q psy2161          88 ILGNKIDIFD   97 (155)
Q Consensus        88 lv~nK~Dl~~   97 (155)
                      +++||+|...
T Consensus       143 vviNKiD~~~  152 (720)
T TIGR00490       143 LFINKVDRLI  152 (720)
T ss_pred             EEEEChhccc
Confidence            9999999753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.72  E-value=9.1e-08  Score=64.16  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             CEEEEEEECCCCCchHHHHHHHH-HHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCcc
Q psy2161          51 DAIVFIIDASDRSRFPESKYELD-SLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRP  129 (155)
Q Consensus        51 d~ii~v~D~~~~~~~~~~~~~l~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  129 (155)
                      |++++|+|++++.+...  .++. ..+.   ..++|+++|+||+|+.+   ..++...+..+             .....
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~---~~~~~~~~~~~-------------~~~~~   59 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVP---KEVLRKWLAYL-------------RHSYP   59 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCC---HHHHHHHHHHH-------------HhhCC
Confidence            78999999988755532  2333 2222   23689999999999853   22222221110             00013


Q ss_pred             EEEEEeeeccCCChHHHHHHHHh
Q psy2161         130 IELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       130 ~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..++.+||++|.|++++++.+.+
T Consensus        60 ~~ii~vSa~~~~gi~~L~~~i~~   82 (155)
T cd01849          60 TIPFKISATNGQGIEKKESAFTK   82 (155)
T ss_pred             ceEEEEeccCCcChhhHHHHHHH
Confidence            46889999999999999998764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1144|consensus

Probab=98.71  E-value=9.2e-08  Score=76.76  Aligned_cols=119  Identities=13%  Similarity=0.152  Sum_probs=75.5

Q ss_pred             EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC---cCC
Q psy2161          27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFD---AAS  100 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~---~~~  100 (155)
                      -+-++||||+++|..+......-||.+|+|+|+..   +++++.+    . +++   ..+.|+++.+||+|..-   ..+
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~-lLR---~rktpFivALNKiDRLYgwk~~p  612 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----N-LLR---MRKTPFIVALNKIDRLYGWKSCP  612 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----H-HHH---hcCCCeEEeehhhhhhcccccCC
Confidence            47889999999999999999999999999999964   4444432    2 222   23689999999999542   122


Q ss_pred             HHHHHhhhcccCc----------------cCCCcccccccc----cCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         101 EDEVRHFFGLYGL----------------TTGKEFTSREIL----QMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       101 ~~~i~~~~~~~~~----------------~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ...+...+..+.-                .+.++--....+    ....+.++++||.+|+||-+++-||++.
T Consensus       613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l  685 (1064)
T KOG1144|consen  613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL  685 (1064)
T ss_pred             CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence            2222221111000                000000000111    1134678999999999999999988763

>KOG1191|consensus

Probab=98.71  E-value=1.4e-07  Score=72.52  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             CCCCCcccCCCCC----ceeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEEC--CCCCchHHH
Q psy2161           4 NDRTAQHMPTLHP----TSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDA--SDRSRFPES   68 (155)
Q Consensus         4 ~~~~~~~~pT~~~----~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~--~~~~~~~~~   68 (155)
                      ++++...-|--|.    -...++++|+++.+.||+|-++         ........+..||++++|+|+  +..++-..+
T Consensus       290 ~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i  369 (531)
T KOG1191|consen  290 REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKI  369 (531)
T ss_pred             cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHH
Confidence            3444434444444    4788899999999999999655         112345567799999999999  333333333


Q ss_pred             HHHHHHHHh-----CCCCCCCcEEEEEeCCCcCCcCC---HHHHHhhhcccCccCCCcccccccccCccEEE-EEeeecc
Q psy2161          69 KYELDSLLA-----DDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTSREILQMRPIEL-FMCSVLK  139 (155)
Q Consensus        69 ~~~l~~~~~-----~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~  139 (155)
                      ...+.....     .+.....|++++.||.|+....+   ...+. +.+.              .....+++ .++|+++
T Consensus       370 ~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~--------------~~~~~~~i~~~vs~~t  434 (531)
T KOG1191|consen  370 ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSA--------------EGRSVFPIVVEVSCTT  434 (531)
T ss_pred             HHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-cccc--------------ccCcccceEEEeeech
Confidence            334443321     11223479999999999865311   11100 1110              01123444 4599999


Q ss_pred             CCChHHHHHHHHhhc
Q psy2161         140 RQGFGNGFRWLANYI  154 (155)
Q Consensus       140 ~~~i~~~~~~l~~~i  154 (155)
                      ++|++++.+.+.+.+
T Consensus       435 keg~~~L~~all~~~  449 (531)
T KOG1191|consen  435 KEGCERLSTALLNIV  449 (531)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999998887653

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.69  E-value=1.4e-06  Score=60.19  Aligned_cols=127  Identities=17%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             CcccCCCCCc--eeEEEECCEEEEEEEcCC----------ChhhHHhHHhhcCC---CCEEEEEEECCCCCchHHHHHHH
Q psy2161           8 AQHMPTLHPT--SEELSMGDIVFTTHDLGG----------HVQARRVWRDYFPA---VDAIVFIIDASDRSRFPESKYEL   72 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G----------~~~~~~~~~~~~~~---ad~ii~v~D~~~~~~~~~~~~~l   72 (155)
                      .-+.-|-|.+  ..-+++++. +.+.|.||          ++....+..+|++.   -.++++++|+..+..-.+  ..+
T Consensus        51 ArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D--~em  127 (200)
T COG0218          51 ARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD--REM  127 (200)
T ss_pred             eecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH--HHH
Confidence            4455666765  344455443 88999999          23445556667764   458888899976433322  122


Q ss_pred             HHHHhCCCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161          73 DSLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        73 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  148 (155)
                      -+.+..   .++|+++++||+|.......    ..+.+.+...             .....+ ++..|+.++.|++++..
T Consensus       128 ~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~-------------~~~~~~-~~~~ss~~k~Gi~~l~~  190 (200)
T COG0218         128 IEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP-------------PPDDQW-VVLFSSLKKKGIDELKA  190 (200)
T ss_pred             HHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC-------------CCccce-EEEEecccccCHHHHHH
Confidence            222222   37999999999997652212    3344344331             111122 88899999999999998


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      .|.+.+
T Consensus       191 ~i~~~~  196 (200)
T COG0218         191 KILEWL  196 (200)
T ss_pred             HHHHHh
Confidence            887653

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=2.1e-07  Score=70.75  Aligned_cols=121  Identities=16%  Similarity=0.109  Sum_probs=81.9

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      |+.........++..+.|.|.||++.+...+-..+...|..++|+|.++.   ++-+.+  ..-+     .+.....++|
T Consensus        37 TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL--~iLd-----llgi~~giiv  109 (447)
T COG3276          37 TIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL--LILD-----LLGIKNGIIV  109 (447)
T ss_pred             eEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH--HHHH-----hcCCCceEEE
Confidence            33334555666678999999999999998888888999999999999642   222221  1111     2234567999


Q ss_pred             EeCCCcCCcCCHH-HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          90 GNKIDIFDAASED-EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        90 ~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +||+|..+..-.+ .+.+.+..              ..-.+.+++.+|+++|.||+++...|.+..
T Consensus       110 ltk~D~~d~~r~e~~i~~Il~~--------------l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         110 LTKADRVDEARIEQKIKQILAD--------------LSLANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             EeccccccHHHHHHHHHHHHhh--------------cccccccccccccccCCCHHHHHHHHHHhh
Confidence            9999987532111 12222211              112345679999999999999999988754

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.65  E-value=5.6e-07  Score=74.08  Aligned_cols=68  Identities=22%  Similarity=0.259  Sum_probs=50.7

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ++++++++||||+..|.......++.+|++++|+|+...-... ....+....+.    +.|.++++||+|+.
T Consensus        85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~  152 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRL  152 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhh
Confidence            3689999999999999888888899999999999987642222 22223332221    46789999999975

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=3.5e-07  Score=66.52  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCC-cEEEE
Q psy2161          14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDV-PILIL   89 (155)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~-piilv   89 (155)
                      +......++..+.++-..|+||+..|...+..-..+.|+.|+|+.+++   |++-+.+  ++...      -++ .++++
T Consensus        63 Intahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarq------vGvp~ivvf  134 (394)
T COG0050          63 INTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQ------VGVPYIVVF  134 (394)
T ss_pred             eccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhh------cCCcEEEEE
Confidence            333355566678999999999999998888877889999999999887   3333321  12221      244 57788


Q ss_pred             EeCCCcCC-----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--------ChHHHHHHHHhhcC
Q psy2161          90 GNKIDIFD-----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--------GFGNGFRWLANYID  155 (155)
Q Consensus        90 ~nK~Dl~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~i~  155 (155)
                      +||+|+.+     .....++.+.+..+++            .....+++.-||+..-        .|.++++.+-.+++
T Consensus       135 lnK~Dmvdd~ellelVemEvreLLs~y~f------------~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         135 LNKVDMVDDEELLELVEMEVRELLSEYGF------------PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             EecccccCcHHHHHHHHHHHHHHHHHcCC------------CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence            89999975     2334566666666432            2235667777766422        26777777766654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.62  E-value=2.5e-07  Score=64.47  Aligned_cols=116  Identities=14%  Similarity=0.058  Sum_probs=65.4

Q ss_pred             EEEEEEEcCCChhhHH-----hHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCCc-
Q psy2161          26 IVFTTHDLGGHVQARR-----VWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFDA-   98 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~-----~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~~-   98 (155)
                      ..+.+|||||......     +....+.++|+++++.|.    ++.... .++..+. ..   ++|+++|+||+|+... 
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~-~~---~~~~ilV~nK~D~~~~~  123 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQ-CM---GKKFYFVRTKVDRDLSN  123 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHH-Hh---CCCEEEEEecccchhhh
Confidence            4799999999643211     122236789999998532    343333 4444443 22   5899999999998421 


Q ss_pred             C--------CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec--cCCChHHHHHHHHhhcC
Q psy2161          99 A--------SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL--KRQGFGNGFRWLANYID  155 (155)
Q Consensus        99 ~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l~~~i~  155 (155)
                      .        ..+++.+.+...-      ...........-.++.+|+.  .+.|+..+.+.+...|+
T Consensus       124 ~~~~~~~~~~~~~~l~~i~~~~------~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~  184 (197)
T cd04104         124 EQRSKPRSFNREQVLQEIRDNC------LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP  184 (197)
T ss_pred             hhccccccccHHHHHHHHHHHH------HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence            0        0122222111100      00000011123468899998  67899999998887664

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.59  E-value=1.1e-07  Score=68.25  Aligned_cols=125  Identities=17%  Similarity=0.046  Sum_probs=58.2

Q ss_pred             EEEEEEcCCChhhHHhHHhhc--------CCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          27 VFTTHDLGGHVQARRVWRDYF--------PAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~~~~~~~~--------~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      .+.++|||||.++...|....        ...-++++++|+....+.... ..++.... ....-+.|.+.|+||+|+.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s-~~~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLS-IMLRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHH-HHHHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHH-HHhhCCCCEEEeeeccCccc
Confidence            689999999988655444333        456699999998654332211 12221111 00112689999999999975


Q ss_pred             cCCHHHHHhhhccc-Ccc------CCCccccccc-ccC--ccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          98 AASEDEVRHFFGLY-GLT------TGKEFTSREI-LQM--RPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        98 ~~~~~~i~~~~~~~-~~~------~~~~~~~~~~-~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .. .+...+.+... .+.      ..+....+.+ +..  ....++.+|+++++|+++++..+-+.
T Consensus       171 ~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  171 KY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             ch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            22 22111111100 000      0000001111 111  22379999999999999999988654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1490|consensus

Probab=98.55  E-value=1.7e-07  Score=72.34  Aligned_cols=122  Identities=13%  Similarity=0.093  Sum_probs=80.9

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChh----------hHHh-HHhhcCCCCEEEEEEECCC--CCchHHHHHHHHHHHhC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRV-WRDYFPAVDAIVFIIDASD--RSRFPESKYELDSLLAD   78 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~-~~~~~~~ad~ii~v~D~~~--~~~~~~~~~~l~~~~~~   78 (155)
                      +|.+..+..++++-.++++.||||.-.          ..+. .-.-+  -.+++|++|+|.  ..+..+...++..+.  
T Consensus       201 TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIK--  276 (620)
T KOG1490|consen  201 TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIK--  276 (620)
T ss_pred             ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhH--
Confidence            444455666666668999999999421          1110 00112  237899999975  456666667777775  


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          79 DALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..+.++|+|+|+||+|+....+..    ++.+.+..                ..++.++.+|..+.+|+.++....++.
T Consensus       277 pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~----------------~~~v~v~~tS~~~eegVm~Vrt~ACe~  339 (620)
T KOG1490|consen  277 PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIID----------------DGNVKVVQTSCVQEEGVMDVRTTACEA  339 (620)
T ss_pred             HHhcCCceEEEeecccccCccccCHHHHHHHHHHHh----------------ccCceEEEecccchhceeeHHHHHHHH
Confidence            445789999999999986633222    33333322                245789999999999999987766543

>KOG1532|consensus

Probab=98.55  E-value=1.3e-07  Score=68.08  Aligned_cols=126  Identities=16%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             EEEEEEEcCCChh-hH-----HhHHhhcC--CCCEEEEEEECC---CCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          26 IVFTTHDLGGHVQ-AR-----RVWRDYFP--AVDAIVFIIDAS---DRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        26 ~~~~~~Dt~G~~~-~~-----~~~~~~~~--~ad~ii~v~D~~---~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      ....++|||||-. |.     ...-..++  .--+++|++|..   +|..|-...-+-..++   .....|+++|.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil---yktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL---YKTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH---HhccCCeEEEEeccc
Confidence            6688999999743 11     11111222  344889999974   3444533322223333   334689999999999


Q ss_pred             cCCcCCHHHHHhhhcccCc---------cC--CCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          95 IFDAASEDEVRHFFGLYGL---------TT--GKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        95 l~~~~~~~~i~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+..=..++..-++.+..         ..  ...-.+..+-..+++..+.|||.+|.|.+++|..+-+.+
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence            9763222222111111100         00  000011122233567899999999999999998876543

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1.7e-06  Score=66.05  Aligned_cols=87  Identities=24%  Similarity=0.263  Sum_probs=63.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +.+++|++..+++.||||++.|..-....+.-+|.++.|+|+...-.- ....+ .++.   .+.+.||+-++||.|...
T Consensus        73 VMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KL-feVc---rlR~iPI~TFiNKlDR~~  147 (528)
T COG4108          73 VMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKL-FEVC---RLRDIPIFTFINKLDREG  147 (528)
T ss_pred             EEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHHH-HHHH---hhcCCceEEEeecccccc
Confidence            678899999999999999999988777778889999999999753211 11233 3333   235899999999999765


Q ss_pred             cCCH---HHHHhhhc
Q psy2161          98 AASE---DEVRHFFG  109 (155)
Q Consensus        98 ~~~~---~~i~~~~~  109 (155)
                      ..+.   +++.+.+.
T Consensus       148 rdP~ELLdEiE~~L~  162 (528)
T COG4108         148 RDPLELLDEIEEELG  162 (528)
T ss_pred             CChHHHHHHHHHHhC
Confidence            3332   35555554

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.51  E-value=1.9e-06  Score=66.12  Aligned_cols=35  Identities=26%  Similarity=0.456  Sum_probs=27.4

Q ss_pred             EEEEEEEcCCC----hhhHHhHHhh---cCCCCEEEEEEECC
Q psy2161          26 IVFTTHDLGGH----VQARRVWRDY---FPAVDAIVFIIDAS   60 (155)
Q Consensus        26 ~~~~~~Dt~G~----~~~~~~~~~~---~~~ad~ii~v~D~~   60 (155)
                      ..+++||+||.    .....+...+   +++||++++|+|..
T Consensus        72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            67999999994    3344454455   88999999999996

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.49  E-value=4.3e-07  Score=67.98  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=67.6

Q ss_pred             EEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC
Q psy2161          21 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS  100 (155)
Q Consensus        21 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~  100 (155)
                      ++..|+.+.|.||+|...-...   ...-||.++++.+......+...+.   .++      ...-++|+||+|+.+...
T Consensus       144 ~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~------E~aDIiVVNKaDl~~~~~  211 (332)
T PRK09435        144 CEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM------ELADLIVINKADGDNKTA  211 (332)
T ss_pred             HhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh------hhhheEEeehhcccchhH
Confidence            3446789999999997632222   3557999999986443333333222   121      122389999999865322


Q ss_pred             H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         101 E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       101 ~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .    .++...+....          .......-+++.+||++|.|++++++.+.+.+
T Consensus       212 a~~~~~el~~~L~l~~----------~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        212 ARRAAAEYRSALRLLR----------PKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             HHHHHHHHHHHHhccc----------ccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            2    23333332200          00000113689999999999999999988753

>TIGR00101 ureG urease accessory protein UreG

Probab=98.47  E-value=4.7e-07  Score=63.25  Aligned_cols=101  Identities=16%  Similarity=0.272  Sum_probs=63.4

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE--EEEEeCCCcCCc--CC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI--LILGNKIDIFDA--AS  100 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi--ilv~nK~Dl~~~--~~  100 (155)
                      +....+.++.|..-..... ..+  ++.++.|+|+.+..+...  ...         .....  ++++||+|+.+.  ..
T Consensus        91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~  156 (199)
T TIGR00101        91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGAD  156 (199)
T ss_pred             CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccccccc
Confidence            4567788999942211222 122  688999999976443211  000         12334  889999999753  22


Q ss_pred             HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...+.+.+..              + ....+++++||++|.|++++++|+.++.
T Consensus       157 ~~~~~~~~~~--------------~-~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       157 LGVMERDAKK--------------M-RGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHHH--------------h-CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3333333332              1 1346799999999999999999998753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.47  E-value=4.7e-06  Score=52.96  Aligned_cols=73  Identities=25%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChh----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      |.......+.+++..+.++||||-..          +...... +..+|+++||+|++++.. +.....+..+ +    .
T Consensus        34 T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~  106 (116)
T PF01926_consen   34 TRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILREL-K----N  106 (116)
T ss_dssp             SSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHH-H----T
T ss_pred             eeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----c
Confidence            33333456678899999999999521          1223344 489999999999776221 2223344444 2    4


Q ss_pred             CCcEEEEEeC
Q psy2161          83 DVPILILGNK   92 (155)
Q Consensus        83 ~~piilv~nK   92 (155)
                      ++|+++|+||
T Consensus       107 ~~~~i~v~NK  116 (116)
T PF01926_consen  107 KKPIILVLNK  116 (116)
T ss_dssp             TSEEEEEEES
T ss_pred             CCCEEEEEcC
Confidence            7899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13796 GTPase YqeH; Provisional

Probab=98.45  E-value=1.3e-06  Score=66.45  Aligned_cols=99  Identities=19%  Similarity=0.357  Sum_probs=59.3

Q ss_pred             hhhHHhHHhhcCCCC-EEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCcc
Q psy2161          37 VQARRVWRDYFPAVD-AIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLT  114 (155)
Q Consensus        37 ~~~~~~~~~~~~~ad-~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~  114 (155)
                      ..|...... +..++ .|++|+|+.+...-  ....+.+..     .+.|+++|+||+|+.. ....+.+..++....  
T Consensus        57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~--  126 (365)
T PRK13796         57 DDFLKLLNG-IGDSDALVVNVVDIFDFNGS--WIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA--  126 (365)
T ss_pred             HHHHHHHHh-hcccCcEEEEEEECccCCCc--hhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH--
Confidence            345555444 44555 99999999774311  112233332     2679999999999964 233344433322100  


Q ss_pred             CCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         115 TGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                              .........++.+||++|.|++++++.+.+.
T Consensus       127 --------k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        127 --------KELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             --------HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                    0011111258899999999999999998653

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.44  E-value=1.4e-06  Score=55.60  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             EEEcCCChhhHHhH----HhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161          30 THDLGGHVQARRVW----RDYFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV  104 (155)
Q Consensus        30 ~~Dt~G~~~~~~~~----~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i  104 (155)
                      ..||||.--..+.|    ......+|++++|-.++++++. ..-   +.      ....+|+|-|.+|.||.+.......
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~---f~------~~~~k~vIgvVTK~DLaed~dI~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPG---FL------DIGVKKVIGVVTKADLAEDADISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcc---cc------cccccceEEEEecccccchHhHHHH
Confidence            57999954333333    3445689999999999887443 210   11      1235689999999999853333344


Q ss_pred             HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..++...                ..-++|++|+.+..|+++++++|..
T Consensus       112 ~~~L~ea----------------Ga~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         112 KRWLREA----------------GAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHc----------------CCcceEEEeccCcccHHHHHHHHHh
Confidence            4444331                2347999999999999999999875

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.42  E-value=1.9e-06  Score=71.98  Aligned_cols=67  Identities=16%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ++.++++||||+..|.......++.+|++|+|+|+...-.... ...+.....    .++|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            5889999999999999888888999999999999986433222 223333322    368999999999986

>KOG3886|consensus

Probab=98.40  E-value=1.2e-06  Score=61.65  Aligned_cols=85  Identities=20%  Similarity=0.350  Sum_probs=60.7

Q ss_pred             CCCCCceeEEEECC-EEEEEEEcCCChhhHH-----hHHhhcCCCCEEEEEEECCCCCc---hHHHHHHHHHHHhCCCCC
Q psy2161          12 PTLHPTSEELSMGD-IVFTTHDLGGHVQARR-----VWRDYFPAVDAIVFIIDASDRSR---FPESKYELDSLLADDALT   82 (155)
Q Consensus        12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~-----~~~~~~~~ad~ii~v~D~~~~~~---~~~~~~~l~~~~~~~~~~   82 (155)
                      +|+.+....+.+-| .-+.+||.+||+.+..     .-.+.+++.+++++|||++..+-   +......++.++++  .+
T Consensus        38 ~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP  115 (295)
T KOG3886|consen   38 ATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SP  115 (295)
T ss_pred             CcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CC
Confidence            56666666666644 8999999999986543     34567889999999999976432   23333445555543  35


Q ss_pred             CCcEEEEEeCCCcCCc
Q psy2161          83 DVPILILGNKIDIFDA   98 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~   98 (155)
                      ...+.+..+|.|+...
T Consensus       116 ~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen  116 EAKIFCLLHKMDLVQE  131 (295)
T ss_pred             cceEEEEEeechhccc
Confidence            6789999999998753

>PTZ00416 elongation factor 2; Provisional

Probab=98.39  E-value=2.2e-06  Score=71.51  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ++.++++||||+..|.......++.+|++|+|+|++..-... ....+..+..    .++|+++++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            578999999999999888888899999999999997642222 2233344432    258999999999986

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.38  E-value=2.6e-06  Score=63.15  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=65.6

Q ss_pred             EECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH
Q psy2161          22 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE  101 (155)
Q Consensus        22 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~  101 (155)
                      +..++.+.|.||+|.....   ......+|.++++.+....   +++......+      ..+|.++|+||+|+.+....
T Consensus       123 ~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~  190 (300)
T TIGR00750       123 DAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNV  190 (300)
T ss_pred             HhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHH
Confidence            3457999999999954211   2245668888888544322   2322222222      25788999999998753322


Q ss_pred             HHHHhhh--cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         102 DEVRHFF--GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       102 ~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..+...+  ....+        .........+++.+||++|.|++++++++.+.
T Consensus       191 ~~~~~~~~~~l~~l--------~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~  236 (300)
T TIGR00750       191 TIARLMLALALEEI--------RRREDGWRPPVLTTSAVEGRGIDELWDAIEEH  236 (300)
T ss_pred             HHHHHHHHHHHhhc--------cccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            2212111  00000        00000111258999999999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=2.9e-06  Score=69.07  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             ceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          17 TSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        17 ~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      ...++.+.+ ++++++||||+-.|..-....++-+|++++|+|+...-..+.-.-| ...    ...++|.+++.||+|.
T Consensus        66 aa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa----~~~~vp~i~fiNKmDR  140 (697)
T COG0480          66 AATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQA----DKYGVPRILFVNKMDR  140 (697)
T ss_pred             eeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHH----hhcCCCeEEEEECccc
Confidence            356777886 9999999999999999999999999999999999763222221222 222    1247999999999997


Q ss_pred             CC---cCCHHHHHhhhcc
Q psy2161          96 FD---AASEDEVRHFFGL  110 (155)
Q Consensus        96 ~~---~~~~~~i~~~~~~  110 (155)
                      ..   .....++...+..
T Consensus       141 ~~a~~~~~~~~l~~~l~~  158 (697)
T COG0480         141 LGADFYLVVEQLKERLGA  158 (697)
T ss_pred             cccChhhhHHHHHHHhCC
Confidence            65   3455566555553

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.34  E-value=1.1e-05  Score=56.16  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhh-----------HHhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQA-----------RRVWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADD   79 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~   79 (155)
                      .|.........+++.++.++||||-...           ...+.....++|++++|+|+..... ...+..++.+.....
T Consensus        35 ~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~  114 (196)
T cd01852          35 VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK  114 (196)
T ss_pred             cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH
Confidence            3555556677778999999999994321           1123334568999999999876221 122233333332111


Q ss_pred             CCCCCcEEEEEeCCCcCC
Q psy2161          80 ALTDVPILILGNKIDIFD   97 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~   97 (155)
                        .-.++++|.|++|...
T Consensus       115 --~~~~~ivv~T~~d~l~  130 (196)
T cd01852         115 --VLDHTIVLFTRGDDLE  130 (196)
T ss_pred             --hHhcEEEEEECccccC
Confidence              1258999999999654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.31  E-value=2.9e-06  Score=59.60  Aligned_cols=103  Identities=16%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--CHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--SED  102 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  102 (155)
                      +..+.+.||.|.-....   .+....+..+.|+|+.+......  . ...      ....|.++++||+|+.+..  ...
T Consensus       102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccchhhHH
Confidence            45788889888311111   11123556667888865432211  0 011      1246889999999996532  223


Q ss_pred             HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++.+.+..              .. ...+++++||++|.|++++++|+.+..
T Consensus       170 ~~~~~l~~--------------~~-~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       170 KMKADAKK--------------IN-PEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHH--------------hC-CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            33333322              11 236799999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01850 CDC_Septin CDC/Septin

Probab=98.30  E-value=7.1e-06  Score=60.16  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             ccCCCCCc--eeEEEECC--EEEEEEEcCCChh------------------hHH--------hHHhhcC--CCCEEEEEE
Q psy2161          10 HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ------------------ARR--------VWRDYFP--AVDAIVFII   57 (155)
Q Consensus        10 ~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~------------------~~~--------~~~~~~~--~ad~ii~v~   57 (155)
                      +.+|.+..  ...++.+|  .++++|||||-..                  |..        .+...++  .+|+++|++
T Consensus        43 ~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i  122 (276)
T cd01850          43 IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFI  122 (276)
T ss_pred             cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEE
Confidence            45565554  34455566  6899999999311                  111        1112333  478889998


Q ss_pred             ECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          58 DASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        58 D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +.+.. .+... ...+..+.     ..+|+++|+||+|+..
T Consensus       123 ~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~  157 (276)
T cd01850         123 EPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             eCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence            87642 22222 23334442     2589999999999854

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.25  E-value=1.2e-05  Score=60.95  Aligned_cols=84  Identities=15%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccccc
Q psy2161          47 FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQ  126 (155)
Q Consensus        47 ~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  126 (155)
                      ..++|.+++|+++..+-....+..++....    ..++|.++|+||+||.+.  ..+....+..              . 
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~----~~~i~piIVLNK~DL~~~--~~~~~~~~~~--------------~-  168 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAW----ESGAEPVIVLTKADLCED--AEEKIAEVEA--------------L-  168 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHH----HcCCCEEEEEEChhcCCC--HHHHHHHHHH--------------h-
Confidence            578999999999964333333344444432    236778899999999653  2112222221              1 


Q ss_pred             CccEEEEEeeeccCCChHHHHHHHH
Q psy2161         127 MRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus       127 ~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      ..+..++.+|+++|.|++++..++.
T Consensus       169 ~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        169 APGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             CCCCcEEEEECCCCccHHHHHHHhh
Confidence            1346789999999999999999885

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.11  E-value=2.4e-05  Score=56.62  Aligned_cols=124  Identities=19%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             EECCEEEEEEEcCCCh-------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          22 SMGDIVFTTHDLGGHV-------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        22 ~~~~~~~~~~Dt~G~~-------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      .+++..+.+||+||-.       +++.....++...|.+++++++.++.--.. .+.+.++.-  ...+.+++++.|.+|
T Consensus        83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~--~~~~~~~i~~VtQ~D  159 (296)
T COG3596          83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVII--LGLDKRVLFVVTQAD  159 (296)
T ss_pred             hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHH--hccCceeEEEEehhh
Confidence            4466889999999843       478889999999999999999977532211 133344431  123489999999999


Q ss_pred             cCCc---------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          95 IFDA---------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        95 l~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ....         .+...+.++.+.      +-......++ .--+++..|+-.+.|++++...+.+.+|
T Consensus       160 ~a~p~~~W~~~~~~p~~a~~qfi~~------k~~~~~~~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         160 RAEPGREWDSAGHQPSPAIKQFIEE------KAEALGRLFQ-EVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             hhccccccccccCCCCHHHHHHHHH------HHHHHHHHHh-hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            6432         112222222221      0000011111 1235677777899999999999988764

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.08  E-value=1.2e-05  Score=44.27  Aligned_cols=43  Identities=33%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             CCEEEEEEECCCC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          50 VDAIVFIIDASDR--SRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        50 ad~ii~v~D~~~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      .++++|++|+|..  -+.+.....+.++...  ..++|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            6799999999864  4556666777777533  35899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0461|consensus

Probab=98.07  E-value=4.2e-05  Score=57.16  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=69.9

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCCc----CC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFDA----AS  100 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~~----~~  100 (155)
                      .++.+.|+||+.+..........-.|..++|+|+.....-+.+ .-.+.+++      -+..++|+||+|+..+    ..
T Consensus        70 lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~sk  143 (522)
T KOG0461|consen   70 LQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASK  143 (522)
T ss_pred             ceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhH
Confidence            6789999999988777666656667889999999753222221 12233332      3567888899986431    11


Q ss_pred             HH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccC----CChHHHHHHHHhhc
Q psy2161         101 ED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR----QGFGNGFRWLANYI  154 (155)
Q Consensus       101 ~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----~~i~~~~~~l~~~i  154 (155)
                      .+    .+.+.++..             -...+.+++++||+.|    ++|.|+.+.|..++
T Consensus       144 i~k~~kk~~KtLe~t-------------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  144 IEKSAKKVRKTLEST-------------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             HHHHHHHHHHHHHhc-------------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            12    222223221             1223568999999999    78888888776543

>cd01882 BMS1 Bms1

Probab=98.05  E-value=2.8e-05  Score=55.35  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCcCCcC-C
Q psy2161          23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDIFDAA-S  100 (155)
Q Consensus        23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl~~~~-~  100 (155)
                      .++.++.++||||..  ..+ ....+.+|++++++|++....... ...+..+ ..   .+.|. ++|+||+|+.+.. .
T Consensus        80 ~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~  151 (225)
T cd01882          80 GKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKT  151 (225)
T ss_pred             cCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHH
Confidence            356899999999864  222 334678999999999975433222 2222222 21   24674 5599999986421 1


Q ss_pred             HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC
Q psy2161         101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG  142 (155)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  142 (155)
                      ..++.+.+...         .... .....+++.+||++...
T Consensus       152 ~~~~~~~l~~~---------~~~~-~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         152 LRKTKKRLKHR---------FWTE-VYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHH---------HHHh-hCCCCcEEEEeeccCCC
Confidence            22222222110         0000 11245899999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0466|consensus

Probab=98.02  E-value=9.1e-06  Score=59.68  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--   99 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--   99 (155)
                      ..+.|.|+||++-....+..-..-.|++++.+..+.    |++-+.+..  -++.     .-+.++++-||+|+....  
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-----~LkhiiilQNKiDli~e~~A  197 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-----KLKHIIILQNKIDLIKESQA  197 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-----hhceEEEEechhhhhhHHHH
Confidence            578999999998665555444445678888887754    233333221  1121     236799999999986521  


Q ss_pred             --CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         100 --SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       100 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                        ..+++..+...              -...+-+++++||--+.||+-+.+++++.+|
T Consensus       198 ~eq~e~I~kFi~~--------------t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  198 LEQHEQIQKFIQG--------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             HHHHHHHHHHHhc--------------cccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence              22344444433              2334568999999999999999999998875

>KOG0468|consensus

Probab=98.01  E-value=1.1e-05  Score=64.67  Aligned_cols=66  Identities=18%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      +-+++.||||+..|..-....++-+|++++|+|+...-.+.. ...+    ++.-..+.|+++|+||.|..
T Consensus       197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~i----khaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERII----KHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHH----HHHHhccCcEEEEEehhHHH
Confidence            789999999999999888888999999999999986554432 2223    33334578999999999954

>KOG0460|consensus

Probab=97.87  E-value=0.0001  Score=54.97  Aligned_cols=113  Identities=19%  Similarity=0.292  Sum_probs=72.9

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH--HHHHHHHhCCCCCCCcEEEEEeCCCcCC----
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK--YELDSLLADDALTDVPILILGNKIDIFD----   97 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~--~~l~~~~~~~~~~~~piilv~nK~Dl~~----   97 (155)
                      ...++-=.|+||+-.|...+-.-..+-|+.|+|+.+++..- ...+  -++....     .-..+++.+||.|+.+    
T Consensus       115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~  188 (449)
T KOG0460|consen  115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV-----GVKHIVVFINKVDLVDDPEM  188 (449)
T ss_pred             cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc-----CCceEEEEEecccccCCHHH
Confidence            45888899999999999888888889999999999987422 2222  2222221     2356888999999873    


Q ss_pred             -cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec---cCCC-------hHHHHHHHHhhc
Q psy2161          98 -AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL---KRQG-------FGNGFRWLANYI  154 (155)
Q Consensus        98 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i  154 (155)
                       .....++++.+..++            +...+.+++.-||+   .|.+       |..+++.+-.+|
T Consensus       189 leLVEmE~RElLse~g------------f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi  244 (449)
T KOG0460|consen  189 LELVEMEIRELLSEFG------------FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI  244 (449)
T ss_pred             HHHHHHHHHHHHHHcC------------CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence             223446666666543            33345677766654   5533       445555544433

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.83  E-value=5.8e-05  Score=50.88  Aligned_cols=64  Identities=19%  Similarity=0.303  Sum_probs=44.2

Q ss_pred             EEEEEEEcCCChh----hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161          26 IVFTTHDLGGHVQ----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI   93 (155)
Q Consensus        26 ~~~~~~Dt~G~~~----~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~   93 (155)
                      ..+.++||||-..    ....+..|++.+|++++|.+++....-.....+.... ..   ....+++|.||+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence            6799999999643    3467888999999999999998754444333333333 22   234499999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0459|consensus

Probab=97.82  E-value=2.1e-05  Score=59.66  Aligned_cols=128  Identities=16%  Similarity=0.086  Sum_probs=82.1

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      --|+++-.+.++....++++.|+||+..|.+.+-.-..+||+-++|+.+..   ...|+.-.+.-+...-.....-...+
T Consensus       142 gKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV  221 (501)
T KOG0459|consen  142 GKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI  221 (501)
T ss_pred             cceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence            356777778888888999999999999998888877889999999987732   12232221222222211222346789


Q ss_pred             EEEeCCCcCC-cCCH---HHHHhhhcccCccCCCccccc-cccc-CccEEEEEeeeccCCChHHHH
Q psy2161          88 ILGNKIDIFD-AASE---DEVRHFFGLYGLTTGKEFTSR-EILQ-MRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        88 lv~nK~Dl~~-~~~~---~~i~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      +++||+|.+. +.+.   +++.+.+..+         ++ ..++ .....+++||..+|.++.+..
T Consensus       222 v~vNKMddPtvnWs~eRy~E~~~k~~~f---------Lr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  222 VLINKMDDPTVNWSNERYEECKEKLQPF---------LRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             EEEEeccCCccCcchhhHHHHHHHHHHH---------HHHhcccCCCCceeeecccccccchhhcc
Confidence            9999999765 3332   3333333221         00 0011 245689999999999987654

>KOG0464|consensus

Probab=97.72  E-value=8.9e-06  Score=62.06  Aligned_cols=87  Identities=18%  Similarity=0.170  Sum_probs=63.1

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      -.+++|+|++++++||||+..|+-....+++--|+++.|||++-.-.-+.+.-|-     .....++|-...+||+|...
T Consensus        94 av~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwr-----qadk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen   94 AVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWR-----QADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             eeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeeh-----hccccCCchhhhhhhhhhhh
Confidence            4567888999999999999999999999999999999999997532222222332     12334689999999999654


Q ss_pred             ---cCCHHHHHhhhc
Q psy2161          98 ---AASEDEVRHFFG  109 (155)
Q Consensus        98 ---~~~~~~i~~~~~  109 (155)
                         ....+.+.+.++
T Consensus       169 anfe~avdsi~ekl~  183 (753)
T KOG0464|consen  169 ANFENAVDSIEEKLG  183 (753)
T ss_pred             hhhhhHHHHHHHHhC
Confidence               223344555544

>KOG3905|consensus

Probab=97.68  E-value=0.00084  Score=50.05  Aligned_cols=132  Identities=13%  Similarity=0.122  Sum_probs=83.8

Q ss_pred             cccCCCCCceeEEEECC------EEEEEEEcCCChhhHHhHHhhcCCC----CEEEEEEECCCCCch-HHHHHHHHHH--
Q psy2161           9 QHMPTLHPTSEELSMGD------IVFTTHDLGGHVQARRVWRDYFPAV----DAIVFIIDASDRSRF-PESKYELDSL--   75 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~~------~~~~~~Dt~G~~~~~~~~~~~~~~a----d~ii~v~D~~~~~~~-~~~~~~l~~~--   75 (155)
                      .+.+-.|.....+++++      .++.+|=.-|......+.+..+...    -.+|+++|.++|+.. +.+..|..-+  
T Consensus        77 ~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~e  156 (473)
T KOG3905|consen   77 TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLRE  156 (473)
T ss_pred             ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence            45555666666666643      7899999999988888887766643    278889999998553 3333333200  


Q ss_pred             --------------------------Hh---C-------C----------------------CCCCCcEEEEEeCCCcCC
Q psy2161          76 --------------------------LA---D-------D----------------------ALTDVPILILGNKIDIFD   97 (155)
Q Consensus        76 --------------------------~~---~-------~----------------------~~~~~piilv~nK~Dl~~   97 (155)
                                                ..   .       .                      ...++|+++|++|+|...
T Consensus       157 hidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s  236 (473)
T KOG3905|consen  157 HIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVS  236 (473)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhh
Confidence                                      00   0       0                      001479999999999743


Q ss_pred             cC-----CHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          98 AA-----SED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        98 ~~-----~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..     -.+    .+.+.+..             -+-..+-..+.+|+|...|++-+..+|...
T Consensus       237 ~leke~eyrDehfdfiq~~lRk-------------FCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  237 VLEKEHEYRDEHFDFIQSHLRK-------------FCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             HhhhcchhhHHHHHHHHHHHHH-------------HHHHcCceeEEeecccccchHHHHHHHHHH
Confidence            11     111    11112211             122345678999999999999999999865

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.67  E-value=0.00049  Score=50.73  Aligned_cols=90  Identities=14%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             hhcCCCCEEEEEEECCCCCchHH-HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccc
Q psy2161          45 DYFPAVDAIVFIIDASDRSRFPE-SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSRE  123 (155)
Q Consensus        45 ~~~~~ad~ii~v~D~~~~~~~~~-~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  123 (155)
                      .-..+.|-+++|+.+.+|+--.. +...|-..    ...++.-++++||+||.+...... .+.+..             
T Consensus        75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~-------------  136 (301)
T COG1162          75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAV-KELLRE-------------  136 (301)
T ss_pred             CcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHH-HHHHHH-------------
Confidence            33446777888887777643322 22332222    224666677799999976433332 222222             


Q ss_pred             cccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         124 ILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       124 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                       +...++..+.+|++++.+++++..++...
T Consensus       137 -y~~~gy~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         137 -YEDIGYPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             -HHhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence             23356789999999999999999988754

>KOG0465|consensus

Probab=97.64  E-value=0.00017  Score=57.38  Aligned_cols=74  Identities=19%  Similarity=0.160  Sum_probs=53.1

Q ss_pred             eEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ..+.+.+++++++||||+-.|.--....++--|+.++++|+...-.-....-|....     ..++|.+...||.|..+
T Consensus        97 t~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-----ry~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen   97 TYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-----RYNVPRICFINKMDRMG  170 (721)
T ss_pred             eeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-----hcCCCeEEEEehhhhcC
Confidence            344566899999999999888777777788899999999886432222222232222     24799999999999765

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.62  E-value=0.0011  Score=52.22  Aligned_cols=135  Identities=13%  Similarity=0.172  Sum_probs=84.1

Q ss_pred             CCcccCCCCCceeEEEECC------EEEEEEEcCCChhhHHhHHhhcCCC----CEEEEEEECCCCCchH-HHHHHHH--
Q psy2161           7 TAQHMPTLHPTSEELSMGD------IVFTTHDLGGHVQARRVWRDYFPAV----DAIVFIIDASDRSRFP-ESKYELD--   73 (155)
Q Consensus         7 ~~~~~pT~~~~~~~~~~~~------~~~~~~Dt~G~~~~~~~~~~~~~~a----d~ii~v~D~~~~~~~~-~~~~~l~--   73 (155)
                      .+.+.+|.|....-+++.+      .++.+|-.+|...+..+.+..+...    -.+|+|+|.+.|+.+- .+..|+.  
T Consensus        48 ~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl  127 (472)
T PF05783_consen   48 IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVL  127 (472)
T ss_pred             cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHH
Confidence            3456677776544444422      6899999999888888777666532    3889999999987652 2223222  


Q ss_pred             -----H------------------HHh------CC-----------------C-------------CCCCcEEEEEeCCC
Q psy2161          74 -----S------------------LLA------DD-----------------A-------------LTDVPILILGNKID   94 (155)
Q Consensus        74 -----~------------------~~~------~~-----------------~-------------~~~~piilv~nK~D   94 (155)
                           .                  +.+      ..                 .             .-++|++||++|+|
T Consensus       128 ~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD  207 (472)
T PF05783_consen  128 REHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSD  207 (472)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEeccc
Confidence                 0                  000      00                 0             00379999999999


Q ss_pred             cCCcCC------HH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          95 IFDAAS------ED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        95 l~~~~~------~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ......      .+   -+.+++..             -+-..+...+.||++...|++-++++|...+
T Consensus       208 ~~~~Lek~~~~~~e~~DfIqq~LR~-------------~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  208 KIETLEKETDWKEEHFDFIQQYLRT-------------FCLKYGASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             HHHHHhhhcccchhhHHHHHHHHHH-------------HHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence            643111      11   22222222             1233566789999999999999999987654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PTZ00258 GTP-binding protein; Provisional

Probab=97.62  E-value=0.001  Score=51.10  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECC
Q psy2161          26 IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDAS   60 (155)
Q Consensus        26 ~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~   60 (155)
                      .+++++||||-..       ........++.||++++|+|..
T Consensus        85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            3599999999432       1112333467899999999974

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.61  E-value=0.0003  Score=48.57  Aligned_cols=100  Identities=11%  Similarity=0.137  Sum_probs=63.0

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-CCCCCCCcEEEEEeCCCcCCcC--CHH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA-DDALTDVPILILGNKIDIFDAA--SED  102 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~-~~~~~~~piilv~nK~Dl~~~~--~~~  102 (155)
                      ..+.|.+.+|+-.-.  ....+ ..+.-|+|+|.+..+....         + .+.... .=++|+||.|+...+  +.+
T Consensus        97 ~Dll~iEs~GNL~~~--~sp~L-~d~~~v~VidvteGe~~P~---------K~gP~i~~-aDllVInK~DLa~~v~~dle  163 (202)
T COG0378          97 LDLLFIESVGNLVCP--FSPDL-GDHLRVVVIDVTEGEDIPR---------KGGPGIFK-ADLLVINKTDLAPYVGADLE  163 (202)
T ss_pred             CCEEEEecCcceecc--cCcch-hhceEEEEEECCCCCCCcc---------cCCCceeE-eeEEEEehHHhHHHhCccHH
Confidence            578888888833211  11111 3448889999986432211         1 111112 557899999997733  335


Q ss_pred             HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .+.+....               -..+.+++.+|+++|.|++++++|+...
T Consensus       164 vm~~da~~---------------~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         164 VMARDAKE---------------VNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             HHHHHHHH---------------hCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            55544332               1145689999999999999999999764

>smart00053 DYNc Dynamin, GTPase

Probab=97.58  E-value=0.00068  Score=48.76  Aligned_cols=68  Identities=15%  Similarity=0.145  Sum_probs=45.0

Q ss_pred             EEEEEEEcCCCh-------------hhHHhHHhhcC-CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          26 IVFTTHDLGGHV-------------QARRVWRDYFP-AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        26 ~~~~~~Dt~G~~-------------~~~~~~~~~~~-~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      ..|.++||||-.             ....+...|++ ..+++++|+|++..-.-.........+    ...++|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence            789999999953             12345677888 456999999986432222222222222    224689999999


Q ss_pred             CCCcCC
Q psy2161          92 KIDIFD   97 (155)
Q Consensus        92 K~Dl~~   97 (155)
                      |.|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1424|consensus

Probab=97.57  E-value=0.00023  Score=55.65  Aligned_cols=78  Identities=22%  Similarity=0.310  Sum_probs=55.0

Q ss_pred             hHHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCC
Q psy2161          39 ARRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTG  116 (155)
Q Consensus        39 ~~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~  116 (155)
                      .+.+|+- +..+|+|+.++|+.+|--|..  +..+..++     ...+..+|+.||+||..........+++..      
T Consensus       165 WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~------  232 (562)
T KOG1424|consen  165 WRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFRQ------  232 (562)
T ss_pred             HHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHHh------
Confidence            4566665 678999999999999866633  33333333     245789999999999765555556666665      


Q ss_pred             CcccccccccCccEEEEEeeecc
Q psy2161         117 KEFTSREILQMRPIELFMCSVLK  139 (155)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~Sa~~  139 (155)
                                 .+++++.-||..
T Consensus       233 -----------~ni~~vf~SA~~  244 (562)
T KOG1424|consen  233 -----------NNIPVVFFSALA  244 (562)
T ss_pred             -----------cCceEEEEeccc
Confidence                       457888888876

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.51  E-value=0.0028  Score=48.38  Aligned_cols=122  Identities=17%  Similarity=0.164  Sum_probs=71.1

Q ss_pred             CCEEEEEEEcCCChhhHHh--HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC----
Q psy2161          24 GDIVFTTHDLGGHVQARRV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD----   97 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~--~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~----   97 (155)
                      .+.-+.|.||.|++.+-..  .-..=++.|-.++++.+++.-+.. .+.-+.-.+    .-..|++++.+|+|+..    
T Consensus       199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~----a~~lPviVvvTK~D~~~ddr~  273 (527)
T COG5258         199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL----AMELPVIVVVTKIDMVPDDRF  273 (527)
T ss_pred             cccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh----hhcCCEEEEEEecccCcHHHH
Confidence            4467899999999876442  222334788899999887642221 122222221    12689999999999865    


Q ss_pred             cCCHHHHHhhhcc---cCccCCCccc-----ccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161          98 AASEDEVRHFFGL---YGLTTGKEFT-----SREILQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        98 ~~~~~~i~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      +-..+++...+..   .++..+....     .+...+..-.+++.+|+.+|.|++-+.+.+
T Consensus       274 ~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         274 QGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            2233444444432   1222121111     122223345789999999999976555443

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.40  E-value=0.00055  Score=43.40  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=41.7

Q ss_pred             hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          39 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        39 ~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +......+++.++.++.|++.++.++++..  |...++.. ...+.|.++++||.|+.+
T Consensus        36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~   91 (124)
T smart00010       36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE   91 (124)
T ss_pred             hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence            444556678899999999999988887654  66666533 235689999999999843

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0705|consensus

Probab=97.38  E-value=0.00083  Score=53.14  Aligned_cols=129  Identities=18%  Similarity=0.274  Sum_probs=85.4

Q ss_pred             CCCCCcccCCCCC-ceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           4 NDRTAQHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         4 ~~~~~~~~pT~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      .|....-+.+.|. ..+.+..++  ..+.+.|.+|..     -..|...+|++||||...+.++|+.+..+...+-....
T Consensus        52 tgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~  126 (749)
T KOG0705|consen   52 TGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN  126 (749)
T ss_pred             cceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccc
Confidence            3444444545554 344444443  778888988844     33456679999999999999999888766666644444


Q ss_pred             CCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          81 LTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ....|+++++++--...    ..........+                .....+.+++.+|.+|.+++.+|+.++..
T Consensus       127 r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~----------------~~~krcsy~et~atyGlnv~rvf~~~~~k  187 (749)
T KOG0705|consen  127 ISDLPLILVGTQDHISAKRPRVITDDRARQLS----------------AQMKRCSYYETCATYGLNVERVFQEVAQK  187 (749)
T ss_pred             cccchHHhhcCcchhhcccccccchHHHHHHH----------------HhcCccceeecchhhhhhHHHHHHHHHHH
Confidence            56789999988643221    12222222222                23356789999999999999999987753

>KOG0447|consensus

Probab=97.37  E-value=0.0083  Score=47.87  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=67.6

Q ss_pred             CCCCceeEEEECC---EEEEEEEcCCC-------------hhhHHhHHhhcCCCCEEEEEEE-CCCCCchHHHHHHHHHH
Q psy2161          13 TLHPTSEELSMGD---IVFTTHDLGGH-------------VQARRVWRDYFPAVDAIVFIID-ASDRSRFPESKYELDSL   75 (155)
Q Consensus        13 T~~~~~~~~~~~~---~~~~~~Dt~G~-------------~~~~~~~~~~~~~ad~ii~v~D-~~~~~~~~~~~~~l~~~   75 (155)
                      |+......+.+.|   -+..+.|.||-             +...++..+|..+.++||+|+- .+    .+.-+.....+
T Consensus       396 TVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----VDAERSnVTDL  471 (980)
T KOG0447|consen  396 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----VDAERSIVTDL  471 (980)
T ss_pred             ccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC----cchhhhhHHHH
Confidence            4444566677766   78999999993             3456788899999999999983 32    22223344555


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcc
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGL  110 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~  110 (155)
                      .......+.-.|+|++|.|+.+  ..++..|.+.++.
T Consensus       472 Vsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  472 VSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             HHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            5555667889999999999987  3577788887764

>KOG0410|consensus

Probab=97.36  E-value=0.00038  Score=51.71  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=71.4

Q ss_pred             CCCCCceeEEEE-CCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161          12 PTLHPTSEELSM-GDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus        12 pT~~~~~~~~~~-~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      .|..++.+.... +|..+-+.||-|-         ..|+....+ ...||.++.|+|++.|+--.. .......++....
T Consensus       211 ATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~q-~e~Vl~vL~~igv  288 (410)
T KOG0410|consen  211 ATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEEQ-RETVLHVLNQIGV  288 (410)
T ss_pred             eeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-HhhcceEEEEeecCCccHHHH-HHHHHHHHHhcCC
Confidence            466665555555 4588999999983         235555554 568999999999998854332 3444455555555


Q ss_pred             CCCcEEE----EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          82 TDVPILI----LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        82 ~~~piil----v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +..|.+.    |-||+|......      .-+.                  + ..+.+||++|.|++++...+-.
T Consensus       289 ~~~pkl~~mieVdnkiD~e~~~~------e~E~------------------n-~~v~isaltgdgl~el~~a~~~  338 (410)
T KOG0410|consen  289 PSEPKLQNMIEVDNKIDYEEDEV------EEEK------------------N-LDVGISALTGDGLEELLKAEET  338 (410)
T ss_pred             CcHHHHhHHHhhccccccccccC------cccc------------------C-CccccccccCccHHHHHHHHHH
Confidence            4445444    445555432111      0111                  1 2678999999999999887654

>KOG1707|consensus

Probab=97.35  E-value=0.0034  Score=49.97  Aligned_cols=75  Identities=15%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          18 SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        18 ~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      +..+...|  ..+.+-|.+-. ....+...- ..||+++++||++++.+|.........-   ......|++.|+.|+|+
T Consensus       464 vn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~---~~~~~~Pc~~va~K~dl  538 (625)
T KOG1707|consen  464 VNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKY---FDLYKIPCLMVATKADL  538 (625)
T ss_pred             eeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHh---hhccCCceEEEeecccc
Confidence            44444444  67888887754 222222222 6899999999999999997765444433   22257899999999999


Q ss_pred             CC
Q psy2161          96 FD   97 (155)
Q Consensus        96 ~~   97 (155)
                      .+
T Consensus       539 De  540 (625)
T KOG1707|consen  539 DE  540 (625)
T ss_pred             ch
Confidence            65

>KOG1143|consensus

Probab=97.26  E-value=0.0031  Score=48.01  Aligned_cols=120  Identities=17%  Similarity=0.267  Sum_probs=71.7

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH-
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASED-  102 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-  102 (155)
                      .-++|+|.+|+.+|....-+.+.  ..|..++|+.+...-.. ..+..+.-+..    -++|++++.+|+|+.+....+ 
T Consensus       249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~  323 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKK  323 (591)
T ss_pred             ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH----hCCCeEEEEEeeccccchhHHH
Confidence            56899999999998765444333  35677788877543221 11223333321    268999999999998743333 


Q ss_pred             ---HHHhhhcccCccC-C-------CcccccccccC-ccEEEEEeeeccCCChHHHHHHH
Q psy2161         103 ---EVRHFFGLYGLTT-G-------KEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus       103 ---~i~~~~~~~~~~~-~-------~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                         ++...+...+.++ +       +...+.+++.. .-.+++.+|+.+|+|+.-+...|
T Consensus       324 tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  324 TVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence               3333333333332 1       11122333333 45689999999999987665443

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.26  E-value=0.0057  Score=45.58  Aligned_cols=77  Identities=6%  Similarity=0.094  Sum_probs=44.0

Q ss_pred             eEEEECCEEEEEEEcCCChhhH-------HhHHhhc--CCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCC-CCCCcEE
Q psy2161          19 EELSMGDIVFTTHDLGGHVQAR-------RVWRDYF--PAVDAIVFIIDASDRSRFPES-KYELDSLLADDA-LTDVPIL   87 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~--~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~-~~~~pii   87 (155)
                      .....+|.+++++||||.....       .....++  .+.|+++||..++.. .+... ...++.+..... .--.+++
T Consensus        79 ~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~I  157 (313)
T TIGR00991        79 VSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSL  157 (313)
T ss_pred             EEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEE
Confidence            3345688999999999965321       1222222  269999999665432 12211 223333322111 0125799


Q ss_pred             EEEeCCCcC
Q psy2161          88 ILGNKIDIF   96 (155)
Q Consensus        88 lv~nK~Dl~   96 (155)
                      +|.|+.|..
T Consensus       158 VVfTh~d~~  166 (313)
T TIGR00991       158 VVLTHAQFS  166 (313)
T ss_pred             EEEECCccC
Confidence            999999965

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.26  E-value=0.003  Score=45.69  Aligned_cols=78  Identities=5%  Similarity=0.043  Sum_probs=45.1

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhH----------HhHHhhcC--CCCEEEEEEECCCCC-chH--HHHHHHHHHHhCCCC
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQAR----------RVWRDYFP--AVDAIVFIIDASDRS-RFP--ESKYELDSLLADDAL   81 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~~~--~ad~ii~v~D~~~~~-~~~--~~~~~l~~~~~~~~~   81 (155)
                      .......++.++++|||||-....          .....|++  ..++++||..++... ...  .+...+.+.....  
T Consensus        70 ~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--  147 (249)
T cd01853          70 REVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--  147 (249)
T ss_pred             EEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--
Confidence            344555678999999999954321          11233443  678899987665422 222  2223333332111  


Q ss_pred             CCCcEEEEEeCCCcC
Q psy2161          82 TDVPILILGNKIDIF   96 (155)
Q Consensus        82 ~~~piilv~nK~Dl~   96 (155)
                      --.++++|.||+|..
T Consensus       148 i~~~~ivV~T~~d~~  162 (249)
T cd01853         148 IWRNAIVVLTHAASS  162 (249)
T ss_pred             hHhCEEEEEeCCccC
Confidence            114799999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.22  E-value=0.00045  Score=50.89  Aligned_cols=56  Identities=20%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             CCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          83 DVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..+-++|+||+|+....  ..+.+.+.+..              + .....++.+||++|.|++++.+||.++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~--------------l-np~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACARE--------------V-NPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHh--------------h-CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999996422  23333333322              1 134679999999999999999999864

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.18  E-value=0.0011  Score=47.92  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=63.3

Q ss_pred             CCEEEEEEEcCCCh-hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCH
Q psy2161          24 GDIVFTTHDLGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASE  101 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~-~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~  101 (155)
                      -|+.+.+.+|.|-- +-...    ..-||.+++|+-..-.+..+..+.=+.++         .=++|.||+|... ....
T Consensus       120 aG~D~IiiETVGvGQsE~~I----~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~  186 (266)
T PF03308_consen  120 AGFDVIIIETVGVGQSEVDI----ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTV  186 (266)
T ss_dssp             TT-SEEEEEEESSSTHHHHH----HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCccHHHH----HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHH
Confidence            46889999998732 22222    34599999999776555554444344444         3478899999755 2234


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .++...+....          .....-..+++.|||.++.|++++++.+.+.
T Consensus       187 ~~l~~~l~l~~----------~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  187 RDLRSMLHLLR----------EREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             HHHHHHHHHCS----------TSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcc----------ccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45555444310          0001113479999999999999999988753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.17  E-value=0.00081  Score=45.94  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             CEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        51 d~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      |++++|+|+..+.+...  ..+.+... ....++|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987633321  12222211 1123589999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG2484|consensus

Probab=97.14  E-value=0.001  Score=50.58  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=49.5

Q ss_pred             CChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161          35 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL  110 (155)
Q Consensus        35 G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~  110 (155)
                      ....|..-....+..+|+||.|+|+.+|.+-...  ..++.+.. ...++..|+|+||+||......+++..++..
T Consensus       132 s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~-~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~  204 (435)
T KOG2484|consen  132 SKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQ-AHGNKKLILVLNKIDLVPREVVEKWLVYLRR  204 (435)
T ss_pred             hHHHHHHHHHHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHh-ccCCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence            3445666677778899999999999998665332  12222211 1235899999999999665556666666665

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.09  E-value=0.0027  Score=47.69  Aligned_cols=92  Identities=25%  Similarity=0.358  Sum_probs=60.9

Q ss_pred             cCCCh-hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161          33 LGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY  111 (155)
Q Consensus        33 t~G~~-~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~  111 (155)
                      .+|+. ++.......+..+|+++-|+|+.+|.+...  ..++.+.     .++|.++|+||+|+.+.....+..+.+...
T Consensus        17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~   89 (322)
T COG1161          17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKE   89 (322)
T ss_pred             CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhc
Confidence            36664 456677788899999999999998765533  2344553     245669999999997644455555555542


Q ss_pred             CccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161         112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                                      .+...+.++++.+.+...+.
T Consensus        90 ----------------~~~~~~~v~~~~~~~~~~i~  109 (322)
T COG1161          90 ----------------EGIKPIFVSAKSRQGGKKIR  109 (322)
T ss_pred             ----------------CCCccEEEEeecccCccchH
Confidence                            13445667777666644444

>KOG0467|consensus

Probab=97.07  E-value=0.0013  Score=53.85  Aligned_cols=77  Identities=18%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             cCCCCCcee----EEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCC
Q psy2161          11 MPTLHPTSE----ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus        11 ~pT~~~~~~----~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      +.|.|.+++    ....+++.++++|+||+..|.+......+=+|+.++.+|+..   +++..-++    ...    ..+
T Consensus        53 eq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlr----q~~----~~~  124 (887)
T KOG0467|consen   53 EQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR----QAW----IEG  124 (887)
T ss_pred             hhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH----HHH----Hcc
Confidence            346666532    233367999999999999999999888899999999999864   34443332    221    124


Q ss_pred             CcEEEEEeCCCc
Q psy2161          84 VPILILGNKIDI   95 (155)
Q Consensus        84 ~piilv~nK~Dl   95 (155)
                      ...++|+||+|.
T Consensus       125 ~~~~lvinkidr  136 (887)
T KOG0467|consen  125 LKPILVINKIDR  136 (887)
T ss_pred             CceEEEEehhhh
Confidence            578899999993

>KOG3887|consensus

Probab=96.77  E-value=0.012  Score=42.43  Aligned_cols=69  Identities=23%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             EEEEEEEcCCChhhH-H--hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh--CCCCCCCcEEEEEeCCCcC
Q psy2161          26 IVFTTHDLGGHVQAR-R--VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA--DDALTDVPILILGNKIDIF   96 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~-~--~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~--~~~~~~~piilv~nK~Dl~   96 (155)
                      +.|++||.|||..+- +  -....++++.+++||+|+.+.  +.++..-+..+..  ..-.+++.+=+.+.|.|-.
T Consensus        75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGL  148 (347)
T KOG3887|consen   75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGL  148 (347)
T ss_pred             cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence            679999999997642 2  245668899999999999652  2222222222211  1223578888999999954

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.73  E-value=0.021  Score=38.88  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=52.1

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHH
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE  103 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  103 (155)
                      +++.+.++|||+....  .....+..||.+++++..+. .+...+..+++.+.+    .+.|+.+|+||+|.... ...+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~-~~~~  162 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLNDE-IAEE  162 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc-hHHH
Confidence            4689999999975432  23345678999999998763 455566666655532    24678999999997542 2334


Q ss_pred             HHhhhcc
Q psy2161         104 VRHFFGL  110 (155)
Q Consensus       104 i~~~~~~  110 (155)
                      +.+.++.
T Consensus       163 ~~~~~~~  169 (179)
T cd03110         163 IEDYCEE  169 (179)
T ss_pred             HHHHHHH
Confidence            4444443

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.72  E-value=0.026  Score=39.78  Aligned_cols=84  Identities=13%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChh-------hHH----hHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQ-------ARR----VWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDA   80 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~----~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~   80 (155)
                      |.........++|..+.++||||-..       ...    .......+.+++++|+....... -.....++..+.....
T Consensus        36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~  115 (212)
T PF04548_consen   36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI  115 (212)
T ss_dssp             -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG
T ss_pred             ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH
Confidence            44455666688999999999999311       111    12234568999999999873221 1222344555543221


Q ss_pred             CCCCcEEEEEeCCCcCCc
Q psy2161          81 LTDVPILILGNKIDIFDA   98 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~   98 (155)
                        -..+++|.+..|....
T Consensus       116 --~k~~ivvfT~~d~~~~  131 (212)
T PF04548_consen  116 --WKHTIVVFTHADELED  131 (212)
T ss_dssp             --GGGEEEEEEEGGGGTT
T ss_pred             --HhHhhHHhhhcccccc
Confidence              2468999999986553

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1954|consensus

Probab=96.62  E-value=0.007  Score=46.04  Aligned_cols=68  Identities=26%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             EEEEEEEcCCChh-----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          26 IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        26 ~~~~~~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      .+++++||||.-+           |.....=|...+|.|+++||+...+--++....+..+..+    .=.+-+|+||+|
T Consensus       147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKAD  222 (532)
T KOG1954|consen  147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKAD  222 (532)
T ss_pred             hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEecccc
Confidence            4799999999422           3445566778999999999987655445555555555322    347888999999


Q ss_pred             cCC
Q psy2161          95 IFD   97 (155)
Q Consensus        95 l~~   97 (155)
                      ..+
T Consensus       223 qVd  225 (532)
T KOG1954|consen  223 QVD  225 (532)
T ss_pred             ccC
Confidence            643

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.54  E-value=0.063  Score=41.86  Aligned_cols=47  Identities=23%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             HhhcC-CCCEEEEEE-ECC--C--CCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          44 RDYFP-AVDAIVFII-DAS--D--RSRFPES-KYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        44 ~~~~~-~ad~ii~v~-D~~--~--~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      +..+. .++..++|. |.+  +  .+.+... ..++.++.+    .++|+++|+||+|
T Consensus       138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~d  191 (492)
T TIGR02836       138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTH  191 (492)
T ss_pred             HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcC
Confidence            34455 799999888 774  1  2233333 456666642    3799999999999

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=96.43  E-value=0.0099  Score=45.46  Aligned_cols=113  Identities=18%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             EEEEEEEcCCChhhHHhH-----HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC--C-
Q psy2161          26 IVFTTHDLGGHVQARRVW-----RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF--D-   97 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~-----~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~--~-   97 (155)
                      -.+.+||.||.....-..     ..-+..-|.+|++.+    ..|.....++...+...   ++|+.+|-+|+|..  + 
T Consensus        86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~  158 (376)
T PF05049_consen   86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNE  158 (376)
T ss_dssp             TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHH
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHHc---CCcEEEEEecccccHhhh
Confidence            359999999953321112     223557888888763    46766666665554433   68999999999951  1 


Q ss_pred             ------cCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--ChHHHHHHHHhhcC
Q psy2161          98 ------AASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--GFGNGFRWLANYID  155 (155)
Q Consensus        98 ------~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--~i~~~~~~l~~~i~  155 (155)
                            ....    +++++.+...          .+......-.+|.+|+.+-.  ++..+.+.|.+.||
T Consensus       159 ~~~~p~~f~~e~~L~~IR~~c~~~----------L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp  218 (376)
T PF05049_consen  159 RRRKPRTFNEEKLLQEIRENCLEN----------LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP  218 (376)
T ss_dssp             HCC-STT--HHTHHHHHHHHHHHH----------HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred             hccCCcccCHHHHHHHHHHHHHHH----------HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence                  1122    2222222110          00012233468888887644  47777777766553

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.40  E-value=0.032  Score=41.29  Aligned_cols=108  Identities=14%  Similarity=0.111  Sum_probs=66.2

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHH
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASED  102 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~  102 (155)
                      .|+-+.|.+|.|--...--.   ..-||.++++.=..-.+..+.++.=+.++         -=++|+||.|..+ .....
T Consensus       142 aG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r  209 (323)
T COG1703         142 AGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAR  209 (323)
T ss_pred             cCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHH
Confidence            46889999998853222111   23488888887554445555555444444         3478899999655 22333


Q ss_pred             HHHhhhcccCccCCCcccccccccCc--cEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         103 EVRHFFGLYGLTTGKEFTSREILQMR--PIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ++...+....          ......  ..+++.+||.+|+|++++++.+.+.
T Consensus       210 ~l~~al~~~~----------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h  252 (323)
T COG1703         210 ELRSALDLLR----------EVWRENGWRPPVVTTSALEGEGIDELWDAIEDH  252 (323)
T ss_pred             HHHHHHHhhc----------ccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence            4444444310          001112  3369999999999999999988753

>KOG0463|consensus

Probab=96.31  E-value=0.029  Score=42.96  Aligned_cols=118  Identities=20%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE  103 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  103 (155)
                      .-++|+|.+|+++|-...-.-..  -.|..++++-++-. -....+..+...+    .-++|+++|.+|+|++.....++
T Consensus       219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL----aL~VPVfvVVTKIDMCPANiLqE  293 (641)
T KOG0463|consen  219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL----ALHVPVFVVVTKIDMCPANILQE  293 (641)
T ss_pred             eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh----hhcCcEEEEEEeeccCcHHHHHH
Confidence            56899999999987553211111  35667777765421 1111122232222    12689999999999986322222


Q ss_pred             H----HhhhcccCccCCCccccccc-----------ccCccEEEEEeeeccCCChHHHHHHH
Q psy2161         104 V----RHFFGLYGLTTGKEFTSREI-----------LQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus       104 i----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      -    ...+...  ...+.+.+.++           -..+-+++|-+|-.+|.|+.-+...|
T Consensus       294 tmKll~rllkS~--gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  294 TMKLLTRLLKSP--GCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             HHHHHHHHhcCC--CcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            2    2222211  01222222211           12345789999999999987665544

>KOG2423|consensus

Probab=96.09  E-value=0.051  Score=41.91  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=42.8

Q ss_pred             HHhHHhhcC---CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhc
Q psy2161          40 RRVWRDYFP---AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG  109 (155)
Q Consensus        40 ~~~~~~~~~---~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~  109 (155)
                      ...|...|+   .+|++|-|+|+.+|-.-..  ..+++.++. ..+.+..++|+||+||............+.
T Consensus       201 kRIW~ELyKViDSSDVvvqVlDARDPmGTrc--~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lS  270 (572)
T KOG2423|consen  201 KRIWGELYKVIDSSDVVVQVLDARDPMGTRC--KHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLS  270 (572)
T ss_pred             hHHHHHHHHhhcccceeEEeeeccCCccccc--HHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHh
Confidence            345655544   8999999999988743322  234444432 235789999999999976444444444444

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.42  E-value=0.034  Score=39.81  Aligned_cols=69  Identities=19%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             EEECCEEEEEEEc-CCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          21 LSMGDIVFTTHDL-GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        21 ~~~~~~~~~~~Dt-~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      +..+.+.+.+.|| +|-+.|.   +...+++|.+|.|+|.+. .++..+.. +.++.+..  .-+++.+|+||.|-.
T Consensus       129 l~~~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~el--g~k~i~~V~NKv~e~  198 (255)
T COG3640         129 LILNRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEEL--GIKRIFVVLNKVDEE  198 (255)
T ss_pred             HhcccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHh--CCceEEEEEeeccch
Confidence            3345578899998 6766543   344679999999999874 23333222 23332222  148999999999953

>KOG2486|consensus

Probab=95.42  E-value=0.074  Score=39.08  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=60.1

Q ss_pred             CEEEEEEEcCCC----------hhhHHhHHhhcCCCC---EEEEEEECCCC-CchHH-HHHHHHHHHhCCCCCCCcEEEE
Q psy2161          25 DIVFTTHDLGGH----------VQARRVWRDYFPAVD---AIVFIIDASDR-SRFPE-SKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        25 ~~~~~~~Dt~G~----------~~~~~~~~~~~~~ad---~ii~v~D~~~~-~~~~~-~~~~l~~~~~~~~~~~~piilv   89 (155)
                      +.++.+.|.||-          ..+......|+.+-+   -+.+.+|++.+ +..+. ...|+       ...++|+.+|
T Consensus       182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~-------ge~~VP~t~v  254 (320)
T KOG2486|consen  182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL-------GENNVPMTSV  254 (320)
T ss_pred             cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH-------hhcCCCeEEe
Confidence            578999999991          223344555555433   34455676543 22211 12332       2347999999


Q ss_pred             EeCCCcCCcCC---HHHHHhhhc-ccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          90 GNKIDIFDAAS---EDEVRHFFG-LYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        90 ~nK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .||||......   ......... .+++        ......-..+++.+|+.++.|+++++-.++
T Consensus       255 fTK~DK~k~~~~~~kKp~~~i~~~f~~l--------~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  255 FTKCDKQKKVKRTGKKPGLNIKINFQGL--------IRGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             eehhhhhhhccccccCccccceeehhhc--------cccceeccCCceeeecccccCceeeeeehh
Confidence            99999643111   111111111 1111        111222234578999999999998865554

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.22  E-value=0.091  Score=34.40  Aligned_cols=65  Identities=12%  Similarity=0.204  Sum_probs=43.9

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      +.+.++|+|+..  .......++.+|.++++++.+ ..++......++.+....  ...++.+|.|+++.
T Consensus        45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            789999998754  233345688899999999876 344544444555543222  34578899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=95.18  E-value=0.18  Score=41.62  Aligned_cols=77  Identities=6%  Similarity=-0.026  Sum_probs=45.0

Q ss_pred             EEECCEEEEEEEcCCChhh----------HHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC-CCCcEE
Q psy2161          21 LSMGDIVFTTHDLGGHVQA----------RRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDAL-TDVPIL   87 (155)
Q Consensus        21 ~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~-~~~pii   87 (155)
                      ...++.++.++||||-...          ......+++  +.|++|||..++......+-..++..+....+. --..+|
T Consensus       161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tI  240 (763)
T TIGR00993       161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAI  240 (763)
T ss_pred             EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEE
Confidence            3457899999999995431          112233444  589999998875433221222333333221111 124799


Q ss_pred             EEEeCCCcCC
Q psy2161          88 ILGNKIDIFD   97 (155)
Q Consensus        88 lv~nK~Dl~~   97 (155)
                      +|.++.|...
T Consensus       241 VVFThgD~lp  250 (763)
T TIGR00993       241 VTLTHAASAP  250 (763)
T ss_pred             EEEeCCccCC
Confidence            9999999753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01900 YchF YchF subfamily

Probab=95.16  E-value=0.07  Score=39.24  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             cCCCCCceeEEEECCE-----------------EEEEEEcCCChh----hHH---hHHhhcCCCCEEEEEEECC
Q psy2161          11 MPTLHPTSEELSMGDI-----------------VFTTHDLGGHVQ----ARR---VWRDYFPAVDAIVFIIDAS   60 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~-----------------~~~~~Dt~G~~~----~~~---~~~~~~~~ad~ii~v~D~~   60 (155)
                      -+|+.++...+.+.+.                 +++++|+||-..    ...   .....++.+|++++|+|..
T Consensus        30 ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          30 FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             ccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            3566777666666542                 599999999422    122   2333467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0469|consensus

Probab=94.77  E-value=0.096  Score=41.69  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC--C-c
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADDALTDVPILILGNKIDIF--D-A   98 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~--~-~   98 (155)
                      ++-++++|.||+-.|.+.....++-.|+.+.|+|--+.   ++-.    .+...+..+   -+| ++++||.|..  + +
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET----VLrQA~~ER---IkP-vlv~NK~DRAlLELq  168 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET----VLRQAIAER---IKP-VLVMNKMDRALLELQ  168 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH----HHHHHHHhh---ccc-eEEeehhhHHHHhhc
Confidence            48899999999999999999999999999999986432   2222    222222221   245 4568999942  2 5


Q ss_pred             CCHHHHHhhhc
Q psy2161          99 ASEDEVRHFFG  109 (155)
Q Consensus        99 ~~~~~i~~~~~  109 (155)
                      .+.+++-+.+.
T Consensus       169 ~~~EeLyqtf~  179 (842)
T KOG0469|consen  169 LSQEELYQTFQ  179 (842)
T ss_pred             CCHHHHHHHHH
Confidence            56665555443

>KOG2485|consensus

Probab=94.73  E-value=0.11  Score=38.67  Aligned_cols=75  Identities=21%  Similarity=0.319  Sum_probs=49.0

Q ss_pred             EEEEcCCChhh-HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhh
Q psy2161          29 TTHDLGGHVQA-RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHF  107 (155)
Q Consensus        29 ~~~Dt~G~~~~-~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~  107 (155)
                      ..-+.||++.- -...+.-++..|.||=|-|+.-|-+-..  ..+++++     +.+|-|+|.||+||.+......+.+.
T Consensus        25 ~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~   97 (335)
T KOG2485|consen   25 PRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQY   97 (335)
T ss_pred             ccccCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc-----CCCceEEEEecccccCchhhhHHHHH
Confidence            33456787642 2345566889999999999875533322  3455554     26899999999999885444455555


Q ss_pred             hcc
Q psy2161         108 FGL  110 (155)
Q Consensus       108 ~~~  110 (155)
                      ++.
T Consensus        98 ~~~  100 (335)
T KOG2485|consen   98 LEW  100 (335)
T ss_pred             HHh
Confidence            443

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=94.55  E-value=0.19  Score=36.93  Aligned_cols=67  Identities=16%  Similarity=0.135  Sum_probs=39.2

Q ss_pred             CCEEEEEEEcCCChhhHHhH-------Hhhc-----CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          24 GDIVFTTHDLGGHVQARRVW-------RDYF-----PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~-------~~~~-----~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      +++.+.++||||........       ....     ..+|.+++|+|++..  .+... ......+..    .+.-+|.|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence            56899999999975432211       1111     248899999999642  22222 222222111    25678889


Q ss_pred             CCCcCC
Q psy2161          92 KIDIFD   97 (155)
Q Consensus        92 K~Dl~~   97 (155)
                      |.|...
T Consensus       226 KlDe~~  231 (272)
T TIGR00064       226 KLDGTA  231 (272)
T ss_pred             ccCCCC
Confidence            999643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PHA02518 ParA-like protein; Provisional

Probab=94.33  E-value=0.17  Score=35.17  Aligned_cols=68  Identities=7%  Similarity=-0.014  Sum_probs=41.5

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchH---HHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFP---ESKYELDSLLADDALTDVP-ILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~---~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~   96 (155)
                      ..+.+.++||||..  .......+..||.+|+++..+. .++.   ....++..... . ....| ..++.|+.+-.
T Consensus        75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~iv~n~~~~~  146 (211)
T PHA02518         75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQE-V-TDGLPKFAFIISRAIKN  146 (211)
T ss_pred             ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHh-h-CCCCceEEEEEeccCCc
Confidence            34789999999874  4456667788999999987763 2333   33334443321 1 12343 45667876543

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=94.17  E-value=0.32  Score=30.25  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=39.9

Q ss_pred             EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC-CCcEEEEEeC
Q psy2161          27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT-DVPILILGNK   92 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~-~~piilv~nK   92 (155)
                      .+.+.|+|+....  .....+..||.++++++.+. .++.....+++.+.... .. ..++.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLD-YSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence            7899999986543  23345678999999987653 44555555555553322 22 4567788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=93.91  E-value=0.67  Score=34.26  Aligned_cols=43  Identities=16%  Similarity=0.228  Sum_probs=26.2

Q ss_pred             CCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          49 AVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        49 ~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ..|+++|.++++.. .+.... ..+..+ +    ..+++|-|+.|+|...
T Consensus       113 RVH~cLYfI~pt~~-~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen  113 RVHACLYFIPPTGH-GLKPLDIEFMKRL-S----KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             -EEEEEEEE-TTSS-SS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-
T ss_pred             CcceEEEEEcCCCc-cchHHHHHHHHHh-c----ccccEEeEEecccccC
Confidence            57899999998752 333332 333444 2    2478999999999754

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=93.57  E-value=0.26  Score=43.42  Aligned_cols=71  Identities=14%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             EEEEEEEcCCCh--------hhHHhHHhhcC---------CCCEEEEEEECCCCCc-----h----HHHHHHHHHHHhCC
Q psy2161          26 IVFTTHDLGGHV--------QARRVWRDYFP---------AVDAIVFIIDASDRSR-----F----PESKYELDSLLADD   79 (155)
Q Consensus        26 ~~~~~~Dt~G~~--------~~~~~~~~~~~---------~ad~ii~v~D~~~~~~-----~----~~~~~~l~~~~~~~   79 (155)
                      -+-.++||+|..        .....|..++.         ..+|||+++|+++.-.     .    ..++..+.++....
T Consensus       161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l  240 (1169)
T TIGR03348       161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL  240 (1169)
T ss_pred             CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            355699999932        23345655544         5899999999865211     1    23344555554333


Q ss_pred             CCCCCcEEEEEeCCCcCC
Q psy2161          80 ALTDVPILILGNKIDIFD   97 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~   97 (155)
                      . -..||.++.+|+|+..
T Consensus       241 g-~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       241 G-ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             C-CCCCEEEEEecchhhc
Confidence            2 3689999999999863

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=93.48  E-value=0.4  Score=36.09  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=37.5

Q ss_pred             CCEEEEEEEcCCChhhHH----hHHhh--------cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          24 GDIVFTTHDLGGHVQARR----VWRDY--------FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~----~~~~~--------~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      .++.+.++||||......    ....+        -...+..++|+|++..  .+.+... ....+.    -.+.-+|.|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~----~~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEA----VGLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhh----CCCCEEEEE
Confidence            568899999999643211    11111        1246789999999743  2222211 222111    135678899


Q ss_pred             CCCcC
Q psy2161          92 KIDIF   96 (155)
Q Consensus        92 K~Dl~   96 (155)
                      |.|..
T Consensus       268 KlD~t  272 (318)
T PRK10416        268 KLDGT  272 (318)
T ss_pred             CCCCC
Confidence            99953

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=93.40  E-value=0.53  Score=36.01  Aligned_cols=83  Identities=18%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV  104 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i  104 (155)
                      .+.+.++|.|  .-.......++.++|-+++|++.+= -++...++.++.+. ....+..+..+|+||.+.....+..++
T Consensus       217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~-~~r~~~~~p~lv~n~~~~~~~~~~~dl  292 (366)
T COG4963         217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELK-RLRPNDPKPILVLNRVGVPKRPEPSDL  292 (366)
T ss_pred             cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHH-HhCCCCCCceEEeeecCCCCCCCHHHH
Confidence            3779999999  3335667788999999999998753 35566677777774 344567888899999987655556677


Q ss_pred             Hhhhccc
Q psy2161         105 RHFFGLY  111 (155)
Q Consensus       105 ~~~~~~~  111 (155)
                      ...++..
T Consensus       293 ~~~~~i~  299 (366)
T COG4963         293 EEILGIE  299 (366)
T ss_pred             HHHhCCc
Confidence            7766653

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=93.18  E-value=0.48  Score=34.71  Aligned_cols=48  Identities=13%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             CCCEEEEEEECCC-----CC--chH----HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          49 AVDAIVFIIDASD-----RS--RFP----ESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        49 ~ad~ii~v~D~~~-----~~--~~~----~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ..+|||+++|+.+     ..  .+.    .++.-+.++..... ...||.+|+||+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCccc
Confidence            5689999999753     11  121    22334444433222 4689999999999864

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=93.14  E-value=0.37  Score=36.95  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=33.1

Q ss_pred             cCCCCCceeEEEECC-----------------EEEEEEEcCCChh----hHHh---HHhhcCCCCEEEEEEECC
Q psy2161          11 MPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQ----ARRV---WRDYFPAVDAIVFIIDAS   60 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~----~~~~---~~~~~~~ad~ii~v~D~~   60 (155)
                      .+|+.++...+.+.+                 .++++.|+||-..    ...+   ....++.||++++|+|..
T Consensus        34 ftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         34 FCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             cccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            356667666665544                 2699999999422    1222   233467899999999984

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=93.11  E-value=1.2  Score=29.93  Aligned_cols=65  Identities=9%  Similarity=0.004  Sum_probs=42.7

Q ss_pred             EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      .+.++|+|+.....  ....+..+|.++++++.+. .++..+..+++.+.. .  ......+|.|+.+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH-c--CCceEEEEEeCCcccc
Confidence            79999999865332  3344678999999997763 345555555555432 1  2345778999998654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK14974 cell division protein FtsY; Provisional

Probab=93.03  E-value=0.99  Score=34.28  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=37.9

Q ss_pred             CCEEEEEEEcCCChhhH----HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          24 GDIVFTTHDLGGHVQAR----RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~----~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      .++.+.++||+|.....    .......  .+.|.+++|+|++..+........+...       -..--+++||.|...
T Consensus       221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~  293 (336)
T PRK14974        221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADA  293 (336)
T ss_pred             CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCC
Confidence            35679999999975321    1112222  2578999999986543221111111111       124667789999754

>cd03112 CobW_like The function of this protein family is unkown

Probab=92.96  E-value=0.22  Score=33.43  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=36.4

Q ss_pred             CEEEEEEEcCCChhhHHhHHh--------hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          25 DIVFTTHDLGGHVQARRVWRD--------YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~--------~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      +....+.|++|-.........        ..-..+++++++|+............+...+..      -=++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence            467789999997543332221        223588999999986432221111222222221      23558999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=92.12  E-value=0.6  Score=36.65  Aligned_cols=66  Identities=14%  Similarity=0.060  Sum_probs=38.4

Q ss_pred             CCEEEEEEEcCCChhhHH----hHHhh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~----~~~~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      +++.+.++||+|......    ....+  ....+-+++|+|++..+.-.....-+.+.       -.+.-+|+||.|-.
T Consensus       181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~  252 (429)
T TIGR01425       181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH  252 (429)
T ss_pred             CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence            358899999999654321    11121  22578899999986543222221222211       23677888999953

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0448|consensus

Probab=91.96  E-value=0.54  Score=38.72  Aligned_cols=65  Identities=20%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             EEEEEEcCCCh---hhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          27 VFTTHDLGGHV---QARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        27 ~~~~~Dt~G~~---~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      -+.+.|.||-.   ...+....+...+|++|||+.+.+  .+... ++.+...-+.    .+.++++-||+|...
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~~----KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSEE----KPNIFILNNKWDASA  275 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhcc----CCcEEEEechhhhhc
Confidence            58899999953   345566777889999999998754  33222 4444444221    345677778889764

>KOG1486|consensus

Probab=91.82  E-value=0.68  Score=33.86  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHH-------hHHhhcCCCCEEEEEEECCCCCch
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARR-------VWRDYFPAVDAIVFIIDASDRSRF   65 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~D~~~~~~~   65 (155)
                      ...++++|..+++.|.||.-...+       ..-...+.||.++.|.|++.++.-
T Consensus       101 pGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  101 PGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQ  155 (364)
T ss_pred             cceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhH
Confidence            566788999999999998533211       122345689999999999875443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=91.60  E-value=3.3  Score=31.75  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             ccCCCCCceeEEEE--CC--EEEEEEEcCCChh--------------hHHhHHhhcC--------------CCCEEEEEE
Q psy2161          10 HMPTLHPTSEELSM--GD--IVFTTHDLGGHVQ--------------ARRVWRDYFP--------------AVDAIVFII   57 (155)
Q Consensus        10 ~~pT~~~~~~~~~~--~~--~~~~~~Dt~G~~~--------------~~~~~~~~~~--------------~ad~ii~v~   57 (155)
                      +.||+........+  ++  ..+++.||||--.              .......|+.              .+++++|.+
T Consensus        62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI  141 (373)
T COG5019          62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI  141 (373)
T ss_pred             CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence            55777665444444  44  7899999999211              0111111111              578999999


Q ss_pred             ECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          58 DASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        58 D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      .++. +.+..+. ..+..+ +    ..+.+|-|+-|+|+..
T Consensus       142 ~Ptg-h~l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~lT  176 (373)
T COG5019         142 RPTG-HGLKPLDIEAMKRL-S----KRVNLIPVIAKADTLT  176 (373)
T ss_pred             cCCC-CCCCHHHHHHHHHH-h----cccCeeeeeeccccCC
Confidence            8764 3343332 233333 2    2356777778999754

>cd03114 ArgK-like The function of this protein family is unkown

Probab=91.46  E-value=0.56  Score=31.12  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=36.6

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      .++.+.+.||+|..  .. ...++..||-++++...+-.+.+.-.+..+.         ..-=+++.||+|
T Consensus        90 ~~~D~iiIDtaG~~--~~-~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~---------~~~~~~~~~k~~  148 (148)
T cd03114          90 AGFDVIIVETVGVG--QS-EVDIASMADTTVVVMAPGAGDDIQAIKAGIM---------EIADIVVVNKAD  148 (148)
T ss_pred             cCCCEEEEECCccC--hh-hhhHHHhCCEEEEEECCCchhHHHHhhhhHh---------hhcCEEEEeCCC
Confidence            46889999999954  22 2347889999999986652222222221111         223467789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=90.56  E-value=2.2  Score=28.68  Aligned_cols=67  Identities=12%  Similarity=0.105  Sum_probs=39.2

Q ss_pred             CCEEEEEEEcCCChhhH----HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          24 GDIVFTTHDLGGHVQAR----RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~----~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +++.+.+.|++|.....    .....+.  ...+.+++|+|.....   ..........+..   + ..-+|.||.|...
T Consensus        81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~  153 (173)
T cd03115          81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence            45778999999974321    1111111  3489999999985432   2223344443222   2 3667779999754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=89.89  E-value=3.2  Score=28.48  Aligned_cols=86  Identities=15%  Similarity=0.187  Sum_probs=55.7

Q ss_pred             CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCccccccccc
Q psy2161          49 AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQ  126 (155)
Q Consensus        49 ~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  126 (155)
                      ..|.|+|++|.+...++..+..-+..+-... .-++ +.++.+-....+  .+...++.+....                
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f-flGK-VCfl~t~a~~~~~~sv~~~~V~kla~~----------------  125 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF-FLGK-VCFLATNAGRESHCSVHPNEVRKLAAT----------------  125 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhh-hccc-eEEEEcCCCcccccccCHHHHHHHHHH----------------
Confidence            5899999999999999988877766663222 2244 444444444333  5677777777665                


Q ss_pred             CccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         127 MRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                       ...+++.+.-.+..+...+-+.|.+.
T Consensus       126 -y~~plL~~~le~~~~~~~lAqRLL~~  151 (176)
T PF11111_consen  126 -YNSPLLFADLENEEGRTSLAQRLLRM  151 (176)
T ss_pred             -hCCCEEEeecccchHHHHHHHHHHHH
Confidence             34567777777777766666655543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=89.28  E-value=1.9  Score=30.85  Aligned_cols=68  Identities=9%  Similarity=0.107  Sum_probs=43.3

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCCCcEEEEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTDVPILILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~~piilv~nK~D   94 (155)
                      +++.+.++||||...  ......+..||.+|..+..+. ..+......+..+...  ....+.|..++.|.++
T Consensus        82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            458999999999764  444556778999988876642 3343333443333211  1123578889999986

>KOG1487|consensus

Probab=89.19  E-value=0.28  Score=35.93  Aligned_cols=49  Identities=20%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|.+.++||+|-..   .++..-                   -....+.+.+||-.+.|++++++-+.+++
T Consensus       232 Vp~iyvLNkIdsIS---iEELdi-------------------i~~iphavpISA~~~wn~d~lL~~mweyL  280 (358)
T KOG1487|consen  232 VPCIYVLNKIDSIS---IEELDI-------------------IYTIPHAVPISAHTGWNFDKLLEKMWEYL  280 (358)
T ss_pred             eeeeeeecccceee---eeccce-------------------eeeccceeecccccccchHHHHHHHhhcc
Confidence            68999999998532   222211                   12335789999999999999999887765

>KOG0780|consensus

Probab=89.03  E-value=2.3  Score=33.10  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             ECCEEEEEEEcCCChhh-HHhHHhh-----cCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161          23 MGDIVFTTHDLGGHVQA-RRVWRDY-----FPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus        23 ~~~~~~~~~Dt~G~~~~-~~~~~~~-----~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      -+++.+.+.||+|.... .++....     .-+-|-+|||+|++-.+.-+.....+.+.
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            35689999999996442 2222211     12588999999998655544444444433

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=88.79  E-value=1.9  Score=30.67  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=43.3

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +.+.++|+|+..  .......+..||.+++++..+. .++..+...+..+.... ....++-+|.|+.|...
T Consensus       115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~  182 (246)
T TIGR03371       115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR  182 (246)
T ss_pred             CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence            479999999854  3445566778999999997642 33444443333333311 12456778999998643

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=88.60  E-value=4.6  Score=27.08  Aligned_cols=66  Identities=9%  Similarity=0.106  Sum_probs=42.9

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      .++.+.+.|+|+...-..  ...+  ..+|.++++...+ +.+...+..+++.+.+.   .....-+|.|+.+.
T Consensus        66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~  133 (169)
T cd02037          66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF  133 (169)
T ss_pred             CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence            568899999998643222  1222  5789999998765 35566666666666432   12345578899874

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=87.82  E-value=2.1  Score=31.09  Aligned_cols=69  Identities=12%  Similarity=0.102  Sum_probs=39.7

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCc
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDI   95 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl   95 (155)
                      ++.+.+.||+|...... ....+..||.+++++..+ ..++..+...+..+.......+.++ -+|.|+.+.
T Consensus       115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            47899999987643221 222367899999988664 3344444443333321111134443 477899984

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=87.80  E-value=1.9  Score=31.35  Aligned_cols=69  Identities=12%  Similarity=0.100  Sum_probs=40.7

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~D   94 (155)
                      +++.+.++||+|...... ....+..||.+|+++..+ ..++..+...+..+.......+.+++ ++.|+.+
T Consensus       116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~  185 (270)
T PRK13185        116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA  185 (270)
T ss_pred             ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence            358899999987643222 223366799999988653 44455544444433221112345543 7889976

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=87.76  E-value=2.3  Score=25.93  Aligned_cols=45  Identities=13%  Similarity=0.098  Sum_probs=31.0

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD   73 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~   73 (155)
                      +.+.++|+|+.....  ....+..+|.++++++.+ ..++.....+++
T Consensus        40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            678999999875332  235667799999999775 345555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=87.47  E-value=4.7  Score=30.55  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcC--------CCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFP--------AVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~--------~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      +....+++|.|--...+....+..        .-|+++-|+|+...... ......+.+.+.      .-=++++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccC
Confidence            356788999996544443333322        46789999999764332 223344444432      234678999999


Q ss_pred             CCcCCHHHHHhhhc
Q psy2161          96 FDAASEDEVRHFFG  109 (155)
Q Consensus        96 ~~~~~~~~i~~~~~  109 (155)
                      .+......+...+.
T Consensus       158 v~~~~l~~l~~~l~  171 (323)
T COG0523         158 VDAEELEALEARLR  171 (323)
T ss_pred             CCHHHHHHHHHHHH
Confidence            77443444444433

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=86.29  E-value=3.1  Score=29.78  Aligned_cols=64  Identities=13%  Similarity=0.170  Sum_probs=41.6

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      +.+.++|+|+....  .....+..||.+++++..+ ..++..+...++.+.. ..  ..++.++.|+++.
T Consensus       112 ~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~-~~--~~~~~iviN~~~~  175 (261)
T TIGR01968       112 FDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEA-KG--IEKIHLIVNRLRP  175 (261)
T ss_pred             CCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHH-cC--CCceEEEEeCcCc
Confidence            78999999886532  2334466799999998764 3445555555544432 22  2367888999975

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=85.85  E-value=4.4  Score=28.05  Aligned_cols=67  Identities=16%  Similarity=0.053  Sum_probs=41.0

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      .+.+.++|+|..... .......+.+|.+++|++... .+...+...++.+.+ .  ....+-+|+||.+..
T Consensus       127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~-~--~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ-T--GSNFLGVVLNKVDIS  193 (204)
T ss_pred             cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh-C--CCCEEEEEEeCcccc
Confidence            477899999863211 112234457999999998753 344555555444432 1  223567788999864

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=85.05  E-value=2  Score=31.28  Aligned_cols=29  Identities=14%  Similarity=0.094  Sum_probs=25.6

Q ss_pred             CccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         127 MRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ..-.+++..||+++.|++++++.+.+.+|
T Consensus       238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p  266 (268)
T cd04170         238 GLLVPVLCGSALTNIGVRELLDALVHLLP  266 (268)
T ss_pred             CCEEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence            34578999999999999999999998875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=84.03  E-value=5.3  Score=28.41  Aligned_cols=66  Identities=11%  Similarity=0.037  Sum_probs=40.3

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ++.+.++|+|+....  .....+..||.++++++.+- .++.......+.. ...  ......++.|+.+..
T Consensus       108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~-~~~--~~~~~~vv~N~~~~~  173 (251)
T TIGR01969       108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVA-EKL--GTAILGVVLNRVTRD  173 (251)
T ss_pred             hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHH-Hhc--CCceEEEEEECCCch
Confidence            478999999986543  22334557999999998753 3444433333222 222  122456899999863

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>CHL00175 minD septum-site determining protein; Validated

Probab=83.58  E-value=4.4  Score=29.63  Aligned_cols=79  Identities=10%  Similarity=0.100  Sum_probs=46.1

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-----cC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-----AA   99 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-----~~   99 (155)
                      .+.+.++|||+...  ......+..||.+++|++.+ +.++..+...+..+.. ..  ...+-+|.|+.+...     ..
T Consensus       126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~-~~--~~~~~lvvN~~~~~~~~~~~~~  199 (281)
T CHL00175        126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEA-NG--IYNVKLLVNRVRPDMIQANDMM  199 (281)
T ss_pred             CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHH-cC--CCceEEEEeccChhhhhhhccc
Confidence            57899999998653  23334456799999998764 3444444444444432 22  234667889997421     22


Q ss_pred             CHHHHHhhhc
Q psy2161         100 SEDEVRHFFG  109 (155)
Q Consensus       100 ~~~~i~~~~~  109 (155)
                      ...++.+.++
T Consensus       200 ~~~~l~~~~~  209 (281)
T CHL00175        200 SVRDVQEMLG  209 (281)
T ss_pred             cHHHHHHHhC
Confidence            3445555554

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=83.21  E-value=4.1  Score=28.47  Aligned_cols=72  Identities=11%  Similarity=-0.071  Sum_probs=39.0

Q ss_pred             CCEEEEEEEcCCChhhHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC-cEEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV-PILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~-piilv~nK~Dl~   96 (155)
                      +.+.+.++|++|......... ...+.||.++.+++.+. .++..+...++.+.......+. ...++.|+.+..
T Consensus       115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~  188 (212)
T cd02117         115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD  188 (212)
T ss_pred             cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence            358999999987553222211 11247999999987642 2333333333322211111233 355899999853

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>KOG2655|consensus

Probab=82.67  E-value=20  Score=27.68  Aligned_cols=43  Identities=14%  Similarity=0.223  Sum_probs=25.8

Q ss_pred             CCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          49 AVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        49 ~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      .+++++|.+..+. ..+.... ..+..+ .    ..+.+|-|+-|+|...
T Consensus       129 RVH~cLYFI~P~g-hgL~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen  129 RVHCCLYFISPTG-HGLKPLDIEFMKKL-S----KKVNLIPVIAKADTLT  172 (366)
T ss_pred             ceEEEEEEeCCCC-CCCcHhhHHHHHHH-h----ccccccceeeccccCC
Confidence            6889999998763 2333332 223333 1    2456777777999754

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=82.04  E-value=12  Score=27.72  Aligned_cols=76  Identities=14%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             EEEEEEEcC-CChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161          26 IVFTTHDLG-GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV  104 (155)
Q Consensus        26 ~~~~~~Dt~-G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i  104 (155)
                      ..+.+.|+| |.-  -+ .-..+.+||.+++|--.|- -.+...+..++-. ++.   ++|..+|+||.+.-..    ++
T Consensus       164 ~~~~IIDsaaG~g--Cp-Vi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~-~~f---~ip~~iViNr~~~g~s----~i  231 (284)
T COG1149         164 ADLLIIDSAAGTG--CP-VIASLKGADLAILVTEPTP-FGLHDLKRALELV-EHF---GIPTGIVINRYNLGDS----EI  231 (284)
T ss_pred             cceeEEecCCCCC--Ch-HHHhhccCCEEEEEecCCc-cchhHHHHHHHHH-HHh---CCceEEEEecCCCCch----HH
Confidence            367788875 322  11 2234779999999976652 3334444333333 332   7999999999964322    56


Q ss_pred             HhhhcccCc
Q psy2161         105 RHFFGLYGL  113 (155)
Q Consensus       105 ~~~~~~~~~  113 (155)
                      .++...+++
T Consensus       232 e~~~~e~gi  240 (284)
T COG1149         232 EEYCEEEGI  240 (284)
T ss_pred             HHHHHHcCC
Confidence            666665443

>KOG1547|consensus

Probab=81.97  E-value=12  Score=27.39  Aligned_cols=43  Identities=16%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             CCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          49 AVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        49 ~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      .++.++|.+..+. .++..+. ..+..+ .    .-+.++-|+-|.|...
T Consensus       155 RVHcclyFi~ptG-hsLrplDieflkrL-t----~vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  155 RVHCCLYFIPPTG-HSLRPLDIEFLKRL-T----EVVNVVPVIAKADTLT  198 (336)
T ss_pred             eEEEEEEEeCCCC-CccCcccHHHHHHH-h----hhheeeeeEeeccccc
Confidence            5678888887764 3333222 222222 1    1245666777999644

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.94  E-value=9  Score=23.27  Aligned_cols=58  Identities=12%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             CEEEEEE-EcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          25 DIVFTTH-DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        25 ~~~~~~~-Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      |.++... -.+|........+..++.||++|++.|.-+-.....+    .+..   ...++|++.+
T Consensus        23 G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~v----k~~a---kk~~ip~~~~   81 (97)
T PF10087_consen   23 GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKV----KKAA---KKYGIPIIYS   81 (97)
T ss_pred             CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHH----HHHH---HHcCCcEEEE
Confidence            3445555 1123333344577779999999999987653333322    2222   2237898885

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=81.82  E-value=5.2  Score=31.61  Aligned_cols=64  Identities=16%  Similarity=0.056  Sum_probs=35.5

Q ss_pred             EEEEEEEcCCChhhHHh----HH--hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          26 IVFTTHDLGGHVQARRV----WR--DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~----~~--~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ..+.++||+|.......    ..  .....+|.+++|+|++...   ............    -...-+|.||.|-.
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~  245 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT  245 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence            47899999997553221    11  1133688999999986542   111222222110    11345667888853

>PRK10818 cell division inhibitor MinD; Provisional

Probab=81.37  E-value=6.6  Score=28.47  Aligned_cols=69  Identities=13%  Similarity=0.059  Sum_probs=42.6

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC-----CCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD-----DALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~-----~~~~~~piilv~nK~Dl~   96 (155)
                      .+.+.+.|+|+.....  ....+..||.++++++.+ ..++..+...++.+...     ....+.+..++.|+.|..
T Consensus       113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~  186 (270)
T PRK10818        113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG  186 (270)
T ss_pred             CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence            5889999998766433  233457799999998776 34454554555444211     111123457788988854

>TIGR00959 ffh signal recognition particle protein

Probab=81.29  E-value=4.6  Score=31.81  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=35.5

Q ss_pred             CCEEEEEEEcCCChhhHH-------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          24 GDIVFTTHDLGGHVQARR-------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      .++.+.+.||||......       .... .-..+.+++|+|++..+   .............    ...=+|.||.|-
T Consensus       181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~-~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~  251 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQIDEELMEELAAIKE-ILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDG  251 (428)
T ss_pred             cCCCEEEEeCCCccccCHHHHHHHHHHHH-hhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccC
Confidence            457899999999533211       1112 22578899999986432   2222223322111    134556788884

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=81.24  E-value=4.8  Score=29.21  Aligned_cols=71  Identities=17%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~   96 (155)
                      +++.+.++||+|....... ...+..||.+++++..+ ..++..+...+..+.......+.+ ..+|.|+.+..
T Consensus       114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~  185 (268)
T TIGR01281       114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT  185 (268)
T ss_pred             ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence            3588999999875432211 12356799999887543 334444444443332211113444 45788999754

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=80.75  E-value=6.7  Score=29.11  Aligned_cols=69  Identities=13%  Similarity=0.087  Sum_probs=38.6

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCc
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDI   95 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl   95 (155)
                      ++.+.++||+|....... ...+..||.++++++.+ +.++..+...++.+.......+.+ .-++.|+.+.
T Consensus       115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~  184 (290)
T CHL00072        115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK  184 (290)
T ss_pred             cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence            578999999876322222 22356799999988664 334444433333222111122333 3478899874

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=80.74  E-value=2.2  Score=29.04  Aligned_cols=68  Identities=15%  Similarity=0.082  Sum_probs=44.9

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +.+.+.|+|+.....  ....+..+|.+|++++.+. .+......++..+.... .....+-+|.|+.+...
T Consensus        95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~-~~~~~~~vv~N~v~~~~  162 (195)
T PF01656_consen   95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLG-KKLKIIGVVINRVDPGN  162 (195)
T ss_dssp             SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHT-HTEEEEEEEEEEETSCC
T ss_pred             ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhc-cccceEEEEEeeeCCCc
Confidence            778999999865433  5556778999999998864 33555555554443211 11236788999998653

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.28  E-value=3.9  Score=36.29  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             EEEEEEEcCCCh--------hhHHhHHhh---------cCCCCEEEEEEECCCCCc---h------HHHHHHHHHHHhCC
Q psy2161          26 IVFTTHDLGGHV--------QARRVWRDY---------FPAVDAIVFIIDASDRSR---F------PESKYELDSLLADD   79 (155)
Q Consensus        26 ~~~~~~Dt~G~~--------~~~~~~~~~---------~~~ad~ii~v~D~~~~~~---~------~~~~~~l~~~~~~~   79 (155)
                      -+-.++||+|..        .-...|..+         .+.-+|||+.+|+++.-+   -      ..++.-+.++....
T Consensus       174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL  253 (1188)
T COG3523         174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL  253 (1188)
T ss_pred             cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            567889999842        234556644         236889999999865211   1      11223344443222


Q ss_pred             CCCCCcEEEEEeCCCcCC
Q psy2161          80 ALTDVPILILGNKIDIFD   97 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~   97 (155)
                       ....|+.+++||.|+..
T Consensus       254 -~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         254 -HARLPVYLVLTKADLLP  270 (1188)
T ss_pred             -ccCCceEEEEecccccc
Confidence             24689999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		1e-52
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		4e-52
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		6e-52
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		4e-51
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-41
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		5e-41
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		3e-12
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		3e-12
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		5e-12
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-11
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-11
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-11
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		1e-11
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-11
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		2e-11
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		2e-11
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-11
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		4e-11
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-11
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		7e-11
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		8e-11
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		8e-11
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		8e-11
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		8e-11
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		8e-11
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		9e-11
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		9e-11
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		9e-11
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-10
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		1e-10
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-10
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-10
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-10
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-10
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-10
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-10
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-10
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-10
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		5e-10
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		7e-10
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-09
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-09
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-09
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		3e-09
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		8e-09
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-09
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		9e-09
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-08
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-08
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		1e-07
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-07
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-07
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		5e-07

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score =  201 bits (512), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/155 (60%), Positives = 114/155 (73%)
Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct: 54  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 113
Query: 61  DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D SR  ESK E            VPILILGNKID  DA SE+++R  FGLYG TTGK   
Sbjct: 114 DHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 173
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           + + L  RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct: 174 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 208

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score =  199 bits (507), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 113/155 (72%)
Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 41  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 100
Query: 61  DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 101 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 160
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 161 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 195

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score =  199 bits (505), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 113/155 (72%)
Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103
Query: 61  DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score =  196 bits (498), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 112/155 (72%)
Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGG +QARRVW++Y PA++ IVF++D +
Sbjct: 35  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCA 94
Query: 61  DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK E            VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 95  DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 154
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 155 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 189

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  164 bits (414), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLKNDR A   PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+
Sbjct: 42  MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 101
Query: 61  DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  RF E++ E            VP +ILGNKID  +A SE E+R   GL   TTG    
Sbjct: 102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTG---- 156
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
           S+ I   RP+E+FMCSV+ R G+   F+WL+ YI
Sbjct: 157 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  162 bits (411), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 103/153 (67%), Gaps = 5/153 (3%)
Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLKNDR A   PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+
Sbjct: 20  MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 79
Query: 61  DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  RF E++ E            VP +ILGNKID  +A SE E+R   GL   TTG    
Sbjct: 80  DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTG---- 134
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153
           S+ I   RP+E+FMCSV+ R G+   F+WL+ Y
Sbjct: 135 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
           D+GG  + R  WR YF   D ++++ID++DR RF E+  E            VP+LI  N
Sbjct: 67  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 126
Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           K D+  AA   E+     L+             ++ R  ++  CS L  +G  +G  W+ 
Sbjct: 127 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 174
Query: 152 NYID 155
             ++
Sbjct: 175 KNVN 178

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
           D+GG  + R  WR YF   D ++++ID++DR RF E+  E            VP+LI  N
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           K D+  AA   E+     L+             ++ R  ++  CS L  +G  +G  W+ 
Sbjct: 126 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 173
Query: 152 NYID 155
             ++
Sbjct: 174 KNVN 177

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
           D+GG  + R  WR YF   D ++++ID++DR RF E+  E            VP+LI  N
Sbjct: 54  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 113
Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           K D+  AA   E+     L+             ++ R  ++  CS L  +G  +G  W+ 
Sbjct: 114 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 161
Query: 152 NYI 154
             +
Sbjct: 162 KNV 164

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR Y+   + ++F++D++D
Sbjct: 20  LKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSND 79
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           RSR  E++                 L+  NK D+ +A S  E+    GL+          
Sbjct: 80  RSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHS--------- 130
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              ++ RP  +        +G   G  WL+N +
Sbjct: 131 ---IRNRPWFIQATCATSGEGLYEGLEWLSNSL 160

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR Y+   + ++F++D++D
Sbjct: 37  LKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSND 96
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           RSR  E++                 L+  NK D+ +A S  E+    GL+          
Sbjct: 97  RSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHS--------- 147
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              ++ RP  +        +G   G  WL+N +
Sbjct: 148 ---IRNRPWFIQATCATSGEGLYEGLEWLSNCL 177

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR Y+   + ++F++D++D
Sbjct: 37  LKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSND 96
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           RSR  E++                 L+  NK D+ +A S  E+    GL+          
Sbjct: 97  RSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHS--------- 147
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              ++ RP  +        +G   G  WL+N +
Sbjct: 148 ---IRNRPWFIQATCATSGEGLYEGLEWLSNSL 177

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
           D+GG  + R  WR YF   D ++++ID++DR RF E+  E            VP+LI  N
Sbjct: 54  DIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 113
Query: 92  KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
           K D+  AA   E+     L+             ++ R  ++  CS L  +G  +G  W+ 
Sbjct: 114 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 161
Query: 152 NYI 154
             +
Sbjct: 162 KNV 164

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR Y+   + ++F+ID++D
Sbjct: 37  LKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSND 96
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           RSR  E++                 L+  NK D+ +A S  E+    GL+          
Sbjct: 97  RSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHS--------- 147
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
              ++ RP  +        +G   G  WL+N
Sbjct: 148 ---IRNRPWFIQSTCATSGEGLYEGLEWLSN 175

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 19  EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXX 78
           E L   +I F   DLGG    R  WR YF   DA+++++D++DR R   +K+E       
Sbjct: 59  ETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE 118
Query: 79  XXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
                  +LI  NK D+ DAASE E+    G+
Sbjct: 119 DELRKSLLLIFANKQDLPDAASEAEIAEQLGV 150

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 4   NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 63
           N ++   +PT+  + E+     + FT  D+ G  + R +W  Y+    AI+F+ID+SDR 
Sbjct: 45  NAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL 104
Query: 64  RFPESKYEXXXXXXX--XXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R   +K E              +PIL   NK+D+ DA +  +V     L           
Sbjct: 105 RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCL----------- 153
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
            E ++ +P  +     +K +G   G  WL + I
Sbjct: 154 -ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR Y+    AI+F++D++D
Sbjct: 37  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSND 96
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E++ E              +L+  NK D+  A S  EV    GL  +   K +  
Sbjct: 97  RDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQ 156
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
                        C+     G   G  WLA+
Sbjct: 157 TS-----------CAT-NGDGLYEGLDWLAD 175

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E ++  ++ F   DLGG    R  WR Y+   DA+++++D+ DR R   SK 
Sbjct: 31  IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
           E              +++  NK D+  A +  E+ +  GL              L+ R  
Sbjct: 91  ELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPA------------LKDRKW 138
Query: 131 ELFMCSVLKRQGFGNGFRWL 150
           ++F  S  K  G      WL
Sbjct: 139 QIFKTSATKGTGLDEAMEWL 158

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+     +++ G++     D+GG  + R +W  Y   V+AIV++IDA+DR +   S+ 
Sbjct: 52  IPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRN 111
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           E            +P+L+LGNK D+ +A  E ++     L  +
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAI 154

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 33  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 92
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 93  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 141

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 32  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 91
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 92  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 140

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 37  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           R R  E++ E              +L+  NK D+ +A +  E+    GL+ L
Sbjct: 97  RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 36  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 95
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           R R  E++ E              +L+  NK D+ +A +  E+    GL+ L
Sbjct: 96  RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 147

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E ++  ++ F   DLGG    R  WR Y+   DA+++++D+ DR R   SK 
Sbjct: 33  IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
           E              +++  NK D+  A +  E+ +  GL              L+ R  
Sbjct: 93  ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKW 140
Query: 131 ELFMCSVLKRQGFGNGFRWL 150
           ++F  S  K  G      WL
Sbjct: 141 QIFKTSATKGTGLDEAMEWL 160

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++DR R  E++ 
Sbjct: 29  IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           E              +L+  NK D+ +A +  E+    GL+ L
Sbjct: 89  ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 131

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 20  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 79
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 80  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 128

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 20  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 79
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 80  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 128

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 20  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 79
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 80  RDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGL 128

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++DR R  E++ 
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           E              +L+  NK D+ +A +  E+    GL+ L
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 296

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 40  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 99
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E++ E              +L+  NK D+ +A +  E+    GL+          
Sbjct: 100 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--------- 150
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              L+ R   +        +G   G  WL+N I
Sbjct: 151 ---LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E +   +I FT  D+GG  + R +WR Y+   D ++F++D++DR R  +++ 
Sbjct: 46  IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
           E              IL+  NK D+ +A S  EV     L                +R  
Sbjct: 106 ELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLN--------------TIRER 151
Query: 131 ELFMCSVLKRQGFG--NGFRWLANYID 155
             F+ S    +G G   GF WL  +++
Sbjct: 152 NWFIQSTCATRGDGLYEGFDWLTTHLN 178

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+     +++ G++     D+GG  + R +W  Y   V AIV+++DA+D+ +   SK 
Sbjct: 52  IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           E            +P+L+LGNK D+  A  E E+     L  +
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI 154

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 342 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 401
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 402 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 450

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+     +++ G++     D+GG  + R +W  Y   V AIV+++DA+D+ +   SK 
Sbjct: 61  IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 120
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEV 104
           E            +P+L+LGNK D+  A  E E+
Sbjct: 121 ELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKEL 154

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 33  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD 92
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 93  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 141

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 22  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD 81
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 82  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 130

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 23  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD 82
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
           R R  E++ E              ILI  NK D+ DA    E++   GL
Sbjct: 83  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 131

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 22  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSND 81
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           R R  E++ E              +L+  NK D+ +A +  E+    GL+ L
Sbjct: 82  RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 133

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    E LS  ++     DLGG    R  WR Y+    A++F++D++D+ R   +  E
Sbjct: 48  PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
                         +L+  NK D   A S  EV            KE    E L+ R   
Sbjct: 108 LHLMLQEEELQDAALLVFANKQDQPGALSASEV-----------SKELNLVE-LKDRSWS 155
Query: 132 LFMCSVLKRQGFGNGFRWLANYI 154
           +   S +K +G   G  WL + I
Sbjct: 156 IVASSAIKGEGITEGLDWLIDVI 178

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 49  LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 108
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  ES  E              +L+  NK D+ +A    E+    GL           
Sbjct: 109 RERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ---------- 158
Query: 122 REILQMRPIELFMCSVLKRQGFG--NGFRWLAN 152
                +R    ++ +    QG G  +G  WL++
Sbjct: 159 ----HLRSRTWYVQATCATQGTGLYDGLDWLSH 187

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +W+ YF     ++F++D++D
Sbjct: 37  LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSND 96
Query: 62  RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E   E              +L+  NK D+ +A +  E+    GL  L        
Sbjct: 97  RERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL-------- 148
Query: 122 REILQMRPIELFMCSVLKRQGFG--NGFRWLAN 152
                 R    ++ +    QG G   G  WL+N
Sbjct: 149 ------RNRTWYVQATCATQGTGLYEGLDWLSN 175

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
           +PT+    E ++  ++ F   DLGG    R  WR Y+   DA+++++D+ DR R   SK 
Sbjct: 36  IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
Query: 71  EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
           E              +++  NK D   A +  E  +  GL              L+ R  
Sbjct: 96  ELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGL------------PALKDRKW 143
Query: 131 ELFMCSVLKRQGFGNGFRWL 150
           ++F  S  K  G      WL
Sbjct: 144 QIFKTSATKGTGLDEAXEWL 163

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    EE+ + +  F   D+GG    R  W  Y+   + I+ ++D+ DR R   +K E
Sbjct: 46  PTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEE 105
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
                         +LI  NK D+    +  E+  +  L              ++  P  
Sbjct: 106 LYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSS------------IKDHPWH 153
Query: 132 LFMCSVLKRQGFGNGFRWLANYI 154
           +  C  L  +G   G  W+ + I
Sbjct: 154 IQSCCALTGEGLCQGLEWMTSRI 176

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 7   TAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF 65
           +++H+  T+    E    G + FT  D+GG  + R +W  Y+  +DA++F++D+SD  R 
Sbjct: 43  SSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRL 102
Query: 66  PESKYEXXXXXXXX-------XXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKE 118
              K E                   VP L   NK+D   A +  E+     L  L     
Sbjct: 103 CVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL----- 157
Query: 119 FTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150
                 +   P  +F  + LK  G   GF WL
Sbjct: 158 ------MGDHPFVIFASNGLKGTGVHEGFSWL 183

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++DR R   ++ E
Sbjct: 46  PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
                         +LI  NK D+ +  +  E+  F  L              ++     
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 153
Query: 132 LFMCSVLKRQGFGNGFRWL 150
           +  C  L  +G   G  W+
Sbjct: 154 IQACCALTGEGLCQGLEWM 172

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++DR R   ++ E
Sbjct: 52  PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 111
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
                         +LI  NK D+ +  +  E+  F  L              ++     
Sbjct: 112 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 159
Query: 132 LFMCSVLKRQGFGNGFRWL 150
           +  C  L  +G   G  W+
Sbjct: 160 IQACCALTGEGLCQGLEWM 178

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++DR R   ++ E
Sbjct: 46  PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
                         +LI  NK D+ +  +  E+  F  L              ++     
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 153
Query: 132 LFMCSVLKRQGFGNGFRWL 150
           +  C  L  +G   G  W+
Sbjct: 154 IQACCALTGEGLCQGLEWM 172

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++DR R   ++ E
Sbjct: 51  PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 110
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
                         +LI  NK D+ +  +  E+  F  L              ++     
Sbjct: 111 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 158
Query: 132 LFMCSVLKRQGFGNGFRWL 150
           +  C  L  +G   G  W+
Sbjct: 159 IQACCALTGEGLCQGLEWM 177

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PTL    + L          D+GG    R  WR+YF + D +++++D++DR R  + + E
Sbjct: 46  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 105
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
                         +LI  NK D+  A S + +R    L
Sbjct: 106 LQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLEL 144

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PTL    + L          D+GG    R  WR+YF + D +++++D++DR R  + + E
Sbjct: 48  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
                         +LI  NK D+  A S + ++    L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PTL    + L          D+GG    R  WR+YF + D +++++D++DR R  + + E
Sbjct: 48  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
                         +LI  NK D+  A S + ++    L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 146

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PTL    + L          D+GG    R  WR+YF + D +++++D++DR R  + + E
Sbjct: 48  PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRE 107
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
                         +LI  NK D+  A S + ++    L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12  PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
           PTL    + L          D+GG    R  WR+YF + D +++++D++DR R  + + E
Sbjct: 31  PTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 90
Query: 72  XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
                         +LI  NK D+  A S + ++    L
Sbjct: 91  LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	9e-67
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-63
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-47
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-43
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-41
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-41
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-40
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	9e-39
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-38
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-38
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-37
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-36
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-36
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-35
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-32
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-30
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-29
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-22
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	2e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-13
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	4e-12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	9e-10
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	2e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-07
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	3e-07
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	2e-06
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	4e-06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	7e-06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	6e-05
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	1e-04

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  200 bits (511), Expect = 9e-67
 Identities = 97/155 (62%), Positives = 122/155 (78%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 44  MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
           S + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  191 bits (488), Expect = 2e-63
 Identities = 83/154 (53%), Positives = 107/154 (69%), Gaps = 5/154 (3%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           MLKNDR A   PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+
Sbjct: 42  MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 101

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D  RF E++ ELD+L     L DVP +ILGNKID  +A SE E+R   GL   T  +   
Sbjct: 102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
            +     RP+E+FMCSV+ R G+   F+WL+ YI
Sbjct: 162 GQ-----RPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  151 bits (384), Expect = 1e-47
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
            L        +PT+    E L   +I F   DLGG    R  WR YF   DA+++++D++
Sbjct: 41  RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST 100

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR R   +K+EL +LL +D L    +LI  NK D+ DAASE E+    G+  +       
Sbjct: 101 DRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN----- 155

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                  R   +   S     G   G  WL   +
Sbjct: 156 -------RTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  140 bits (355), Expect = 2e-43
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           L+       +PT+    E ++  ++ F   DLGG    R  WR Y+   DA+++++D+ D
Sbjct: 27  LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD 86

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R   SK EL ++L ++ L    +++  NK D+  A +  E+ +  GL  L        
Sbjct: 87  RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD------ 140

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 R  ++F  S  K  G      WL   +
Sbjct: 141 ------RKWQIFKTSATKGTGLDEAMEWLVETL 167

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  135 bits (342), Expect = 2e-41
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           L+        PT+    E LS  ++     DLGG    R  WR Y+    A++F++D++D
Sbjct: 38  LQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD 97

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           + R   +  EL  +L ++ L D  +L+  NK D   A S  EV     L  L        
Sbjct: 98  KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD------ 151

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 R   +   S +K +G   G  WL + I
Sbjct: 152 ------RSWSIVASSAIKGEGITEGLDWLIDVI 178

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  135 bits (342), Expect = 2e-41
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
              +      PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++D
Sbjct: 41  FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 100

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R   ++ EL  +LA + L    +LI  NK D+ +  +  E+  F  L  +        
Sbjct: 101 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD------ 154

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                     +  C  L  +G   G  W+ + +
Sbjct: 155 ------HQWHIQACCALTGEGLCQGLEWMMSRL 181

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  133 bits (336), Expect = 2e-40
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
              +      PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++D
Sbjct: 36  FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R   ++ EL  +LA + L    +LI  NK D+ +  +  E+  F  L  +        
Sbjct: 96  RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD------ 149

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                     +  C  L  +G   G  W+ + +
Sbjct: 150 ------HQWHIQACCALTGEGLCQGLEWMMSRL 176

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  128 bits (325), Expect = 9e-39
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           L ++  +   PT     + +          D+GG  + R  WR YF   D ++++ID++D
Sbjct: 36  LASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R RF E+  EL  LL ++ L+ VP+LI  NK D+  AA   E+     L+ +        
Sbjct: 96  RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD------ 149

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 R  ++  CS L  +G  +G  W+   +
Sbjct: 150 ------RVWQIQSCSALTGEGVQDGMNWVCKNV 176

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  128 bits (323), Expect = 2e-38
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
              N ++   +PT+  + E+     + FT  D+ G  + R +W  Y+    AI+F+ID+S
Sbjct: 42  KPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS 101

Query: 61  DRSRFPESKYELDSLLADDALT--DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKE 118
           DR R   +K ELD+LL    +    +PIL   NK+D+ DA +  +V     L  +     
Sbjct: 102 DRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKD--- 158

Query: 119 FTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                    +P  +     +K +G   G  WL + I
Sbjct: 159 ---------KPWHICASDAIKGEGLQEGVDWLQDQI 185

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  126 bits (318), Expect = 6e-38
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 20  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E++ EL  +LA+D L D  +L+  NK D+ +A +  E+    GL+ L        
Sbjct: 80  RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH------ 133

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 R   +         G   G  WL+N +
Sbjct: 134 ------RNWYIQATCATSGDGLYEGLDWLSNQL 160

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  124 bits (314), Expect = 6e-37
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 49  LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 108

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  ES  EL  +L +D L D  +L+  NK D+ +A    E+    GL  L +      
Sbjct: 109 RERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS------ 162

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 R   +      +  G  +G  WL++ +
Sbjct: 163 ------RTWYVQATCATQGTGLYDGLDWLSHEL 189

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  123 bits (311), Expect = 1e-36
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 2   LKNDRTAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           + + +  + M PT+     +++ G++     D+GG  + R +W  Y   V AIV+++DA+
Sbjct: 42  IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 101

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D+ +   SK EL +LL    L  +P+L+LGNK D+  A  E E+     L  +       
Sbjct: 102 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD----- 156

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                  R I  +  S  ++       +WL  + 
Sbjct: 157 -------REICCYSISCKEKDNIDITLQWLIQHS 183

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  122 bits (309), Expect = 3e-36
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
              +      PTL    + L          D+GG    R  WR+YF + D +++++D++D
Sbjct: 38  FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  + + EL SLL ++ L    +LI  NK D+  A S + ++    L  + +      
Sbjct: 98  RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS------ 151

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                     +  CS +  +    G  WL + I
Sbjct: 152 ------HHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  123 bits (311), Expect = 3e-35
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
            LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++
Sbjct: 184 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 243

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           DR R  E++ EL  +LA+D L D  +L+  NK D+ +A +  E+    GL+ L       
Sbjct: 244 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH----- 298

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                  R   +         G   G  WL+N +
Sbjct: 299 -------RNWYIQATCATSGDGLYEGLDWLSNQL 325

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  107 bits (270), Expect = 2e-30
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP----AVDAIVFI 56
           +L  D     + +  P S     G    T  D  GHV+ R    DY       V  ++F+
Sbjct: 67  LLTTDSVRPTVVSQEPLSAADYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 125

Query: 57  IDAS-DRSRFPESKYELDSLLADDALTD---VPILILGNKIDIFDAASEDEVR 105
           +D++ D  +   +   L  +L+    +    + ILI  NK ++F A    +++
Sbjct: 126 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIK 178

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  105 bits (265), Expect = 2e-29
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP----AVDAIVFI 56
           +L  D     + +  P S     G    T  D  GHV+ R    DY       V  ++F+
Sbjct: 31  LLTTDSVRPTVVSQEPLSAADYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 89

Query: 57  IDAS-DRSRFPESKYELDSLLADDALTD---VPILILGNKIDIFDAASEDEVRH 106
           +D++ D  +   +   L  +L+    +    + ILI  NK ++F A    +++ 
Sbjct: 90  VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 143

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 98.3 bits (245), Expect = 2e-26
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 21/160 (13%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFI 56
            L   +      ++  +S    +        T  DL GH   R ++   +  +  A+VF+
Sbjct: 26  RLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 85

Query: 57  IDASDRSRF-PESKYELDSLLADDALT--DVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
           +D++   R   +    L  +L D         +LI  NK DI  A S   ++        
Sbjct: 86  VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK--- 142

Query: 114 TTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153
                    E+  +R       S L           L   
Sbjct: 143 ---------ELNTLRVTRSAAPSTLD--SSSTAPAQLGKK 171

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 86.3 bits (214), Expect = 4e-22
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 11  MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
              L     E+      F  + + G V      +     VD IVF+ D S  +R   +  
Sbjct: 59  FDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD-SAPNRLRANAE 117

Query: 71  ELDSLLAD-----DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL 125
            + ++  +       L DVPI+I  NK D+ DA   + VR                    
Sbjct: 118 SMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP--------------- 162

Query: 126 QMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 +      + +G     + ++  +
Sbjct: 163 -EGKFPVLEAVATEGKGVFETLKEVSRLV 190

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 19/132 (14%)

Query: 28  FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA----DDALTD 83
                 G         +     VD  +++ +A    R      E   ++A        + 
Sbjct: 104 EGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSG 162

Query: 84  VPILILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142
            P+L+L               + H   L  L               P  +         G
Sbjct: 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTG 209

Query: 143 FGNGFRWLANYI 154
           F NG  W+   +
Sbjct: 210 FLNGIEWILEEV 221

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 2   LKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRD---YFPAVDAIVFII 57
           +  + T     T     +++S    + F   D  G +       D    F    A++++I
Sbjct: 44  MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI 103

Query: 58  DASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105
           DA D      ++  +    A     D+   +  +K+D      + E +
Sbjct: 104 DAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQ 151

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 19/126 (15%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA----DDALTDVPIL 87
             G         +     VD  +++ +A    R      E   ++A        +  P+L
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251

Query: 88  ILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG 146
           +L               + H   L  L               P  +         GF NG
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 298

Query: 147 FRWLAN 152
             W+  
Sbjct: 299 IEWILE 304

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 54.6 bits (131), Expect = 9e-10
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 7/111 (6%)

Query: 2   LKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ-----ARRVWRDYFPAVDAIVF 55
                T +   T+      L   G++     D GG          +     F  V  ++ 
Sbjct: 27  YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH 86

Query: 56  IIDASDRSRFPESKYELDSLLADDAL-TDVPILILGNKIDIFDAASEDEVR 105
           + D        + +    +L        D  I +L +K+D+      +E+ 
Sbjct: 87  VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELF 137

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 10  HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 61
            + T      +  +  + F   D+GG    RR W   F  V AI+F++ +S         
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260

Query: 62  --RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
              +R  E+     S+  +  L  + +++  NK D+ 
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW---RDYFPAVDAIVFIID 58
           ++   T     T +P+ E  S   I     +L G +            F +V A+V++ID
Sbjct: 23  MQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVID 81

Query: 59  ASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105
           + D      +   +    A      + I +L +K+D      + + +
Sbjct: 82  SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQ 128

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 10  HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 61
            +PT         +  ++F   D+GG    RR W   F  V +I+F++  S+        
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210

Query: 62  --RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
              +R  ESK    +++      +  +++  NK D+ 
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 10  HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 61
            + T        +  D+ F   D+GG    R+ W   F  V AI+F +  SD        
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236

Query: 62  --RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
              +R  ES    DS+  +   TD  I++  NK D+F
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 10  HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR------- 62
             PT      +  + ++ F   D+GG    R+ W + F +V +I+F++ +S+        
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244

Query: 63  ---SRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
              +R  ES    ++++ +   ++V I++  NK D+ 
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 32  DLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADDAL 81
           D+GG    RR W   F  V A++F    S+          ++R  E+K   D +L     
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248

Query: 82  TDVPILILGNKIDIF 96
                ++  NK DIF
Sbjct: 249 EKTSFMLFLNKFDIF 263

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 51  DAIVFIIDASDRSRFPESKY--ELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFF 108
           + I++I D S+   FP  +     + +  +    D+P L++ NKID+ D  +   +  F 
Sbjct: 248 NLIIYIFDPSEHCGFPLEEQIHLFEEVHGE--FKDLPFLVVINKIDVADEENIKRLEKFV 305

Query: 109 GLYGLT 114
              GL 
Sbjct: 306 KEKGLN 311

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 18  SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77
              L  G  +  +  L        +   Y     AI+F++ AS     P +  E   L  
Sbjct: 169 LTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----PCTLGERRYLEN 224

Query: 78  DDALTDVPILILGNKIDIFDAASEDEVRH 106
                 + +  L N  D    +  D    
Sbjct: 225 YIKGRGLTVFFLVNAWDQVRESLIDPDDV 253

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.95
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.95
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.95
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.93
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.92
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.92
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.91
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.9
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.9
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.9
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.9
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.9
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.9
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.9
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.9
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.9
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.9
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.9
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.9
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.9
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.9
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.9
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.9
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.9
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.89
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.89
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.89
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.89
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.89
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.89
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.89
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.89
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.89
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.89
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.89
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.89
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.88
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.88
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.88
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.88
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.88
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.88
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.88
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.88
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.88
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.88
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.87
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.87
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.87
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.87
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.87
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.87
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.87
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.87
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.87
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.87
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.87
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.87
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.86
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.86
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.85
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.85
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.74
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.84
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.82
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.81
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.8
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.8
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.8
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.79
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.78
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.78
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.78
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.77
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.76
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.76
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.74
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.72
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.71
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.71
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.71
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.71
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.7
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.7
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.69
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.68
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.68
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.68
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.68
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.67
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.67
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.67
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.67
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.66
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.66
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.66
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.66
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.65
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.64
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.63
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.62
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.62
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.61
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.61
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.6
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.6
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.59
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.59
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.58
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.58
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.57
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.56
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.56
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.55
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.55
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.52
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.52
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.51
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.5
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.49
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.48
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.47
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.47
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.46
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.45
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.44
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.43
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.43
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.43
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.43
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.41
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.34
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.33
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.31
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.27
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.27
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.27
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.23
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.22
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.22
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.17
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.13
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.11
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.09
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.09
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.07
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.06
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.05
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.02
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.01
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.98
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.92
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.9
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.87
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.83
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.76
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.66
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.57
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.54
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.38
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.95
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.61
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.45
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.13
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.02
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.35
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.81
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.63
3end_A	307	Light-independent protochlorophyllide reductase ir	92.39
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	92.16
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	92.0
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	91.57
3cwq_A	209	Para family chromosome partitioning protein; alpha	91.17
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	90.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.4
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	88.63
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	87.53
2xxa_A	433	Signal recognition particle protein; protein trans	87.33
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	86.14
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	85.83
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	85.82
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	81.47
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	81.3
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	81.18
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	80.75
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	80.58

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=8.2e-29  Score=171.44  Aligned_cols=154  Identities=62%  Similarity=1.101  Sum_probs=117.9

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||++.+...+.++++++++|||||++.++..+..+++++|++++|+|++++.+|..+..|+..+++....
T Consensus        45 l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~  124 (198)
T 1f6b_A           45 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI  124 (198)
T ss_dssp             HSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             HhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc
Confidence            45667778899999999999999999999999999999999999999999999999999999999999999998765445


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      .++|+++|+||+|+.+..+.+++.+.+.....+..+............+.+++|||++|.|++++|++|.+.+.
T Consensus       125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~  198 (198)
T 1f6b_A          125 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID  198 (198)
T ss_dssp             TTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            67999999999999877778888887765332222221111222235689999999999999999999998763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=5e-28  Score=165.19  Aligned_cols=141  Identities=30%  Similarity=0.588  Sum_probs=120.2

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++.+..+.||.|++...+.++++++++|||||++.++..|..+++++|++++|+|++++.++.....|+..++.....
T Consensus        36 l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  115 (181)
T 1fzq_A           36 LASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL  115 (181)
T ss_dssp             HCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGG
T ss_pred             HhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhh
Confidence            45566777899999988899999999999999999999999999999999999999999999999999999888765445


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++|+||+|+.+....+++.+.+...            .+....+.+++|||++|.|++++|+++.+.+
T Consensus       116 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          116 SCVPVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cCCCEEEEEECcCcccCCCHHHHHHHhCch------------hccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence            679999999999998766666666655431            1334567899999999999999999998765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=7.6e-28  Score=161.05  Aligned_cols=139  Identities=30%  Similarity=0.565  Sum_probs=118.5

Q ss_pred             CCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           4 NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         4 ~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ++++..+.||++.....+..+++++++|||||++.++..+..+++++|++++|+|++++.++.....|+..++......+
T Consensus        22 ~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  101 (164)
T 1r8s_A           22 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD  101 (164)
T ss_dssp             HHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             cCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcC
Confidence            45566788999988888888889999999999999999999999999999999999999999999999998876555567


Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+.....++...+..            ..+....+++++|||++|.|++++++++.+.+
T Consensus       102 ~piilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          102 AVLLVFANKQDLPNAMNAAEITDKLGL------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             CeEEEEEECcCCcCCCCHHHHHHHhCc------------ccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            999999999999876666666665543            11334567899999999999999999998765

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=9.9e-29  Score=173.42  Aligned_cols=134  Identities=21%  Similarity=0.229  Sum_probs=104.9

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++++ ..+.||+|..  ...+..++  +++++|||+|+++|+.+++.|+++++++++|||++++.+|+.+..|+..+..
T Consensus        34 ~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~  113 (216)
T 4dkx_A           34 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT  113 (216)
T ss_dssp             HHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHH
Confidence            34553 5788999975  45556655  8999999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ..+.|++||+||+|+.+  .++.++..++...                 .++.+++|||++|.||+++|+.|++.+
T Consensus       114 ~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~~~e~SAktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          114 ER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             HH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred             hc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHH-----------------hCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence            43 35789999999999976  5677777766655                 346899999999999999999998765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.95  E-value=1.7e-27  Score=163.70  Aligned_cols=148  Identities=57%  Similarity=0.987  Sum_probs=122.4

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||.+.....+.++++++++|||||++.++..+..+++++|++++|+|++++.+++....|+..+++....
T Consensus        43 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  122 (190)
T 1m2o_B           43 LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL  122 (190)
T ss_dssp             HHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             HhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhh
Confidence            34556778899999999999999999999999999999999999999999999999999999999999999998765444


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+..+.+++.+.++... ...++.    ......+.+++|||++|.|++++|++|.+.+
T Consensus       123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          123 KDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR----IEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-------CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc----ccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence            6799999999999987777788877766521 111111    0223567899999999999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.9e-27  Score=162.80  Aligned_cols=141  Identities=23%  Similarity=0.534  Sum_probs=117.0

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||+|.....+.++++++++|||||++.++..+..+++++|++++|+|++++.+++....|+..++.....
T Consensus        36 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~  115 (187)
T 1zj6_A           36 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL  115 (187)
T ss_dssp             HHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGG
T ss_pred             HhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhh
Confidence            34566668899999999999999999999999999999999999999999999999999999999999999999865434


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++|+||+|+.+.....++.+.+...            .+...++.+++|||++|.|+++++++|.+.+
T Consensus       116 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          116 RKAGLLIFANKQDVKECMTVAEISQFLKLT------------SIKDHQWHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHHTGG------------GCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CCCeEEEEEECCCCcCCCCHHHHHHHhChh------------hhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence            679999999999998766677777666541            1334568999999999999999999998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.95  E-value=4e-27  Score=158.41  Aligned_cols=140  Identities=28%  Similarity=0.537  Sum_probs=119.8

Q ss_pred             CCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           3 KNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      .++.+..+.||.|.....+.+++.++++|||||+..+...+..+++++|++++|+|++++.++.....|+..++......
T Consensus        28 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~  107 (171)
T 1upt_A           28 QVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR  107 (171)
T ss_dssp             HHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGT
T ss_pred             hcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhC
Confidence            35566778999999889999999999999999999999999999999999999999999999999999998887654446


Q ss_pred             CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+.+.....++...+...            .+...++.+++|||++|.|++++++++.+.+
T Consensus       108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          108 KAILVVFANKQDMEQAMTSSEMANSLGLP------------ALKDRKWQIFKTSATKGTGLDEAMEWLVETL  167 (171)
T ss_dssp             TCEEEEEEECTTSTTCCCHHHHHHHHTGG------------GCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCcCCCCHHHHHHHhCch------------hccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence            79999999999998766666666665431            1334567999999999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.95  E-value=2.5e-27  Score=161.43  Aligned_cols=141  Identities=23%  Similarity=0.534  Sum_probs=120.4

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||.|.....+.++++++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..++.....
T Consensus        41 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~  120 (181)
T 2h17_A           41 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL  120 (181)
T ss_dssp             HHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGG
T ss_pred             HhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh
Confidence            34566677889999999999999999999999999999999999999999999999999999999999999988765434


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+.....++.+.+...            .+...++.+++|||++|.|++++|++|.+.+
T Consensus       121 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  181 (181)
T 2h17_A          121 RKAGLLIFANKQDVKECMTVAEISQFLKLT------------SIKDHQWHIQACCALTGEGLCQGLEWMMSRL  181 (181)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred             CCCeEEEEEECCCcccCCCHHHHHHHhCcc------------cccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence            679999999999998766677777766541            2334567999999999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.95  E-value=5.8e-27  Score=160.03  Aligned_cols=141  Identities=26%  Similarity=0.515  Sum_probs=120.3

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.+++...+.||+|.....+.++++++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..++.....
T Consensus        38 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~  117 (186)
T 1ksh_A           38 FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL  117 (186)
T ss_dssp             HTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             HhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhc
Confidence            34555778899999988899999999999999999999999999999999999999999999999999999988766445


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++|+||+|+.+.....++.+.+..            ..+...++++++|||++|.|++++++++.+.+
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          118 AGATLLIFANKQDLPGALSCNAIQEALEL------------DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  178 (186)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCccCCCCCCHHHHHHHhCh------------hhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            67999999999999876666666666553            11234567999999999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=5.4e-27  Score=160.64  Aligned_cols=142  Identities=33%  Similarity=0.553  Sum_probs=121.9

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      +|.++++..+.||+|.....+.++++++++|||||++.++..+..+++++|++++|+|+++++++.....|+..++....
T Consensus        41 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  120 (189)
T 2x77_A           41 RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE  120 (189)
T ss_dssp             HTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST
T ss_pred             HHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence            35667777889999999999999999999999999999999999999999999999999999999999999998887655


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++|+++|+||+|+.+.....++...+...            .+...++.+++|||++|.|++++++++.+.+
T Consensus       121 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          121 LRKSLLLIFANKQDLPDAASEAEIAEQLGVS------------SIMNRTWTIVKSSSKTGDGLVEGMDWLVERL  182 (189)
T ss_dssp             TTTCEEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEECCCCcCCCCHHHHHHHhChh------------hccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence            5689999999999998766666666655431            2334567999999999999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.95  E-value=2.6e-27  Score=163.04  Aligned_cols=141  Identities=30%  Similarity=0.559  Sum_probs=116.0

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||++.....+..+++++++|||||++.++..+..+++++|++++|+|++++.+++.+..|+..++.....
T Consensus        49 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~  128 (192)
T 2b6h_A           49 LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL  128 (192)
T ss_dssp             HCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             HHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccccc
Confidence            45667778899999888889999999999999999999999999999999999999999999999999999998765545


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++|+||+|+.+.....++...+...            .....++.+++|||++|.|+++++++|.+.+
T Consensus       129 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          129 RDAVLLVFANKQDMPNAMPVSELTDKLGLQ------------HLRSRTWYVQATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHTTGG------------GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCCCCCCHHHHHHHhCcc------------cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence            679999999999998766666776665541            1334567899999999999999999998865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=1e-26  Score=158.25  Aligned_cols=141  Identities=30%  Similarity=0.539  Sum_probs=117.9

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||+|.....+.+++.++.+|||||+..+...+..+++++|++++|+|++++.+++....|+..++.....
T Consensus        38 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~  117 (183)
T 1moz_A           38 LQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL  117 (183)
T ss_dssp             TCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTT
T ss_pred             HhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhh
Confidence            55666778899999999999999999999999999999999999999999999999999999999999999998765545


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++|+||+|+.+.....++.+.+...            ......+.+++|||++|.|++++++++.+.+
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          118 QDAALLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             SSCEEEEEEECTTSTTCCCHHHHHHHTTTT------------TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             CCCeEEEEEECCCCCCCCCHHHHHHHhCcc------------cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            689999999999998766777777766542            1233567899999999999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=158.13  Aligned_cols=141  Identities=31%  Similarity=0.589  Sum_probs=120.5

Q ss_pred             CCCCC--CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           2 LKNDR--TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         2 l~~~~--~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      |.++.  ...+.||++.....+.++++++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..++...
T Consensus        41 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~  120 (190)
T 2h57_A           41 LKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP  120 (190)
T ss_dssp             TSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST
T ss_pred             HhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence            44554  4678899999889999999999999999999999999999999999999999999999999999999888765


Q ss_pred             CC--CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 AL--TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~--~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  .++|+++|+||+|+.+....+++.+.+...            .+...++.+++|||++|.|+++++++|.+.+
T Consensus       121 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLE------------NIKDKPWHICASDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             TTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGG------------GCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             hhccCCCeEEEEEeCcCcccCCCHHHHHHHhChh------------hccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            44  579999999999998776777777766531            1333568999999999999999999998765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.94  E-value=3.4e-26  Score=156.79  Aligned_cols=139  Identities=29%  Similarity=0.515  Sum_probs=117.2

Q ss_pred             CCCC-CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           4 NDRT-AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         4 ~~~~-~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ++++ ..+.||++.....+..+++.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..++......
T Consensus        44 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~  123 (188)
T 1zd9_A           44 SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ  123 (188)
T ss_dssp             HSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             cCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccC
Confidence            3444 467899999988888889999999999999999999999999999999999999999999999999887654446


Q ss_pred             CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+.+.....++...+...            ......+.+++|||++|.|++++|++|.+.+
T Consensus       124 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          124 GIPVLVLGNKRDLPGALDEKELIEKMNLS------------AIQDREICCYSISCKEKDNIDITLQWLIQHS  183 (188)
T ss_dssp             TCCEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCccCCCHHHHHHHhChh------------hhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999998765666666655431            1233567899999999999999999999865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.94  E-value=1.4e-26  Score=159.39  Aligned_cols=141  Identities=29%  Similarity=0.565  Sum_probs=116.8

Q ss_pred             CCCCCCC--cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           2 LKNDRTA--QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         2 l~~~~~~--~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      |.++.+.  .+.||+|.....++..++.+++|||||++.+...+..+++++|++|+|+|++++.+|..+..|+..++...
T Consensus        37 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~  116 (199)
T 4bas_A           37 VKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHE  116 (199)
T ss_dssp             HSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSH
T ss_pred             HhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhCh
Confidence            3445543  46899999888888888999999999999999999999999999999999999999999999999887542


Q ss_pred             CC-------CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc-cCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          80 AL-------TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        80 ~~-------~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      ..       .++|+++|+||+|+.+.....++...+...            .. ....+.+++|||++|.|++++|++|.
T Consensus       117 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (199)
T 4bas_A          117 DIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT------------TLMGDHPFVIFASNGLKGTGVHEGFSWLQ  184 (199)
T ss_dssp             HHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH------------HHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             hhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch------------hhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence            21       278999999999998776667776666541            11 34678999999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       185 ~~~  187 (199)
T 4bas_A          185 ETA  187 (199)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=164.49  Aligned_cols=142  Identities=31%  Similarity=0.561  Sum_probs=118.9

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||.++.+....||++.....+..+++++++|||||++.+...+..+++++|++|+|||++++.+|..+..|+..++....
T Consensus       184 ~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~  263 (329)
T 3o47_A          184 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE  263 (329)
T ss_dssp             HTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG
T ss_pred             HHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc
Confidence            35667777778999999999999999999999999999999999999999999999999999999999989988876655


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++|+++|+||+|+.+.....++...+...            ......+.+++|||++|.|++++|++|.+.+
T Consensus       264 ~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          264 LRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             GTTCEEEEEEECTTSTTCCCHHHHHHHHTCT------------TCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEECccCCcccCHHHHHHHhchh------------hhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence            5689999999999998877777777776652            2344678999999999999999999998865

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.92  E-value=1.8e-24  Score=144.80  Aligned_cols=135  Identities=18%  Similarity=0.166  Sum_probs=87.0

Q ss_pred             CCCCCCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           3 KNDRTAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      .+.....+.||.|.. ...+.+++  +.+.+|||||+..+...+..+++.+|++++|+|++++.+++.+..|+..+....
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  102 (166)
T 3q72_A           23 GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR  102 (166)
T ss_dssp             CCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC
T ss_pred             cCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            344555666777775 44556665  789999999999999999999999999999999999999999999999988765


Q ss_pred             CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...++|+++|+||+|+.+  .+..++.......                 .++++++|||++|.|++++|+++.+.+
T Consensus       103 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          103 QTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-----------------FDCKFIETSAALHHNVQALFEGVVRQI  162 (166)
T ss_dssp             ---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-----------------TTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccCHHHHHHHHHH-----------------hCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence            567899999999999875  4455555444433                 346899999999999999999998764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.92  E-value=3.2e-25  Score=165.43  Aligned_cols=136  Identities=24%  Similarity=0.372  Sum_probs=110.2

Q ss_pred             cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhC
Q psy2161           9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLAD   78 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~   78 (155)
                      .+.||+|++...+.++++++++|||||+++++..|.+||++++++|||+|+++          .+++.+...|+..+.++
T Consensus       176 ~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             CCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             ccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            35689999888999999999999999999999999999999999999999998          56789999999999876


Q ss_pred             CCCCCCcEEEEEeCCCcCC-c----------------CCHHHHHhhhcccCccCCCcccccccc----cCccEEEEEeee
Q psy2161          79 DALTDVPILILGNKIDIFD-A----------------ASEDEVRHFFGLYGLTTGKEFTSREIL----QMRPIELFMCSV  137 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~-~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa  137 (155)
                      ....+.|++|++||+|+.. .                .+.++...++...          +..+    ....+.+++|||
T Consensus       256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~----------f~~l~~~~~~~~~~~~etSA  325 (353)
T 1cip_A          256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQ----------FEDLNKRKDTKEIYTHFTCA  325 (353)
T ss_dssp             GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHH----------HHTTCSCTTTCCEEEEECCT
T ss_pred             ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHH----------HHHhhcccCCCceEEEEEEC
Confidence            6667899999999999853 1                2334444433210          0001    135789999999


Q ss_pred             ccCCChHHHHHHHHhhc
Q psy2161         138 LKRQGFGNGFRWLANYI  154 (155)
Q Consensus       138 ~~~~~i~~~~~~l~~~i  154 (155)
                      ++|.||.++|+++.+.+
T Consensus       326 ~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          326 TDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHH
Confidence            99999999999998753

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.91  E-value=5.8e-25  Score=162.19  Aligned_cols=145  Identities=19%  Similarity=0.312  Sum_probs=111.9

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~~~~~   79 (155)
                      +.||+|+....++.+++++++|||+||+++++.|.+||++++++|||+|++          +.+++.+...|+..+.++.
T Consensus       151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~  230 (327)
T 3ohm_A          151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP  230 (327)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred             cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence            579999999999999999999999999999999999999999999999665          6788888999999998877


Q ss_pred             CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCccccc----------ccccCccEEEEEeeeccCCChHHHHH
Q psy2161          80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSR----------EILQMRPIELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~~~~i~~~~~  148 (155)
                      ...+.|++|++||+|+.+ .+....+...++.++++........          .......+.++++||+++.||.++|.
T Consensus       231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~  310 (327)
T 3ohm_A          231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA  310 (327)
T ss_dssp             GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence            677899999999999865 2222223333333332211111110          11234678899999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      .+.+.|
T Consensus       311 ~v~~~I  316 (327)
T 3ohm_A          311 AVKDTI  316 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=142.75  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=97.7

Q ss_pred             CCCCCCcccCCCCCc--eeEEEECC--EEEEEEEcCCChh--hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           3 KNDRTAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ--ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~--~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      .++......||.|.+  ...+.+++  +++.+|||||+..  +...+..+++.+|++++|+|++++.+++.+..|+..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~  104 (175)
T 2nzj_A           25 AGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLR  104 (175)
T ss_dssp             HCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             hcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            445555566777775  55667776  6899999999987  56778889999999999999999999999999988887


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ......++|+++|+||+|+.+  .+..++.......                 .++++++|||++|.|++++|++|.+.+
T Consensus       105 ~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          105 RTHQADHVPIILVGNKADLARCREVSVEEGRACAVV-----------------FDCKFIETSATLQHNVAELFEGVVRQL  167 (175)
T ss_dssp             HCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------HTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH-----------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            654456799999999999975  3444544443332                 245899999999999999999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.91  E-value=1e-23  Score=146.02  Aligned_cols=129  Identities=16%  Similarity=0.231  Sum_probs=101.4

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||++..  ...+.+++  +++++|||||++.+...+..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        56 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~  134 (201)
T 2hup_A           56 ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSN  134 (201)
T ss_dssp             ---------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4677898864  56777777  799999999999999999999999999999999999999999999998886543 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+..+++.+....                 .++ .+++|||++|.|++++|++|.+.+
T Consensus       135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~SA~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          135 IVQLLIGNKSDLSELREVSLAEAQSLAEH-----------------YDILCAIETSAKDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCccccccccCHHHHHHHHHH-----------------cCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999975  4566666665544                 245 899999999999999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.91  E-value=1.8e-24  Score=148.43  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=102.4

Q ss_pred             ccCCCCCceeEE---EEC--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC------CCCchHHHHHHHHHHHhC
Q psy2161          10 HMPTLHPTSEEL---SMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS------DRSRFPESKYELDSLLAD   78 (155)
Q Consensus        10 ~~pT~~~~~~~~---~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~------~~~~~~~~~~~l~~~~~~   78 (155)
                      +.||+|.+....   ..+  ++++++|||||++.+...+..+++++|++++|||++      +..++..+..|+.++.  
T Consensus        53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--  130 (198)
T 3t1o_A           53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--  130 (198)
T ss_dssp             SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--
T ss_pred             cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--
Confidence            456777653332   222  389999999999999999999999999999999999      4456677777887773  


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....++|+++|+||+|+.+....+++.+.+..                 .++ .+++|||++|.|++++|++|.+.+
T Consensus       131 ~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~i  190 (198)
T 3t1o_A          131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-----------------EGKFPVLEAVATEGKGVFETLKEVSRLV  190 (198)
T ss_dssp             CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----------------TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----------------cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence            23468999999999999888888888887765                 345 799999999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=2.6e-24  Score=146.36  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=92.9

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++.+ ..+.||++..  ...+.+++  +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.
T Consensus        28 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  107 (183)
T 2fu5_C           28 FSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE  107 (183)
T ss_dssp             --------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            444443 4677888864  55677777  899999999999999999999999999999999999999999989998886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ..+.|+++|+||+|+.+  .+..+++......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       108 ~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          108 EHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD-----------------YGIKFMETSAKANINVENAFFTLARDI  169 (183)
T ss_dssp             HHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----------------HTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred             Hhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            532 34789999999999975  3455666555443                 346899999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.90  E-value=8.1e-24  Score=144.70  Aligned_cols=126  Identities=16%  Similarity=0.224  Sum_probs=102.6

Q ss_pred             CcccCCCCCceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161           8 AQHMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP   85 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p   85 (155)
                      ..+.||.+.....+.+++  +.+++|||+|++.++     +++++|++++|||++++.+|+.+..|+..+.......+.|
T Consensus        47 ~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  121 (184)
T 3ihw_A           47 QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP  121 (184)
T ss_dssp             CCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC
T ss_pred             CCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            457788666677788887  788999999998877     7788999999999999999999999999997655446789


Q ss_pred             EEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          86 ILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        86 iilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++|+||+|+.+    .+..+++.......                ..+.+++|||++|.|++++|+++.+.+
T Consensus       122 iilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~gv~~lf~~l~~~i  178 (184)
T 3ihw_A          122 MVLVGTQDAISAANPRVIDDSRARKLSTDL----------------KRCTYYETCATYGLNVERVFQDVAQKV  178 (184)
T ss_dssp             EEEEEECTTCBTTBCCCSCHHHHHHHHHHT----------------TTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEEEECcccccccccccCHHHHHHHHHHc----------------CCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            999999999842    45666666655441                136899999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=3.3e-23  Score=141.95  Aligned_cols=130  Identities=18%  Similarity=0.265  Sum_probs=107.6

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.......+
T Consensus        42 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  121 (195)
T 1x3s_A           42 PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND  121 (195)
T ss_dssp             TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSC
T ss_pred             ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC
Confidence            4677888865  45666665  8999999999999999999999999999999999999999999999999876554567


Q ss_pred             CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+ .+...+.......                 .++.++++||++|.|++++|++|.+.+
T Consensus       122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (195)
T 1x3s_A          122 IVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFIEASAKTCDGVQCAFEELVEKI  176 (195)
T ss_dssp             CEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECCcCcccccCHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999965 4455555554443                 346899999999999999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.90  E-value=1.2e-23  Score=145.47  Aligned_cols=130  Identities=14%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             CcccCCCCC--ceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-
Q psy2161           8 AQHMPTLHP--TSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-   80 (155)
Q Consensus         8 ~~~~pT~~~--~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-   80 (155)
                      ..+.||.+.  ....+.++    .+.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+..... 
T Consensus        49 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  128 (208)
T 2yc2_C           49 KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD  128 (208)
T ss_dssp             ------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence            477899984  46777777    47999999999999999999999999999999999999999999999988875433 


Q ss_pred             -CCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc-CCChHHHHHHHHhhc
Q psy2161          81 -LTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK-RQGFGNGFRWLANYI  154 (155)
Q Consensus        81 -~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~l~~~i  154 (155)
                       ..++|+++|+||+|+.+   .+..+++......                 .++.+++|||++ |.|++++|+++.+.+
T Consensus       129 ~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----------------NTLDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             TTSCCEEEEEEECC-------CCCHHHHHHHHHH-----------------TTCEEEECCC-------CHHHHHHHHHH
T ss_pred             cccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----------------cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence             25789999999999865   4455666665544                 246899999999 999999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.90  E-value=1e-23  Score=143.11  Aligned_cols=131  Identities=17%  Similarity=0.180  Sum_probs=107.6

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+.. ...+..++  +.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.......+
T Consensus        32 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (181)
T 3t5g_A           32 VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ  111 (181)
T ss_dssp             CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----
T ss_pred             CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45677888876 55566776  7889999999999999999999999999999999999999999999988876655568


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+..++.......                 .++.++++||++|.|++++|+++.+.+
T Consensus       112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~~  167 (181)
T 3t5g_A          112 IPIMLVGNKKDLHMERVISYEEGKALAES-----------------WNAAFLESSAKENQTAVDVFRRIILEA  167 (181)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccchhcceecHHHHHHHHHH-----------------hCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            99999999999864  4566666665554                 345899999999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.90  E-value=2.4e-23  Score=139.10  Aligned_cols=130  Identities=18%  Similarity=0.255  Sum_probs=104.7

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+.......++
T Consensus        31 ~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  110 (168)
T 1u8z_A           31 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV  110 (168)
T ss_dssp             SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4667888775 34566666  78999999999999999999999999999999999999999999999888765544579


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  ....+++......                 .+++++++||++|.|++++|+++.+.+
T Consensus       111 piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          111 PFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            9999999999865  4455566555543                 345899999999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.90  E-value=1.1e-22  Score=137.92  Aligned_cols=129  Identities=17%  Similarity=0.289  Sum_probs=106.7

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||++..  ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  117 (181)
T 2efe_B           39 EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPN  117 (181)
T ss_dssp             TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred             CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4566888875  45566665  799999999999999999999999999999999999999999999998886543 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..+++......                 .++.++++||++|.|+++++++|.+.+
T Consensus       118 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (181)
T 2efe_B          118 MVMALAGNKSDLLDARKVTAEDAQTYAQE-----------------NGLFFMETSAKTATNVKEIFYEIARRL  173 (181)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred             CcEEEEEECCcccccccCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999965  4455666655544                 346899999999999999999998865

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.90  E-value=4.4e-24  Score=159.81  Aligned_cols=138  Identities=21%  Similarity=0.404  Sum_probs=100.8

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~~   79 (155)
                      +.||+|+....+.++++++++|||||+++++..|.+||++++++|||+|+++          .+++.+...|+..+.+..
T Consensus       185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~  264 (362)
T 1zcb_A          185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  264 (362)
T ss_dssp             CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence            4578898888899999999999999999999999999999999999999998          678999999999998766


Q ss_pred             CCCCCcEEEEEeCCCcCC-c-----------------CCHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccC
Q psy2161          80 ALTDVPILILGNKIDIFD-A-----------------ASEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKR  140 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~-~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  140 (155)
                      ...+.|++|++||+|+.+ .                 .+.++...++...      +. ...... ...+.+++|||++|
T Consensus       265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~------f~-~l~~~~~~~~~~~~~tSA~d~  337 (362)
T 1zcb_A          265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC------FR-GKRRDQQQRPLYHHFTTAINT  337 (362)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH------HH-TTCSSCC--CCEEEECCTTCH
T ss_pred             hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHH------HH-HhhcccCCCceEEEEEecCCc
Confidence            667899999999999853 1                 2333333332100      00 000001 34678999999999


Q ss_pred             CChHHHHHHHHhhc
Q psy2161         141 QGFGNGFRWLANYI  154 (155)
Q Consensus       141 ~~i~~~~~~l~~~i  154 (155)
                      .|+.++|+++.+.+
T Consensus       338 ~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          338 ENIRLVFRDVKDTI  351 (362)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.90  E-value=8.4e-23  Score=136.79  Aligned_cols=130  Identities=16%  Similarity=0.258  Sum_probs=106.2

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  111 (170)
T 1r2q_A           33 EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPN  111 (170)
T ss_dssp             TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4567888875  45566654  899999999999999999999999999999999999999999999998886543 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      .|+++|+||+|+.+  ....++.......                 .++.++++||++|.|+++++++|.+.+.
T Consensus       112 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          112 IVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             CcEEEEEECccCccccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            89999999999865  3445555554433                 3468999999999999999999998763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.5e-23  Score=142.03  Aligned_cols=129  Identities=16%  Similarity=0.267  Sum_probs=97.1

Q ss_pred             CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+...  ..+..++  +.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+..... .+
T Consensus        38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~  116 (180)
T 2g6b_A           38 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HD  116 (180)
T ss_dssp             CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TT
T ss_pred             CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CC
Confidence            36778998863  3446666  6999999999999999999999999999999999999999988899888765332 57


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..++.......                 .++.++++||++|.|++++++++.+.+
T Consensus       117 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (180)
T 2g6b_A          117 VALMLLGNKVDSAHERVVKREDGEKLAKE-----------------YGLPFMETSAKTGLNVDLAFTAIAKEL  172 (180)
T ss_dssp             CEEEEEEECCSTTSCCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999975  3445555444433                 245799999999999999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=3.1e-23  Score=143.85  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=105.6

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||++..  ...+.+++  +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~  131 (201)
T 2ew1_A           53 PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNK  131 (201)
T ss_dssp             TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4567888865  55677777  789999999999999999999999999999999999999998889988876432 346


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          132 VITVLVGNKIDLAERREVSQQRAEEFSEA-----------------QDMYYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             CEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999864  4455555544433                 345799999999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.90  E-value=2.7e-23  Score=141.30  Aligned_cols=131  Identities=15%  Similarity=0.255  Sum_probs=108.3

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+.. ...+..++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.......+
T Consensus        44 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  123 (183)
T 3kkq_A           44 VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES  123 (183)
T ss_dssp             CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSC
T ss_pred             CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35677888875 45556666  6788899999999999999999999999999999999999999999988876444567


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec-cCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL-KRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+..+++......                 .++.+++|||+ +|.|++++|+++.+.+
T Consensus       124 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          124 FPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIPYIETSAKDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             CCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCchhccCcCHHHHHHHHHH-----------------hCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence            89999999999875  5566666665554                 23679999999 9999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.90  E-value=1.8e-23  Score=139.84  Aligned_cols=131  Identities=16%  Similarity=0.244  Sum_probs=105.8

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+.+++  +++.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.......+.
T Consensus        30 ~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  109 (167)
T 1c1y_A           30 EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV  109 (167)
T ss_dssp             CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCC
T ss_pred             CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCC
Confidence            4677888865 34445543  78999999999999999999999999999999999999999988898888764444679


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  .+..+++.......                ...+++++||++|.|++++++++.+.+
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          110 PMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEEECccccccccCCHHHHHHHHHHc----------------cCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            9999999999965  34455555544331                246899999999999999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.90  E-value=7.6e-23  Score=139.99  Aligned_cols=130  Identities=20%  Similarity=0.303  Sum_probs=105.7

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhH-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ..+.||++..  ...+.+++  +++.+|||||++.+. ..+..+++++|++++|+|++++.++..+..|+..+.......
T Consensus        47 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~  126 (189)
T 1z06_A           47 DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN  126 (189)
T ss_dssp             SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS
T ss_pred             CCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            4577888865  56667776  799999999999998 899999999999999999999999999999999887655456


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC---CChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR---QGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+.+  .+..++.......                 .++.++++||++|   .|++++|++|.+.+
T Consensus       127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          127 DIPRILVGNKCDLRSAIQVPTDLAQKFADT-----------------HSMPLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             CCCEEEEEECccccccceeCHHHHHHHHHH-----------------cCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            799999999999965  3455555554433                 2457999999999   99999999998765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.9e-23  Score=142.57  Aligned_cols=129  Identities=17%  Similarity=0.226  Sum_probs=106.8

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.|.+  ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~  128 (192)
T 2fg5_A           50 HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PEN  128 (192)
T ss_dssp             TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTT
T ss_pred             CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCC
Confidence            4678999976  34455543  899999999999999999999999999999999999999999999998886432 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+..+++.+....                 .++.+++|||++|.|+++++++|.+.+
T Consensus       129 ~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          129 IVMAIAGNKCDLSDIREVPLKDAKEYAES-----------------IGAIVVETSAKNAINIEELFQGISRQI  184 (192)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHT-----------------TTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            89999999999974  4456666665544                 346899999999999999999998865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.90  E-value=5.7e-23  Score=142.01  Aligned_cols=131  Identities=18%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+.. ...+.+++  +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......+
T Consensus        40 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  119 (206)
T 2bov_A           40 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN  119 (206)
T ss_dssp             CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35677888875 45667776  6899999999999999999999999999999999999999999999998876554557


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+..+++......                 .++.++++||++|.|++++|++|.+.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~i  175 (206)
T 2bov_A          120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI  175 (206)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCccccccccHHHHHHHHHH-----------------hCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999875  4555666655543                 345899999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.90  E-value=2.4e-23  Score=141.02  Aligned_cols=132  Identities=11%  Similarity=0.147  Sum_probs=100.7

Q ss_pred             CCCCCCCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-
Q psy2161           2 LKNDRTAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA-   77 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~-   77 (155)
                      |.++.+..+.||.+.. ...+.+++  +++++|||||++.     ..+++++|++++|||++++.++..+..|+..+.. 
T Consensus        27 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~  101 (178)
T 2iwr_A           27 FLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL  101 (178)
T ss_dssp             HHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence            3455666688999875 56677776  7899999999986     4577889999999999999999998886544432 


Q ss_pred             -CCCCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          78 -DDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        78 -~~~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                       .....+.|+++|+||+|+.+    .+..+++.......                .++.+++|||++|.|++++|+++.+
T Consensus       102 ~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~l~~  165 (178)
T 2iwr_A          102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----------------KRCSYYETXATYGLNVDRVFQEVAQ  165 (178)
T ss_dssp             HCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH----------------SSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh----------------cCCeEEEEeccccCCHHHHHHHHHH
Confidence             22235789999999999842    45555655544331                2478999999999999999999987


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       166 ~~  167 (178)
T 2iwr_A          166 KV  167 (178)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.1e-22  Score=136.27  Aligned_cols=129  Identities=17%  Similarity=0.315  Sum_probs=105.2

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  108 (170)
T 1ek0_A           30 ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKD  108 (170)
T ss_dssp             TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCC
Confidence            4677898865  45666665  799999999999999999999999999999999999999999999998886543 357


Q ss_pred             CcEEEEEeCCCcCCc-----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDA-----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+.     +...+.......                 .++.++++||++|.|++++|+++.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEE-----------------KGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             CcEEEEEECCCccccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            899999999998642     333444443332                 346899999999999999999999865

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.90  E-value=4.8e-23  Score=142.40  Aligned_cols=133  Identities=18%  Similarity=0.271  Sum_probs=106.9

Q ss_pred             CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ++.+ ..+.||.|..  ...+..++  +++++|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+...
T Consensus        30 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~  109 (203)
T 1zbd_A           30 DDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY  109 (203)
T ss_dssp             TCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            4443 4678898865  45556665  79999999999999999999999999999999999999999988998888643


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . ..+.|+++|+||+|+.+  .+...++......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       110 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  169 (203)
T 1zbd_A          110 S-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH-----------------LGFEFFEASAKDNINVKQTFERLVDVI  169 (203)
T ss_dssp             S-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             c-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            2 35789999999999975  3445555554443                 245899999999999999999998653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.90  E-value=1.5e-24  Score=160.64  Aligned_cols=144  Identities=20%  Similarity=0.317  Sum_probs=109.1

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~~~~~   79 (155)
                      +.||+|+....+.++++++++|||+||++++..|.+||++++++|||+|++          +.+++.+...|+..++++.
T Consensus       145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            678999999999999999999999999999999999999999999999998          6788999999999998877


Q ss_pred             CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------c---------ccccC-----------ccEE
Q psy2161          80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------R---------EILQM-----------RPIE  131 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~---------~~~~~-----------~~~~  131 (155)
                      ...+.|++|++||+|+.+ .+...++...+..+..+.. ....       +         .....           +.+.
T Consensus       225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~-~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  303 (340)
T 4fid_A          225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDN-AVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY  303 (340)
T ss_dssp             GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTC-HHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred             ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCC-HHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence            777899999999999854 1111111122222111100 0000       0         00111           4688


Q ss_pred             EEEeeeccCCChHHHHHHHHhhc
Q psy2161         132 LFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       132 ~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++++||+++.|+..+|..+.+.|
T Consensus       304 ~h~TsA~dt~nv~~vF~~v~~~I  326 (340)
T 4fid_A          304 TNPTNATDGSNIKRVFMLAVDVI  326 (340)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeCcHHHHHHHHHHHHHH
Confidence            99999999999999999987653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.90  E-value=8.5e-23  Score=140.86  Aligned_cols=129  Identities=20%  Similarity=0.263  Sum_probs=102.8

Q ss_pred             cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      .+.||.+..  ...+.+++  +++.+|||+|+..+.. ++..+++++|++++|||++++.+|..+..|+..+.......+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  130 (195)
T 3cbq_A           51 AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD  130 (195)
T ss_dssp             GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSC
T ss_pred             cCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            345665553  55666776  7899999999987765 788899999999999999999999999999988875443457


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       131 ~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~Sa~~~~~v~~lf~~l~~~i  186 (195)
T 3cbq_A          131 LPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHIETSAALHHNTRELFEGAVRQI  186 (195)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEeechhccccCCcCHHHHHHHHHH-----------------hCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            99999999999975  3455555554433                 235899999999999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.90  E-value=9.9e-23  Score=139.25  Aligned_cols=130  Identities=18%  Similarity=0.249  Sum_probs=106.6

Q ss_pred             CcccCCCCCcee---EEEEC-----------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161           8 AQHMPTLHPTSE---ELSMG-----------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD   73 (155)
Q Consensus         8 ~~~~pT~~~~~~---~~~~~-----------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~   73 (155)
                      ..+.||++....   .+.++           .+.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+.
T Consensus        38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~  117 (195)
T 3bc1_A           38 SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWIS  117 (195)
T ss_dssp             CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHH
Confidence            467789887643   45554           3699999999999999999999999999999999999999999899998


Q ss_pred             HHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          74 SLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        74 ~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .+.......++|+++|+||+|+.+  .+..+++......                 .++.++++||++|.|+++++++|.
T Consensus       118 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~  180 (195)
T 3bc1_A          118 QLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----------------YGIPYFETSAANGTNISHAIEMLL  180 (195)
T ss_dssp             HHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCCEEEEECCCCCCHHHHHHHHH
Confidence            887655446799999999999875  4455555555443                 235799999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       181 ~~~  183 (195)
T 3bc1_A          181 DLI  183 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.90  E-value=3.1e-23  Score=140.33  Aligned_cols=131  Identities=19%  Similarity=0.297  Sum_probs=107.1

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+.. ...+.+++  +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..++......+
T Consensus        35 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  114 (181)
T 2fn4_A           35 VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD  114 (181)
T ss_dssp             CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            34677888875 45566776  7899999999999999999999999999999999999999999999988865444567


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+...+.......                 .++.++++||++|.|+++++++|.+.+
T Consensus       115 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~  170 (181)
T 2fn4_A          115 FPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAYFEASAKLRLNVDEAFEQLVRAV  170 (181)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            89999999999875  3445555444333                 346899999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.90  E-value=1.3e-22  Score=137.01  Aligned_cols=131  Identities=18%  Similarity=0.270  Sum_probs=103.7

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC---C
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD---A   80 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~---~   80 (155)
                      ..+.||.|..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+....   .
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  113 (177)
T 1wms_A           34 TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE  113 (177)
T ss_dssp             C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSC
T ss_pred             CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccc
Confidence            4677898875  56667777  799999999999999999999999999999999999999988888888775422   2


Q ss_pred             CCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+ ....+++......                ...+.+++|||++|.|++++|+++.+.+
T Consensus       114 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          114 PESFPFVILGNKIDISERQVSTEEAQAWCRD----------------NGDYPYFETSAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             TTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCcccccccCHHHHHHHHHh----------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            25789999999999864 4556666655442                1345799999999999999999998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.90  E-value=5.4e-23  Score=139.83  Aligned_cols=130  Identities=18%  Similarity=0.253  Sum_probs=107.8

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......++
T Consensus        45 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  124 (187)
T 2a9k_A           45 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV  124 (187)
T ss_dssp             CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4567888775 45566666  68999999999999999999999999999999999999999999999888765544579


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  .....++...+..                 .++.++++||++|.|++++|++|.+.+
T Consensus       125 piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (187)
T 2a9k_A          125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI  179 (187)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            9999999999865  4555666665544                 346899999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.90  E-value=4e-23  Score=138.59  Aligned_cols=126  Identities=19%  Similarity=0.237  Sum_probs=96.7

Q ss_pred             CCCCCceeEEEECC--EEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          12 PTLHPTSEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        12 pT~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      +|.......+.+++  +++.+|||||+..+.. .+..+++++|++++|+|++++.+++.+..|+..+.......++|+++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il  114 (169)
T 3q85_A           35 NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL  114 (169)
T ss_dssp             ---CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred             CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence            33334466677776  7899999999998876 78888999999999999999999999999999888665555899999


Q ss_pred             EEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          89 LGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        89 v~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          115 VGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHIETSAALHHNTRELFEGAVRQI  165 (169)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EeeCcchhhcccCCHHHHHHHHHH-----------------cCCcEEEecCccCCCHHHHHHHHHHHH
Confidence            999999874  4566666555544                 346899999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.90  E-value=8.7e-23  Score=137.91  Aligned_cols=130  Identities=18%  Similarity=0.241  Sum_probs=106.5

Q ss_pred             CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ...+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..
T Consensus        41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~  119 (179)
T 1z0f_A           41 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NP  119 (179)
T ss_dssp             CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CT
T ss_pred             CCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CC
Confidence            34577888875  45566665  799999999999999999999999999999999999999998888988776432 24


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+.+  ....+++.+....                 .++.++++||++|.|++++|+++.+.+
T Consensus       120 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          120 NTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLLFLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999965  3455566655544                 346899999999999999999998764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=142.68  Aligned_cols=135  Identities=16%  Similarity=0.221  Sum_probs=103.4

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++.+ ..+.||.+..  ...+.+++  +.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+..
T Consensus        47 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~  126 (192)
T 2il1_A           47 TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK  126 (192)
T ss_dssp             CC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             hcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            34443 4567888864  56677776  7899999999999999999999999999999999999999988888877654


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . ...+.|+++|+||+|+.+  .+..+++.......                .++.+++|||++|.|++++|++|.+.+
T Consensus       127 ~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~~SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          127 Y-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQI----------------TGMRFCEASAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             H-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             h-cCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3 235789999999999865  34555555444321                246899999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.89  E-value=1.4e-22  Score=137.98  Aligned_cols=129  Identities=19%  Similarity=0.239  Sum_probs=105.7

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  115 (186)
T 2bme_A           37 DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQN  115 (186)
T ss_dssp             TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4567888854  56667777  799999999999999999999999999999999999999999889988775432 257


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+...+.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          116 IVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            89999999999964  4455555554443                 346899999999999999999998653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.89  E-value=2.3e-23  Score=140.84  Aligned_cols=130  Identities=15%  Similarity=0.216  Sum_probs=103.9

Q ss_pred             CcccCCCCCc--eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-C
Q psy2161           8 AQHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-L   81 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~   81 (155)
                      ..+.||+|..  ...+.+++   +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+..... .
T Consensus        33 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  112 (178)
T 2hxs_A           33 KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEES  112 (178)
T ss_dssp             HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhccc
Confidence            3567898854  67777766   8999999999999999999999999999999999999999888888887754210 0


Q ss_pred             CCCc-EEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVP-ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~p-iilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.| +++|+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       113 ~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (178)
T 2hxs_A          113 ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----------------NGFSSHFVSAKTGDSVFLCFQKVAAEI  171 (178)
T ss_dssp             TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEccccccccccCHHHHHHHHHH-----------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            1344 899999999975  3455555554443                 346899999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=140.32  Aligned_cols=133  Identities=17%  Similarity=0.296  Sum_probs=107.1

Q ss_pred             CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++. ...+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (181)
T 3tw8_B           30 ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ  109 (181)
T ss_dssp             CSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3444 34677888864  56777777  8999999999999999999999999999999999999999999999988865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..  .+.|+++|+||+|+.+  .....+.......                 .++.++++||++|.|++++++++.+.+
T Consensus       110 ~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (181)
T 3tw8_B          110 NC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----------------MGIQLFETSAKENVNVEEMFNCITELV  169 (181)
T ss_dssp             HC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            33  4789999999999875  3444555444443                 245799999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=139.64  Aligned_cols=130  Identities=19%  Similarity=0.274  Sum_probs=106.5

Q ss_pred             CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ...+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~  120 (196)
T 3tkl_A           42 TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SE  120 (196)
T ss_dssp             CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CT
T ss_pred             CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CC
Confidence            35667888864  56777777  789999999999999999999999999999999999999999989988886433 34


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+++|+||+|+.+  .....+.......                 .++++++|||++|.|++++|++|.+.+
T Consensus       121 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gv~~l~~~l~~~i  177 (196)
T 3tkl_A          121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LGIPFLETSAKNATNVEQSFMTMAAEI  177 (196)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999865  3444555554443                 235799999999999999999998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.89  E-value=1.1e-22  Score=138.59  Aligned_cols=130  Identities=16%  Similarity=0.284  Sum_probs=103.3

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.......+.
T Consensus        31 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  110 (189)
T 4dsu_A           31 DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV  110 (189)
T ss_dssp             CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred             CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4566777654 45566666  67889999999999999999999999999999999999999999999888765555689


Q ss_pred             cEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+ ....++.......                 .+++++++||++|.|++++|+++.+.+
T Consensus       111 p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~  164 (189)
T 4dsu_A          111 PMVLVGNKCDLPSRTVDTKQAQDLARS-----------------YGIPFIETSAKTRQGVDDAFYTLVREI  164 (189)
T ss_dssp             CEEEEEECTTSSSCSSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEEECccCcccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999975 3455555544443                 235799999999999999999998754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.89  E-value=4.6e-23  Score=144.12  Aligned_cols=129  Identities=16%  Similarity=0.118  Sum_probs=103.0

Q ss_pred             CCcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH-HHHHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE-SKYELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~-~~~~l~~~~~~~~~~   82 (155)
                      ...+.||++... ..+.+++  +.+.+|||+|++.+...+..+++++|++++|||++++.++.. ...|+..+....  .
T Consensus        53 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~  130 (214)
T 3q3j_B           53 PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--P  130 (214)
T ss_dssp             CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--T
T ss_pred             CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--C
Confidence            356789998863 3444444  899999999999999999999999999999999999999988 578888886542  5


Q ss_pred             CCcEEEEEeCCCcCC--------------cCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCC-hHHH
Q psy2161          83 DVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQG-FGNG  146 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~  146 (155)
                      +.|+++|+||+|+.+              .+..++.......                 .++ .+++|||++|.| ++++
T Consensus       131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~e~SA~~g~g~v~~l  193 (214)
T 3q3j_B          131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ-----------------LGAEIYLEGSAFTSEKSIHSI  193 (214)
T ss_dssp             TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCHHHHHHH
T ss_pred             CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH-----------------cCCCEEEEeccCCCcccHHHH
Confidence            789999999999964              2444444444433                 345 899999999998 9999


Q ss_pred             HHHHHhhc
Q psy2161         147 FRWLANYI  154 (155)
Q Consensus       147 ~~~l~~~i  154 (155)
                      |+++.+.+
T Consensus       194 f~~l~~~~  201 (214)
T 3q3j_B          194 FRTASMLC  201 (214)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.89  E-value=3.2e-23  Score=156.53  Aligned_cols=145  Identities=18%  Similarity=0.302  Sum_probs=106.9

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~~   79 (155)
                      ..||+|+....+.++++++++|||+|+++++..|..||++++++|||||+++          .++|.++..|+..+.+..
T Consensus       201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~  280 (402)
T 1azs_C          201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR  280 (402)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred             ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence            3467888888889999999999999999999999999999999999999998          889999999999998776


Q ss_pred             CCCCCcEEEEEeCCCcCCc-C--CHHHHHhhhcccCc-------cCCCcc----ccc--------ccc------cCccEE
Q psy2161          80 ALTDVPILILGNKIDIFDA-A--SEDEVRHFFGLYGL-------TTGKEF----TSR--------EIL------QMRPIE  131 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~-~--~~~~i~~~~~~~~~-------~~~~~~----~~~--------~~~------~~~~~~  131 (155)
                      ...+.|++||+||+|+.+. +  ....+...+..+..       ++..+.    ...        ...      ....+.
T Consensus       281 ~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~  360 (402)
T 1azs_C          281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY  360 (402)
T ss_dssp             TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEE
T ss_pred             cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccE
Confidence            6678999999999998531 1  00011111111110       000000    000        011      113678


Q ss_pred             EEEeeeccCCChHHHHHHHHhhc
Q psy2161         132 LFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       132 ~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++|||+++.||.++|.++.+.+
T Consensus       361 ~~~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          361 PHFTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCcCHHHHHHHHHHHH
Confidence            89999999999999999987643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.89  E-value=7.3e-23  Score=140.37  Aligned_cols=129  Identities=18%  Similarity=0.243  Sum_probs=102.4

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        48 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~  126 (191)
T 2a5j_A           48 PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSN  126 (191)
T ss_dssp             C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            3567888865  55677776  799999999999999999999999999999999999999999989998886532 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       127 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          127 MVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLIFMETSAKTACNVEEAFINTAKEI  182 (191)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCCccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999965  4455555554443                 346899999999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.89  E-value=4.8e-23  Score=138.21  Aligned_cols=129  Identities=19%  Similarity=0.293  Sum_probs=98.5

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        33 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  111 (170)
T 1z08_A           33 DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNE  111 (170)
T ss_dssp             SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGG
T ss_pred             cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4677898876  45566655  789999999999999999999999999999999999999999888888765322 246


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..++.......                 .++.++++||++|.|++++++++.+.+
T Consensus       112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          112 ICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAKHYHTSAKQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            89999999999975  4455555555443                 246899999999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.89  E-value=2.2e-22  Score=134.84  Aligned_cols=130  Identities=17%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ...+.||.|..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+... ...
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~  110 (170)
T 1z0j_A           32 DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPP  110 (170)
T ss_dssp             CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCT
T ss_pred             CCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence            34678888875  45566665  89999999999999999999999999999999999999999888898888653 335


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..|+++|+||+|+.+  .+..++.......                 .++.++++||++|.|++++++++.+.+
T Consensus       111 ~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          111 SIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             TSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCcEEEEEECCccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            789999999999865  3445555544433                 346899999999999999999998865

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.89  E-value=5.8e-23  Score=137.09  Aligned_cols=130  Identities=17%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+.+++  +.+++|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.......+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  109 (167)
T 1kao_A           30 EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV  109 (167)
T ss_dssp             SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4567887764 56666766  67999999999999999999999999999999999999999999998888765555689


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  .....+.......                 .+++++++||++|.|++++++++.+.+
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          110 PVILVGNKVDLESEREVSSSEGRALAEE-----------------WGCPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCcccccccCCHHHHHHHHHH-----------------hCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence            9999999999865  3445555444433                 235799999999999999999998754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=9.8e-23  Score=139.90  Aligned_cols=128  Identities=19%  Similarity=0.285  Sum_probs=101.3

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+++|||||++.+...+..+++++|++++|+|++++.++..+. .|+..+...  ..+
T Consensus        45 ~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~  122 (194)
T 2atx_A           45 EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APN  122 (194)
T ss_dssp             CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STT
T ss_pred             CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence            4678898876 45666666  89999999999999999999999999999999999999998886 788777643  247


Q ss_pred             CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161          84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  148 (155)
                      .|+++|+||+|+.+.              +..++.......                 .+. .+++|||++|.|++++|+
T Consensus       123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~~  185 (194)
T 2atx_A          123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE-----------------IGACCYVECSALTQKGLKTVFD  185 (194)
T ss_dssp             CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH-----------------HTCSCEEECCTTTCTTHHHHHH
T ss_pred             CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH-----------------cCCcEEEEeeCCCCCCHHHHHH
Confidence            899999999998652              222233222221                 223 789999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       186 ~l~~~i  191 (194)
T 2atx_A          186 EAIIAI  191 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.89  E-value=3.7e-23  Score=144.39  Aligned_cols=130  Identities=18%  Similarity=0.278  Sum_probs=105.1

Q ss_pred             CcccCCCCCc--eeEEEEC------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161           8 AQHMPTLHPT--SEELSMG------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD   73 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~   73 (155)
                      ..+.||++..  ...+.++            ++++++|||||++.+...+..+++++|++++|+|++++.++..+..|+.
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~  131 (217)
T 2f7s_A           52 PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS  131 (217)
T ss_dssp             CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH
T ss_pred             cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence            4567888764  3445554            5789999999999999999999999999999999999999999889988


Q ss_pred             HHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          74 SLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        74 ~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .+.......++|+++|+||+|+.+  .+...++......                 .++.+++|||++|.|++++|++|.
T Consensus       132 ~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~  194 (217)
T 2f7s_A          132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----------------YGIPYFETSAATGQNVEKAVETLL  194 (217)
T ss_dssp             TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred             HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----------------CCCcEEEEECCCCCCHHHHHHHHH
Confidence            886544446799999999999975  3455555555443                 245799999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       195 ~~i  197 (217)
T 2f7s_A          195 DLI  197 (217)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.89  E-value=2e-22  Score=139.65  Aligned_cols=129  Identities=19%  Similarity=0.310  Sum_probs=105.9

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~  113 (206)
T 2bcg_Y           35 NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TST  113 (206)
T ss_dssp             TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred             CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4677888875  45667776  699999999999999999999999999999999999999999999998886433 347


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..++.......                 .++.++++||++|.|++++|+++.+.+
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~i  169 (206)
T 2bcg_Y          114 VLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMPFLETSALDSTNVEDAFLTMARQI  169 (206)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999975  3455555554433                 245799999999999999999998754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.9e-22  Score=139.37  Aligned_cols=130  Identities=16%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ....||+|..  ...+.+++  +++.+|||+|+.. ++.+...|++.++++++|||++++.+|+.+..|+..+.......
T Consensus        65 ~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~  144 (211)
T 2g3y_A           65 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE  144 (211)
T ss_dssp             CCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT
T ss_pred             CCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4445666664  46677777  6789999999887 56678888999999999999999999999988888776433335


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+++|+||+|+.+  .+..++.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       145 ~~piilVgNK~DL~~~r~v~~~e~~~~a~~-----------------~~~~~~e~SAk~g~~v~elf~~l~~~i  201 (211)
T 2g3y_A          145 DIPIILVGNKSDLVRCREVSVSEGRACAVV-----------------FDCKFIETSAAVQHNVKELFEGIVRQV  201 (211)
T ss_dssp             TSCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcEEEEEEChHHhcCceEeHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            789999999999964  3444443332222                 346899999999999999999998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=4.4e-23  Score=142.63  Aligned_cols=131  Identities=16%  Similarity=0.165  Sum_probs=102.7

Q ss_pred             CCcccCCCCCce-eEEEE--CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           7 TAQHMPTLHPTS-EELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         7 ~~~~~pT~~~~~-~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ...+.||.+... ..+.+  .++.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.......+
T Consensus        50 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  129 (201)
T 3oes_A           50 SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR  129 (201)
T ss_dssp             CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----C
T ss_pred             CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            346678888653 33333  348999999999999999999999999999999999999999999999999986655567


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+...+.......                 .++.++++||++|.|++++|++|.+.+
T Consensus       130 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~i  185 (201)
T 3oes_A          130 VPVVLVGNKADLSPEREVQAVEGKKLAES-----------------WGATFMESSARENQLTQGIFTKVIQEI  185 (201)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccCccccccCHHHHHHHHHH-----------------hCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999865  4455555444443                 345899999999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.89  E-value=8e-23  Score=141.33  Aligned_cols=129  Identities=18%  Similarity=0.232  Sum_probs=100.2

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+++|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  130 (200)
T 2o52_A           52 QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPN  130 (200)
T ss_dssp             --------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTT
T ss_pred             ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4567888865  56667777  899999999999999999999999999999999999999999999988876433 257


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+...+.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       131 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          131 IVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999864  3455555554443                 346899999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=5.4e-23  Score=141.05  Aligned_cols=129  Identities=12%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             CcccCCCCCc--eeEEEEC--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.|..  ...+..+  ++.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+... ...+
T Consensus        50 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~  128 (191)
T 3dz8_A           50 PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDN  128 (191)
T ss_dssp             CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence            5667888875  3444444  489999999999999999999999999999999999999999998998888653 2357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .....+.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       129 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (191)
T 3dz8_A          129 AQVILVGNKCDMEEERVVPTEKGQLLAEQ-----------------LGFDFFEASAKENISVRQAFERLVDAI  184 (191)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999865  3455555554443                 345899999999999999999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.89  E-value=2.4e-22  Score=137.54  Aligned_cols=129  Identities=16%  Similarity=0.260  Sum_probs=104.8

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.|..  ...+..++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        49 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~  127 (189)
T 2gf9_A           49 PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDN  127 (189)
T ss_dssp             CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4677888875  35555554  799999999999999999999999999999999999999998888988876432 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+..+++......                 .++.++++||++|.|+++++++|.+.+
T Consensus       128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          128 AQVILVGNKCDLEDERVVPAEDGRRLADD-----------------LGFEFFEASAKENINVKQVFERLVDVI  183 (189)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999865  3445555554443                 245899999999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.89  E-value=4.1e-22  Score=136.66  Aligned_cols=129  Identities=16%  Similarity=0.252  Sum_probs=105.1

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.|..  ...+.+++  +++.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~  130 (193)
T 2oil_A           52 HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EAT  130 (193)
T ss_dssp             SSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTT
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            3567888865  45555654  899999999999999999999999999999999999999988889998886432 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+...+.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       131 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          131 IVVMLVGNKSDLSQAREVPTEEARMFAEN-----------------NGLLFLETSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999975  3455555554433                 346899999999999999999998753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.88  E-value=1.3e-22  Score=135.73  Aligned_cols=128  Identities=19%  Similarity=0.339  Sum_probs=105.5

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+....  .+
T Consensus        32 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~  109 (168)
T 1z2a_A           32 KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GD  109 (168)
T ss_dssp             CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CS
T ss_pred             CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CC
Confidence            4678888875  55666665  799999999999999999999999999999999999999998888988886543  57


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  ....+++......                 .++.++++||++|.|++++++++.+.+
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          110 IPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRFYRTSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            89999999999865  4455565555443                 345899999999999999999998753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.88  E-value=3.7e-22  Score=137.31  Aligned_cols=109  Identities=20%  Similarity=0.249  Sum_probs=93.1

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEV  104 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i  104 (155)
                      ..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+....   +.|+++|+||+|+.. ....+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~~  169 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILEV  169 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHHH
Confidence            789999999999999999999999999999999999999999889998886543   389999999999433 4566677


Q ss_pred             HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+.+..                 .++.++++||++|.|+++++++|.+.+
T Consensus       170 ~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          170 QKYAQD-----------------NNLLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             HHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHH-----------------cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            666654                 346899999999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-22  Score=142.47  Aligned_cols=129  Identities=20%  Similarity=0.276  Sum_probs=99.0

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+++|||||++.+...+..+++++|++|+|||++++.+++.+..|+..+.... ..+
T Consensus        40 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~  118 (223)
T 3cpj_B           40 MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDN  118 (223)
T ss_dssp             C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--
T ss_pred             CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCC
Confidence            4567888865  56677777  799999999999999999999999999999999999999999999998886432 357


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+  .+...+.......                 .++.++++||++|.|++++|++|.+.+
T Consensus       119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  174 (223)
T 3cpj_B          119 VAVGLIGNKSDLAHLRAVPTEESKTFAQE-----------------NQLLFTETSALNSENVDKAFEELINTI  174 (223)
T ss_dssp             CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999865  3455555554443                 346899999999999999999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.88  E-value=1.4e-22  Score=139.13  Aligned_cols=128  Identities=13%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+++|||||++.+...+..+++++|++++|+|++++.++..+ ..|+..+...  ..+
T Consensus        50 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~  127 (194)
T 3reg_A           50 TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDT  127 (194)
T ss_dssp             SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTT
T ss_pred             CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence            4678998876 44455666  7789999999999999999999999999999999999999886 6677766533  357


Q ss_pred             CcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEE-EEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE-LFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+    .+..+++......                 .++. +++|||++|.|++++|+++.+.+
T Consensus       128 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (194)
T 3reg_A          128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-----------------LGCVAYIEASSVAKIGLNEVFEKSVDCI  186 (194)
T ss_dssp             SEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----------------HTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhccCCCCcccHHHHHHHHHh-----------------cCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence            89999999999864    3455565555444                 2234 99999999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.88  E-value=3e-22  Score=135.23  Aligned_cols=129  Identities=19%  Similarity=0.248  Sum_probs=105.5

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++.....|+..+.... ..+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~  119 (179)
T 2y8e_A           41 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSD  119 (179)
T ss_dssp             SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTS
T ss_pred             CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4567888864  56666776  799999999999999999999999999999999999999999889988876432 247


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .....+.......                 .++.++++||++|.|++++++++.+.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          120 VIIMLVGNKTDLSDKRQVSTEEGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             CcEEEEEECCcccccCcCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999865  3445555544433                 346899999999999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.88  E-value=4.5e-22  Score=138.59  Aligned_cols=152  Identities=19%  Similarity=0.183  Sum_probs=100.1

Q ss_pred             CCCCCCcccCCCCCceeEEEEC---CEEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHh
Q psy2161           3 KNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~~~~~~~~---~~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~   77 (155)
                      .++.+....||.+.....+.++   ++++++|||||+..+.. ++..|++++|++++|+|+++.. ++.....++..++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  107 (214)
T 2fh5_B           28 LTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI  107 (214)
T ss_dssp             HHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred             hCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHh
Confidence            3445555556666766668777   58999999999999988 8999999999999999998743 35555555554433


Q ss_pred             C--CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc----------Ccc------------CCCcccccccccCccEEEE
Q psy2161          78 D--DALTDVPILILGNKIDIFDAASEDEVRHFFGLY----------GLT------------TGKEFTSREILQMRPIELF  133 (155)
Q Consensus        78 ~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~----------~~~------------~~~~~~~~~~~~~~~~~~~  133 (155)
                      .  ....++|+++|+||+|+.+......+.+.+...          ...            ...+.....+.....+.++
T Consensus       108 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (214)
T 2fh5_B          108 DSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL  187 (214)
T ss_dssp             HHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEE
T ss_pred             hhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEE
Confidence            2  123468999999999997654444433332210          000            0000000000111278999


Q ss_pred             EeeeccC------CChHHHHHHHHhhc
Q psy2161         134 MCSVLKR------QGFGNGFRWLANYI  154 (155)
Q Consensus       134 ~~Sa~~~------~~i~~~~~~l~~~i  154 (155)
                      +|||++|      .|++++|+||.+.+
T Consensus       188 e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          188 ECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ECBCC-------CCBCHHHHHHHHHHC
T ss_pred             EeeccCCCccccccChHHHHHHHHHhC
Confidence            9999999      99999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=2e-22  Score=138.67  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||+.. ...+..+++++|++++|||++++.+++.+..|+..+.......+.
T Consensus        55 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~  133 (196)
T 2atv_A           55 WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV  133 (196)
T ss_dssp             SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCC
T ss_pred             cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCC
Confidence            4677888875 34466665  7899999999988 788999999999999999999999999998888887654444578


Q ss_pred             cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC-ChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ-GFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+  .+...+.......                 .++.+++|||++|. |++++|++|.+.+
T Consensus       134 piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          134 TLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAFYECSACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred             cEEEEEECcccccccccCHHHHHHHHHH-----------------hCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence            9999999999975  3455555554433                 24689999999999 9999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=140.13  Aligned_cols=129  Identities=20%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.|..  ...+.+++  +.+++|||||++.+...+..+++++|++++|+|++++.++..+..|+..+... ...+
T Consensus        55 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~  133 (199)
T 2p5s_A           55 ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHET  133 (199)
T ss_dssp             ----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---
T ss_pred             ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCC
Confidence            4677888865  56677776  78999999999999999999999999999999999999999888888877542 2247


Q ss_pred             CcEEEEEeCCCcCC--------cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+        .+...+.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT-----------------YGALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccccccccCHHHHHHHHHH-----------------cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            89999999999852        2333343333322                 346899999999999999999998765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.88  E-value=2.4e-22  Score=138.68  Aligned_cols=128  Identities=14%  Similarity=0.216  Sum_probs=98.0

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+++|||||++.+...+..+++++|++++|||++++.++..+. .|+..+....  .+
T Consensus        47 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~  124 (201)
T 2q3h_A           47 TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PK  124 (201)
T ss_dssp             ----CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SS
T ss_pred             CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence            4677888865 45566776  68889999999999999999999999999999999999998886 7887776432  47


Q ss_pred             CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161          84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  148 (155)
                      .|+++|+||+|+.+.              +..++.......                 .+. .+++|||++|.|++++|+
T Consensus       125 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~~  187 (201)
T 2q3h_A          125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE-----------------IKAASYIECSALTQKNLKEVFD  187 (201)
T ss_dssp             SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCTTHHHHHH
T ss_pred             CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh-----------------cCCcEEEEEecCCCCCHHHHHH
Confidence            899999999998642              222233322222                 233 799999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       188 ~l~~~~  193 (201)
T 2q3h_A          188 AAIVAG  193 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.88  E-value=2.9e-22  Score=135.67  Aligned_cols=131  Identities=22%  Similarity=0.323  Sum_probs=92.0

Q ss_pred             CcccCCCCCc--eeEEEEC---CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC---
Q psy2161           8 AQHMPTLHPT--SEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD---   79 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~---   79 (155)
                      ..+.||.+..  ...+.++   .+.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+....   
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  114 (182)
T 1ky3_A           35 QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN  114 (182)
T ss_dssp             TTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred             cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc
Confidence            4677888865  4555555   2799999999999999999999999999999999999999999888988776432   


Q ss_pred             CCCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...+.|+++|+||+|+.+   .+...++......                ...+.+++|||++|.|++++|+++.+.+
T Consensus       115 ~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          115 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----------------LGDIPLFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEECCccccccccCCHHHHHHHHHh----------------cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            235789999999999854   2345555554431                1346799999999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.88  E-value=8.6e-23  Score=136.87  Aligned_cols=129  Identities=17%  Similarity=0.258  Sum_probs=99.0

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+..  ...+.+++  +++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~  108 (170)
T 1g16_A           30 PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDE  108 (170)
T ss_dssp             C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4677888865  45666665  799999999999999999999999999999999999989988889988886533 247


Q ss_pred             CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+ ....++.......                 .+++++++||++|.|++++++++.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~  163 (170)
T 1g16_A          109 AQLLLVGNKSDMETRVVTADQGEALAKE-----------------LGIPFIESSAKNDDNVNEIFFTLAKLI  163 (170)
T ss_dssp             CEEEEEEECTTCTTCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECccCCcCccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999954 3455555544433                 235799999999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=139.13  Aligned_cols=130  Identities=21%  Similarity=0.255  Sum_probs=100.9

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC--CC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD--AL   81 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~--~~   81 (155)
                      ...+.||++.. ...+.+++  +.+++|||||++.++.. ..+++++|++++|||++++.+++.+..|+..+....  ..
T Consensus        47 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  125 (187)
T 3c5c_A           47 ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ  125 (187)
T ss_dssp             CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccC
Confidence            35678999875 34455655  78999999999988774 678999999999999999999999999998886431  12


Q ss_pred             CCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeee-ccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSV-LKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~l~~~i  154 (155)
                      .+.|+++|+||+|+.+  .++.+++.+....                 .++.+++||| ++|.|++++|+++.+.+
T Consensus       126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----------------FGCLFFEVSACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             CCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcchhhcCccCHHHHHHHHHH-----------------cCCcEEEEeecCccccHHHHHHHHHHHH
Confidence            4789999999999965  4555666555544                 3458999999 89999999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.88  E-value=1.1e-21  Score=134.07  Aligned_cols=130  Identities=16%  Similarity=0.286  Sum_probs=94.6

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+..++  +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......++
T Consensus        48 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  127 (190)
T 3con_A           48 DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV  127 (190)
T ss_dssp             SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4566777765 45666666  67999999999999999999999999999999999999998888888877654434578


Q ss_pred             cEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+ ....+++.+....                 .++.+++|||++|.|+++++++|.+.+
T Consensus       128 p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  181 (190)
T 3con_A          128 PMVLVGNKCDLPTRTVDTKQAHELAKS-----------------YGIPFIETSAKTRQGVEDAFYTLVREI  181 (190)
T ss_dssp             CEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEEECCcCCcccCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999875 4455555555443                 235799999999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.87  E-value=1.3e-21  Score=135.23  Aligned_cols=128  Identities=16%  Similarity=0.265  Sum_probs=99.2

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~   82 (155)
                      ...+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+ ..|+..+...  ..
T Consensus        51 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~  128 (201)
T 2gco_A           51 PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CP  128 (201)
T ss_dssp             CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--ST
T ss_pred             CcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence            34677898876 45567776  6999999999999999999999999999999999999999888 5677666542  24


Q ss_pred             CCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHH
Q psy2161          83 DVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~  147 (155)
                      +.|+++|+||+|+.+..              ..++.......                 .+. .+++|||++|.|+++++
T Consensus       129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~SA~~g~gi~~l~  191 (201)
T 2gco_A          129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR-----------------ISAFGYLECSAKTKEGVREVF  191 (201)
T ss_dssp             TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH-----------------TTCSEEEECCTTTCTTHHHHH
T ss_pred             CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh-----------------CCCcEEEEeeCCCCCCHHHHH
Confidence            78999999999986531              11122221111                 223 79999999999999999


Q ss_pred             HHHHhh
Q psy2161         148 RWLANY  153 (155)
Q Consensus       148 ~~l~~~  153 (155)
                      +++.+.
T Consensus       192 ~~i~~~  197 (201)
T 2gco_A          192 EMATRA  197 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.87  E-value=3.1e-22  Score=138.49  Aligned_cols=131  Identities=18%  Similarity=0.300  Sum_probs=104.3

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC---
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA---   80 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~---   80 (155)
                      ..+.||.+..  ...+.+++  +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+.....   
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  114 (207)
T 1vg8_A           35 NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD  114 (207)
T ss_dssp             SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSS
T ss_pred             CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccccc
Confidence            4677888865  44555555  7999999999999999999999999999999999999999888888887764321   


Q ss_pred             CCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+ ....+++......                ...+.++++||++|.|++++|++|.+.+
T Consensus       115 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (207)
T 1vg8_A          115 PENFPFVVLGNKIDLENRQVATKRAQAWCYS----------------KNNIPYFETSAKEAINVEQAFQTIARNA  173 (207)
T ss_dssp             GGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCcccccCHHHHHHHHHh----------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            24689999999999975 3455555554431                1346799999999999999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.87  E-value=2.7e-22  Score=140.06  Aligned_cols=135  Identities=20%  Similarity=0.254  Sum_probs=105.6

Q ss_pred             CCCCCC-CcccCCCCCceeEEEE--C-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPTSEELSM--G-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~~~~~~--~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      |.++.+ ..+.||.+.......+  . +  +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+
T Consensus        31 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  110 (218)
T 4djt_A           31 VLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF  110 (218)
T ss_dssp             CTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             HhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            455553 4667899886544443  2 2  88999999999999999999999999999999999999998888888887


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .... ..++|+++|+||+|+.+  .+...........                 .++.+++|||++|.|++++|++|.+.
T Consensus       111 ~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gv~~l~~~l~~~  172 (218)
T 4djt_A          111 QAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-----------------KNYEYFEISAKTAHNFGLPFLHLARI  172 (218)
T ss_dssp             HHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTT-----------------CCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred             HHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            6432 23589999999999875  3444555444443                 45689999999999999999999875


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       173 ~  173 (218)
T 4djt_A          173 F  173 (218)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=5.1e-22  Score=137.98  Aligned_cols=129  Identities=17%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||++..  ...+.+++  +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..+
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~  125 (213)
T 3cph_A           47 PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDE  125 (213)
T ss_dssp             CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTC
T ss_pred             cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4677888865  56677777  789999999999999999999999999999999999989988888988876533 246


Q ss_pred             CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.. .....+.......                 .++++++|||++|.|++++|++|.+.+
T Consensus       126 ~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  180 (213)
T 3cph_A          126 AQLLLVGNKSDMETRVVTADQGEALAKE-----------------LGIPFIESSAKNDDNVNEIFFTLAKLI  180 (213)
T ss_dssp             SEEEEEEECTTCSSCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCcccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999954 3444555444433                 235799999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.87  E-value=9.6e-22  Score=130.90  Aligned_cols=130  Identities=16%  Similarity=0.278  Sum_probs=104.6

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ..+.||.+.. ...+..++  +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  109 (166)
T 2ce2_X           30 DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV  109 (166)
T ss_dssp             SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             cccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4566777765 45566665  77999999999999999999999999999999999999998888898887654444578


Q ss_pred             cEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+ .....++......                 .+++++++||++|.|++++++++.+.+
T Consensus       110 p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          110 PMVLVGNKSDLAARTVESRQAQDLARS-----------------YGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             CEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEEEchhhhhcccCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            9999999999876 3444555554433                 235799999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=140.53  Aligned_cols=128  Identities=15%  Similarity=0.190  Sum_probs=83.3

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+++|||||++.+...+..+++++|++++|+|++++.+++.+. .|+..+....  .+
T Consensus        61 ~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~  138 (214)
T 2j1l_A           61 ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KK  138 (214)
T ss_dssp             ---CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SS
T ss_pred             CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CC
Confidence            4567888765 45566666  68999999999999999999999999999999999999998886 6877775432  47


Q ss_pred             CcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161          84 VPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  148 (155)
                      +|+++|+||+|+.+..              ...+.......                 .+. .+++|||++|.|++++|+
T Consensus       139 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~SA~~g~gi~el~~  201 (214)
T 2j1l_A          139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS-----------------VGAVAYLECSARLHDNVHAVFQ  201 (214)
T ss_dssp             CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------TTCSEEEECBTTTTBSHHHHHH
T ss_pred             CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh-----------------cCCCEEEEecCCCCCCHHHHHH
Confidence            8999999999986532              12222222211                 233 899999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       202 ~l~~~~  207 (214)
T 2j1l_A          202 EAAEVA  207 (214)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.87  E-value=8.4e-22  Score=133.90  Aligned_cols=129  Identities=16%  Similarity=0.260  Sum_probs=99.4

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~   82 (155)
                      ...+.||.+.. ...+.+++  +++++|||||++.+...+..+++++|++++|+|++++.++.... .|+..+....  .
T Consensus        31 ~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~  108 (186)
T 1mh1_A           31 PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--P  108 (186)
T ss_dssp             CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--T
T ss_pred             CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--C
Confidence            35677888875 44566666  78889999999999999999999999999999999999998886 6777775432  3


Q ss_pred             CCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHH
Q psy2161          83 DVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  147 (155)
                      +.|+++|+||+|+.+..              ..++.......                 .+ ..+++|||++|.|++++|
T Consensus       109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~  171 (186)
T 1mh1_A          109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-----------------IGAVKYLECSALTQRGLKTVF  171 (186)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------TTCSEEEECCTTTCTTHHHHH
T ss_pred             CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh-----------------cCCcEEEEecCCCccCHHHHH
Confidence            78999999999986421              11222221111                 23 389999999999999999


Q ss_pred             HHHHhhc
Q psy2161         148 RWLANYI  154 (155)
Q Consensus       148 ~~l~~~i  154 (155)
                      +++.+.+
T Consensus       172 ~~l~~~~  178 (186)
T 1mh1_A          172 DEAIRAV  178 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.87  E-value=2.2e-22  Score=140.02  Aligned_cols=129  Identities=16%  Similarity=0.233  Sum_probs=100.1

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~   82 (155)
                      ...+.||++.. ...+.+++  +.+++|||||++.+...+..+++++|++++|||++++.+++.+. .|+..+....  .
T Consensus        35 ~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~  112 (212)
T 2j0v_A           35 PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--P  112 (212)
T ss_dssp             CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--T
T ss_pred             CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--C
Confidence            35678999876 44556665  79999999999999999999999999999999999999998886 7887775432  3


Q ss_pred             CCcEEEEEeCCCcCCc----------CCHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHHHHHH
Q psy2161          83 DVPILILGNKIDIFDA----------ASEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      +.|+++|+||+|+.+.          +...+.......                 .+ ..+++|||++|.|++++|+++.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~~~l~  175 (212)
T 2j0v_A          113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ-----------------IGAAAYIECSSKTQQNVKAVFDTAI  175 (212)
T ss_dssp             TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH-----------------cCCceEEEccCCCCCCHHHHHHHHH
Confidence            7899999999998652          133333333322                 22 3799999999999999999998


Q ss_pred             hhc
Q psy2161         152 NYI  154 (155)
Q Consensus       152 ~~i  154 (155)
                      +.+
T Consensus       176 ~~~  178 (212)
T 2j0v_A          176 KVV  178 (212)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.87  E-value=1.7e-22  Score=141.54  Aligned_cols=129  Identities=19%  Similarity=0.337  Sum_probs=102.4

Q ss_pred             CCcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ...+.||.|.+..  .+..++  +.+++|||||++.+...+..+++++|++++|+|++++.++..+..|+..+....  .
T Consensus        41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~  118 (221)
T 3gj0_A           41 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--E  118 (221)
T ss_dssp             TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--T
T ss_pred             CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--C
Confidence            3467899987644  344444  899999999999999999999999999999999999999999999998887543  4


Q ss_pred             CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+.+.....+.....                 ...++.+++|||++|.|++++|++|.+.+
T Consensus       119 ~~p~ilv~nK~Dl~~~~~~~~~~~~~-----------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l  173 (221)
T 3gj0_A          119 NIPIVLCGNKVDIKDRKVKAKSIVFH-----------------RKKNLQYYDISAKSNYNFEKPFLWLARKL  173 (221)
T ss_dssp             TCCEEEEEECTTSSSCSSCGGGCCHH-----------------HHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred             CCCEEEEEECCccccccccHHHHHHH-----------------HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            78999999999997632222111111                 22356899999999999999999998754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=6.5e-23  Score=153.00  Aligned_cols=133  Identities=23%  Similarity=0.364  Sum_probs=98.2

Q ss_pred             CCCCCceeEEEEC------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHH
Q psy2161          12 PTLHPTSEELSMG------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSL   75 (155)
Q Consensus        12 pT~~~~~~~~~~~------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~   75 (155)
                      +|.|+....+.++      ++++++|||+|+++++..|.+||++++++|+|||++          +.+++.+...|+..+
T Consensus       163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i  242 (354)
T 2xtz_A          163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  242 (354)
T ss_dssp             CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH
Confidence            4555555555553      489999999999999999999999999999999998          788999999999999


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCc----CC-------------------HHHHHhhhcccCccCCCcccccccc-------
Q psy2161          76 LADDALTDVPILILGNKIDIFDA----AS-------------------EDEVRHFFGLYGLTTGKEFTSREIL-------  125 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~----~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~-------  125 (155)
                      .+.....+.|++||+||+|+.+.    ++                   .++...++..          .+..+       
T Consensus       243 ~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~----------~f~~l~~~~~~~  312 (354)
T 2xtz_A          243 LKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKK----------KFEELYYQNTAP  312 (354)
T ss_dssp             HTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHH----------HHHHHHHHTCCT
T ss_pred             HhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHH----------HHHHhhhccccc
Confidence            87655578999999999998541    11                   1111111110          00000       


Q ss_pred             --cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         126 --QMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       126 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                        ....+.+++|||+++.||.++|+++.+.+
T Consensus       313 ~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          313 DRVDRVFKIYRTTALDQKLVKKTFKLVDETL  343 (354)
T ss_dssp             TTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence              02356789999999999999999988653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.87  E-value=3.6e-22  Score=136.14  Aligned_cols=128  Identities=17%  Similarity=0.210  Sum_probs=99.6

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+ ..|+..+...  ..+
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~  111 (184)
T 1m7b_A           34 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPN  111 (184)
T ss_dssp             SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTT
T ss_pred             CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCC
Confidence            4578898875 34555554  8999999999999999999999999999999999999999888 6787777543  247


Q ss_pred             CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec-cCCChHHHHH
Q psy2161          84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL-KRQGFGNGFR  148 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~  148 (155)
                      .|+++|+||+|+.+.              ++.++.......              .  ..+.+++|||+ +|.|++++|+
T Consensus       112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~--~~~~~~e~Sa~~~~~gi~~l~~  175 (184)
T 1m7b_A          112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ--------------I--GAATYIECSALQSENSVRDIFH  175 (184)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH--------------H--TCSEEEECBTTTBHHHHHHHHH
T ss_pred             CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH--------------c--CCcEEEEeeecCCCcCHHHHHH
Confidence            899999999998641              333333333322              1  12589999999 6899999999


Q ss_pred             HHHhh
Q psy2161         149 WLANY  153 (155)
Q Consensus       149 ~l~~~  153 (155)
                      ++.+.
T Consensus       176 ~i~~~  180 (184)
T 1m7b_A          176 VATLA  180 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=7.7e-22  Score=132.31  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=100.7

Q ss_pred             CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-CCCC
Q psy2161           8 AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-ALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-~~~~   83 (155)
                      ..+.||.+... ..+..++  +.+++|||||+..+...+..+++.+|++++|+|++++.+++....|+..+.... ...+
T Consensus        30 ~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  109 (172)
T 2erx_A           30 ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES  109 (172)
T ss_dssp             SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---C
T ss_pred             CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            46778888753 3444554  789999999999999999999999999999999999888888888877665421 2347


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+  .+...+.......                 .++.++++||++|.|++++++++.+.+
T Consensus       110 ~pii~v~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          110 IPIMLVGNKCDESPSREVQSSEAEALART-----------------WKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CCEEEEEEccccccccccCHHHHHHHHHH-----------------hCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            89999999999865  3444444433332                 245899999999999999999998765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.87  E-value=9.2e-22  Score=136.45  Aligned_cols=129  Identities=16%  Similarity=0.272  Sum_probs=97.8

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++... .|+..+....  .+
T Consensus        57 ~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~  134 (204)
T 4gzl_A           57 GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PN  134 (204)
T ss_dssp             C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SS
T ss_pred             CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence            4677888764 44555555  77889999999999999999999999999999999999998886 6777775433  57


Q ss_pred             CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161          84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW  149 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  149 (155)
                      +|+++|+||+|+.+.              +...+.......                ....++++|||++|.|++++|++
T Consensus       135 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~~  198 (204)
T 4gzl_A          135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE----------------IGAVKYLECSALTQRGLKTVFDE  198 (204)
T ss_dssp             CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH----------------TTCSEEEECCTTTCTTHHHHHHH
T ss_pred             CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh----------------cCCcEEEEeeCCCCCCHHHHHHH
Confidence            899999999998652              122222222211                11246999999999999999999


Q ss_pred             HHhhc
Q psy2161         150 LANYI  154 (155)
Q Consensus       150 l~~~i  154 (155)
                      +.+.+
T Consensus       199 l~~~~  203 (204)
T 4gzl_A          199 AIRAV  203 (204)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            98754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.87  E-value=1.9e-23  Score=144.30  Aligned_cols=135  Identities=19%  Similarity=0.279  Sum_probs=96.8

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++.+ ..+.||.+..  ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.
T Consensus        53 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  132 (199)
T 3l0i_B           53 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID  132 (199)
T ss_dssp             SBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            444443 4556777754  56777777  789999999999999999999999999999999999999999999998885


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ...++|+++|+||+|+.+.  +...+.......                 .++.+++|||++|.|++++|++|.+.+
T Consensus       133 ~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~vSA~~g~gv~~l~~~l~~~l  194 (199)
T 3l0i_B          133 RY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LGIPFLETSAKNATNVEQSFMTMAAEI  194 (199)
T ss_dssp             SC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-----------------TTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred             Hh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            43 3357899999999998642  222222222221                 345789999999999999999998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.3e-21  Score=134.47  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=101.3

Q ss_pred             CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-CCC
Q psy2161           8 AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-LTD   83 (155)
Q Consensus         8 ~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~~~   83 (155)
                      ..+.||.+... ..+..++  +.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+..... ..+
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  114 (199)
T 2gf0_A           35 DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED  114 (199)
T ss_dssp             CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGG
T ss_pred             CcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678888653 3344554  7899999999999999999999999999999999998888887777765543221 246


Q ss_pred             CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+.+ .....+.......                 .++.++++||++|.|++++++++.+.+
T Consensus       115 ~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          115 IPVMLVGNKCDETQREVDTREAQAVAQE-----------------WKCAFMETSAKMNYNVKELFQELLTLE  169 (199)
T ss_dssp             SCEEEEEECTTCSSCSSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCEEEEEECccCCccccCHHHHHHHHHH-----------------hCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            89999999999975 3444444443333                 245899999999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.86  E-value=7.7e-22  Score=137.13  Aligned_cols=128  Identities=17%  Similarity=0.205  Sum_probs=99.4

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++|||++++.+++.+ ..|+..+....  .+
T Consensus        55 ~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~  132 (205)
T 1gwn_A           55 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PN  132 (205)
T ss_dssp             SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TT
T ss_pred             CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CC
Confidence            4568898875 34555554  8999999999999999999999999999999999999999888 67877775432  47


Q ss_pred             CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec-cCCChHHHHH
Q psy2161          84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL-KRQGFGNGFR  148 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~  148 (155)
                      .|+++|+||+|+.+.              ++.++.......              .  ..+.+++|||+ +|.|++++|+
T Consensus       133 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~--~~~~~~e~SAk~~~~gv~~lf~  196 (205)
T 1gwn_A          133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ--------------I--GAATYIECSALQSENSVRDIFH  196 (205)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH--------------H--TCSEEEECCTTTCHHHHHHHHH
T ss_pred             CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH--------------c--CCCEEEEeeeccCCcCHHHHHH
Confidence            899999999998631              233333333222              1  12589999999 6899999999


Q ss_pred             HHHhh
Q psy2161         149 WLANY  153 (155)
Q Consensus       149 ~l~~~  153 (155)
                      ++.+.
T Consensus       197 ~l~~~  201 (205)
T 1gwn_A          197 VATLA  201 (205)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.1e-21  Score=133.90  Aligned_cols=142  Identities=13%  Similarity=0.181  Sum_probs=93.7

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.+.. ...+.+++  +.+.+|||||++.+...+..+++++|++++|+|++++.++..+ ..|+..+...  ..+
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~  129 (207)
T 2fv8_A           52 EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPN  129 (207)
T ss_dssp             -------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STT
T ss_pred             CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence            4567888876 35566776  7899999999999999999999999999999999999899888 5677766542  247


Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+.....+....+...........   ......+. .+++|||++|.|++++++++.+.+
T Consensus       130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGR---AMAVRIQAYDYLECSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH---HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHH---HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            899999999998653111111111110000000000   00011122 799999999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.86  E-value=2.6e-22  Score=136.08  Aligned_cols=128  Identities=15%  Similarity=0.235  Sum_probs=87.4

Q ss_pred             CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~   83 (155)
                      ..+.||++.. ...+..++  +.+++|||||++.+...+..+++++|++++|+|++++.+++.+. .|+..+....  .+
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~  112 (182)
T 3bwd_D           35 TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PG  112 (182)
T ss_dssp             ----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TT
T ss_pred             CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence            4667888764 23334444  77889999999999999999999999999999999999998886 6877775432  37


Q ss_pred             CcEEEEEeCCCcCCcC------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHHHHH
Q psy2161          84 VPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      .|+++|+||+|+.+..            ...+.......                 .+ ..+++|||++|.|++++|+++
T Consensus       113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~l  175 (182)
T 3bwd_D          113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL-----------------IGAPAYIECSSKSQENVKGVFDAA  175 (182)
T ss_dssp             CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH-----------------cCCCEEEEEECCCCCCHHHHHHHH
Confidence            8999999999986521            22333332222                 23 379999999999999999999


Q ss_pred             Hhhc
Q psy2161         151 ANYI  154 (155)
Q Consensus       151 ~~~i  154 (155)
                      .+.+
T Consensus       176 ~~~i  179 (182)
T 3bwd_D          176 IRVV  179 (182)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.85  E-value=5.2e-21  Score=131.60  Aligned_cols=130  Identities=16%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ....||.|..  ...+.+++  +++.+|||+|+.. ++.++..|++.+|++++|||++++.+|+.+..|+..+.......
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~  113 (192)
T 2cjw_A           34 DSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE  113 (192)
T ss_dssp             ----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence            3334556654  46677777  6788999999876 55677888999999999999999999999888887775433335


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.|+++|+||+|+..  .+...+.......                 .++.+++|||++|.|++++|+++.+.+
T Consensus       114 ~~piilV~NK~Dl~~~r~v~~~~~~~~a~~-----------------~~~~~~e~SA~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          114 DIPIILVGNKSDLVRXREVSVSEGRAXAVV-----------------FDXKFIETSAAVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCeEEEEEechhhhccccccHHHHHHHHHH-----------------hCCceEEeccccCCCHHHHHHHHHHHH
Confidence            789999999999864  3343333322222                 235799999999999999999998754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.85  E-value=3.9e-21  Score=132.42  Aligned_cols=108  Identities=17%  Similarity=0.221  Sum_probs=84.3

Q ss_pred             cCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHH---HHHHhCC-CCCCCcEEEEEeCC-CcCCcCCHHHHHhh
Q psy2161          33 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL---DSLLADD-ALTDVPILILGNKI-DIFDAASEDEVRHF  107 (155)
Q Consensus        33 t~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l---~~~~~~~-~~~~~piilv~nK~-Dl~~~~~~~~i~~~  107 (155)
                      .+||.+++++|++||+++|++|||+|+++.+.++ .+..+   ..++... .+.+.|+++++||. |+++..+..++.+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            3489999999999999999999999999887665 56666   4444443 24789999999995 78889999999999


Q ss_pred             hcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         108 FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++.            .+ .+.|.+..|||++|+|+.|.++||.+.+
T Consensus       188 L~L~------------~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          188 LHLN------------LL-NHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             TTGG------------GG-CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             cCCc------------CC-CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            9883            34 3789999999999999999999999865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.74  E-value=1.3e-22  Score=140.44  Aligned_cols=148  Identities=16%  Similarity=0.230  Sum_probs=99.1

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~   76 (155)
                      |.++.+ ..+.||.+.. ...+.+++  +.+++|||||++.+...+..+++++|++++|+|++++.+++... .|+..+.
T Consensus        50 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~  129 (204)
T 3th5_A           50 YTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR  129 (204)
Confidence            344443 4567787764 33444444  78889999999999999999999999999999999999998886 6776664


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...  .++|+++|+||+|+.+.....+..............   ........+. .+++|||++|.|++++|+++.+.+
T Consensus       130 ~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          130 HHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ---GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            322  378999999999986521111100000000000000   0001112233 789999999999999999998753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.84  E-value=6.9e-21  Score=140.08  Aligned_cols=133  Identities=18%  Similarity=0.270  Sum_probs=90.2

Q ss_pred             cccCCCCCceeEEEECCEEEEEEEcCCChhhHH---hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCC
Q psy2161           9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR---VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTD   83 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~   83 (155)
                      .+.||+|+....+. ..+++++||||||++|+.   .+..||++|+++|+|||+++.  +.....|+.+++..  ...++
T Consensus        30 ~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~  106 (331)
T 3r7w_B           30 YLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPS  106 (331)
T ss_dssp             TCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTT
T ss_pred             eecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCC
Confidence            36799999876653 348999999999999964   468999999999999999987  43333343332211  11357


Q ss_pred             CcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCccccccc-ccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREI-LQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++++||+|+.+....    .++.......         .... ....++.+++|||++ .||.++|..+++.+
T Consensus       107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~---------la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEE---------LLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHT---------TSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred             CcEEEEEECcccCchhhhhhHHHHhhHHHHHH---------HHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence            999999999999652111    1222211110         0000 112468999999998 59999999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.83  E-value=3.3e-20  Score=136.75  Aligned_cols=129  Identities=16%  Similarity=0.245  Sum_probs=99.1

Q ss_pred             CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCC
Q psy2161           7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALT   82 (155)
Q Consensus         7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~   82 (155)
                      ...+.||.+.. ...+..++  +.+++|||||++.+...+..+++++|++++|+|++++.++..+. .|+..+....  .
T Consensus       181 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~  258 (332)
T 2wkq_A          181 PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--P  258 (332)
T ss_dssp             CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--T
T ss_pred             CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--C
Confidence            34677888765 45566666  67779999999999999999999999999999999999998876 6777665432  3


Q ss_pred             CCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHH
Q psy2161          83 DVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~  147 (155)
                      ++|+++|+||+|+.+.              +...+.......                 .+. .+++|||++|.|++++|
T Consensus       259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~  321 (332)
T 2wkq_A          259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-----------------IGAVKYLECSALTQRGLKTVF  321 (332)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------TTCSEEEECCTTTCTTHHHHH
T ss_pred             CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH-----------------cCCcEEEEecCCCCcCHHHHH
Confidence            7899999999998542              222222222222                 233 79999999999999999


Q ss_pred             HHHHhhc
Q psy2161         148 RWLANYI  154 (155)
Q Consensus       148 ~~l~~~i  154 (155)
                      +++.+.+
T Consensus       322 ~~l~~~~  328 (332)
T 2wkq_A          322 DEAIRAV  328 (332)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.82  E-value=3.6e-20  Score=127.55  Aligned_cols=118  Identities=13%  Similarity=0.204  Sum_probs=83.9

Q ss_pred             EEEEEEEcCCChhhHHhH---HhhcCCCCEEEEEEECCCC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC
Q psy2161          26 IVFTTHDLGGHVQARRVW---RDYFPAVDAIVFIIDASDR--SRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS  100 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~---~~~~~~ad~ii~v~D~~~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~  100 (155)
                      +++++|||||++.|....   ..+++++|++++|||++++  +++..+..|+.++...  ..+.|+++|+||+|+.+...
T Consensus        69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~  146 (196)
T 3llu_A           69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDH  146 (196)
T ss_dssp             CCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHH
T ss_pred             eEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhh
Confidence            899999999999987665   8999999999999999987  5556666777766432  24789999999999864110


Q ss_pred             ----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         101 ----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       101 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                          ...+.......        .........++.+++|||++ .|++++|+.+.+.+
T Consensus       147 ~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          147 KIETQRDIHQRANDD--------LADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHH--------HHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhHHHhHHHHHHHHH--------HHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                11111111000        00000113568999999999 99999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=9.2e-21  Score=138.90  Aligned_cols=129  Identities=10%  Similarity=0.040  Sum_probs=96.9

Q ss_pred             CCCCC--CcccCCCCCceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhC
Q psy2161           3 KNDRT--AQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~~--~~~~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~   78 (155)
                      ..|.+  ..+.||+|.... +.. .+.++++||+  +++++.+++.|++++|++++|+|++++. ++..+..|+..+.. 
T Consensus        38 ~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-  113 (301)
T 1u0l_A           38 LRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-  113 (301)
T ss_dssp             ECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-
T ss_pred             EcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-
Confidence            34554  578899997643 333 2238999999  8899999999999999999999999987 68888889887643 


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                         .++|+++|+||+|+.+....+++.+....              +... +.+++|||++|.|++++|.++...
T Consensus       114 ---~~~piilv~NK~DL~~~~~v~~~~~~~~~--------------~~~~-~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          114 ---NELETVMVINKMDLYDEDDLRKVRELEEI--------------YSGL-YPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             ---TTCEEEEEECCGGGCCHHHHHHHHHHHHH--------------HTTT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             ---CCCCEEEEEeHHHcCCchhHHHHHHHHHH--------------Hhhh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence               37899999999999652211223333332              1112 579999999999999999998653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.81  E-value=1.5e-20  Score=128.30  Aligned_cols=132  Identities=11%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             CcccCCCCCceeEEEE-------CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC-CchHHHHHHHHHHHhCC
Q psy2161           8 AQHMPTLHPTSEELSM-------GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR-SRFPESKYELDSLLADD   79 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~-------~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~-~~~~~~~~~l~~~~~~~   79 (155)
                      ..+.||+|.......+       ..+.+.+|||+|++.+...+..++++++++++|+|++++ .++..+..|+.++....
T Consensus        31 ~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~  110 (184)
T 2zej_A           31 GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA  110 (184)
T ss_dssp             ------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC
T ss_pred             CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC
Confidence            4578999987544432       247999999999999999999999999999999999987 57888889998876432


Q ss_pred             CCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCC-ChHHHHHHHHhh
Q psy2161          80 ALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQ-GFGNGFRWLANY  153 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~-~i~~~~~~l~~~  153 (155)
                        .+.|+++|+||+|+.+.....    +....+..             .... ....++++||++|. |++++++.+.+.
T Consensus       111 --~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~  175 (184)
T 2zej_A          111 --SSSPVILVGTHLDVSDEKQRKACMSKITKELLN-------------KRGFPAIRDYHFVNATEESDALAKLRKTIINE  175 (184)
T ss_dssp             --TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT-------------CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred             --CCCcEEEEEECCCcccchhhHHHHHHHHHHHHH-------------hcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence              468999999999986521111    11111111             0111 11248999999997 999999998765


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       176 ~  176 (184)
T 2zej_A          176 S  176 (184)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.80  E-value=2.2e-19  Score=121.15  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=93.4

Q ss_pred             cccCCCCC--ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161           9 QHMPTLHP--TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus         9 ~~~pT~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      .+.|+.+.  ....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++..... ...+..+.    ..+.|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~l~~~~----~~~~p~  110 (178)
T 2lkc_A           36 QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQT-VEAINHAK----AANVPI  110 (178)
T ss_dssp             SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHH-HHHHHHHG----GGSCCE
T ss_pred             CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHH----hCCCCE
Confidence            34455544  456788899999999999999999999999999999999999987543322 23333332    236899


Q ss_pred             EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+||+|+.+. ...++...+.....        ........+.+++|||++|.|+++++++|.+.+
T Consensus       111 ilv~nK~Dl~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  169 (178)
T 2lkc_A          111 IVAINKMDKPEA-NPDRVMQELMEYNL--------VPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS  169 (178)
T ss_dssp             EEEEETTTSSCS-CHHHHHHHHTTTTC--------CBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             EEEEECccCCcC-CHHHHHHHHHhcCc--------ChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence            999999999753 33444444432110        000011237899999999999999999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.80  E-value=2.6e-19  Score=131.50  Aligned_cols=128  Identities=13%  Similarity=0.185  Sum_probs=97.6

Q ss_pred             cccCCCCCceeEEEE-CCEEEEEEEcCCChhh-----HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHH---HHHHhCC
Q psy2161           9 QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQA-----RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL---DSLLADD   79 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l---~~~~~~~   79 (155)
                      .+.||++.....+.+ +++++++|||||++.+     ...+..+++++|++++|+|++++.+++.+..|.   ..+... 
T Consensus        34 ~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-  112 (307)
T 3r7w_A           34 RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-  112 (307)
T ss_dssp             GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-
T ss_pred             CcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-
Confidence            577999998888887 5699999999999988     678899999999999999999999998886654   444322 


Q ss_pred             CCCCCcEEEEEeCCCcCCc--------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          80 ALTDVPILILGNKIDIFDA--------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                       ..++|+++|+||+|+.+.        ....++.+....              .+...+.+++|||++ .|+.++|..+.
T Consensus       113 -~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~--------------~g~~~~~~~~tSa~~-~~i~e~~~~iv  176 (307)
T 3r7w_A          113 -SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE--------------FGFPNLIGFPTSIWD-ESLYKAWSQIV  176 (307)
T ss_dssp             -CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT--------------TTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred             -CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH--------------cCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence             247999999999998651        111233333222              111247899999999 89999998877


Q ss_pred             hh
Q psy2161         152 NY  153 (155)
Q Consensus       152 ~~  153 (155)
                      +.
T Consensus       177 ~~  178 (307)
T 3r7w_A          177 CS  178 (307)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.80  E-value=3.6e-19  Score=118.16  Aligned_cols=115  Identities=13%  Similarity=0.159  Sum_probs=84.8

Q ss_pred             CceeEEEECCEEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      .....+..++..+.+|||||+..       +...+..+++.+|++++|+|++++.+..  ..++...+..   .+.|+++
T Consensus        39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~il  113 (161)
T 2dyk_A           39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVIL  113 (161)
T ss_dssp             CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEE
T ss_pred             ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEE
Confidence            34667778889999999999876       5667888999999999999998764442  2333333322   3689999


Q ss_pred             EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      |+||+|+.+.  .+++.+..                  ..++ .+++|||++|.|++++|+++.+.++
T Consensus       114 v~nK~Dl~~~--~~~~~~~~------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  161 (161)
T 2dyk_A          114 VATKVDDPKH--ELYLGPLY------------------GLGFGDPIPTSSEHARGLEELLEAIWERLP  161 (161)
T ss_dssp             EEECCCSGGG--GGGCGGGG------------------GGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEECcccccc--hHhHHHHH------------------hCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence            9999998653  11111111                  1223 5899999999999999999998875

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.79  E-value=1e-19  Score=130.84  Aligned_cols=108  Identities=17%  Similarity=0.231  Sum_probs=87.7

Q ss_pred             cCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH---HHHhCC-CCCCCcEEEEEeC-CCcCCcCCHHHHHhh
Q psy2161          33 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD---SLLADD-ALTDVPILILGNK-IDIFDAASEDEVRHF  107 (155)
Q Consensus        33 t~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~---~~~~~~-~~~~~piilv~nK-~Dl~~~~~~~~i~~~  107 (155)
                      .+||.+.+++|++||.++|++|||+|+++.+.++ .+..+.   .+++.. .+.+.|+++++|| .|+.+..+..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4688999999999999999999999999988765 444443   344322 2468999999996 689889999999999


Q ss_pred             hcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         108 FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++.            .+ .+.|.+..|||++|+|+.|.++||.+.+
T Consensus       273 L~L~------------~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          273 LHLN------------LL-NHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             TTGG------------GG-CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             cCCc------------cC-CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence            9883            34 3789999999999999999999999865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.78  E-value=5.7e-18  Score=119.14  Aligned_cols=125  Identities=18%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCC------hhh---HHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGH------VQA---RRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDAL   81 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~------~~~---~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~   81 (155)
                      |.......+..++..+.+|||||+      +..   ...+..++..+|++++|+|++++.++..  ...|+..+...  .
T Consensus        63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~  140 (228)
T 2qu8_A           63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--F  140 (228)
T ss_dssp             --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C
T ss_pred             ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--h
Confidence            344445666778899999999998      331   1234456788999999999999877742  34666666432  2


Q ss_pred             CCCcEEEEEeCCCcCC--cCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFD--AASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~--~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+  .+...   ........               ....+.+++|||++|.|++++|++|.+.+
T Consensus       141 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  203 (228)
T 2qu8_A          141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---------------VKNPIKFSSFSTLTGVGVEQAKITACELL  203 (228)
T ss_dssp             -CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH---------------CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh---------------cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence            4789999999999975  23322   12222221               00127899999999999999999998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.78  E-value=3.3e-18  Score=114.62  Aligned_cols=119  Identities=20%  Similarity=0.254  Sum_probs=83.9

Q ss_pred             cccCCCC--CceeEEEECCEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           9 QHMPTLH--PTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         9 ~~~pT~~--~~~~~~~~~~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ...|+..  .....+.+++..+++|||||+..+.      .....|++  +++++++|+|+++.   +....|+..+.. 
T Consensus        31 ~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~-  106 (165)
T 2wji_A           31 GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME-  106 (165)
T ss_dssp             C-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH-
T ss_pred             cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh-
Confidence            3445443  3466778889999999999988764      45566775  89999999999863   344557766653 


Q ss_pred             CCCCCCcEEEEEeCCCcCCc--CC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDA--AS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                         .++|+++|+||+|+...  +.  ...+...                    .+++++++||++|.|++++|+++.+.+
T Consensus       107 ---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------------------~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          107 ---MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------------------LGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             ---TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------------------HTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             ---cCCCEEEEEEchHhccccChhhHHHHHHHH--------------------hCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence               26899999999998541  11  1222221                    134789999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.78  E-value=1.9e-18  Score=119.07  Aligned_cols=129  Identities=19%  Similarity=0.307  Sum_probs=100.1

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||.|..  ...+.+++  +.+.+||++|++.++..+..++++++++++|+|+++..+++.+..|+..+... ...+
T Consensus        32 ~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~  110 (199)
T 2f9l_A           32 LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSN  110 (199)
T ss_dssp             C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence            3566888764  56777887  67899999999999888999999999999999999988888888888766432 2246


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++++||+|+.+  .....+.......                 .++.++++||+++.|++++++++.+.+
T Consensus       111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          111 IVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSFIETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999965  3344444444333                 346789999999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.78  E-value=1e-18  Score=119.63  Aligned_cols=126  Identities=17%  Similarity=0.199  Sum_probs=82.8

Q ss_pred             CCcccCCCCCc--eeEEEECCEEEEEEEcCC----------ChhhHHhHHhhcCCC---CEEEEEEECCCCCchHHHHHH
Q psy2161           7 TAQHMPTLHPT--SEELSMGDIVFTTHDLGG----------HVQARRVWRDYFPAV---DAIVFIIDASDRSRFPESKYE   71 (155)
Q Consensus         7 ~~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G----------~~~~~~~~~~~~~~a---d~ii~v~D~~~~~~~~~~~~~   71 (155)
                      ...+.||.|.+  ...+..+ .++.+|||||          +..+...+..+++.+   |++++|+|++++.++.... +
T Consensus        49 ~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~  126 (195)
T 1svi_A           49 LARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-M  126 (195)
T ss_dssp             -----------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-H
T ss_pred             ccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-H
Confidence            34556677654  2333443 3799999999          788888888888877   9999999999877775532 1


Q ss_pred             HHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161          72 LDSLLADDALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      +..+ ..   .+.|+++|+||+|+.+.....    ++.+.+..                .....++++||++|.|+++++
T Consensus       127 ~~~~-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gv~~l~  186 (195)
T 1svi_A          127 YEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI----------------DPEDELILFSSETKKGKDEAW  186 (195)
T ss_dssp             HHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC----------------CTTSEEEECCTTTCTTHHHHH
T ss_pred             HHHH-HH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc----------------cCCCceEEEEccCCCCHHHHH
Confidence            2222 11   368999999999997633222    22222221                135689999999999999999


Q ss_pred             HHHHhhc
Q psy2161         148 RWLANYI  154 (155)
Q Consensus       148 ~~l~~~i  154 (155)
                      +++.+.+
T Consensus       187 ~~l~~~l  193 (195)
T 1svi_A          187 GAIKKMI  193 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.78  E-value=8.9e-19  Score=118.35  Aligned_cols=116  Identities=17%  Similarity=0.224  Sum_probs=85.1

Q ss_pred             CCceeEEEECCEEEEEEEcCCChhh----HH----hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          15 HPTSEELSMGDIVFTTHDLGGHVQA----RR----VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        15 ~~~~~~~~~~~~~~~~~Dt~G~~~~----~~----~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ......+.+++..+.+|||||+..+    ..    ....+++++|++++|+|++++.++.. ..|+..+.... ..++|+
T Consensus        41 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~  118 (172)
T 2gj8_A           41 DVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPI  118 (172)
T ss_dssp             SCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCE
T ss_pred             ceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCE
Confidence            3446778888999999999998542    11    12246889999999999999888763 46666665432 246899


Q ss_pred             EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+||+|+.+..        ...              .......+++|||++|.|++++|+++.+.+
T Consensus       119 ilv~NK~Dl~~~~--------~~~--------------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          119 TVVRNKADITGET--------LGM--------------SEVNGHALIRLSARTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             EEEEECHHHHCCC--------CEE--------------EEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEEEECccCCcch--------hhh--------------hhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999985321        000              111356899999999999999999998865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.77  E-value=9.1e-19  Score=119.65  Aligned_cols=133  Identities=15%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             CCCCCCcccCCCCCcee-EEEECCEEEEEEEcCC----------ChhhHHhHHhhcCCC---CEEEEEEECCCCCchHH-
Q psy2161           3 KNDRTAQHMPTLHPTSE-ELSMGDIVFTTHDLGG----------HVQARRVWRDYFPAV---DAIVFIIDASDRSRFPE-   67 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~~~-~~~~~~~~~~~~Dt~G----------~~~~~~~~~~~~~~a---d~ii~v~D~~~~~~~~~-   67 (155)
                      .++....+.||.+.+.. .+...+.++.+|||||          +..+...+..+++.+   +++++|+|+++..+... 
T Consensus        44 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~  123 (195)
T 3pqc_A           44 FNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL  123 (195)
T ss_dssp             HTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred             HcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH
Confidence            34456667788876532 2222345788999999          777888888888876   99999999987544432 


Q ss_pred             -HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCCChHH
Q psy2161          68 -SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        68 -~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~  145 (155)
                       ...|+...       +.|+++|+||+|+.+........+.....             +.. ..+++++|||++|.|+++
T Consensus       124 ~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~Sa~~~~gv~~  183 (195)
T 3pqc_A          124 MMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKV-------------FSKYGEYTIIPTSSVTGEGISE  183 (195)
T ss_dssp             HHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHH-------------HHSSCCSCEEECCTTTCTTHHH
T ss_pred             HHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHH-------------HhhcCCCceEEEecCCCCCHHH
Confidence             22333322       68999999999997533333222222110             111 346799999999999999


Q ss_pred             HHHHHHhhcC
Q psy2161         146 GFRWLANYID  155 (155)
Q Consensus       146 ~~~~l~~~i~  155 (155)
                      +|+++.+.+.
T Consensus       184 l~~~l~~~l~  193 (195)
T 3pqc_A          184 LLDLISTLLK  193 (195)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.7e-19  Score=129.24  Aligned_cols=114  Identities=16%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             CEEEEEEE-----------------------cCCChhhHHhHHhhcC---------------------CCCEEEEEEECC
Q psy2161          25 DIVFTTHD-----------------------LGGHVQARRVWRDYFP---------------------AVDAIVFIIDAS   60 (155)
Q Consensus        25 ~~~~~~~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~ii~v~D~~   60 (155)
                      .+++++||                       ++|++++..++..+++                     +||++++|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            38899999                       7777778888888887                     799999999999


Q ss_pred             CC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec
Q psy2161          61 DR--SRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL  138 (155)
Q Consensus        61 ~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  138 (155)
                      ++  .+|+.+..|+..+.......++|+++|+||+|+.+....++.......                ..++.+++|||+
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----------------~~~~~~~e~SAk  237 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----------------KKNLQVVETSAR  237 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----------------SSSCCEEECBTT
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----------------cCCCeEEEEECC
Confidence            98  999999999988865422346899999999998642112233222221                124679999999


Q ss_pred             cCCChHHHHHHHHhhc
Q psy2161         139 KRQGFGNGFRWLANYI  154 (155)
Q Consensus       139 ~~~~i~~~~~~l~~~i  154 (155)
                      +|.|++++|++|.+.+
T Consensus       238 ~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          238 SNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.76  E-value=1.5e-17  Score=122.18  Aligned_cols=125  Identities=17%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             CCCCceeEEEEC-CEEEEEEEcCCChh----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161          13 TLHPTSEELSMG-DIVFTTHDLGGHVQ----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus        13 T~~~~~~~~~~~-~~~~~~~Dt~G~~~----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.......+..+ +.++.+|||||+..          +...+..+++.+|++++|+|+++..++.....|+..+..    
T Consensus        45 T~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----  120 (308)
T 3iev_A           45 TRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----  120 (308)
T ss_dssp             CCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----
T ss_pred             eeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----
Confidence            333345566777 89999999999843          446778889999999999999998888877766776643    


Q ss_pred             CCCcEEEEEeCCCcC-CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          82 TDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        82 ~~~piilv~nK~Dl~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      .+.|+++|+||+|+. +.....+....+..              .......++++||++|.|++++++++.+.++
T Consensus       121 ~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~--------------~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          121 LNKPVIVVINKIDKIGPAKNVLPLIDEIHK--------------KHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             GCCCEEEEEECGGGSSSGGGGHHHHHHHHH--------------HCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEEECccCCCCHHHHHHHHHHHHH--------------hccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            368999999999986 32222222222221              0112357999999999999999999988763

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.74  E-value=9.5e-18  Score=115.08  Aligned_cols=129  Identities=19%  Similarity=0.278  Sum_probs=101.4

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      ..+.||++..  ...+.+++  +.+++||++|++++...+..+++.++++++|+|.++..+++.+..|+..+... ...+
T Consensus        56 ~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~  134 (191)
T 1oix_A           56 LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSN  134 (191)
T ss_dssp             CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence            4677888864  56777887  56778999999999889999999999999999999888888877788766432 2246


Q ss_pred             CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++++||+|+.+  .....+.......                 .++.++++||+++.|++++++++.+.+
T Consensus       135 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          135 IVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999865  3344444443333                 346789999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.72  E-value=3.3e-17  Score=111.48  Aligned_cols=119  Identities=20%  Similarity=0.263  Sum_probs=87.7

Q ss_pred             cccCCCCC--ceeEEEECCEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           9 QHMPTLHP--TSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         9 ~~~pT~~~--~~~~~~~~~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ...|+...  ....+.+++..+.+|||||+..+.      ..+..+++  .++++++|+|.++   ++....|+..+.. 
T Consensus        35 ~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-  110 (188)
T 2wjg_A           35 GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-  110 (188)
T ss_dssp             EECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-
T ss_pred             cCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-
Confidence            34455443  466778889999999999987763      45667775  5999999999874   5666677777753 


Q ss_pred             CCCCCCcEEEEEeCCCcCCc--C--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDA--A--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                         .+.|+++|+||+|+...  .  ...++.+.                    .++.++++||++|.|++++|+++.+.+
T Consensus       111 ---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------------------~~~~~~~~Sa~~~~~v~~l~~~i~~~~  167 (188)
T 2wjg_A          111 ---MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------------------LGVKVVPLSAAKKMGIEELKKAISIAV  167 (188)
T ss_dssp             ---TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------------------HTSCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ---cCCCEEEEEEhhhccccccchHHHHHHHHH--------------------hCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence               36899999999998542  1  12222222                    234799999999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.71  E-value=3.8e-18  Score=116.19  Aligned_cols=134  Identities=13%  Similarity=0.078  Sum_probs=87.2

Q ss_pred             CcccCCCCCceeEEEECCEEEEEEEcCC-----------ChhhHHhHHhhcCC-CCEEEEEEECCCCCchHHH-HHHHHH
Q psy2161           8 AQHMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFPA-VDAIVFIIDASDRSRFPES-KYELDS   74 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G-----------~~~~~~~~~~~~~~-ad~ii~v~D~~~~~~~~~~-~~~l~~   74 (155)
                      ..+.|+.......+.++  .+.+|||||           ++.+...+..++++ ++++++|+++.+..++..+ ..|...
T Consensus        28 ~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~  105 (190)
T 2cxx_A           28 RGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKR  105 (190)
T ss_dssp             SSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHT
T ss_pred             cCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhcc
Confidence            34566666666666665  789999999           67788888888887 7766666666666677665 445432


Q ss_pred             --------HHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161          75 --------LLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        75 --------~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  146 (155)
                              +.......++|+++|+||+|+.+.. ..+........+.          ........+++|||++|.|++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~~l  174 (190)
T 2cxx_A          106 GEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEV----------PLSEIDKVFIPISAKFGDNIERL  174 (190)
T ss_dssp             TCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTC----------CGGGHHHHEEECCTTTCTTHHHH
T ss_pred             CccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhh----------hhhccCCcEEEEecCCCCCHHHH
Confidence                    1111112468999999999997532 2223332222100          00001235899999999999999


Q ss_pred             HHHHHhhc
Q psy2161         147 FRWLANYI  154 (155)
Q Consensus       147 ~~~l~~~i  154 (155)
                      |+++.+.+
T Consensus       175 ~~~l~~~~  182 (190)
T 2cxx_A          175 KNRIFEVI  182 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.71  E-value=4e-17  Score=114.03  Aligned_cols=117  Identities=17%  Similarity=0.270  Sum_probs=78.3

Q ss_pred             CCEEEEEEEcCC----------ChhhHHhHHhhcCC---CCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          24 GDIVFTTHDLGG----------HVQARRVWRDYFPA---VDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        24 ~~~~~~~~Dt~G----------~~~~~~~~~~~~~~---ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      ++..+.+|||||          ++.+...+..|++.   +|++++|+|++++.+. ....++..+..    .++|+++|+
T Consensus        77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~----~~~p~i~v~  151 (223)
T 4dhe_A           77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP----TGKPIHSLL  151 (223)
T ss_dssp             TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG----GCCCEEEEE
T ss_pred             CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh----cCCCEEEEE
Confidence            358999999999          45566677777766   7889999999875332 22344444432    468999999


Q ss_pred             eCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          91 NKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        91 nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ||+|+.+....    ..+.+.+...          .........+++++||++|.|+++++++|.+.++
T Consensus       152 nK~Dl~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  210 (223)
T 4dhe_A          152 TKCDKLTRQESINALRATQKSLDAY----------RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR  210 (223)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHH----------HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred             eccccCChhhHHHHHHHHHHHHHhh----------hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence            99998652221    1122222110          0000024578999999999999999999988653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.71  E-value=1e-16  Score=117.41  Aligned_cols=117  Identities=21%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             eeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...+..++.++++|||||...        +......+++.+|++++|+|++++.+..  ..|+.+.+... ..+.|+++|
T Consensus        47 ~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV  123 (301)
T 1wf3_A           47 RGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLV  123 (301)
T ss_dssp             EEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEE
T ss_pred             EEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEE
Confidence            444566789999999999765        5667788999999999999998764443  34554333322 146899999


Q ss_pred             EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +||+|+.+...  .+...+..              + .....++++||++|.|++++++++.+.+
T Consensus       124 ~NK~Dl~~~~~--~~~~~~~~--------------~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          124 GNKLDAAKYPE--EAMKAYHE--------------L-LPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             EECGGGCSSHH--HHHHHHHH--------------T-STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             EECcccCCchH--HHHHHHHH--------------h-cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            99999864211  02222221              1 1224689999999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.71  E-value=4.6e-18  Score=133.23  Aligned_cols=125  Identities=14%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             CcccCCCCCceeEE--------EEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           8 AQHMPTLHPTSEEL--------SMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         8 ~~~~pT~~~~~~~~--------~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      ..+.||+|....+.        ..+    ++++.+|||||++.+...+..+++.+|++++|+|+++.   +....|+..+
T Consensus        68 ~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l  144 (535)
T 3dpu_A           68 PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHI  144 (535)
T ss_dssp             -------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHH
T ss_pred             CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHH
Confidence            46779999876543        222    48999999999999999999999999999999999764   5556777777


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ....  .+.|+++|+||+|+.+  .+..+++...+..                 .+..++++||++|.|++++++++.+.
T Consensus       145 ~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~vSA~~g~gi~eL~~~l~~~  205 (535)
T 3dpu_A          145 EKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----------------IENRFHRISCKNGDGVESIAKSLKSA  205 (535)
T ss_dssp             HHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----------------GTTCEEECCC-----CTTHHHHHHHH
T ss_pred             HHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----------------cCCceEEEecCcccCHHHHHHHHHHH
Confidence            6433  3689999999999875  3455555555544                 23469999999999999999999875


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       206 ~  206 (535)
T 3dpu_A          206 V  206 (535)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.70  E-value=1.8e-17  Score=118.86  Aligned_cols=117  Identities=18%  Similarity=0.253  Sum_probs=84.2

Q ss_pred             ccCCCCC--ceeEEEECCEEEEEEEcCCChhhHH----------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161          10 HMPTLHP--TSEELSMGDIVFTTHDLGGHVQARR----------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus        10 ~~pT~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      ..|+...  ....+.+++..+.+|||||..++.+          .+..|+  +++|++++|+|+++.++..   .+...+
T Consensus        30 ~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~---~l~~~l  106 (256)
T 3iby_A           30 NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL---YLTSQL  106 (256)
T ss_dssp             ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHH---HHHHHH
T ss_pred             CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHH---HHHHHH
Confidence            3454443  3667778899999999999876653          567777  8999999999998744333   333333


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          76 LADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      . .   .++|+++|+||+|+...    .....+.+.+                    +++++++||++|.|++++++++.
T Consensus       107 ~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------------------g~~vi~~SA~~g~gi~el~~~i~  162 (256)
T 3iby_A          107 F-E---LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------------------GCSVIPIQAHKNIGIPALQQSLL  162 (256)
T ss_dssp             T-T---SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------------------CSCEEECBGGGTBSHHHHHHHHH
T ss_pred             H-H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------------------CCCEEEEECCCCCCHHHHHHHHH
Confidence            2 1   26899999999998542    2233333333                    34799999999999999999997


Q ss_pred             hh
Q psy2161         152 NY  153 (155)
Q Consensus       152 ~~  153 (155)
                      +.
T Consensus       163 ~~  164 (256)
T 3iby_A          163 HC  164 (256)
T ss_dssp             TC
T ss_pred             hh
Confidence            63

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.70  E-value=1.9e-16  Score=122.44  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=88.4

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCCh-hhH--------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHV-QAR--------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~-~~~--------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      |..+....+.+++..+.+|||||.. .+.        .....+++.||++++|+|++++.+++.. .+++.+      .+
T Consensus       278 T~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l------~~  350 (482)
T 1xzp_A          278 TRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI------KN  350 (482)
T ss_dssp             SSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TT
T ss_pred             eeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh------cC
Confidence            5556678889999999999999987 442        2345678899999999999988777553 233332      36


Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+....+++...+..                  ..+++++||++|.|+++++++|.+.+
T Consensus       351 ~piivV~NK~DL~~~~~~~~~~~~~~~------------------~~~~i~iSAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          351 KRYLVVINKVDVVEKINEEEIKNKLGT------------------DRHMVKISALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             SSEEEEEEECSSCCCCCHHHHHHHHTC------------------STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred             CCEEEEEECcccccccCHHHHHHHhcC------------------CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999765554555443321                  23589999999999999999998753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.70  E-value=1.2e-16  Score=123.53  Aligned_cols=118  Identities=17%  Similarity=0.123  Sum_probs=75.3

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhH--------HhhcCCCCEEEEEEECCCCCchHHH---HHHHHHHHhCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVW--------RDYFPAVDAIVFIIDASDRSRFPES---KYELDSLLADDAL   81 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~ad~ii~v~D~~~~~~~~~~---~~~l~~~~~~~~~   81 (155)
                      |.......+.++++.+.+|||||+..+...+        ..+++++|++++|+|++++.++...   ..|+..+      
T Consensus       268 T~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------  341 (476)
T 3gee_A          268 TRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------  341 (476)
T ss_dssp             -----CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------
T ss_pred             eEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------
Confidence            3334567888899999999999998766443        4478999999999999998887543   3333333      


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++|+++|+||+|+.+......  +.+..              .  ...+++++||++|.|++++++++.+.+
T Consensus       342 ~~~piIvV~NK~Dl~~~~~~~~--~~l~~--------------~--~~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          342 PAAKFLTVANKLDRAANADALI--RAIAD--------------G--TGTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             TTSEEEEEEECTTSCTTTHHHH--HHHHH--------------H--HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             CCCCEEEEEECcCCCCccchhH--HHHHh--------------c--CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence            2689999999999975332211  11111              0  013689999999999999999998754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.69  E-value=2.1e-16  Score=119.94  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=86.4

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE----  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~----  101 (155)
                      .++.+|||||++.|...+..+++.+|++++|+|+++..++.....++..+...   ..+|+++|+||+|+.+....    
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence            78999999999999999999999999999999999877677777666555321   23699999999998652211    


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++.+.+..              .....++++++||++|.|+++++++|.+.+
T Consensus       152 ~~i~~~l~~--------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          152 RQIKQFTKG--------------TWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHh--------------hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            222222222              222456899999999999999999998765

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.68  E-value=3e-16  Score=124.01  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=88.3

Q ss_pred             eeEEEEC-----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          18 SEELSMG-----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        18 ~~~~~~~-----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      ...+.+.     ++.+++|||||+..|...+..+++.+|++++|+|+++..+......|.....     .++|+++|+||
T Consensus        58 ~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNK  132 (599)
T 3cb4_D           58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNK  132 (599)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEEC
T ss_pred             EEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeec
Confidence            3455553     2899999999999999999999999999999999998777766666655442     36899999999


Q ss_pred             CCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          93 IDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        93 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +|+.+.. ..++...+...             +......++++||++|.|++++++++.+.++
T Consensus       133 iDl~~a~-~~~v~~ei~~~-------------lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          133 IDLPAAD-PERVAEEIEDI-------------VGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTSTTCC-HHHHHHHHHHH-------------TCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             cCccccc-HHHHHHHHHHH-------------hCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            9997633 22222222110             0111124799999999999999999988764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.68  E-value=4e-16  Score=123.21  Aligned_cols=111  Identities=23%  Similarity=0.218  Sum_probs=84.9

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR  105 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~  105 (155)
                      +.+++|||||+..|...+..+++.+|++++|+|+++..+......|.....     .++|+++|+||+|+.+.. ...+.
T Consensus        73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~  146 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVK  146 (600)
T ss_dssp             EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHH
T ss_pred             EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHH
Confidence            899999999999999999999999999999999998877766666654442     368999999999997632 33322


Q ss_pred             hhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         106 HFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +.+...             +......++++||++|.|++++++++.+.++
T Consensus       147 ~el~~~-------------lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          147 KQIEEV-------------LGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHT-------------SCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHh-------------hCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            222210             1111124899999999999999999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.68  E-value=1.7e-16  Score=121.73  Aligned_cols=115  Identities=17%  Similarity=0.253  Sum_probs=82.0

Q ss_pred             CceeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      .....+.+++.++++|||||...         ++..+..++++||++++|+|+++..+...  .++...+..   .++|+
T Consensus        39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~  113 (439)
T 1mky_A           39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDT  113 (439)
T ss_dssp             CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCE
T ss_pred             eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCE
Confidence            34678888999999999999653         56678889999999999999987654432  233333322   26899


Q ss_pred             EEEEeCCCcCCcCCHHHH-HhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          87 LILGNKIDIFDAASEDEV-RHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+||+|+.+.. ..++ .++...                  ++ .++++||++|.|+.++++++.+.+
T Consensus       114 ilv~NK~D~~~~~-~~~~~~~~~~l------------------g~~~~~~iSA~~g~gv~~L~~~i~~~l  164 (439)
T 1mky_A          114 ILVANKAENLREF-EREVKPELYSL------------------GFGEPIPVSAEHNINLDTMLETIIKKL  164 (439)
T ss_dssp             EEEEESCCSHHHH-HHHTHHHHGGG------------------SSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcccc-HHHHHHHHHhc------------------CCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence            9999999975321 1122 222211                  12 478999999999999999998654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.68  E-value=1.1e-16  Score=114.77  Aligned_cols=109  Identities=17%  Similarity=0.274  Sum_probs=80.2

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHH------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARR------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...+..++..+.+|||||+.++.+      ....|+  .++|++++|+|+++.++   ...|...+..    .++|+++|
T Consensus        44 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv  116 (258)
T 3a1s_A           44 EGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILA  116 (258)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEE
T ss_pred             EEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEE
Confidence            556667789999999999877653      335555  58999999999987543   3446666643    26899999


Q ss_pred             EeCCCcCCc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          90 GNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        90 ~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +||+|+.+.    .....+...+                    +++++++||++|.|++++++++.+.
T Consensus       117 ~NK~Dl~~~~~i~~~~~~l~~~l--------------------g~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A          117 MTAIDEAKKTGMKIDRYELQKHL--------------------GIPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             EECHHHHHHTTCCBCHHHHHHHH--------------------CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EECcCCCCccchHHHHHHHHHHc--------------------CCCEEEEEeeCCcCHHHHHHHHHHH
Confidence            999998541    1222333322                    3479999999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.67  E-value=6.3e-17  Score=120.31  Aligned_cols=126  Identities=25%  Similarity=0.349  Sum_probs=91.7

Q ss_pred             CCCCCceeEEEECC-EEEEEEEcCCChh----hHHhHHhhc---CCCCEEEEEEECCC---CCchHHHHHHHHHHHhCC-
Q psy2161          12 PTLHPTSEELSMGD-IVFTTHDLGGHVQ----ARRVWRDYF---PAVDAIVFIIDASD---RSRFPESKYELDSLLADD-   79 (155)
Q Consensus        12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~----~~~~~~~~~---~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~-   79 (155)
                      +|..++...+.+++ ..+.+|||||...    +..++..|+   +.++++++|+|+++   .++++....|+.++.... 
T Consensus       191 tTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~  270 (342)
T 1lnz_A          191 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL  270 (342)
T ss_dssp             SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred             cccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence            67777777888876 8999999999543    333444444   45999999999998   778888888888886543 


Q ss_pred             CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...++|+++|+||+|+.+..  +.+......              +. ....++++||+++.|+++++++|.+.+
T Consensus       271 ~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~--------------l~-~~~~v~~iSA~tg~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          271 RLTERPQIIVANKMDMPEAA--ENLEAFKEK--------------LT-DDYPVFPISAVTREGLRELLFEVANQL  328 (342)
T ss_dssp             STTTSCBCBEEECTTSTTHH--HHHHHHHHH--------------CC-SCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             hhcCCCEEEEEECccCCCCH--HHHHHHHHH--------------hh-cCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence            23579999999999986421  122222111              11 115689999999999999999998765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.67  E-value=1.4e-16  Score=121.41  Aligned_cols=118  Identities=17%  Similarity=0.264  Sum_probs=86.0

Q ss_pred             CCCCceeEEEECC-EEEEEEEcCCChhhHHh-------HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          13 TLHPTSEELSMGD-IVFTTHDLGGHVQARRV-------WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        13 T~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~-------~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      |.......+.+.+ .++++|||||+..+...       +..+++.+|++++|+|++.   ......|+..+...    ++
T Consensus        69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~  141 (423)
T 3qq5_A           69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EI  141 (423)
T ss_dssp             -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TC
T ss_pred             eeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CC
Confidence            4445577788877 49999999998765432       5668899999999999832   23335566666433    68


Q ss_pred             cEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+....+........                 .++.++++||++|.|++++++++.+.+
T Consensus       142 piIvV~NK~Dl~~~~~~~~~~~l~~~-----------------~g~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          142 PFVVVVNKIDVLGEKAEELKGLYESR-----------------YEAKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             CEEEECCCCTTTTCCCTHHHHHSSCC-----------------TTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             CEEEEEeCcCCCCccHHHHHHHHHHH-----------------cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            99999999999764443333322222                 345899999999999999999999876

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.67  E-value=7.1e-17  Score=116.78  Aligned_cols=111  Identities=20%  Similarity=0.208  Sum_probs=79.6

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhH----------HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQAR----------RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      ....+.+++..+.+|||||+..+.          ..+..|+  +++|++++|+|+++.++..   .+...+...    ++
T Consensus        41 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~----~~  113 (274)
T 3i8s_A           41 KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLEL----GI  113 (274)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH----TC
T ss_pred             EEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc----CC
Confidence            356677778999999999987654          2344444  7999999999998754433   333333321    68


Q ss_pred             cEEEEEeCCCcCCc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          85 PILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        85 piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+++|+||+|+.+.    .....+.+.+                    +++++++||++|.|++++++++.+.+
T Consensus       114 p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------------------g~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          114 PCIVALNMLDIAEKQNIRIEIDALSARL--------------------GCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             CEEEEEECHHHHHHTTEEECHHHHHHHH--------------------TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             CEEEEEECccchhhhhHHHHHHHHHHhc--------------------CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99999999998542    1223333332                    24799999999999999999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.67  E-value=1.9e-15  Score=114.82  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC----CH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA----SE  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~----~~  101 (155)
                      ..+.+|||||++.|...+...+..+|++++|+|+++..........+..+..   ....|+++++||+|+.+..    ..
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHH
Confidence            7899999999999999998889999999999999865323333333332211   1235899999999997522    23


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++.+.+..              .....++++++||++|.|+++++++|.+.+
T Consensus       158 ~~i~~~l~~--------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          158 EQIKEFVKG--------------TIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHHTT--------------STTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHhh--------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            445554443              122356899999999999999999998755

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.66  E-value=2.4e-16  Score=121.36  Aligned_cols=121  Identities=11%  Similarity=0.091  Sum_probs=87.3

Q ss_pred             ceeEEEECCEEEEEEEcCC----------ChhhHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161          17 TSEELSMGDIVFTTHDLGG----------HVQARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP   85 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G----------~~~~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p   85 (155)
                      ....+.+++.++++|||||          ++.+...+. .+++.||++++|+|+++..+. ....|+..+..    .++|
T Consensus       234 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~----~~~~  308 (456)
T 4dcu_A          234 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE----AGKA  308 (456)
T ss_dssp             TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH----TTCE
T ss_pred             EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH----cCCC
Confidence            4677888999999999999          677776655 478999999999999875432 22344444433    3689


Q ss_pred             EEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          86 ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        86 iilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++|+||+|+.+  ....+++.+.+...            -......++++|||++|.|++++|+++.+.+
T Consensus       309 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  367 (456)
T 4dcu_A          309 VVIVVNKWDAVDKDESTMKEFEENIRDH------------FQFLDYAPILFMSALTKKRIHTLMPAIIKAS  367 (456)
T ss_dssp             EEEEEECGGGSCCCSSHHHHHHHHHHHH------------CGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             EEEEEEChhcCCCchHHHHHHHHHHHHh------------cccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence            999999999975  33344444444321            0011245799999999999999999987643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.66  E-value=5.7e-16  Score=115.85  Aligned_cols=124  Identities=18%  Similarity=0.222  Sum_probs=89.8

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhh---------HHhHHhhcCCCCEEEEEEECCCCC--chHHHHHHHHHHHhCCC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQA---------RRVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDSLLADDA   80 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~~~~~~ad~ii~v~D~~~~~--~~~~~~~~l~~~~~~~~   80 (155)
                      +|.+.....+..++..+.+|||||....         ......+...+|++++|+|++++.  ++.....|+..+.... 
T Consensus       200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-  278 (357)
T 2e87_A          200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-  278 (357)
T ss_dssp             CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-
T ss_pred             eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-
Confidence            4555666777778899999999997432         122334556799999999998876  6777778888876432 


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                       .++|+++|+||+|+.+.....++...+..                 .++++++|||++|.|++++++++.+.+
T Consensus       279 -~~~piilV~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~iSA~~g~gi~~l~~~i~~~l  334 (357)
T 2e87_A          279 -KDLPFLVVINKIDVADEENIKRLEKFVKE-----------------KGLNPIKISALKGTGIDLVKEEIIKTL  334 (357)
T ss_dssp             -TTSCEEEEECCTTTCCHHHHHHHHHHHHH-----------------TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred             -CCCCEEEEEECcccCChHHHHHHHHHHHh-----------------cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence             27899999999998653222223222221                 245789999999999999999998754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.66  E-value=2.1e-15  Score=117.79  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      .|+......+.++++++++|||||+..|...+..+++.+|++++|+|+++..+......| ..+. .   .++|+++|+|
T Consensus        68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~-~---~~iPiivviN  142 (528)
T 3tr5_A           68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR-L---RHTPIMTFIN  142 (528)
T ss_dssp             CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH-T---TTCCEEEEEE
T ss_pred             eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH-H---cCCCEEEEEe
Confidence            355666788889999999999999999999999999999999999999987666554433 3332 2   3689999999


Q ss_pred             CCCcCCc
Q psy2161          92 KIDIFDA   98 (155)
Q Consensus        92 K~Dl~~~   98 (155)
                      |+|+...
T Consensus       143 K~Dl~~~  149 (528)
T 3tr5_A          143 KMDRDTR  149 (528)
T ss_dssp             CTTSCCS
T ss_pred             CCCCccc
Confidence            9999653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.66  E-value=2.3e-16  Score=113.99  Aligned_cols=103  Identities=25%  Similarity=0.383  Sum_probs=76.6

Q ss_pred             CEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      +..+++|||||+.++.      ..+..|+.  ++|++++|+|+++.+   ....|...+..    .++|+++|+||+|+.
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVL  120 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHH
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhC
Confidence            6889999999998765      46677776  699999999998743   33456555543    368999999999985


Q ss_pred             Cc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          97 DA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        97 ~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..    .....+...+                    +++++++||++|.|++++|+++.+.+
T Consensus       121 ~~~~~~~~~~~l~~~l--------------------g~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          121 DGQGKKINVDKLSYHL--------------------GVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             HHTTCCCCHHHHHHHH--------------------TSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             CcCCcHHHHHHHHHHc--------------------CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            41    1222222222                    34799999999999999999998753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.65  E-value=4.3e-17  Score=124.89  Aligned_cols=126  Identities=20%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCCh--------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHH
Q psy2161           4 NDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE   71 (155)
Q Consensus         4 ~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~--------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~   71 (155)
                      +++...+.+|.|.+    ...+.+++.++.+|||||+.        .+...+..+++.||++++|+|+++..+...  .+
T Consensus        25 ~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~  102 (436)
T 2hjg_A           25 GERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EE  102 (436)
T ss_dssp             EEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HH
T ss_pred             CCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HH
Confidence            33444455666664    34445567899999999985        677888899999999999999988666543  45


Q ss_pred             HHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHH
Q psy2161          72 LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      +...+..   .++|+++|+||+|+....  .++.++.                  ..++ .++++||++|.|+.++++++
T Consensus       103 ~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~------------------~lg~~~~~~iSA~~g~gv~~L~~~i  159 (436)
T 2hjg_A          103 VAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY------------------SLGFGEPYPISGTHGLGLGDLLDAV  159 (436)
T ss_dssp             HHHHHTT---CCSCEEEEEECCCC-------CCCSSG------------------GGSSCCCEECBTTTTBTHHHHHHHH
T ss_pred             HHHHHHH---cCCCEEEEEECccCccch--hhHHHHH------------------HcCCCCeEEEeCcCCCChHHHHHHH
Confidence            5555543   478999999999985421  0000111                  1112 57999999999999999999


Q ss_pred             Hhhc
Q psy2161         151 ANYI  154 (155)
Q Consensus       151 ~~~i  154 (155)
                      .+.+
T Consensus       160 ~~~l  163 (436)
T 2hjg_A          160 AEHF  163 (436)
T ss_dssp             HHTG
T ss_pred             HHhc
Confidence            8765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.64  E-value=1.2e-15  Score=118.25  Aligned_cols=124  Identities=13%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      .|+......+.++++.+++|||||++.|...+..+++.+|++++|+|+++... ......+..+..    .++|+++|+|
T Consensus        59 iTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~----~~ip~IvviN  133 (482)
T 1wb1_A           59 ITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-TQTGEHMLILDH----FNIPIIVVIT  133 (482)
T ss_dssp             -----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCBCEEEE
T ss_pred             cEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-HHHHHHHHHHHH----cCCCEEEEEE
Confidence            46666667788889999999999999999999999999999999999987422 122223332221    2578899999


Q ss_pred             CCCcCCcCCH----HHHHhhhcccCccCCCcccccccc-cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          92 KIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        92 K~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+|+.+....    +++.+.+..              . .....+++++||++|.|+++++++|.+.+
T Consensus       134 K~Dl~~~~~~~~~~~~l~~~l~~--------------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          134 KSDNAGTEEIKRTEMIMKSILQS--------------THNLKNSSIIPISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             CTTSSCHHHHHHHHHHHHHHHHH--------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCcccchhHHHHHHHHHHHHhh--------------hcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence            9998752112    222232222              1 11256899999999999999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.63  E-value=4e-16  Score=119.51  Aligned_cols=121  Identities=10%  Similarity=0.078  Sum_probs=87.1

Q ss_pred             CceeEEEECCEEEEEEEcCCC----------hhhHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          16 PTSEELSMGDIVFTTHDLGGH----------VQARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~----------~~~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      .....+.+++..+++|||||+          +.|...+. .+++.||++++|+|++++.+++.. .|+..+..    .++
T Consensus       213 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~  287 (436)
T 2hjg_A          213 AVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGK  287 (436)
T ss_dssp             -CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTC
T ss_pred             eeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCC
Confidence            346678889999999999997          55555443 578899999999999998887664 46666543    368


Q ss_pred             cEEEEEeCCCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          85 PILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        85 piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      |+++|+||+|+.+...  .+++.+.+...            -......+++++||++|.|++++|+.+.+.
T Consensus       288 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~  346 (436)
T 2hjg_A          288 AVVIVVNKWDAVDKDESTMKEFEENIRDH------------FQFLDYAPILFMSALTKKRIHTLMPAIIKA  346 (436)
T ss_dssp             EEEEEEECGGGSCCCTTHHHHHHHHHHHH------------CGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             cEEEEEECccCCCcchHHHHHHHHHHHHh------------cccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence            9999999999876322  23333322210            011134579999999999999999988764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=2.8e-17  Score=114.55  Aligned_cols=129  Identities=20%  Similarity=0.286  Sum_probs=88.7

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCC----CCEEEEEEECC-CCCchHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCc
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPA----VDAIVFIIDAS-DRSRFPESKYELDSLLADD---ALTDVPILILGNKIDI   95 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~----ad~ii~v~D~~-~~~~~~~~~~~l~~~~~~~---~~~~~piilv~nK~Dl   95 (155)
                      .+..+.+|||||+..++..+..+++.    +|++++|+|++ ++.++.....|+.+++...   ...++|+++|+||+|+
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence            55789999999999999999999987    99999999999 8899999988988887532   2257899999999999


Q ss_pred             CCcCCHHHH--------Hhhhcc-----cCccCCC-----cc----c-----c-cccccCccEEEEEeeeccCCChHHHH
Q psy2161          96 FDAASEDEV--------RHFFGL-----YGLTTGK-----EF----T-----S-REILQMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        96 ~~~~~~~~i--------~~~~~~-----~~~~~~~-----~~----~-----~-~~~~~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      .+.....++        ......     ....+..     ..    .     . ........+.++.+|+..+ ++++++
T Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~~~~s~~~~-~i~~~~  211 (218)
T 1nrj_B          133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKR-KISQWR  211 (218)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGGGSSSCEEEEECBTTTT-BCHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCccccccCCceEEEeccccCC-cHHHHH
Confidence            765443221        111100     0000000     00    0     0 0002223577888888776 699999


Q ss_pred             HHHHhh
Q psy2161         148 RWLANY  153 (155)
Q Consensus       148 ~~l~~~  153 (155)
                      +|+.+.
T Consensus       212 ~~~~~~  217 (218)
T 1nrj_B          212 EWIDEK  217 (218)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.62  E-value=3.8e-15  Score=113.26  Aligned_cols=112  Identities=17%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC----CH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA----SE  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~----~~  101 (155)
                      .++++|||||+..|...+...+..+|++++|+|+++..........+..+..   ....|+++|+||+|+.+..    ..
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH---cCCCcEEEEEECccCCCHHHHHHHH
Confidence            7899999999999998888888999999999999864322222222222211   1236899999999986521    12


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +++.+.+..              .....++++++||++|.|+++++++|.+.+
T Consensus       160 ~~i~~~l~~--------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          160 RQIKEFIEG--------------TVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHh--------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            233333332              112356899999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.62  E-value=3.1e-15  Score=107.86  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             ccCCCCCc--eeEEEECCEEEEEEEcCCChhhHH------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPT--SEELSMGDIVFTTHDLGGHVQARR------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      ..|+.+..  ...+.+++..+.+|||||+..+..      .+..|+  .++|++++|+|+++.   +....+...+... 
T Consensus        32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~-  107 (271)
T 3k53_A           32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM-  107 (271)
T ss_dssp             ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT-
T ss_pred             CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc-
Confidence            44555543  566778889999999999877655      566777  789999999999864   3344455555432 


Q ss_pred             CCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          80 ALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                        ..+|+++|+||+|+.+    ......+.+.++                    ++++++||++|.|++++++++.+.
T Consensus       108 --~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------------------~~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A          108 --EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------------------VPVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             --TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------------------SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             --CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------------------CcEEEEEeCCCCCHHHHHHHHHHH
Confidence              2389999999999753    223333333333                    479999999999999999998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.61  E-value=2.3e-15  Score=113.07  Aligned_cols=124  Identities=7%  Similarity=-0.104  Sum_probs=91.0

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EE
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LI   88 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-il   88 (155)
                      .-+|++.....+++++.++++|||||++.|...+...++.+|++++|+| +. ..+.....++..+..    .++|. ++
T Consensus        44 ~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~iv  117 (370)
T 2elf_A           44 KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGII  117 (370)
T ss_dssp             EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEE
T ss_pred             CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEE
Confidence            3467777777788888999999999999998888888999999999999 43 445555555554432    24676 88


Q ss_pred             EEe-CCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEE--eeecc---CCChHHHHHHHHhhc
Q psy2161          89 LGN-KIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFM--CSVLK---RQGFGNGFRWLANYI  154 (155)
Q Consensus        89 v~n-K~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~~~~~~l~~~i  154 (155)
                      ++| |+|+ +....    +++.+.+..              .....+++++  +||++   |.|+++++++|.+.+
T Consensus       118 vvNNK~Dl-~~~~~~~~~~~i~~~l~~--------------~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          118 ALTRSDST-HMHAIDELKAKLKVITSG--------------TVLQDWECISLNTNKSAKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             EECCGGGS-CHHHHHHHHHHHHHHTTT--------------STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred             EEEeccCC-CHHHHHHHHHHHHHHHHh--------------cCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence            999 9998 52111    233333332              1123578999  99999   999999999988764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.61  E-value=1.3e-16  Score=122.27  Aligned_cols=118  Identities=15%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH-------HHHHHHhCCCCCCC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-------ELDSLLADDALTDV   84 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~-------~l~~~~~~~~~~~~   84 (155)
                      +|+......++.+++++++|||||+..|...+..+++.+|++++|+|+++ .+|+....       .+.....   ....
T Consensus        70 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~  145 (435)
T 1jny_A           70 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLD  145 (435)
T ss_dssp             -------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred             ceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCC
Confidence            56666667788888999999999999999999999999999999999988 55553322       2222111   1234


Q ss_pred             cEEEEEeCCCcCCc-CC-------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          85 PILILGNKIDIFDA-AS-------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        85 piilv~nK~Dl~~~-~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      |+++++||+|+.+. ..       .+++...+...+            +....+.++++||++|.|+.+
T Consensus       146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTB
T ss_pred             eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecccCccccc
Confidence            79999999999752 11       123333332211            111247899999999999874

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.60  E-value=1.6e-14  Score=110.54  Aligned_cols=116  Identities=17%  Similarity=0.112  Sum_probs=80.1

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+..++.++++|||||++.|...+..+++.+|++++|+|+++... .....++..... .  ..+|+++|+||
T Consensus        91 Ti~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~-~--~~~~iIvviNK  166 (434)
T 1zun_B           91 TIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASL-L--GIKHIVVAINK  166 (434)
T ss_dssp             CCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHH-T--TCCEEEEEEEC
T ss_pred             EEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH-c--CCCeEEEEEEc
Confidence            3333445566678999999999999999999999999999999999987643 333444443322 1  23479999999


Q ss_pred             CCcCCcCC------HHHHHhhhcccCccCCCccccccccc--CccEEEEEeeeccCCChHHH
Q psy2161          93 IDIFDAAS------EDEVRHFFGLYGLTTGKEFTSREILQ--MRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        93 ~Dl~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      +|+.+...      ..++...+..              ..  ...++++++||++|.|+.++
T Consensus       167 ~Dl~~~~~~~~~~i~~~~~~~~~~--------------~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          167 MDLNGFDERVFESIKADYLKFAEG--------------IAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHHT--------------TTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             CcCCcccHHHHHHHHHHHHHHHHH--------------hCCCccCceEEEEeccCCCCcccc
Confidence            99865211      1122222222              12  23478999999999998873

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.60  E-value=1.1e-15  Score=117.62  Aligned_cols=112  Identities=15%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhHHhH--------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQARRVW--------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      ....+.+++..+.+|||||.+.+...+        ..+++.+|++++|+|++++.+... ..++..+.      .+|+++
T Consensus       263 ~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piiv  335 (462)
T 3geh_A          263 VESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLIL  335 (462)
T ss_dssp             HHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEE
T ss_pred             EEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEE
Confidence            367788899999999999987654433        346889999999999998766644 44555542      369999


Q ss_pred             EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      |+||+|+.+.....    ....              + ....+++++||++|.|++++++++.+.+
T Consensus       336 V~NK~Dl~~~~~~~----~~~~--------------~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          336 VMNKIDLVEKQLIT----SLEY--------------P-ENITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             EEECTTSSCGGGST----TCCC--------------C-TTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECCCCCcchhhH----HHHH--------------h-ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999986522111    1111              0 1235789999999999999999998754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.59  E-value=7.3e-15  Score=112.62  Aligned_cols=120  Identities=19%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCc---hH---HHHHHHHHHHhCCCCCCCc-
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR---FP---ESKYELDSLLADDALTDVP-   85 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~---~~---~~~~~l~~~~~~~~~~~~p-   85 (155)
                      |+......++.++.++.+|||||++.|...+..+++.||++++|+|+++...   |+   .....+.... .   .++| 
T Consensus        82 Tid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~---~~v~~  157 (439)
T 3j2k_7           82 TVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-T---AGVKH  157 (439)
T ss_pred             eEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-H---cCCCe
Confidence            4444566677888999999999999999999999999999999999987432   11   2222222221 1   2456 


Q ss_pred             EEEEEeCCCcCCc-CC---HH----HHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHHHH
Q psy2161          86 ILILGNKIDIFDA-AS---ED----EVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        86 iilv~nK~Dl~~~-~~---~~----~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~  148 (155)
                      +++++||+|+.+. ..   .+    ++...+...+            +. ...++++++||++|.|+.++.+
T Consensus       158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG------------FNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhc------------ccccCCeeEEEeeccCCcccccccc
Confidence            9999999998531 11   12    2222222211            11 1257899999999999998543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.59  E-value=4.1e-15  Score=112.69  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=86.2

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGN   91 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~n   91 (155)
                      |++.....+..++.++.+|||||+..|...+..+++.+|++++|+|+++....+ ...++..+..    .++| +++++|
T Consensus        53 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviN  127 (397)
T 1d2e_A           53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVN  127 (397)
T ss_dssp             EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEE
T ss_pred             EEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEE
Confidence            444434445556799999999999999999999999999999999998754333 2333333322    2577 789999


Q ss_pred             CCCcCCcC-----CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC----------hHHHHHHHHhhcC
Q psy2161          92 KIDIFDAA-----SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG----------FGNGFRWLANYID  155 (155)
Q Consensus        92 K~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~----------i~~~~~~l~~~i~  155 (155)
                      |+|+.+..     ...++.+.+...+            +....++++++||++|.|          +.++++++.+.++
T Consensus       128 K~Dl~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          128 KADAVQDSEMVELVELEIRELLTEFG------------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             CGGGCSCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CcccCCCHHHHHHHHHHHHHHHHHcC------------CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            99986411     1123333333211            111246899999999775          8899999987653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.58  E-value=4.8e-15  Score=114.85  Aligned_cols=122  Identities=19%  Similarity=0.097  Sum_probs=79.1

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCch------HHHHHHHHHHHhCCCCCCCcE
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF------PESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~------~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      |+......+..+++++.+|||||++.|...+..+++.+|++++|+|+++...+      ......+. ++..  ...+|+
T Consensus        98 Ti~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~--~~~~~i  174 (483)
T 3p26_A           98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS--LGIHNL  174 (483)
T ss_dssp             SCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHH--TTCCCE
T ss_pred             ceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHH--cCCCcE
Confidence            44445667777889999999999999999999999999999999999875432      12222222 2221  123579


Q ss_pred             EEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          87 LILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        87 ilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      ++|+||+|+.+  ....+++...+...-        .........+.++++||++|.|+++
T Consensus       175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l--------~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          175 IIAMNKMDNVDWSQQRFEEIKSKLLPYL--------VDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHHHHHHH--------HHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             EEEEECcCcccchHHHHHHHHHHHHHHH--------HHcCCCcccceEEEEeeecCCCccc
Confidence            99999999865  122222222222100        0000112367899999999999875

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.58  E-value=6.7e-15  Score=111.74  Aligned_cols=125  Identities=20%  Similarity=0.293  Sum_probs=87.2

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGN   91 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~n   91 (155)
                      |+......+..++.++.+|||||+..|...+..+++.+|++++|+|+++... .....++..+..    .++| +++++|
T Consensus        62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviN  136 (405)
T 2c78_A           62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMN  136 (405)
T ss_dssp             CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEE
T ss_pred             CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEE
Confidence            3333344566667999999999999999999999999999999999987643 344555554432    2567 899999


Q ss_pred             CCCcCCcCC-----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC------------------hHHHHH
Q psy2161          92 KIDIFDAAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG------------------FGNGFR  148 (155)
Q Consensus        92 K~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------------------i~~~~~  148 (155)
                      |+|+.+...     ..++.+.+...+            +....++++++||++|.|                  +.++++
T Consensus       137 K~Dl~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~  204 (405)
T 2c78_A          137 KVDMVDDPELLDLVEMEVRDLLNQYE------------FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD  204 (405)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred             CccccCcHHHHHHHHHHHHHHHHHhc------------ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence            999864111     112333332211            111246799999999987                  888888


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       205 ~l~~~l  210 (405)
T 2c78_A          205 AIDEYI  210 (405)
T ss_dssp             HHHHHS
T ss_pred             HHHhhc
Confidence            887755

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.57  E-value=4.3e-16  Score=121.61  Aligned_cols=121  Identities=15%  Similarity=0.067  Sum_probs=85.3

Q ss_pred             ceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          17 TSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        17 ~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      ....+.+ ++.+++||||||++.|..++..+++.+|++++|+|+++....... ..+....    ..++|+++++||+|+
T Consensus        42 ~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~----~~~vPiIVViNKiDl  116 (537)
T 3izy_P           42 GAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK----DAHVPIVLAINKCDK  116 (537)
T ss_dssp             TSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH----TTTCCEEECCBSGGG
T ss_pred             eEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH----HcCCcEEEEEecccc
Confidence            3445555 457899999999999999999999999999999999886544333 3333332    136899999999998


Q ss_pred             CCcC---CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          96 FDAA---SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        96 ~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+..   ...++... ...           .......++++++||++|.|++++++++...+
T Consensus       117 ~~~~~~~v~~~l~~~-~~~-----------~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          117 AEADPEKVKKELLAY-DVV-----------CEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             TTTSCCSSSSHHHHT-TSC-----------CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhh-hhh-----------HHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            6521   11222221 110           00112357899999999999999999997653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.56  E-value=7.9e-16  Score=118.80  Aligned_cols=122  Identities=16%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchH---HHHHHHHHHHhCCCCCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFP---ESKYELDSLLADDALTD   83 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~---~~~~~l~~~~~~~~~~~   83 (155)
                      .-+|++.....+.+++.++++|||||++.|...+..+++.+|++|+|+|+++.   .+|+   .....+....    ..+
T Consensus       105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~  180 (467)
T 1r5b_A          105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQG  180 (467)
T ss_dssp             --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTT
T ss_pred             cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcC
Confidence            34677777778888899999999999999999999999999999999999875   2222   1122222221    125


Q ss_pred             Cc-EEEEEeCCCcCCc-CCHH-------HHHhhhccc-CccCCCccccccccc-CccEEEEEeeeccCCChHHHH
Q psy2161          84 VP-ILILGNKIDIFDA-ASED-------EVRHFFGLY-GLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        84 ~p-iilv~nK~Dl~~~-~~~~-------~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      +| +++++||+|+.+. .+.+       ++...+... +            +. ...+.++++||++|.|+.+++
T Consensus       181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g------------~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAG------------YNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcC------------CCccCCceEEeccccccccccccc
Confidence            66 9999999999641 1221       233333220 0            01 125789999999999988654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.56  E-value=9.1e-14  Score=104.16  Aligned_cols=128  Identities=16%  Similarity=0.139  Sum_probs=85.2

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCC--chHHHHHHHHHHHhC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDSLLAD   78 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~--~~~~~~~~l~~~~~~   78 (155)
                      ..+|.++....+.+++..+.+|||+|.         +.++..+. .++.||++++|+|++++.  .......|.. ++..
T Consensus       210 ~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~  287 (364)
T 2qtf_A          210 LFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFE-ILRE  287 (364)
T ss_dssp             ----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHH-HHHH
T ss_pred             cccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHH-HHHH
Confidence            457777888899999999999999996         33555544 578999999999998875  3333333322 2222


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCHHHHHhhh----cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDAASEDEVRHFF----GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....++|+++|+||+|+.+.. ..+.....    ..              +......++++||++|.|++++++++.+.+
T Consensus       288 l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~--------------l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          288 IGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE--------------LYSPIFDVIPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             HTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH--------------HCSCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH--------------hcCCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence            233578999999999986532 21111111    11              101234689999999999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.55  E-value=4.3e-14  Score=103.44  Aligned_cols=116  Identities=9%  Similarity=0.129  Sum_probs=79.6

Q ss_pred             eeEEEECCEEEEEEEcCCCh-hh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHV-QA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~-~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      ...+..++.++.+|||||.. ..        ......+++.+|++++|+|+++   +.....++.+.+..   .+.|+++
T Consensus        48 ~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~il  121 (301)
T 1ega_A           48 VGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVIL  121 (301)
T ss_dssp             EEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEE
T ss_pred             EEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEE
Confidence            44566778999999999987 32        2234567889999999999976   43334455554432   3689999


Q ss_pred             EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161          89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++||+|+..  ....+...+...             ....++ .++++||++|.|++++++++.+.+
T Consensus       122 vlNK~D~~~--~~~~~~~~l~~l-------------~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          122 AVNKVDNVQ--EKADLLPHLQFL-------------ASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             EEESTTTCC--CHHHHHHHHHHH-------------HTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             EEECcccCc--cHHHHHHHHHHH-------------HHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            999999864  122222222210             001122 689999999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.55  E-value=1.6e-15  Score=116.75  Aligned_cols=122  Identities=20%  Similarity=0.232  Sum_probs=78.1

Q ss_pred             cccCCCCCc----eeEEEECCEEEEEEEcCC--------ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           9 QHMPTLHPT----SEELSMGDIVFTTHDLGG--------HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         9 ~~~pT~~~~----~~~~~~~~~~~~~~Dt~G--------~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      ...++.|.+    ...+.+.+..+++|||||        ++.++..+..++++||++++|+|+++.  +.....++.+.+
T Consensus        50 ~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l  127 (456)
T 4dcu_A           50 IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKIL  127 (456)
T ss_dssp             -----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHH
T ss_pred             ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHH
Confidence            344555554    334445678999999999        778888999999999999999998653  333445666665


Q ss_pred             hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..   .++|+++|+||+|+.+..  ....+....                 ..-..+++||++|.|+.++++++.+.+
T Consensus       128 ~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-----------------g~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          128 YR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-----------------GFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             TT---CCSCEEEEEECC-----------CCSGGG-----------------SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             HH---cCCCEEEEEECccchhhh--hhHHHHHHc-----------------CCCceEEeecccccchHHHHHHHHhhc
Confidence            43   478999999999985321  111111111                 011357999999999999999998754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.52  E-value=1.6e-14  Score=114.20  Aligned_cols=119  Identities=14%  Similarity=0.096  Sum_probs=78.0

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS--  100 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~--  100 (155)
                      ..+++|||||+..|..++..+++.+|++|+|+|+++   +++++.+    ..+..    .++|+++++||+|+.....  
T Consensus        70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l----~~l~~----~~vPiIVViNKiDl~~~~~~~  141 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM----YRTPFVVAANKIDRIHGWRVH  141 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH----HHHHH----TTCCEEEEEECGGGSTTCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH----HHHHH----cCCeEEEEecccccccccccc
Confidence            369999999999999999999999999999999998   3344332    22221    3689999999999864211  


Q ss_pred             ------------HH-----------HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         101 ------------ED-----------EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       101 ------------~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                                  ..           ++...+...++...... ... -....++++++||++|.|++++++++...+
T Consensus       142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~-~l~-~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~  216 (594)
T 1g7s_A          142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD-RVT-DFASQVSIIPISAITGEGIPELLTMLMGLA  216 (594)
T ss_dssp             TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGG-GCS-CTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHH-HHH-hccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence                        01           11111111010000000 000 012457899999999999999999988643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.2e-14  Score=115.42  Aligned_cols=119  Identities=20%  Similarity=0.152  Sum_probs=80.2

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---Cch---HHHHHHHHHHHhCCCCCCCcE
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRF---PESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~---~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      |+......+..+++++++|||||++.|...+..+++.||++|+|+|+++.   ..+   ......+... ..  ....|+
T Consensus       232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~i  308 (611)
T 3izq_1          232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNL  308 (611)
T ss_dssp             CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEE
T ss_pred             eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeE
Confidence            55556777888889999999999999999999999999999999999862   111   1122222222 21  223569


Q ss_pred             EEEEeCCCcCCc--CCHHHHHh----hhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161          87 LILGNKIDIFDA--ASEDEVRH----FFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        87 ilv~nK~Dl~~~--~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      ++|+||+|+.+.  ....++..    .+...+            .....++++++||++|.|+.++
T Consensus       309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g------------~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCEEEECCTTTCTTTSSC
T ss_pred             EEEEecccccchhHHHHHHHHHHHHHHHHhhc------------ccccCccEEeeecccCCCcccc
Confidence            999999998651  11222222    222100            1123578999999999999865

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.51  E-value=2.9e-15  Score=116.11  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=81.1

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      ...+.+++.+++||||||+..|..++..+++.+|++++|+|+++.   ++.+.    +.....    .++|+++++||+|
T Consensus        43 ~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~~----~~vPiIVviNKiD  114 (501)
T 1zo1_I           43 AYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAKA----AQVPVVVAVNKID  114 (501)
T ss_dssp             CCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHHH----TTCCEEEEEECSS
T ss_pred             EEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHHh----cCceEEEEEEecc
Confidence            344556778999999999999999999999999999999999873   33332    222221    3689999999999


Q ss_pred             cCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        95 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      +.+.. ...+...+...+.       . .......++++++||++|.|++++++++..
T Consensus       115 l~~~~-~~~v~~~l~~~~~-------~-~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          115 KPEAD-PDRVKNELSQYGI-------L-PEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             SSTTC-CCCTTCCCCCCCC-------C-TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             ccccC-HHHHHHHHHHhhh-------h-HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            86521 1111111111000       0 000112478999999999999999999875

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.50  E-value=5.7e-13  Score=107.16  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161           9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI   88 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil   88 (155)
                      .+.+|++.....+.++++.+++|||||+..|...+..+++.+|++++|+|+++..+......|. .+..    .++|+++
T Consensus        60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~iv  134 (691)
T 1dar_A           60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIA  134 (691)
T ss_dssp             -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEE
T ss_pred             hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEE
Confidence            3457888888888999999999999999999999999999999999999999877766554443 3322    2689999


Q ss_pred             EEeCCCcCCc
Q psy2161          89 LGNKIDIFDA   98 (155)
Q Consensus        89 v~nK~Dl~~~   98 (155)
                      |+||+|+...
T Consensus       135 viNKiD~~~~  144 (691)
T 1dar_A          135 FANKMDKTGA  144 (691)
T ss_dssp             EEECTTSTTC
T ss_pred             EEECCCcccC
Confidence            9999998753

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.49  E-value=1.8e-13  Score=113.93  Aligned_cols=120  Identities=21%  Similarity=0.241  Sum_probs=84.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF   96 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~   96 (155)
                      ...++.++.++++|||||+..|...+..+++.+|++|+|+|+++.... ....++..+..    .++| +++++||+|+.
T Consensus       351 ~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv  425 (1289)
T 3avx_A          351 HVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMV  425 (1289)
T ss_dssp             CEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTC
T ss_pred             EEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccc
Confidence            344555679999999999999999999999999999999999875433 33344443321    2577 89999999996


Q ss_pred             CcCC-----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC--------CChHHHHHHHHhhc
Q psy2161          97 DAAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR--------QGFGNGFRWLANYI  154 (155)
Q Consensus        97 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~~i~~~~~~l~~~i  154 (155)
                      +...     ..++...+...+            +....++++++||++|        .|+.++++++.+.+
T Consensus       426 ~d~e~le~i~eEi~elLk~~G------------~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          426 DDEELLELVEMEVRELLSQYD------------FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTT------------SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             cchhhHHHHHHHHHHHHHhcc------------ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            4111     123333333211            1123468999999999        46899999988755

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.48  E-value=1.7e-14  Score=111.06  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=80.0

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---chH---HHHHHHHHHHhCCCCCCCc
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFP---ESKYELDSLLADDALTDVP   85 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~~---~~~~~l~~~~~~~~~~~~p   85 (155)
                      .|+......+..++.++++|||||++.|...+..+++.+|++|+|+|+++..   +|+   .....+.....    .+.|
T Consensus        71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~  146 (458)
T 1f60_A           71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVR  146 (458)
T ss_dssp             CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCC
T ss_pred             cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCC
Confidence            5666667788888899999999999999999999999999999999998641   221   22222222211    2454


Q ss_pred             -EEEEEeCCCcCC--cCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          86 -ILILGNKIDIFD--AASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        86 -iilv~nK~Dl~~--~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                       +++|+||+|+.+  ....    .++...+...+            +....++++++||++|.|+.+
T Consensus       147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTTB
T ss_pred             eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcC------------CCccCceEEEeecccCcCccc
Confidence             999999999863  1111    12222222210            111246899999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.47  E-value=5.8e-15  Score=100.78  Aligned_cols=86  Identities=24%  Similarity=0.409  Sum_probs=69.1

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCC----CCEEEEEEECC-CCCchHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCc
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPA----VDAIVFIIDAS-DRSRFPESKYELDSLLADD---ALTDVPILILGNKIDI   95 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~----ad~ii~v~D~~-~~~~~~~~~~~l~~~~~~~---~~~~~piilv~nK~Dl   95 (155)
                      .+..+.+|||||+..+...+..+++.    +|++++|+|++ ++.++.....|+..++...   ...+.|+++|+||+|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            56889999999999887777777776    89999999999 7888888888888776432   2247899999999999


Q ss_pred             CCcCCHHHHHhhhc
Q psy2161          96 FDAASEDEVRHFFG  109 (155)
Q Consensus        96 ~~~~~~~~i~~~~~  109 (155)
                      .+.....++...+.
T Consensus       169 ~~~~~~~~~~~~l~  182 (193)
T 2ged_A          169 FTARPPSKIKDALE  182 (193)
T ss_dssp             TTCCCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHH
Confidence            87666666655544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.47  E-value=2.2e-13  Score=104.47  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=79.1

Q ss_pred             CceeEEEECCEEEEEEEcCCChhhHHh------------HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQARRV------------WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      .....+.++|..+.+|||+|.++....            ...+++.+|++++|+|+++..+....  ++...+..   .+
T Consensus       218 ~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~  292 (439)
T 1mky_A          218 PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RG  292 (439)
T ss_dssp             -CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TT
T ss_pred             ceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cC
Confidence            345678889999999999998543322            13467789999999999876665442  23233222   36


Q ss_pred             CcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          84 VPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +|+++|+||+|+.+.  ....++...+...            .......+++++||++|.|++++++.+.+.
T Consensus       293 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~  352 (439)
T 1mky_A          293 RASVVVFNKWDLVVHREKRYDEFTKLFREK------------LYFIDYSPLIFTSADKGWNIDRMIDAMNLA  352 (439)
T ss_dssp             CEEEEEEECGGGSTTGGGCHHHHHHHHHHH------------CGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCCchhhHHHHHHHHHHHH------------hccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            899999999998652  2233333222110            011123578999999999999999998764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.46  E-value=5.8e-13  Score=104.14  Aligned_cols=81  Identities=22%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.++++.+++|||||+..|...+..+++.+|++|+|+|+++..... ...++... .   ..++|+++++||
T Consensus        69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~-~---~~~ipiivviNK  143 (529)
T 2h5e_A           69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT-R---LRDTPILTFMNK  143 (529)
T ss_dssp             -CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH-T---TTTCCEEEEEEC
T ss_pred             ceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH-H---HcCCCEEEEEcC
Confidence            333446778889999999999999999988889999999999999998754322 22333333 1   246899999999


Q ss_pred             CCcCCc
Q psy2161          93 IDIFDA   98 (155)
Q Consensus        93 ~Dl~~~   98 (155)
                      +|+.+.
T Consensus       144 ~Dl~~~  149 (529)
T 2h5e_A          144 LDRDIR  149 (529)
T ss_dssp             TTSCCS
T ss_pred             cCCccc
Confidence            999764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.45  E-value=2.3e-13  Score=98.93  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=74.8

Q ss_pred             CEEEEEEEcCCCh-------------hhHHhHHhhcCCCCEEE-EEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          25 DIVFTTHDLGGHV-------------QARRVWRDYFPAVDAIV-FIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        25 ~~~~~~~Dt~G~~-------------~~~~~~~~~~~~ad~ii-~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      +..+.+|||||..             .+..++..|++.++.++ +|+|+++.........++..+.    ..+.|+++|+
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~  199 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI  199 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEE
Confidence            4789999999952             46678889999998776 7999987544433334444442    2468999999


Q ss_pred             eCCCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          91 NKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        91 nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ||+|+.+...  ...+...+..              .......++++||++|.|++++++++.+
T Consensus       200 NK~Dl~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          200 TKLDLMDEGTDARDVLENKLLP--------------LRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             ECGGGSCTTCCCHHHHTTCSSC--------------CTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             EccccCCCCchHHHHHhCCcCc--------------CCCCcEEEECCChhhccccccHHHHHHH
Confidence            9999875322  2221111000              1112347889999999999999999865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.44  E-value=1e-14  Score=115.40  Aligned_cols=126  Identities=17%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---ch---HHHHHHHHHHHhCCCCCCCc-
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDSLLADDALTDVP-   85 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~---~~~~~~l~~~~~~~~~~~~p-   85 (155)
                      |+......+.+++.++.||||||+..|...+..+++.+|++|+|+|+++..   .+   ......+..+..    .++| 
T Consensus       242 Tid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~  317 (592)
T 3mca_A          242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISE  317 (592)
T ss_dssp             -----------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCC
T ss_pred             eEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCe
Confidence            444456667777899999999999999988889999999999999998532   11   111222222211    1454 


Q ss_pred             EEEEEeCCCcCC--cCC----HHHHHhhh-cccCccCCCcccccccccCccEEEEEeeeccCCChH--------------
Q psy2161          86 ILILGNKIDIFD--AAS----EDEVRHFF-GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG--------------  144 (155)
Q Consensus        86 iilv~nK~Dl~~--~~~----~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~--------------  144 (155)
                      +++|+||+|+.+  ...    ..++...+ ...+            +....++++++||++|.|+.              
T Consensus       318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~  385 (592)
T 3mca_A          318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP  385 (592)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSC
T ss_pred             EEEEEeccccccccHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchH
Confidence            999999999864  111    12333333 2111            12246789999999999998              


Q ss_pred             HHHHHHHhhc
Q psy2161         145 NGFRWLANYI  154 (155)
Q Consensus       145 ~~~~~l~~~i  154 (155)
                      .+++.|...+
T Consensus       386 ~Lle~l~~~~  395 (592)
T 3mca_A          386 TLLSALDQLV  395 (592)
T ss_dssp             CHHHHHHTSC
T ss_pred             HHHHHHHhhc
Confidence            7888876644

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.43  E-value=2.9e-12  Score=102.74  Aligned_cols=79  Identities=15%  Similarity=0.074  Sum_probs=62.1

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.++++.+++|||||+..|...+..+++.+|++++|+|+++..... ...++.....    .++|+++|+||
T Consensus        61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NK  135 (665)
T 2dy1_A           61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTK  135 (665)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEC
T ss_pred             eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecC
Confidence            444456667778899999999999999999999999999999999987654432 2344444432    26899999999


Q ss_pred             CCcC
Q psy2161          93 IDIF   96 (155)
Q Consensus        93 ~Dl~   96 (155)
                      +|+.
T Consensus       136 iD~~  139 (665)
T 2dy1_A          136 LDKG  139 (665)
T ss_dssp             GGGC
T ss_pred             Cchh
Confidence            9986

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.43  E-value=4.2e-13  Score=95.93  Aligned_cols=125  Identities=10%  Similarity=0.064  Sum_probs=77.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhh-----------HHhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQA-----------RRVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDA   80 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~   80 (155)
                      |.......+.+++.++.+|||||...+           ......+++++|++++|+|+++.... ..+..++....... 
T Consensus        58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-  136 (260)
T 2xtp_A           58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-  136 (260)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-
T ss_pred             eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-
Confidence            444456677888999999999997543           23344578999999999999863222 22234444443211 


Q ss_pred             CCCCcEEEEEe-CCCcCCcCCHHH---------HHhhhcccCccCCCcccccccccCccEEE--EEeeeccCCChHHHHH
Q psy2161          81 LTDVPILILGN-KIDIFDAASEDE---------VRHFFGLYGLTTGKEFTSREILQMRPIEL--FMCSVLKRQGFGNGFR  148 (155)
Q Consensus        81 ~~~~piilv~n-K~Dl~~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~~i~~~~~  148 (155)
                       ...|.++|+| |+|+.+. ....         +...+..              +......+  +++||++|.|++++|+
T Consensus       137 -~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~SA~~~~gv~~l~~  200 (260)
T 2xtp_A          137 -AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA--------------CGGRICAFNNRAEGSNQDDQVKELMD  200 (260)
T ss_dssp             -GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH--------------TTTCEEECCTTCCHHHHHHHHHHHHH
T ss_pred             -hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH--------------hCCeEEEecCcccccccHHHHHHHHH
Confidence             1346666666 9998743 2222         1111111              11111112  7899999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      ++.+.+
T Consensus       201 ~i~~~~  206 (260)
T 2xtp_A          201 CIEDLL  206 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.43  E-value=3.6e-12  Score=102.68  Aligned_cols=81  Identities=16%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             CCCCCceeEEEECC-------EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161          12 PTLHPTSEELSMGD-------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV   84 (155)
Q Consensus        12 pT~~~~~~~~~~~~-------~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (155)
                      +|+......+.+++       +.+++|||||+..|...+..+++.+|++|+|+|+++.........| .....    .++
T Consensus        61 iTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~i  135 (704)
T 2rdo_7           61 ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKV  135 (704)
T ss_pred             ceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCC
Confidence            45555556777776       9999999999999999999999999999999999876554433333 33321    368


Q ss_pred             cEEEEEeCCCcCC
Q psy2161          85 PILILGNKIDIFD   97 (155)
Q Consensus        85 piilv~nK~Dl~~   97 (155)
                      |+++|+||+|+..
T Consensus       136 p~ilviNKiD~~~  148 (704)
T 2rdo_7          136 PRIAFVNKMDRMG  148 (704)
T ss_pred             CEEEEEeCCCccc
Confidence            9999999999865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.43  E-value=2e-13  Score=98.54  Aligned_cols=127  Identities=16%  Similarity=0.185  Sum_probs=66.5

Q ss_pred             cCCCCCceeEEEE--CC--EEEEEEEcCCC-------hhhHHhH-------HhhcC-------------CCCEEEEEEEC
Q psy2161          11 MPTLHPTSEELSM--GD--IVFTTHDLGGH-------VQARRVW-------RDYFP-------------AVDAIVFIIDA   59 (155)
Q Consensus        11 ~pT~~~~~~~~~~--~~--~~~~~~Dt~G~-------~~~~~~~-------~~~~~-------------~ad~ii~v~D~   59 (155)
                      .||++........  ++  +++++|||||.       ..+...+       ..|++             .+|+++++++.
T Consensus        46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~  125 (274)
T 3t5d_A           46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  125 (274)
T ss_dssp             ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred             CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence            6888887555544  44  69999999997       2233333       34443             37899999987


Q ss_pred             CCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc
Q psy2161          60 SDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK  139 (155)
Q Consensus        60 ~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  139 (155)
                      +.......-..++..+. .    .+|+++|+||+|+............+..             .+...++.++.+||++
T Consensus       126 ~~~~~~~~d~~~l~~l~-~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~-------------~l~~~~i~v~~~sa~~  187 (274)
T 3t5d_A          126 SGHGLKPLDIEFMKRLH-E----KVNIIPLIAKADTLTPEECQQFKKQIMK-------------EIQEHKIKIYEFPETD  187 (274)
T ss_dssp             CCSSCCHHHHHHHHHHT-T----TSCEEEEESSGGGSCHHHHHHHHHHHHH-------------HHHHTTCCCCCC----
T ss_pred             CCCCCCHHHHHHHHHHh-c----cCCEEEEEeccCCCCHHHHHHHHHHHHH-------------HHHHcCCeEEcCCCCC
Confidence            65322222234445542 2    6899999999998542111111111111             1122456788899999


Q ss_pred             CCChHHHHHHHHhhcC
Q psy2161         140 RQGFGNGFRWLANYID  155 (155)
Q Consensus       140 ~~~i~~~~~~l~~~i~  155 (155)
                      +.|+++++++|.+.+|
T Consensus       188 ~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          188 DEEENKLVKKIKDRLP  203 (274)
T ss_dssp             -------CHHHHHTCS
T ss_pred             ChhHHHHHHHHhcCCC
Confidence            9999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.43  E-value=1.3e-13  Score=100.95  Aligned_cols=97  Identities=13%  Similarity=0.113  Sum_probs=73.4

Q ss_pred             ChhhHHhHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--C-HHHHHhhhccc
Q psy2161          36 HVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--S-EDEVRHFFGLY  111 (155)
Q Consensus        36 ~~~~~~~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~-~~~i~~~~~~~  111 (155)
                      ++++..+.+.+++++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+..  . ..+..+.+.. 
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-  140 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-  140 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence            5666777778999999999999999885 88878888876643    478999999999986421  1 1222222222 


Q ss_pred             CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                                      .++.++++||++|.|++++++.+...
T Consensus       141 ----------------~g~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          141 ----------------AGYDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             ----------------TTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             ----------------CCCeEEEEECCCCCCHHHHHhhccCc
Confidence                            24589999999999999999987643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.41  E-value=3.1e-12  Score=102.96  Aligned_cols=83  Identities=17%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ..+|+......+.++++++++|||||+..+...+..+++.+|++++|+|+++..+......| ..+..    .++|+++|
T Consensus        59 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilv  133 (693)
T 2xex_A           59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVF  133 (693)
T ss_dssp             -----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEE
T ss_pred             cCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEE
Confidence            34577777788889999999999999999988899999999999999999987666554444 33332    26899999


Q ss_pred             EeCCCcCC
Q psy2161          90 GNKIDIFD   97 (155)
Q Consensus        90 ~nK~Dl~~   97 (155)
                      +||+|+..
T Consensus       134 iNK~Dl~~  141 (693)
T 2xex_A          134 VNKMDKLG  141 (693)
T ss_dssp             EECTTSTT
T ss_pred             EECCCccc
Confidence            99999876

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.34  E-value=3e-12  Score=90.43  Aligned_cols=83  Identities=11%  Similarity=0.053  Sum_probs=57.2

Q ss_pred             CCCCceeEEEECCEEEEEEEcCC-----------ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-   80 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G-----------~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-   80 (155)
                      |.......+.+++..+.+|||||           .+.+...+..+++++|++++|+|+++....  ...++..++.... 
T Consensus        65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~  142 (239)
T 3lxx_A           65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE  142 (239)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH
T ss_pred             eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh
Confidence            34444667788899999999999           345667777788899999999999764442  2233333321110 


Q ss_pred             CCCCcEEEEEeCCCcCC
Q psy2161          81 LTDVPILILGNKIDIFD   97 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~   97 (155)
                      ....|+++|+||+|+.+
T Consensus       143 ~~~~~~iiv~nK~D~~~  159 (239)
T 3lxx_A          143 RARSFMILIFTRKDDLG  159 (239)
T ss_dssp             HHGGGEEEEEECGGGC-
T ss_pred             hccceEEEEEeCCccCC
Confidence            02369999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.33  E-value=2.6e-11  Score=83.61  Aligned_cols=124  Identities=19%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             CcccCCCCCc--eeEEEECCEEEEEEEcCCCh----------hhHHhHHhhc---CCCCEEEEEEECCCCCchHH--HHH
Q psy2161           8 AQHMPTLHPT--SEELSMGDIVFTTHDLGGHV----------QARRVWRDYF---PAVDAIVFIIDASDRSRFPE--SKY   70 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~~---~~ad~ii~v~D~~~~~~~~~--~~~   70 (155)
                      ..+.||.|..  ...+.+++ .+.+|||||..          .++.....++   +.++++++++|++.+.+...  +..
T Consensus        53 ~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~  131 (210)
T 1pui_A           53 ARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE  131 (210)
T ss_dssp             ----------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred             ccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH
Confidence            4456777765  33444544 68899999973          2343344444   57899999999988655532  223


Q ss_pred             HHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161          71 ELDSLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG  146 (155)
Q Consensus        71 ~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  146 (155)
                      |+..       .+.|+++++||+|+...-.    ...+...+..               ....+.++++||+++.|++++
T Consensus       132 ~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Sal~~~~~~~l  189 (210)
T 1pui_A          132 WAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---------------FNGDVQVETFSSLKKQGVDKL  189 (210)
T ss_dssp             HHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---------------GCSCEEEEECBTTTTBSHHHH
T ss_pred             HHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---------------cCCCCceEEEeecCCCCHHHH
Confidence            3221       3689999999999754211    1222222221               112467899999999999999


Q ss_pred             HHHHHhhc
Q psy2161         147 FRWLANYI  154 (155)
Q Consensus       147 ~~~l~~~i  154 (155)
                      ++++.+.+
T Consensus       190 ~~~l~~~~  197 (210)
T 1pui_A          190 RQKLDTWF  197 (210)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.31  E-value=5.7e-11  Score=93.31  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.|++++++++||||+..|..-....++-+|++|+|+|+...-.-.....| .....    .++|.++++||
T Consensus        87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK  161 (548)
T 3vqt_A           87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNK  161 (548)
T ss_dssp             -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEEC
T ss_pred             cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEec
Confidence            55556788999999999999999999999999999999999999999875443333333 33332    36899999999


Q ss_pred             CCcCCcC---CHHHHHhhhc
Q psy2161          93 IDIFDAA---SEDEVRHFFG  109 (155)
Q Consensus        93 ~Dl~~~~---~~~~i~~~~~  109 (155)
                      +|.....   ..+++.+.+.
T Consensus       162 ~Dr~~ad~~~~~~~i~~~l~  181 (548)
T 3vqt_A          162 MDREALHPLDVMADIEQHLQ  181 (548)
T ss_dssp             TTSCCCCHHHHHHHHHHHHT
T ss_pred             ccchhcchhHhhhhhhhhcC
Confidence            9986532   3345555443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.27  E-value=1.6e-11  Score=93.42  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             CCCCCceeEEEECC-EEEEEEEcCCChh----hH---HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-CCC
Q psy2161          12 PTLHPTSEELSMGD-IVFTTHDLGGHVQ----AR---RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-ALT   82 (155)
Q Consensus        12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~----~~---~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-~~~   82 (155)
                      +|...+...+.+++ ..+.+||+||...    +.   ......++.++.+++++|++ ...+..+..+..++.... .+.
T Consensus       190 tTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~  268 (416)
T 1udx_A          190 TTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALL  268 (416)
T ss_dssp             CSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHH
T ss_pred             ceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhh
Confidence            34555666677776 8999999999632    11   11222356799999999998 566666666665554321 123


Q ss_pred             CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..|.++|+||+|+........+...+.                 ..++.++.+||+++.|++++++++.+.+
T Consensus       269 ~~P~ILVlNKlDl~~~~~~~~l~~~l~-----------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l  323 (416)
T 1udx_A          269 RRPSLVALNKVDLLEEEAVKALADALA-----------------REGLAVLPVSALTGAGLPALKEALHALV  323 (416)
T ss_dssp             HSCEEEEEECCTTSCHHHHHHHHHHHH-----------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCChhhHHHHHHHHHHHH-----------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence            579999999999865311122222222                 2345799999999999999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.27  E-value=5.7e-13  Score=99.75  Aligned_cols=117  Identities=10%  Similarity=0.124  Sum_probs=55.0

Q ss_pred             CCCCCceeEE--EECC--EEEEEEEcCCC-------hhhHHhHH-------hhcCCC-------------CEEEEEEECC
Q psy2161          12 PTLHPTSEEL--SMGD--IVFTTHDLGGH-------VQARRVWR-------DYFPAV-------------DAIVFIIDAS   60 (155)
Q Consensus        12 pT~~~~~~~~--~~~~--~~~~~~Dt~G~-------~~~~~~~~-------~~~~~a-------------d~ii~v~D~~   60 (155)
                      ||++.....+  ..++  ..+++|||||.       +.+..++.       .|++++             ++++|+++.+
T Consensus        77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~  156 (361)
T 2qag_A           77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF  156 (361)
T ss_dssp             -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred             CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence            5666543333  3344  58999999998       55555554       555543             3455665542


Q ss_pred             CCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEe
Q psy2161          61 DRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMC  135 (155)
Q Consensus        61 ~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (155)
                       ..++.... .++..+ .    .++|+++|+||+|+......    .++...+                 ...++.++++
T Consensus       157 -~~~l~~~d~~~~~~l-~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-----------------~~~~i~~~~~  213 (361)
T 2qag_A          157 -GHGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTLKERERLKKRILDEI-----------------EEHNIKIYHL  213 (361)
T ss_dssp             -SSSCCHHHHHHHHHT-C----S-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-----------------TCC-CCSCCC
T ss_pred             -CCCcchhHHHHHHHh-c----cCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----------------HHCCCCEEeC
Confidence             34555554 344433 1    46899999999998642111    1222222                 2245688999


Q ss_pred             eeccCCChHHHHHHHHh
Q psy2161         136 SVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       136 Sa~~~~~i~~~~~~l~~  152 (155)
                      ||++|.| ++.|.++.+
T Consensus       214 Sa~~~~~-~e~~~~l~~  229 (361)
T 2qag_A          214 PDAESDE-DEDFKEQTR  229 (361)
T ss_dssp             C----------CHHHHH
T ss_pred             CCcCCCc-chhHHHHHH
Confidence            9999998 666666554

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.23  E-value=2.1e-11  Score=89.27  Aligned_cols=113  Identities=14%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             CCEEEEEEEcCCChh-------------hHHhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          24 GDIVFTTHDLGGHVQ-------------ARRVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ++.++.+|||||...             +...+..+++.+|++++|+|+++.... .....++..+ .   ..+.|+++|
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v  204 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGV  204 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEE
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEE
Confidence            447899999999643             567788899999999999997433211 1112233333 2   236899999


Q ss_pred             EeCCCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc---CCChHHHHHHHHhhc
Q psy2161          90 GNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK---RQGFGNGFRWLANYI  154 (155)
Q Consensus        90 ~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~~i  154 (155)
                      +||+|+.+...  ...+...+..              ......+++.+|+.+   +.|+.++++.+.+.+
T Consensus       205 ~NK~Dl~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~  260 (315)
T 1jwy_B          205 ITKLDLMDKGTDAMEVLTGRVIP--------------LTLGFIGVINRSQEDIIAKKSIRESLKSEILYF  260 (315)
T ss_dssp             EECTTSSCSSCCCHHHHTTSSSC--------------CTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred             EcCcccCCcchHHHHHHhCCCcc--------------CCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence            99999865322  2222211100              111223455667777   889999998876543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.22  E-value=3.5e-11  Score=96.93  Aligned_cols=117  Identities=19%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             EEEEEEEcCCChh---hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--C
Q psy2161          26 IVFTTHDLGGHVQ---ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--S  100 (155)
Q Consensus        26 ~~~~~~Dt~G~~~---~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~  100 (155)
                      ..+.+|||||...   ....+..++++||++++|+|++++.+......|...+ ..   .+.|+++|+||+|+....  +
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~~~~~  249 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRESLID  249 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGGGCSS
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccccccC
Confidence            3699999999765   3456778899999999999998877776654443333 21   267899999999986421  1


Q ss_pred             HH----------HHHhh----hcccCccCCCcccccccccCccEEEEEeeec--------------cCCChHHHHHHHHh
Q psy2161         101 ED----------EVRHF----FGLYGLTTGKEFTSREILQMRPIELFMCSVL--------------KRQGFGNGFRWLAN  152 (155)
Q Consensus       101 ~~----------~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--------------~~~~i~~~~~~l~~  152 (155)
                      .+          .+...    +....        ....+......+++|||+              +|.|++++++++.+
T Consensus       250 ~ee~e~l~~~~~~i~~~~~~~l~~~~--------~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~  321 (695)
T 2j69_A          250 PDDVEELQASENRLRQVFNANLAEYC--------TVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNT  321 (695)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHGGGG--------BSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhh--------cccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHH
Confidence            11          12111    11100        000000122358999999              99999999999876


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       322 ~l  323 (695)
T 2j69_A          322 FL  323 (695)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.22  E-value=6.3e-12  Score=89.70  Aligned_cols=127  Identities=16%  Similarity=0.158  Sum_probs=70.0

Q ss_pred             EEEEEEEcCCChhhHHhH------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC
Q psy2161          26 IVFTTHDLGGHVQARRVW------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA   99 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~   99 (155)
                      +.+.+|||||+.......      ...+.. +++++++|++......................++|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            689999999997654321      134566 8999999986543333222111111100011257999999999986532


Q ss_pred             CHHHHHhhhcccC-cc------C--CCcc--cc---cccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         100 SEDEVRHFFGLYG-LT------T--GKEF--TS---REILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       100 ~~~~i~~~~~~~~-~~------~--~~~~--~~---~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...++.+.+.... +.      +  .+..  .+   .... .....++++||++|.|++++++++.+.+
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence            2222222211000 00      0  0000  00   0000 1224689999999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.17  E-value=2.8e-11  Score=90.38  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=70.0

Q ss_pred             ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH-
Q psy2161          23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE-  101 (155)
Q Consensus        23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~-  101 (155)
                      ..++.+.+|||||....   ....+..+|++++|+|.+....+..++         ......|+++|+||+|+.+.... 
T Consensus       169 ~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~  236 (355)
T 3p32_A          169 AAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEAR  236 (355)
T ss_dssp             HTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHH
T ss_pred             hCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHH
Confidence            36789999999995432   223358899999999987654442211         11234699999999998642222 


Q ss_pred             ---HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         102 ---DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       102 ---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                         .++...+.....          .......+++.+||++|.|++++++++.+.+
T Consensus       237 ~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~  282 (355)
T 3p32_A          237 LAARELSAAIRLIYP----------REALWRPPVLTMSAVEGRGLAELWDTVERHR  282 (355)
T ss_dssp             HHHHHHHHHHHHHST----------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccc----------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence               122222211000          0001134689999999999999999998754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.13  E-value=4e-11  Score=89.95  Aligned_cols=102  Identities=22%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             CCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccC
Q psy2161          34 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYG  112 (155)
Q Consensus        34 ~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~  112 (155)
                      ..+++|++.+.++++.++++++|+|++++.     ..|...+.+.  ..++|+++|+||+|+.+ ....+.+.+.+... 
T Consensus        54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~-  125 (368)
T 3h2y_A           54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS-  125 (368)
T ss_dssp             --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHH-
Confidence            356889999999999999999999998742     2333333221  13789999999999965 33344444432210 


Q ss_pred             ccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         113 LTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                               ..........++.+||++|.|++++++++.+
T Consensus       126 ---------~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A          126 ---------AKQLGLKPEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             ---------HHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ---------HHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence                     0001111237899999999999999999865

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.11  E-value=1.3e-10  Score=83.24  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhc---------CCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCC-
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF---------PAVDAIVFIIDASDRSRFPES-KYELDSLLADDAL-   81 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~-   81 (155)
                      |.......+.+++..+++|||||+..+......++         .++|++++|+|++... +... ..|+..+...... 
T Consensus        71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~  149 (262)
T 3def_A           71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE  149 (262)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG
T ss_pred             ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh
Confidence            44445677788999999999999865533222222         2789999999987654 4333 3555555432111 


Q ss_pred             CCCcEEEEEeCCCcC
Q psy2161          82 TDVPILILGNKIDIF   96 (155)
Q Consensus        82 ~~~piilv~nK~Dl~   96 (155)
                      ...|+++|+||+|+.
T Consensus       150 ~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          150 IWCKTLLVLTHAQFS  164 (262)
T ss_dssp             GGGGEEEEEECTTCC
T ss_pred             hhcCEEEEEeCcccC
Confidence            124999999999985

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.09  E-value=1.5e-10  Score=86.36  Aligned_cols=111  Identities=16%  Similarity=0.099  Sum_probs=68.3

Q ss_pred             CEEEEEEEcCCCh-------------hhHHhHHhhcCCCCEEE-EEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          25 DIVFTTHDLGGHV-------------QARRVWRDYFPAVDAIV-FIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        25 ~~~~~~~Dt~G~~-------------~~~~~~~~~~~~ad~ii-~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      +..+.+|||||..             .+..+...|++.++.++ +|+|++....-.....++..+.    ..+.|+++|+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~  204 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVI  204 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEe
Confidence            4789999999952             45677888887766554 4566654222122223444432    2468999999


Q ss_pred             eCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          91 NKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        91 nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ||+|+.+... ...+.+. ...            ........++.+||++|.|++++++++.+
T Consensus       205 NK~Dl~~~~~~~~~~~~~-~~~------------~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVLEN-KLL------------PLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             ECGGGSCTTCCCHHHHTT-CSS------------CCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccccccCcchhHHHHHhC-Ccc------------cccCCceEEEeCCcccccccccHHHHHHH
Confidence            9999865322 1122110 000            01112246789999999999999998865

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.09  E-value=2.4e-10  Score=93.80  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             CCCCCceeEEEEC----------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161          12 PTLHPTSEELSMG----------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus        12 pT~~~~~~~~~~~----------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      .|++.....+.++                ++.+++|||||+..|...+..+++.+|++|+|+|+++..++.....|....
T Consensus        68 iTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~  147 (842)
T 1n0u_A           68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL  147 (842)
T ss_dssp             CCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred             eeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4666655555554                589999999999999999999999999999999999887776655444322


Q ss_pred             HhCCCCCCCcEEEEEeCCCcC
Q psy2161          76 LADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~   96 (155)
                       .    .++|+++|+||+|+.
T Consensus       148 -~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          148 -G----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             -H----TTCEEEEEEECHHHH
T ss_pred             -H----cCCCeEEEEECCCcc
Confidence             2    368999999999986

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.07  E-value=2.4e-10  Score=82.83  Aligned_cols=100  Identities=21%  Similarity=0.242  Sum_probs=66.0

Q ss_pred             EEEcCCCh-hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhh
Q psy2161          30 THDLGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFF  108 (155)
Q Consensus        30 ~~Dt~G~~-~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~  108 (155)
                      +-..||+. +........++.+|++++|+|+.+|.+...  ..+...+     .++|.++|+||+|+.+....+...+++
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            34568886 455566677899999999999998866642  1233332     478999999999996521122233333


Q ss_pred             cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         109 GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..                 .++.++.+||++|.|+.++++.+.+.
T Consensus        76 ~~-----------------~g~~~i~iSA~~~~gi~~L~~~i~~~  103 (282)
T 1puj_A           76 EN-----------------QGIRSLSINSVNGQGLNQIVPASKEI  103 (282)
T ss_dssp             HT-----------------TTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             Hh-----------------cCCcEEEEECCCcccHHHHHHHHHHH
Confidence            22                 23478899999999999998887654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.07  E-value=9.9e-11  Score=87.87  Aligned_cols=102  Identities=19%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             CCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccC
Q psy2161          34 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYG  112 (155)
Q Consensus        34 ~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~  112 (155)
                      ..+++|++.+.+++++++++++|+|++++.+.  ....+...+     .++|+++|+||+|+.+. ...+.+.+.+... 
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-  127 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-  127 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-
Confidence            35788999999999999999999999986531  111122221     37899999999999653 3344444433210 


Q ss_pred             ccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         113 LTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                               ..........++.+||++|.|++++++.+.+
T Consensus       128 ---------~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A          128 ---------AEELGLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             ---------HHTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ---------HHHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence                     0001111237899999999999999999865

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.06  E-value=1.5e-10  Score=92.41  Aligned_cols=138  Identities=15%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK   92 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK   92 (155)
                      |+......+.+++++++++||||+..|.......++-+|++|+|+|+...-.-.. ...+.....    .++|.++++||
T Consensus        54 TI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INK  128 (638)
T 3j25_A           54 TIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINK  128 (638)
T ss_dssp             CSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEE
T ss_pred             cEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEec
Confidence            4444567788899999999999999999999999999999999999976422222 222333322    25899999999


Q ss_pred             CCcCCcC---CHHHHHhhhcccCccCCCc---------cc---------------ccc--------------------cc
Q psy2161          93 IDIFDAA---SEDEVRHFFGLYGLTTGKE---------FT---------------SRE--------------------IL  125 (155)
Q Consensus        93 ~Dl~~~~---~~~~i~~~~~~~~~~~~~~---------~~---------------~~~--------------------~~  125 (155)
                      +|.....   ..+++.+.+........+.         ..               ++.                    ..
T Consensus       129 mDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~  208 (638)
T 3j25_A          129 IDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQ  208 (638)
T ss_dssp             CCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhc
Confidence            9986532   2344444443211100000         00               000                    00


Q ss_pred             cCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         126 QMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ...-.+++..||+++.|++.+++.+.+.++
T Consensus       209 ~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          209 NCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             HTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             ccccccccccccccCCCchhHhhhhhcccc
Confidence            112246788899999999999999988764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.05  E-value=1.9e-11  Score=92.52  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             EEEEEEEcCCChh----hHHhHH---hhcCCCCEEEEEEECCCC
Q psy2161          26 IVFTTHDLGGHVQ----ARRVWR---DYFPAVDAIVFIIDASDR   62 (155)
Q Consensus        26 ~~~~~~Dt~G~~~----~~~~~~---~~~~~ad~ii~v~D~~~~   62 (155)
                      .++++|||||...    .+.+..   .+++++|++++|+|+++.
T Consensus        71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            6899999999754    233333   447899999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.02  E-value=2e-10  Score=85.84  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=68.6

Q ss_pred             CEEEEEEEcCCChhh-------------HHhHHhhcCCCCEEEEEEECCCCCchH-HHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          25 DIVFTTHDLGGHVQA-------------RRVWRDYFPAVDAIVFIIDASDRSRFP-ESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~D~~~~~~~~-~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      ...+++|||||...+             ......|++++|++++|+|.++..... ....++..+    ...+.|+++|+
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~  210 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPSGDRTFGVL  210 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS----CTTCTTEEEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh----cccCCCEEEEE
Confidence            478999999997664             677889999999999999876544332 222222222    23468999999


Q ss_pred             eCCCcCCcC-CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161          91 NKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW  149 (155)
Q Consensus        91 nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  149 (155)
                      ||+|+.+.. ...+.....                ....++.|+.+|+.++.++++.+.+
T Consensus       211 nK~Dl~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          211 TKIDLMDKGTDAVEILEGR----------------SFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             ECGGGCCTTCCSHHHHTTS----------------SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             eCCccCCCcccHHHHHcCc----------------cccccCCeEEEEECChHHhccCCCH
Confidence            999986521 111211111                1123456888999988877665443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.01  E-value=3.7e-10  Score=83.90  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH
Q psy2161          23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASED  102 (155)
Q Consensus        23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~  102 (155)
                      .+++.+.+|||||.......   ..+.+|++++|+|++....+...+.   ..      .+.|.++|+||+|+.+.....
T Consensus       146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~  213 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVA  213 (341)
T ss_dssp             HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHH
T ss_pred             ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHH
Confidence            45789999999997654432   3589999999999875432211111   01      146899999999986421111


Q ss_pred             ----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         103 ----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       103 ----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                          ++...+.....          ........++++||++|.|++++++++.+.
T Consensus       214 ~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          214 IARHMYESALHILRR----------KYDEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             HHHHHHHHHHHHSCC----------SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc----------cccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence                22222211000          000012468999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.98  E-value=3.7e-10  Score=78.45  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=68.6

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc--CCH
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA--ASE  101 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~--~~~  101 (155)
                      .+..+.+|||+|+.....   .+...++.+++|+|+++....  ...+. ..      .+.|+++|+||+|+.+.  ...
T Consensus       107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~  174 (221)
T 2wsm_A          107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADV  174 (221)
T ss_dssp             TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred             CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHH
Confidence            357899999999521111   122367899999999765321  11111 11      14789999999998642  345


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .++...+..              . .....++++||++|.|++++++++.+.+
T Consensus       175 ~~~~~~~~~--------------~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~  212 (221)
T 2wsm_A          175 EKMKADAKL--------------I-NPRAKIIEMDLKTGKGFEEWIDFLRGIL  212 (221)
T ss_dssp             HHHHHHHHH--------------H-CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--------------h-CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence            555554432              1 1245799999999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.92  E-value=5.5e-09  Score=75.04  Aligned_cols=79  Identities=8%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             eeEEEECCEEEEEEEcCCChhhH-------HhHHhh--cCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCC-CCCcE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQAR-------RVWRDY--FPAVDAIVFIIDASDRSRFPES-KYELDSLLADDAL-TDVPI   86 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~--~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~-~~~pi   86 (155)
                      ...+..++.++.+|||||...+.       ..+..+  .+++|++++|+|++.. ++... ..|+..+...... ..+|+
T Consensus        79 ~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~i  157 (270)
T 1h65_A           79 MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKA  157 (270)
T ss_dssp             EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred             EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCE
Confidence            45566788999999999985432       222223  3479999999998653 34332 3566555432111 12699


Q ss_pred             EEEEeCCCcCC
Q psy2161          87 LILGNKIDIFD   97 (155)
Q Consensus        87 ilv~nK~Dl~~   97 (155)
                      ++|+||+|+..
T Consensus       158 ivV~nK~Dl~~  168 (270)
T 1h65_A          158 IVALTHAQFSP  168 (270)
T ss_dssp             EEEEECCSCCC
T ss_pred             EEEEECcccCC
Confidence            99999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.90  E-value=3.6e-08  Score=79.65  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             CCCCceeEEEEC-------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161          13 TLHPTSEELSMG-------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP   85 (155)
Q Consensus        13 T~~~~~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p   85 (155)
                      |+.-...++.+.       ++.++++||||+..|..-....++-+|++|+|+|+...-.-.. ...+....+    .++|
T Consensus        65 TI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp  139 (709)
T 4fn5_A           65 TITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVP  139 (709)
T ss_dssp             ---CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCC
T ss_pred             eEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCC
Confidence            333345566653       5899999999999999999999999999999999976433322 233333332    2689


Q ss_pred             EEEEEeCCCcCCc---CCHHHHHhhhc
Q psy2161          86 ILILGNKIDIFDA---ASEDEVRHFFG  109 (155)
Q Consensus        86 iilv~nK~Dl~~~---~~~~~i~~~~~  109 (155)
                      .++++||+|....   ...+++...+.
T Consensus       140 ~i~~iNKiDr~~a~~~~~~~ei~~~l~  166 (709)
T 4fn5_A          140 RIVYVNKMDRQGANFLRVVEQIKKRLG  166 (709)
T ss_dssp             EEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred             eEEEEccccccCccHHHHHHHhhhhcc
Confidence            9999999998652   23345554443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.87  E-value=4e-09  Score=78.59  Aligned_cols=110  Identities=13%  Similarity=0.050  Sum_probs=63.6

Q ss_pred             ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--
Q psy2161          23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS--  100 (155)
Q Consensus        23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~--  100 (155)
                      .+++.+.++||+|-...   .......+|++++|+|++........+.   .+      -..|.++|+||+|+.+...  
T Consensus       164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~  231 (349)
T 2www_A          164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPAR  231 (349)
T ss_dssp             HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHH
T ss_pred             cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHH
Confidence            36789999999995321   2344678999999999976532221111   11      2468899999999854211  


Q ss_pred             --HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         101 --EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       101 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                        ...+...+....          ........+++.+||++|.|++++++++.+.+
T Consensus       232 ~~~~~l~~~l~~~~----------~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          232 RIQAEYVSALKLLR----------KRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             HHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC----------ccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence              111222111100          00000124688999999999999999998653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.83  E-value=5.7e-08  Score=72.58  Aligned_cols=50  Identities=20%  Similarity=0.309  Sum_probs=37.9

Q ss_pred             CCCCCceeEEEECC-----------------EEEEEEEcCCChhhH----Hh---HHhhcCCCCEEEEEEECCC
Q psy2161          12 PTLHPTSEELSMGD-----------------IVFTTHDLGGHVQAR----RV---WRDYFPAVDAIVFIIDASD   61 (155)
Q Consensus        12 pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~----~~---~~~~~~~ad~ii~v~D~~~   61 (155)
                      +|++++...+.+++                 .++++|||||...+.    .+   +..+++++|++++|+|+++
T Consensus        35 tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           35 CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            47777766777765                 589999999987653    22   2345789999999999986

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.76  E-value=2.8e-08  Score=80.46  Aligned_cols=111  Identities=17%  Similarity=0.073  Sum_probs=71.4

Q ss_pred             CEEEEEEEcCCCh-------------hhHHhHHhhc-CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          25 DIVFTTHDLGGHV-------------QARRVWRDYF-PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        25 ~~~~~~~Dt~G~~-------------~~~~~~~~~~-~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      ...+.++||||-.             ....+...|+ +.+|++++|+|++....-.....++..+.    ..+.|+++|+
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVl  224 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI  224 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEE
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEE
Confidence            3679999999932             2344555555 47899999999987544333333444442    2368999999


Q ss_pred             eCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          91 NKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        91 nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ||+|+.+... ...+.. -...            ........++.+||++|.|++++++.+.+
T Consensus       225 NKiDlv~~~~~~~~il~-~~~~------------~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          225 TKLDLMDEGTDARDVLE-NKLL------------PLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             ECTTSSCTTCCSHHHHT-TCSS------------CCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             eCcccCCcchhhHHHHH-HHhh------------hhhccCCceEEecccccccchhHHHHHHH
Confidence            9999865221 122222 0110            01112346788999999999999988875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.76  E-value=1.8e-09  Score=78.96  Aligned_cols=105  Identities=11%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             EEEEEEEcCCC-------hhhHHhHH-------hhcCC-------------CCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161          26 IVFTTHDLGGH-------VQARRVWR-------DYFPA-------------VDAIVFIIDASDRSRFPESK-YELDSLLA   77 (155)
Q Consensus        26 ~~~~~~Dt~G~-------~~~~~~~~-------~~~~~-------------ad~ii~v~D~~~~~~~~~~~-~~l~~~~~   77 (155)
                      ..+++|||+|.       +.+.....       .++++             +++++|+.+.+. .+++... .++..+ .
T Consensus        76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~  153 (301)
T 2qnr_A           76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H  153 (301)
T ss_dssp             EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T
T ss_pred             cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H
Confidence            78999999997       44443333       44432             344555555432 2343332 333333 1


Q ss_pred             CCCCCCCcEEEEEeCCCcCCcC----CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          78 DDALTDVPILILGNKIDIFDAA----SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                          ...|+++|+||+|+....    ..+++.+.+..                 .++.++++||++| |++++|.++.+.
T Consensus       154 ----~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~-~v~e~f~~l~~~  211 (301)
T 2qnr_A          154 ----NKVNIVPVIAKADTLTLKERERLKKRILDEIEE-----------------HNIKIYHLPDAES-DEDEDFKEQTRL  211 (301)
T ss_dssp             ----TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHH-----------------TTCCCCCCC----------CHHHHHH
T ss_pred             ----hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHH-----------------cCCeEEecCCccc-cccHHHHHHHHH
Confidence                357999999999986421    11233333332                 3467899999999 999999888764


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      +
T Consensus       212 i  212 (301)
T 2qnr_A          212 L  212 (301)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.73  E-value=1.2e-08  Score=80.16  Aligned_cols=68  Identities=22%  Similarity=0.201  Sum_probs=53.7

Q ss_pred             EEEEEEEcCCChh-----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          26 IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        26 ~~~~~~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      .++.+|||||...           +...+..+++.+|++++|+|+++.........++..+.    ..+.|+++|+||+|
T Consensus       154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~pvilVlNK~D  229 (550)
T 2qpt_A          154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHEDKIRVVLNKAD  229 (550)
T ss_dssp             HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCGGGEEEEEECGG
T ss_pred             CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcCCCEEEEEECCC
Confidence            3699999999764           56777888999999999999987655566566666553    23579999999999


Q ss_pred             cCC
Q psy2161          95 IFD   97 (155)
Q Consensus        95 l~~   97 (155)
                      +.+
T Consensus       230 l~~  232 (550)
T 2qpt_A          230 MVE  232 (550)
T ss_dssp             GSC
T ss_pred             ccC
Confidence            865

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.66  E-value=6.1e-09  Score=74.68  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             cCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161          33 LGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY  111 (155)
Q Consensus        33 t~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~  111 (155)
                      .||+.. ........++++|+++.|+|+.+|.+....  .+. +     . ++|.++|+||+|+.+....+...+++.. 
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~-   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK-   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence            377653 233456668899999999999987655321  111 1     1 7899999999999653222233333322 


Q ss_pred             CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                                      .+..+ .+||++|.|++++++++.+.
T Consensus        74 ----------------~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 ----------------QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             ----------------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             ----------------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence                            12346 89999999999999887653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.57  E-value=3.9e-08  Score=74.86  Aligned_cols=108  Identities=13%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             EEEEEEEcCCChhhH-------Hh------------------HHhhcCCCCEEEEEEECCCC-CchHHHH-HHHHHHHhC
Q psy2161          26 IVFTTHDLGGHVQAR-------RV------------------WRDYFPAVDAIVFIIDASDR-SRFPESK-YELDSLLAD   78 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~-------~~------------------~~~~~~~ad~ii~v~D~~~~-~~~~~~~-~~l~~~~~~   78 (155)
                      ..+++||++|...+.       ..                  .+.++.++++.+++|+.... .++.... .|+..+.  
T Consensus        88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--  165 (418)
T 2qag_C           88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--  165 (418)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT--
T ss_pred             cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh--
Confidence            589999999975431       11                  12234555544444444332 3454443 5666652  


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                         .+.|+++|+||+|+......    ..+.+.+..                 .++.++++|++++.++++++..+.+.+
T Consensus       166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~-----------------~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-----------------HKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHH-----------------HTCCCCCCC-----------------C
T ss_pred             ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHH-----------------cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence               26899999999998541111    222222222                 346788999999999999888887766


Q ss_pred             C
Q psy2161         155 D  155 (155)
Q Consensus       155 ~  155 (155)
                      |
T Consensus       226 P  226 (418)
T 2qag_C          226 P  226 (418)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.54  E-value=7.6e-07  Score=66.69  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=28.6

Q ss_pred             CEEEEEEEcCCChhhH-------HhHHhhcCCCCEEEEEEECCC
Q psy2161          25 DIVFTTHDLGGHVQAR-------RVWRDYFPAVDAIVFIIDASD   61 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~-------~~~~~~~~~ad~ii~v~D~~~   61 (155)
                      +.++++|||||...+.       ..+..+++.+|++++|+|+++
T Consensus        68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            4689999999976531       233445889999999999975

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.42  E-value=9.5e-07  Score=66.30  Aligned_cols=143  Identities=15%  Similarity=0.115  Sum_probs=85.6

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChhh----H---HhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCCCC
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQA----R---RVWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDALT   82 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~----~---~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~~~   82 (155)
                      -.|+.++...+.+.+.+++++||||-...    .   ......++.||++++|+|+++|.. ++.+...+...  ...+.
T Consensus       104 ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~  181 (376)
T 4a9a_A          104 FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLN  181 (376)
T ss_dssp             SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEET
T ss_pred             CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhc
Confidence            36777788899999999999999995321    1   122344678999999999987522 12222222222  12334


Q ss_pred             CCcEEEEEeCCCcCC----------cCCHHHHHhhhcccCccCCCccc-------------------------ccccc--
Q psy2161          83 DVPILILGNKIDIFD----------AASEDEVRHFFGLYGLTTGKEFT-------------------------SREIL--  125 (155)
Q Consensus        83 ~~piilv~nK~Dl~~----------~~~~~~i~~~~~~~~~~~~~~~~-------------------------~~~~~--  125 (155)
                      .+|.+++.||+|..+          ..+.+++...+..+.++.+.-..                         ..+.+  
T Consensus       182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~  261 (376)
T 4a9a_A          182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDS  261 (376)
T ss_dssp             CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGG
T ss_pred             cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccc
Confidence            678899999999632          23445555544433332110000                         00000  


Q ss_pred             --------cCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         126 --------QMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       126 --------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                              ....-.++.+|+..+.|++++.+.+.+.|+
T Consensus       262 ~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~  299 (376)
T 4a9a_A          262 LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLN  299 (376)
T ss_dssp             SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcC
Confidence                    001123678899999999999988877653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.38  E-value=5.3e-07  Score=66.82  Aligned_cols=105  Identities=14%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--
Q psy2161          23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS--  100 (155)
Q Consensus        23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~--  100 (155)
                      .+++.+.++||+|......   .....+|.+++++|++.......++..+         ...|.++++||+|+.....  
T Consensus       145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s  212 (337)
T 2qm8_A          145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRA  212 (337)
T ss_dssp             HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHH
T ss_pred             cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHH
Confidence            3678999999999754322   2346899999999986432211111111         1246678889999643111  


Q ss_pred             ---HHHHHhhhcccCccCCCcccccccccC----ccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         101 ---EDEVRHFFGLYGLTTGKEFTSREILQM----RPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       101 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                         ...+...+..              ...    ...+++.+||++|.|++++++.+.+.
T Consensus       213 ~~~~~~l~~a~~l--------------~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          213 SAAASEYRAALHI--------------LTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             HHHHHHHHHHHTT--------------BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--------------ccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               1122221111              110    02357889999999999999988764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.27  E-value=1.4e-07  Score=69.07  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCc
Q psy2161          43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKE  118 (155)
Q Consensus        43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~  118 (155)
                      .+..++++|.+++|+|+.+|.....   .++..+......++|.++|+||+|+.+...    ...+.+.+..        
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~--------  148 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN--------  148 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh--------
Confidence            3346889999999999987644432   233333111124789999999999975322    1233333322        


Q ss_pred             ccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161         119 FTSREILQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus       119 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                               .+..++.+||++|.|++++++.+
T Consensus       149 ---------~g~~v~~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          149 ---------IGYDVYLTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             ---------HTCCEEECCHHHHTTCTTTGGGG
T ss_pred             ---------CCCeEEEEecCCCCCHHHHHhhc
Confidence                     23478899999999988776554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.09  E-value=1.8e-06  Score=59.78  Aligned_cols=57  Identities=23%  Similarity=0.271  Sum_probs=41.7

Q ss_pred             CCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..|.++|+||+|+.+.  ....++...+...               .....++++||++|.|++++|+++.+.+
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRI---------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHh---------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            3688999999998652  3455554444320               1235799999999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.95  E-value=1.7e-05  Score=59.12  Aligned_cols=87  Identities=21%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             hcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccc
Q psy2161          46 YFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREI  124 (155)
Q Consensus        46 ~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  124 (155)
                      ...++|.+++|... .|... ..+..++-...    ..++|.++|+||+|+.+......+......              
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~--------------  187 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDI--------------  187 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHH--------------
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHH--------------
Confidence            46799999987654 45333 22233332221    136788999999999753211112222222              


Q ss_pred             ccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161         125 LQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus       125 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      +...++.++.+||++|.|++++...+.
T Consensus       188 y~~~G~~v~~~Sa~~~~gl~~L~~~~~  214 (358)
T 2rcn_A          188 YRNIGYRVLMVSSHTQDGLKPLEEALT  214 (358)
T ss_dssp             HHTTTCCEEECBTTTTBTHHHHHHHHT
T ss_pred             HHhCCCcEEEEecCCCcCHHHHHHhcC
Confidence            122345689999999999998877653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.61  E-value=0.00039  Score=54.12  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=63.3

Q ss_pred             CCEEEEEEEcCCChhhH-HhHH---hh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQAR-RVWR---DY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~-~~~~---~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl~   96 (155)
                      +++.+.++||||..... ..+.   ..  +..+|.+++|+|++......   .....+..     ..|+ .+|+||+|..
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLDGH  253 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTTSC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCccc
Confidence            67899999999975321 1111   11  22799999999997653321   11222211     1564 8899999976


Q ss_pred             CcCCH-HHHHhhhcccC--ccCCCcccccccccCccEEEEEeeeccCCC-hHHHHHHHHhh
Q psy2161          97 DAASE-DEVRHFFGLYG--LTTGKEFTSREILQMRPIELFMCSVLKRQG-FGNGFRWLANY  153 (155)
Q Consensus        97 ~~~~~-~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~  153 (155)
                      ..... ..+...++..-  ++.++..   ..+.. .-+...+|++.|.| +.++++++.+.
T Consensus       254 ~~~g~~l~~~~~~g~PI~fig~ge~~---~dl~~-f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 AKGGGALSAVAATKSPIIFIGTGEHI---DDFEP-FKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCTHHHHHHHHHCCCEEEEECSSST---TCEEC-CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cchHHHHHHHHHhCCCeEEeccccch---hhhhc-cCcceeeehhcCCCcHHHHHHHHHHH
Confidence            43221 12222222100  0000000   00000 01234589999999 99999998753

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.45  E-value=0.00011  Score=55.51  Aligned_cols=52  Identities=19%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCCCceeEEEECC-----------------EEEEEEEcCCChhhHH-------hHHhhcCCCCEEEEEEECCCCC
Q psy2161          12 PTLHPTSEELSMGD-----------------IVFTTHDLGGHVQARR-------VWRDYFPAVDAIVFIIDASDRS   63 (155)
Q Consensus        12 pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~D~~~~~   63 (155)
                      +|+.++...+.+.+                 .++++|||||...+.+       .+..+++++|++++|+|+++..
T Consensus        55 tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           55 CTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ---CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            56777777776654                 3599999999876543       5677889999999999997543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.13  E-value=0.0063  Score=45.89  Aligned_cols=49  Identities=27%  Similarity=0.413  Sum_probs=36.7

Q ss_pred             CCCCceeEEEECC-----------------EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCC
Q psy2161          13 TLHPTSEELSMGD-----------------IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASD   61 (155)
Q Consensus        13 T~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~   61 (155)
                      |+.++...+.+.+                 ..+.+||+||...       ....+...++.+|++++|+|+.+
T Consensus        55 Ti~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           55 TIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             eecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6667777777765                 5799999999422       33345666789999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.02  E-value=0.0085  Score=45.74  Aligned_cols=66  Identities=15%  Similarity=0.192  Sum_probs=40.6

Q ss_pred             CCEEEEEEEcCCChhhHH-hH---H--hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC-c-EEEEEeCCCc
Q psy2161          24 GDIVFTTHDLGGHVQARR-VW---R--DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV-P-ILILGNKIDI   95 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~-~~---~--~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~-p-iilv~nK~Dl   95 (155)
                      +++.+.++||||...... ..   .  ..+..+|.+++|+|++...  + .......+ +.    .. | ..+|+||+|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~~----~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-KE----AVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-HT----TSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-hh----cccCCeEEEEeCCCC
Confidence            568899999999754211 11   1  1223689999999986542  1 22222222 11    24 5 8899999997


Q ss_pred             CC
Q psy2161          96 FD   97 (155)
Q Consensus        96 ~~   97 (155)
                      ..
T Consensus       251 ~~  252 (432)
T 2v3c_C          251 SA  252 (432)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.35  E-value=0.042  Score=42.07  Aligned_cols=66  Identities=11%  Similarity=0.054  Sum_probs=39.2

Q ss_pred             CCEEEEEEEcCCChhhH-----Hh--HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQAR-----RV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~-----~~--~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      +++.+.++||+|.....     .+  ... ...+|.+++|+|++......   .....+...    -.+..+|+||.|..
T Consensus       181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~-~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~----~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          181 KGVDIIIVDTAGRHKEDKALIEEMKQISN-VIHPHEVILVIDGTIGQQAY---NQALAFKEA----TPIGSIIVTKLDGS  252 (443)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHH-HHCCSEEEEEEEGGGGGGHH---HHHHHHHHS----CTTEEEEEECCSSC
T ss_pred             CCCCEEEEECCCcccchHHHHHHHHHHHH-hhcCceEEEEEeCCCchhHH---HHHHHHHhh----CCCeEEEEECCCCc
Confidence            45789999999953211     11  112 23689999999997543222   222222211    24667899999975


Q ss_pred             C
Q psy2161          97 D   97 (155)
Q Consensus        97 ~   97 (155)
                      .
T Consensus       253 ~  253 (443)
T 3dm5_A          253 A  253 (443)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.81  E-value=0.068  Score=35.78  Aligned_cols=69  Identities=14%  Similarity=0.076  Sum_probs=46.3

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCcCC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-LTDVPILILGNKIDIFD   97 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~~~~piilv~nK~Dl~~   97 (155)
                      ++.+.++|+|+...  ......+..+|.+++++..+...  ..+...++.+..... ..+.++.+|.|+.|...
T Consensus        75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            47889999998662  33444556799999999876543  555555555543221 23567899999999543

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.63  E-value=0.2  Score=34.40  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV  104 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i  104 (155)
                      ++.+.++|+|+....  .....+..+|.+++++..+ ..+...+...++.+.. .......+-+|.|+.+.......+++
T Consensus       118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~v~N~~~~~~~~~~~~~  193 (245)
T 3ea0_A          118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE-FEKPISRIEIILNRADTNSRITSDEI  193 (245)
T ss_dssp             HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT-CSSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred             hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH-hCCCccceEEEEecCCCCCCCCHHHH
Confidence            367899999886532  3444567899999998764 3445555566665532 22234578899999997666666677


Q ss_pred             Hhhhcc
Q psy2161         105 RHFFGL  110 (155)
Q Consensus       105 ~~~~~~  110 (155)
                      .+.++.
T Consensus       194 ~~~~~~  199 (245)
T 3ea0_A          194 EKVIGR  199 (245)
T ss_dssp             HHHHTS
T ss_pred             HHHhCC
Confidence            666654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=92.16  E-value=0.27  Score=35.50  Aligned_cols=65  Identities=15%  Similarity=0.042  Sum_probs=40.4

Q ss_pred             CCEEEEEEEcCCChh--hHH-hHH-----hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQ--ARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~--~~~-~~~-----~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~D   94 (155)
                      +++.+.++||||...  ... +..     .....+|.+++|+|++..   .........+..     ..| ..+|.||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            568899999999765  321 221     123479999999998643   122222233321     245 778899999


Q ss_pred             cC
Q psy2161          95 IF   96 (155)
Q Consensus        95 l~   96 (155)
                      ..
T Consensus       251 ~~  252 (297)
T 1j8m_F          251 GT  252 (297)
T ss_dssp             GC
T ss_pred             CC
Confidence            74

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=92.00  E-value=0.68  Score=32.38  Aligned_cols=67  Identities=10%  Similarity=0.020  Sum_probs=42.2

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCc
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDI   95 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl   95 (155)
                      +++.+.++|+|+...........+..+|.+++++..+ ..+...+...++.+..    .+.+++ +|.|+.|.
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~  194 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE----TNTSVLGLVENMSYF  194 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence            4588999999986532211111122589999998765 3445555556555532    246776 89999874

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=91.57  E-value=0.97  Score=31.52  Aligned_cols=66  Identities=8%  Similarity=0.025  Sum_probs=44.2

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      +.+.+.++|+|+...  ......+..||.+++++..+ ..+...+...+..+... . .+.++.+|+|+..
T Consensus       143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~-~-~~~~~~vv~N~~~  208 (267)
T 3k9g_A          143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKL-N-LFLPIFLIITRFK  208 (267)
T ss_dssp             TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTT-T-CCCCEEEEEEEEC
T ss_pred             cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHH-h-ccCCEEEEEeccc
Confidence            347899999998653  23444566799999999875 34555555555555322 1 2467889999994

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=91.17  E-value=0.36  Score=32.69  Aligned_cols=67  Identities=10%  Similarity=0.005  Sum_probs=43.9

Q ss_pred             CEEEEEEEcCCC-hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          25 DIVFTTHDLGGH-VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        25 ~~~~~~~Dt~G~-~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ++.+.++|+|+. ...  .....+..+|.+++++..+ ..+...+...++.+....   +.++.+|+|+.|...
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            477899999986 432  2334566899999998764 234444445555543312   467889999998653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=90.66  E-value=0.47  Score=36.19  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=39.3

Q ss_pred             CCEEEEEEEcCCChh------hHHh---HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQ------ARRV---WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~------~~~~---~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      +++.+.++||||...      ....   ..... ..+.+++|+|++...........+.+.       -.+..+|+||.|
T Consensus       178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD  249 (433)
T 3kl4_A          178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD  249 (433)
T ss_dssp             TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred             cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence            357889999999533      1111   11222 578999999997543332222333322       146788999999


Q ss_pred             cC
Q psy2161          95 IF   96 (155)
Q Consensus        95 l~   96 (155)
                      ..
T Consensus       250 ~~  251 (433)
T 3kl4_A          250 GT  251 (433)
T ss_dssp             GC
T ss_pred             cc
Confidence            64

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.40  E-value=1.6  Score=33.03  Aligned_cols=116  Identities=13%  Similarity=0.087  Sum_probs=59.9

Q ss_pred             EEEEEEcCCChh----hHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC-----
Q psy2161          27 VFTTHDLGGHVQ----ARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF-----   96 (155)
Q Consensus        27 ~~~~~Dt~G~~~----~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~-----   96 (155)
                      .+.+||++|-..    ...+.. .-+...+..++ ++.....   ..+..+...+..   .++|+++|.||.|+.     
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEP  193 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEA  193 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHH
T ss_pred             CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCcccccCcc
Confidence            689999998421    122221 12334455555 6664211   222223322222   258999999999853     


Q ss_pred             ----CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeee--ccCCChHHHHHHHHhhcC
Q psy2161          97 ----DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSV--LKRQGFGNGFRWLANYID  155 (155)
Q Consensus        97 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~~~~l~~~i~  155 (155)
                          +.....++.+.+.....      ..........-.++.+|+  ..+.|++++.+.+.+.+|
T Consensus       194 tsgLD~~~~~~l~~~l~~l~~------~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          194 DGEPQTFDKEKVLQDIRLNCV------NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHH------HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             cccCCHHHHHHHHHHHHHHHH------HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence                12234444333322000      000000011235788999  667789999999987764

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=88.63  E-value=2.3  Score=28.79  Aligned_cols=79  Identities=9%  Similarity=-0.037  Sum_probs=49.5

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc-CCHHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA-ASEDE  103 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~  103 (155)
                      ++.+.++|+|+...  ......+..+|.+++++..+ ..+...+...+..+.+.   ...+.-+|.|+.+.... ....+
T Consensus       111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~  184 (237)
T 1g3q_A          111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEA  184 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHH
T ss_pred             cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHH
Confidence            37799999988654  33445677899999998764 23445555555555332   22456788999986432 34455


Q ss_pred             HHhhhc
Q psy2161         104 VRHFFG  109 (155)
Q Consensus       104 i~~~~~  109 (155)
                      +.+.++
T Consensus       185 ~~~~~~  190 (237)
T 1g3q_A          185 AEDVME  190 (237)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            555444

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=87.53  E-value=0.63  Score=32.41  Aligned_cols=70  Identities=14%  Similarity=0.050  Sum_probs=42.4

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH---HHHHHHhCCCCCCCcEE-EEEeCCCcCC
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY---ELDSLLADDALTDVPIL-ILGNKIDIFD   97 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~---~l~~~~~~~~~~~~pii-lv~nK~Dl~~   97 (155)
                      .++.+.++|+|+.....  ....+..||.+++++..+. .++..+..   .+..+... ...+.+++ +|.|+.|...
T Consensus       110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~~  183 (257)
T 1wcv_1          110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGRT  183 (257)
T ss_dssp             TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTTC
T ss_pred             cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCCc
Confidence            55889999999865322  2233456999999998753 33333333   33333211 12356664 8999998643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=87.33  E-value=1.6  Score=33.21  Aligned_cols=66  Identities=12%  Similarity=0.050  Sum_probs=39.0

Q ss_pred             CCEEEEEEEcCCChhhH-HhHH-----hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161          24 GDIVFTTHDLGGHVQAR-RVWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF   96 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~-~~~~-----~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~   96 (155)
                      +++.+.++||||..... ....     .....++.+++|+|+......-   .....+..     ..+ .-+|+||.|..
T Consensus       182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred             CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence            46889999999964431 1111     2244789999999987543221   12222211     123 34688999975


Q ss_pred             C
Q psy2161          97 D   97 (155)
Q Consensus        97 ~   97 (155)
                      .
T Consensus       254 ~  254 (433)
T 2xxa_A          254 A  254 (433)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=86.14  E-value=0.69  Score=31.65  Aligned_cols=78  Identities=14%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHH
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE  103 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  103 (155)
                      +++.+.++|+|+....  .....+..||.++++++.+ ..++..+....+.. ...  ....+.+|.|+.+..  ...++
T Consensus       130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~-~~~--~~~~~~~v~N~~~~~--~~~~~  201 (254)
T 3kjh_A          130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLA-GDL--GIKKVRYVINKVRNI--KEEKL  201 (254)
T ss_dssp             TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHH-HHH--TCSCEEEEEEEECCH--HHHHH
T ss_pred             CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHH-HHc--CCccEEEEEeCCCCh--hHHHH
Confidence            4588999999875533  3344467899999999764 23344444443322 211  125688999999832  12344


Q ss_pred             HHhhhc
Q psy2161         104 VRHFFG  109 (155)
Q Consensus       104 i~~~~~  109 (155)
                      +.+.++
T Consensus       202 ~~~~~~  207 (254)
T 3kjh_A          202 IKKHLP  207 (254)
T ss_dssp             HHHHSC
T ss_pred             HHHHhc
Confidence            555444

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=85.83  E-value=0.043  Score=40.94  Aligned_cols=66  Identities=12%  Similarity=0.014  Sum_probs=38.2

Q ss_pred             EEEEEEcCCChhhH--------HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          27 VFTTHDLGGHVQAR--------RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        27 ~~~~~Dt~G~~~~~--------~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      .+.++||||-....        .....++  +..+.++|+++......+..... ++.+ .   ..+.|+++++||.|..
T Consensus       213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l-~---~~~~~~~~v~~k~d~~  287 (369)
T 3ec1_A          213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI-K---GGRRSFVCYMANELTV  287 (369)
T ss_dssp             TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE-E---SSSEEEEEEECTTSCE
T ss_pred             CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEc-c---CCCceEEEEecCCccc
Confidence            48999999953211        1122222  67899999998843211111000 1111 1   2357999999999975


Q ss_pred             C
Q psy2161          97 D   97 (155)
Q Consensus        97 ~   97 (155)
                      .
T Consensus       288 ~  288 (369)
T 3ec1_A          288 H  288 (369)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=85.82  E-value=1  Score=31.13  Aligned_cols=82  Identities=13%  Similarity=0.062  Sum_probs=50.4

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-----CCCCCcEEEEEeCCCcCC--
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-----ALTDVPILILGNKIDIFD--   97 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-----~~~~~piilv~nK~Dl~~--   97 (155)
                      ++.+.++|+|+....  .....+..+|.++++++.+ ..+...+...+..+....     .....++-+|.|+.+...  
T Consensus       113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~  189 (260)
T 3q9l_A          113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS  189 (260)
T ss_dssp             TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred             CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence            678999999985532  4445566899999999764 334455555555553211     012357889999998532  


Q ss_pred             ---cCCHHHHHhhhc
Q psy2161          98 ---AASEDEVRHFFG  109 (155)
Q Consensus        98 ---~~~~~~i~~~~~  109 (155)
                         .....++.+.++
T Consensus       190 ~~~~~~~~~~~~~~~  204 (260)
T 3q9l_A          190 RGDMLSMEDVLEILR  204 (260)
T ss_dssp             TTSSCCHHHHHHHHC
T ss_pred             cccccCHHHHHHHhC
Confidence               123355555554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=81.47  E-value=0.13  Score=38.25  Aligned_cols=72  Identities=8%  Similarity=0.053  Sum_probs=39.6

Q ss_pred             EEEEEcCCChhhH--------HhHHhh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          28 FTTHDLGGHVQAR--------RVWRDY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        28 ~~~~Dt~G~~~~~--------~~~~~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +.++||||-....        .....+  .+..+.++|+++......+.... .++ .+.   ..+.|+++++||+|...
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-~~d-~l~---~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA-RFD-YVS---GGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-EEE-EEE---SSSEEEEEEECTTSCEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-EEE-Eec---CCCceEEEEecCccccc
Confidence            8999999953211        112222  35788899999874321111100 011 111   13579999999999765


Q ss_pred             cCCHHHH
Q psy2161          98 AASEDEV  104 (155)
Q Consensus        98 ~~~~~~i  104 (155)
                      ....+..
T Consensus       288 ~~~~~~~  294 (368)
T 3h2y_A          288 RTKLEKA  294 (368)
T ss_dssp             EEEHHHH
T ss_pred             cccHHHH
Confidence            3333333

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=81.30  E-value=4  Score=32.42  Aligned_cols=69  Identities=13%  Similarity=0.117  Sum_probs=40.2

Q ss_pred             EEEEEEEcCCC-------------hhhHHhHHhhcCCCC-EEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          26 IVFTTHDLGGH-------------VQARRVWRDYFPAVD-AIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        26 ~~~~~~Dt~G~-------------~~~~~~~~~~~~~ad-~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      -.+.+.|.||-             .....+...|++... +++++++.+....-.........+    ...+.++++|+|
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlT  222 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILT  222 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEec
Confidence            56899999962             234456667666554 445555443221122233444444    223679999999


Q ss_pred             CCCcCCc
Q psy2161          92 KIDIFDA   98 (155)
Q Consensus        92 K~Dl~~~   98 (155)
                      |.|+.+.
T Consensus       223 K~Dlv~~  229 (608)
T 3szr_A          223 KPDLVDK  229 (608)
T ss_dssp             CGGGSSS
T ss_pred             chhhcCc
Confidence            9998753

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=81.18  E-value=1.5  Score=30.37  Aligned_cols=66  Identities=9%  Similarity=0.011  Sum_probs=41.6

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ++.+.++|+|+...  ......+..+|.+++++..+ ..+...+...+..+...   ...++-+|.|+.+..
T Consensus       110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~  175 (263)
T 1hyq_A          110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL  175 (263)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred             hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence            47799999997654  33334456799999998654 23344444444444322   124566889999854

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=80.75  E-value=11  Score=26.67  Aligned_cols=67  Identities=9%  Similarity=-0.107  Sum_probs=42.6

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      +.+.++|+|....... .....+.||++++|+.... .+...+...++.+....   ...+-+|+|+.|...
T Consensus       202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g---~~~~GvVlN~v~~~~  268 (286)
T 3la6_A          202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG---IPVKGVILNSIFRRA  268 (286)
T ss_dssp             CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT---CCCCEEEEEEECCCC
T ss_pred             CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC---CCEEEEEEcCccccc
Confidence            5689999998653321 2334567999999998754 34455555555553321   345667889998643

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=80.58  E-value=3.9  Score=28.81  Aligned_cols=65  Identities=14%  Similarity=0.133  Sum_probs=41.0

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcC
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIF   96 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~   96 (155)
                      +.+.++|+|+...... .....+.+|.+++|+.... .+...+...++.+.+    .+.+++ +|+|+.|..
T Consensus       192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~  257 (271)
T 3bfv_A          192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD  257 (271)
T ss_dssp             CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred             CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence            6789999998543211 1222346899999998753 455555555555532    245665 889999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-16
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-15
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-14
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-13
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	9e-13
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-12
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-10
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-08
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-08
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-06
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	5e-05
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	7e-05
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-04
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-04
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-04
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	0.001

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 82.8 bits (203), Expect = 4e-21
 Identities = 96/154 (62%), Positives = 121/154 (78%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK+DR  QH+PTLHPTSEEL++  + FTT DLGGH+QARRVW++Y PA++ IVF++D +D
Sbjct: 33  LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD 92

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
             R  ESK ELDSL+ D+ + +VPILILGNKID  +A SE+ +R  FGLYG TTGK   S
Sbjct: 93  HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 152

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
            + L  RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 153 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 186

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (167), Expect = 5e-16
 Identities = 81/152 (53%), Positives = 104/152 (68%), Gaps = 5/152 (3%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LKNDR A   PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+D
Sbjct: 20  LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD 79

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
             RF E++ ELD+L     L DVP +ILGNKID  +A SE E+R   GL   T  +    
Sbjct: 80  PERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE- 138

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANY 153
                 RP+E+FMCSV+ R G+   F+WL+ Y
Sbjct: 139 ----GQRPVEVFMCSVVMRNGYLEAFQWLSQY 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 66.9 bits (162), Expect = 3e-15
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           L ++  +   PT     + +          D+GG  + R  WR YF   D ++++ID++D
Sbjct: 36  LASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R RF E+  EL  LL ++ L+ VP+LI  NK D+  AA   E+     L           
Sbjct: 96  RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL----------- 144

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              ++ R  ++  CS L  +G  +G  W+   +
Sbjct: 145 -HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 1e-14
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK  ++   +PT+    E ++  ++ F   D+GG  + R +WR Y+     ++F++D +D
Sbjct: 32  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 91

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E++ EL  ++ D  + D  ILI  NK D+ DA    E++   GL           
Sbjct: 92  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL----------- 140

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              ++ R   +         G   G  WL +  
Sbjct: 141 -TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 8e-13
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           LK       +PT+    E +   +I FT  D+GG  + R +WR YF     ++F++D++D
Sbjct: 20  LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  E++ EL  +LA+D L D  +L+  NK D+ +A +  E+    GL           
Sbjct: 80  RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL----------- 128

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              L+ R   +         G   G  WL+N +
Sbjct: 129 -HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 9e-13
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 12/154 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
            L+        PT+    E LS  ++     DLGG    R  WR Y+    A++F++D++
Sbjct: 36  RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST 95

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D+ R   +  EL  +L ++ L D  +L+  NK D   A S  EV     L  L       
Sbjct: 96  DKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL------- 148

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                + R   +   S +K +G   G  WL + I
Sbjct: 149 -----KDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-12
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
              +      PT+    EE+ + +  F   D+GG    R  W  Y+   + ++ ++D++D
Sbjct: 35  FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 94

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R   ++ EL  +LA + L    +LI  NK D+ +  +  E+  F  L           
Sbjct: 95  RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL----------- 143

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              ++     +  C  L  +G   G  W+ + +
Sbjct: 144 -TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 3e-10
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
              +      PTL    + L          D+GG    R  WR+YF + D +++++D++D
Sbjct: 22  FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 81

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R  + + EL SLL ++ L    +LI  NK D+  A S + ++    L  +        
Sbjct: 82  RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI-------- 133

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
               +     +  CS +  +    G  WL + I
Sbjct: 134 ----RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (129), Expect = 4e-10
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           ++K  R    + T      +  +  + F   D+GG    RR W   F  V AI+F++ +S
Sbjct: 22  IVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 81

Query: 61  ----------DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA---ASEDEVRHF 107
                       +R  E+     S+  +  L  + +++  NK D+      A + ++  +
Sbjct: 82  SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDY 141

Query: 108 FGLYG 112
           F  + 
Sbjct: 142 FPEFA 146

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-08
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 1   MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
           +         +PT+     +++ G++     D+GG  + R +W  Y   V AIV+++DA+
Sbjct: 22  IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81

Query: 61  DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
           D+ +   SK EL +LL    L  +P+L+LGNK D+  A  E E+     L          
Sbjct: 82  DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL---------- 131

Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
               +Q R I  +  S  ++       +WL  + 
Sbjct: 132 --SAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 9e-08
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV----WRDYFPAVDAIVFII 57
           L   +      ++  +S    + +    +  L        +       +  +  A+VF++
Sbjct: 20  LLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 79

Query: 58  DASDRSRFPES-KYELDSLLADDALTD--VPILILGNKIDIFDAASEDEVR 105
           D++   R  +     L  +L D         +LI  NK DI  A S   ++
Sbjct: 80  DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQ 130

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-06
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 19/135 (14%)

Query: 23  MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82
               V    D  G  Q   +   Y       + +    ++  F + K   D ++      
Sbjct: 48  SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE 107

Query: 83  DVPILILGNKIDI--FDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR 140
            VP++++GNK+D+      S  E R     +G                       S   +
Sbjct: 108 KVPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSK 150

Query: 141 QGFGNGFRWLANYID 155
                 F  +   ++
Sbjct: 151 TMVDELFAEIVRQMN 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 12/153 (7%)

Query: 2   LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
           L+       +PT+    E ++  ++ F   DLGG    R  WR Y+   DA+++++D+ D
Sbjct: 25  LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD 84

Query: 62  RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
           R R   SK EL ++L ++ L    +++  NK D+  A +  E+ +  G            
Sbjct: 85  RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLG------------ 132

Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
              L+ R  ++F  S  K  G      WL   +
Sbjct: 133 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 36  HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95
             +ARR   +    +D +  ++DA    R P S    + ++  D L + P ++L NK D 
Sbjct: 2   MAKARREVTEKLKLIDIVYELVDA----RIPMS--SRNPMIE-DILKNKPRIMLLNKADK 54

Query: 96  FDAASEDEVRHFFGLYG 112
            DAA   + +  F   G
Sbjct: 55  ADAAVTQQWKEHFENQG 71

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)

Query: 28  FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87
               D  G  + RR+   Y+      + + D +    +   +  L  L  D A +++ I+
Sbjct: 55  AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIM 113

Query: 88  ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147
           ++GNK D+    +                         +   +     S L        F
Sbjct: 114 LVGNKSDLRHLRAVPTDEAR---------------AFAEKNNLSFIETSALDSTNVEEAF 158

Query: 148 RWLANYI 154
           + +   I
Sbjct: 159 KNILTEI 165

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 25  DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84
            I     D  G  + R +   Y+     I+ + D ++   F   +  + ++    +  DV
Sbjct: 54  RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADV 112

Query: 85  PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144
             +ILGNK D+ D     + R                  +     I+    S        
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEK---------------LALDYGIKFMETSAKANINVE 157

Query: 145 NGFRWLANYI 154
           N F  LA  I
Sbjct: 158 NAFFTLARDI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 21/157 (13%)

Query: 2   LKNDRTAQHMPTLHPTSE----ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 57
           +++      + T+    +    +++   +     D  G  + R +   Y+     I+ + 
Sbjct: 23  VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 82

Query: 58  DASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK 117
           D +D   F  +  +    + + A  +  +L++GNK D+       +              
Sbjct: 83  DITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-------------- 127

Query: 118 EFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
                 + +   I     S          F  LA  I
Sbjct: 128 --QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 15/140 (10%)

Query: 15  HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS 74
            P         +     D  G  + R +   +F      + + D + +  F   +  +  
Sbjct: 53  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 112

Query: 75  LLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFM 134
           L A+    +  I+++GN                  L       E  +RE+     I  F 
Sbjct: 113 LQANAYCENPDIVLIGN---------------KADLPDQREVNERQARELADKYGIPYFE 157

Query: 135 CSVLKRQGFGNGFRWLANYI 154
            S    Q        L + I
Sbjct: 158 TSAATGQNVEKAVETLLDLI 177

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 28  FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87
               D  G      +  +YF + +  + +   ++   F  +    + +L      +VP L
Sbjct: 54  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113

Query: 88  ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147
           ++GNK D+ D                                +     S   R      F
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKN---------------RADQWNVNYVETSAKTRANVDKVF 158

Query: 148 RWLANYI 154
             L   I
Sbjct: 159 FDLMREI 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.91
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.82
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.77
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.74
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.72
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.63
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.63
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.62
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.62
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.59
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.59
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.58
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.51
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.49
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.48
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.4
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.4
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.39
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.34
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.28
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.27
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.25
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.21
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.11
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.1
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.88
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.71
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.71
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.57
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.42
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.24
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.08
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.0
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.77
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.7
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.65
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.94
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.9
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.15
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.07
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.02
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.52

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=3.6e-29  Score=169.47  Aligned_cols=142  Identities=30%  Similarity=0.531  Sum_probs=123.1

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||++++...+.||.+.....+..+++++.+||+||++.++..+..++++++++++|+|++++.++.....|+...+....
T Consensus        36 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~  115 (182)
T d1moza_          36 RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE  115 (182)
T ss_dssp             HTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST
T ss_pred             HHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc
Confidence            46777888889999999999999999999999999999999999999999999999999999999999999988877777


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+..+..++...+...            .+....+++++|||++|.|++++|+||.+.+
T Consensus       116 ~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i  177 (182)
T d1moza_         116 LQDAALLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGEGITEGLDWLIDVI  177 (182)
T ss_dssp             TSSCEEEEEEECTTSTTCCCHHHHHHHTTTT------------TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             cCCcceEEEEEeeccccccCHHHHHHHHHHH------------HHhhCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            7789999999999998878888888877652            2455678999999999999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=1.1e-28  Score=164.59  Aligned_cols=142  Identities=26%  Similarity=0.508  Sum_probs=124.6

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||+++....+.||.|.....++.+++.+.+||+||++.++..++.+++.++++++|+|+++..++.....++...+....
T Consensus        21 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~  100 (165)
T d1ksha_          21 KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER  100 (165)
T ss_dssp             HHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             HHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc
Confidence            35677888999999999999999999999999999999999999999999999999999999999998888887777666


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+.....+....+..            ..+..+++.+++|||++|.|++++|+||.+.+
T Consensus       101 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         101 LAGATLLIFANKQDLPGALSCNAIQEALEL------------DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             GTTCEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCceEEEEeccccccccCHHHHHHHHHh------------hhhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999887777777776654            22445678999999999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=7.9e-29  Score=165.26  Aligned_cols=141  Identities=28%  Similarity=0.513  Sum_probs=124.1

Q ss_pred             CCCCCC-CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           2 LKNDRT-AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      |+++++ ..+.||+|++...++.+++++.+||+||+..+...|..++++++++++|||+++..++.....|+..+++...
T Consensus        22 l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T d1zd9a1          22 IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ  101 (164)
T ss_dssp             HHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             HHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhc
Confidence            344554 5688999999999999999999999999999999999999999999999999999999999999999987776


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++|+++|+||+|+.+.....++.+.+...            .+....+.+++|||++|.|++++|+||.+++
T Consensus       102 ~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         102 LQGIPVLVLGNKRDLPGALDEKELIEKMNLS------------AIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             GTTCCEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             ccCCcEEEEEeccccchhhhHHHHHHHHHHH------------HHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            7789999999999998877778887777652            2445678999999999999999999999875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=8.9e-29  Score=166.50  Aligned_cols=142  Identities=30%  Similarity=0.581  Sum_probs=125.3

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||.++++..+.||.|+....+..+++.+.+||++|++.++..|..+++.+|++++|||+++..++..+..|+..+.....
T Consensus        35 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~  114 (176)
T d1fzqa_          35 QLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK  114 (176)
T ss_dssp             HHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG
T ss_pred             HHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc
Confidence            46778888889999999999999999999999999999999999999999999999999999999999989888877666


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..++|+++|+||+|+.+......+.+.+...            ....+.+.+++|||++|.|++++|+||++.|
T Consensus       115 ~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         115 LSCVPVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             GTTCCEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cCCCeEEEEEEeccccccccHHHHHHHHHHH------------HHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            6789999999999998877777777766541            2345678999999999999999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=165.69  Aligned_cols=142  Identities=27%  Similarity=0.541  Sum_probs=127.2

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||.+++.....||.++.........+.+.+||+||+..++..+..++++++++++|+|+++.+++..+..|+...+++..
T Consensus        31 rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~  110 (173)
T d1e0sa_          31 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE  110 (173)
T ss_dssp             HTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG
T ss_pred             HHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcc
Confidence            57788888899999999999999999999999999999999999999999999999999999999999999988877666


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.+.....++...+..            ..+...++.+++|||++|+||+|+|+||.+.+
T Consensus       111 ~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~------------~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         111 MRDAIILIFANKQDLPDAMKPHEIQEKLGL------------TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             GTTCEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cccceeeeeeecccccccccHHHHHHHHHH------------HHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            678999999999999887788888887665            23555688999999999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-28  Score=163.14  Aligned_cols=135  Identities=18%  Similarity=0.166  Sum_probs=98.4

Q ss_pred             CCCCCCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           3 KNDRTAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      .+++...+.||.+.. ...+.+++  +.+.+||++|++.++.++..+++++|++++|||++++.+++.+..|+.++....
T Consensus        22 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~  101 (168)
T d2gjsa1          22 GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR  101 (168)
T ss_dssp             HTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred             hCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhccc
Confidence            445555666777665 56677777  899999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+|+++|+||+|+.+  .++..+..+....                 .++++++|||++|.|++++|++|++.+
T Consensus       102 ~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         102 QTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-----------------FDCKFIETSAALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             C--CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccceEEEeecccchhhhcchhHHHHHHHHHh-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            566789999999999876  4556666555444                 346899999999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-27  Score=159.94  Aligned_cols=135  Identities=19%  Similarity=0.296  Sum_probs=106.8

Q ss_pred             CCCCCC-CCcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           1 MLKNDR-TAQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         1 ~l~~~~-~~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      |+.+++ ...+.||+|...  ..+..++  +.+.+|||+|+..+..+++.++++++++++|||++++++|+.+..|+..+
T Consensus        22 ~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~  101 (170)
T d1i2ma_          22 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL  101 (170)
T ss_dssp             TTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHH
T ss_pred             HHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHH
Confidence            466676 457889999864  3444444  89999999999999999999999999999999999999999999999888


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          76 LADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+..  .+.|+++|+||+|+.......+......                 ..++.+++|||++|.|++++|++|++.|
T Consensus       102 ~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         102 VRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----------------KKNLQYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             HHHH--CSCCEEEEEECCCCSCSCCTTTSHHHHS-----------------SCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             hhcc--CCCceeeecchhhhhhhhhhhHHHHHHH-----------------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            7543  4799999999999976433332222222                 2467899999999999999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=2.7e-27  Score=158.47  Aligned_cols=135  Identities=18%  Similarity=0.251  Sum_probs=111.6

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .+++ ...+.||.+.. ...+.+++  +.+.+||++|+..+..++..+++++|++++|||++++.+++.+..|+.++.+.
T Consensus        25 ~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~  104 (168)
T d1u8za_          25 MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV  104 (168)
T ss_dssp             HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHh
Confidence            4455 46788999986 45666776  78999999999999999999999999999999999999999999999988765


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|+++|+||+|+.+  .++.+++......                 .++.+++|||++|.|++++|++|++.|
T Consensus       105 ~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             HCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hCCCCCcEEEEeccccccccccccHHHHHHHHHH-----------------cCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            4556899999999999876  4667777666555                 346899999999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-26  Score=155.33  Aligned_cols=134  Identities=14%  Similarity=0.254  Sum_probs=112.9

Q ss_pred             CCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161           4 NDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD   79 (155)
Q Consensus         4 ~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~   79 (155)
                      +++ ...+.||.+.. ...+..++  +.+.+||++|++.+...++.+++++|++++|||++++.+|..+..|+..+.+..
T Consensus        26 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~  105 (169)
T d1x1ra1          26 QKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK  105 (169)
T ss_dssp             HSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             hCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhc
Confidence            444 45778998875 45566666  899999999999999999999999999999999999999999999999987655


Q ss_pred             CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC-ChHHHHHHHHhhc
Q psy2161          80 ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ-GFGNGFRWLANYI  154 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~i  154 (155)
                      ...+.|+++++||+|+..  .++.+++.+....                 .++.+++|||++|. ||+++|+.|++.+
T Consensus       106 ~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~-----------------~~~~~~e~Sak~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         106 DRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIPYIETSAKDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             cccCccEEEEecccchhhhceeehhhHHHHHHH-----------------cCCEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence            556899999999999876  4667777776655                 34679999999986 9999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-26  Score=155.23  Aligned_cols=137  Identities=15%  Similarity=0.225  Sum_probs=111.4

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +..+++ +.+.||++.. ...+..++  +.+.+||++|+..+...++.+++++|++++|||++++.+|+.+..|+..+.+
T Consensus        23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~  102 (167)
T d1c1ya_          23 FVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR  102 (167)
T ss_dssp             HHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHH
Confidence            345554 4678999875 44445544  8999999999999999999999999999999999999999999999988876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....++.|+++|+||+|+..  ....++........                .++.+++|||++|.|++++|++|++.|
T Consensus       103 ~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         103 VKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             HHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEEEecCcccccccchhHHHHHHHHh----------------CCCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence            54556789999999999876  34555555544331                346899999999999999999999876

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.1e-26  Score=152.22  Aligned_cols=134  Identities=19%  Similarity=0.289  Sum_probs=108.5

Q ss_pred             CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .+++ ...+.||.+..  ...+...+  +++++|||||++.+..+++.++++||++|+|||+++++++.....|+..+..
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~  105 (169)
T d3raba_          26 ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT  105 (169)
T ss_dssp             HHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhc
Confidence            3445 45778888875  44555555  8999999999999999999999999999999999999999988888876644


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . .....|+++|+||+|+.+  .++.+++......                 .++++++|||++|.|++++|++|++.|
T Consensus       106 ~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         106 Y-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADH-----------------LGFEFFEASAKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             H-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             c-cCCcceEEEEEeecccccccccchhhhHHHHHH-----------------cCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            3 345789999999999876  4556666555443                 346899999999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-26  Score=152.16  Aligned_cols=136  Identities=20%  Similarity=0.220  Sum_probs=111.8

Q ss_pred             CCCCC-CCcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +++++ ...+.||.+....  .+..++  +++.+||++|++.+...+..++++++++++|||.+++.++..+..|+..+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~   99 (164)
T d1yzqa1          20 FMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR   99 (164)
T ss_dssp             HHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             HHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHH
Confidence            34455 4577899888644  344444  899999999999999999999999999999999999999999999998876


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.. ..+.|+++|+||+|+.+  ....++..+....                 .++.+++|||++|.||+++|++|++.|
T Consensus       100 ~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         100 TER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             HHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             Hhc-CCCceEEEEecccchhhhhhhhHHHHHHHHHH-----------------cCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            533 35789999999999875  4555566665554                 356899999999999999999999987


Q ss_pred             C
Q psy2161         155 D  155 (155)
Q Consensus       155 ~  155 (155)
                      +
T Consensus       162 ~  162 (164)
T d1yzqa1         162 P  162 (164)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-26  Score=155.30  Aligned_cols=136  Identities=16%  Similarity=0.181  Sum_probs=114.4

Q ss_pred             CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.+++ ...+.||.+.. ...+.+++  +.+.+||++|...+..++..+++++|++++|||++++++|+.+..|+..+.+
T Consensus        24 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~  103 (167)
T d1xtqa1          24 FVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD  103 (167)
T ss_dssp             HHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence            34455 45678999986 56677777  8899999999999999999999999999999999999999999999998876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....+.|+++|+||+|+..  .++.+++..+...                 .++.+++|||++|.|++++|+.+++.+
T Consensus       104 ~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~-----------------~~~~~~e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         104 MVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----------------WNAAFLESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             HHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccceeeeccccccccccchhHHHHHHHHHH-----------------cCCEEEEEecCCCCCHHHHHHHHHHHh
Confidence            55556789999999999865  4667776665554                 346899999999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=154.83  Aligned_cols=136  Identities=18%  Similarity=0.284  Sum_probs=112.2

Q ss_pred             CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.+++ ...+.||.+.. ...+.+++  +.+.+||++|+..+...+..++++++++++|||++++.+|..+..|+..+.+
T Consensus        26 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  105 (173)
T d2fn4a1          26 FIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR  105 (173)
T ss_dssp             HHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHH
Confidence            34455 34667776654 56677777  8899999999999999999999999999999999999999999999988876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....+.|+++|+||+|+.+  ....+++......                 .++++++|||++|.||+++|++|++.+
T Consensus       106 ~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sak~g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         106 VKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAYFEASAKLRLNVDEAFEQLVRAV  167 (173)
T ss_dssp             HHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HhccCCCceEEEEEeechhhccccchhhhhHHHHh-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            54556789999999999875  4556666666554                 346899999999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.4e-26  Score=153.11  Aligned_cols=134  Identities=19%  Similarity=0.312  Sum_probs=110.3

Q ss_pred             CCCCC-CCcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.+++ ...+.||++...  ..+..++  +.+.+|||+|++.+..++..++++++++++|||++++.+|+.+..|+.++.
T Consensus        22 l~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~  101 (164)
T d1z2aa1          22 YCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV  101 (164)
T ss_dssp             HHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             HHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhccccccccc
Confidence            34455 467889999864  4444555  899999999999999999999999999999999999999999999999886


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +..  +++|+++|+||+|+.+  .++.+++.+....                 .++++++|||++|.|++++|++|++.+
T Consensus       102 ~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         102 AEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRFYRTSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             HHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             ccC--CCceEEEeeccCCcccceeeeehhhHHHHHH-----------------cCCEEEEeccCCCcCHHHHHHHHHHHH
Confidence            532  4789999999999865  4566666665544                 346899999999999999999998753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5e-26  Score=152.35  Aligned_cols=136  Identities=17%  Similarity=0.192  Sum_probs=109.7

Q ss_pred             CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.+++ ...+.||++.. ......++  +.+.+||++|++.+...+..++++||++++|||+++++++..+..|+..+..
T Consensus        22 ~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~  101 (171)
T d2erxa1          22 FVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE  101 (171)
T ss_dssp             HHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             HHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhh
Confidence            34455 45788999986 44455666  7899999999999999999999999999999999999999999888877754


Q ss_pred             C-CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 D-DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~-~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . ....++|+++|+||+|+..  .++.+++.+....                 .++++++|||++|.||+++|+.|.+.+
T Consensus       102 ~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~-----------------~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         102 IKGDVESIPIMLVGNKCDESPSREVQSSEAEALART-----------------WKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             HHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             hhccCCCCcEEEEeecccccccccccHHHHHHHHHH-----------------cCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            2 2346789999999999865  4566666665554                 346899999999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.9e-26  Score=151.77  Aligned_cols=133  Identities=17%  Similarity=0.212  Sum_probs=108.0

Q ss_pred             CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      ++++ ..+.||.+..  ...+.+++  +++.+|||||++.+..+++.++++++++++|+|++++.++.....|+..+.+.
T Consensus        27 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~  106 (171)
T d2ew1a1          27 QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY  106 (171)
T ss_dssp             HSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc
Confidence            4443 4667777764  56667766  78999999999999999999999999999999999999999998888887643


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                       .....|+++|+||+|+.+  .+..+++......                 .++++++|||++|.||+++|.+|++.+
T Consensus       107 -~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~SAktg~gV~e~f~~l~~~l  166 (171)
T d2ew1a1         107 -ASNKVITVLVGNKIDLAERREVSQQRAEEFSEA-----------------QDMYYLETSAKESDNVEKLFLDLACRL  166 (171)
T ss_dssp             -SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -ccccccEEEEEeecccccccchhhhHHHHHHHh-----------------CCCEEEEEccCCCCCHHHHHHHHHHHH
Confidence             235689999999999875  4556666665544                 345799999999999999999988653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-26  Score=153.37  Aligned_cols=135  Identities=19%  Similarity=0.296  Sum_probs=104.3

Q ss_pred             CCCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.++. .+.+.||.+..  ...+..++  +.+.+||++|+..+..+++.+++++|++++|||++++++|+.+..|+..+.
T Consensus        23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~  102 (167)
T d1z08a1          23 YCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR  102 (167)
T ss_dssp             HHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcc
Confidence            34455 45788999986  34445555  899999999999999999999999999999999999999999999988765


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. .....|+++|+||+|+..  .++.+++......                 .++++++|||++|.||+++|++|++.+
T Consensus       103 ~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~-----------------~~~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         103 KM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             HH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cc-cccccceeeeccccccccccccchHHHHHHHHH-----------------cCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence            32 234679999999999876  5677777776655                 356899999999999999999999754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.4e-25  Score=149.69  Aligned_cols=136  Identities=17%  Similarity=0.202  Sum_probs=111.4

Q ss_pred             CCCCC-CCcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.+++ ...+.||.+....  .+..++  ..+.+||++|++.+..++..++++++++++|||++++++|+.+..|+....
T Consensus        24 l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  103 (167)
T d1z0ja1          24 FVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR  103 (167)
T ss_dssp             HHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhh
Confidence            34455 4577899998743  344444  788999999999999999999999999999999999999999999987775


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ...+.|+++|+||+|+.+  .+..+++.+....                 .++.+++|||++|.||+++|.+|++.|
T Consensus       104 ~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         104 QH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             hc-cCCcceEEEecccchhccccchhHHHHHHHHHH-----------------cCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            43 346789999999999975  4566666665554                 346899999999999999999999988


Q ss_pred             C
Q psy2161         155 D  155 (155)
Q Consensus       155 ~  155 (155)
                      +
T Consensus       166 ~  166 (167)
T d1z0ja1         166 P  166 (167)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9e-26  Score=152.00  Aligned_cols=134  Identities=16%  Similarity=0.290  Sum_probs=102.0

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++. ...+.||++.. ......++  +.+.+||++|++.+...++.|++++|++++|||++++.+|+.+..|+......
T Consensus        23 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  102 (177)
T d1kmqa_          23 SKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH  102 (177)
T ss_dssp             HHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             HhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            3455 35678998865 44555655  78999999999999999999999999999999999999999887666555543


Q ss_pred             CCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          79 DALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      . .++.|+++|+||+|+.+.              ++.++.......                ...++|++|||++|.||+
T Consensus       103 ~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~----------------~~~~~~~E~SAkt~~gi~  165 (177)
T d1kmqa_         103 F-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR----------------IGAFGYMECSAKTKDGVR  165 (177)
T ss_dssp             H-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHH----------------TTCSEEEECCTTTCTTHH
T ss_pred             h-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHH----------------cCCcEEEEecCCCCcCHH
Confidence            3 257899999999998642              122222222211                123589999999999999


Q ss_pred             HHHHHHHhh
Q psy2161         145 NGFRWLANY  153 (155)
Q Consensus       145 ~~~~~l~~~  153 (155)
                      ++|+.+++.
T Consensus       166 e~F~~i~~~  174 (177)
T d1kmqa_         166 EVFEMATRA  174 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=150.99  Aligned_cols=136  Identities=16%  Similarity=0.276  Sum_probs=110.7

Q ss_pred             CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.+++ ...+.||.+.. ...+.+++  +.+.+||++|+..+...+..+++++|++++|+|.+++.+|+.+..|+..+++
T Consensus        25 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  104 (171)
T d2erya1          25 FIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILR  104 (171)
T ss_dssp             HHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHh
Confidence            34455 45788999875 66667776  7999999999999999999999999999999999999999999999988876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .......|+++|+||+|+..  .++.+++.+....                 .++++++|||++|.||+++|++|++.+
T Consensus       105 ~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         105 VKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQ-----------------LKVTYMEASAKIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             HHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcccCCCCEEEEEeccchhhhccchHHHHHHHHHH-----------------cCCEEEEEcCCCCcCHHHHHHHHHHHH
Confidence            55556789999999999865  4677777766655                 346899999999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-26  Score=152.14  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=111.2

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .+++ ...+.||++.. ...+..++  +++.+||++|++.+...+..++++|+++++|||++++.+|..+..|+..+...
T Consensus        24 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~  103 (167)
T d1kaoa_          24 VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV  103 (167)
T ss_dssp             HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhh
Confidence            3455 45778998865 45556666  89999999999999999999999999999999999999999999999888765


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....+.|++||+||+|+.+  .....+.......                 .++++++|||++|.|++++|++++++|
T Consensus       104 ~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-----------------WGCPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             TTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEEccchhhcccchHHHHHHHHHH-----------------cCCeEEEECCCCCcCHHHHHHHHHHHH
Confidence            5556899999999999875  4555555554443                 345799999999999999999999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7e-26  Score=153.66  Aligned_cols=136  Identities=20%  Similarity=0.314  Sum_probs=102.9

Q ss_pred             CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      +.+++ ...+.||++.. ...+..++  +++.+||++|++.+...+..+++++|++++|||++++++|+....|+...++
T Consensus        29 ~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~  108 (185)
T d2atxa1          29 YANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK  108 (185)
T ss_dssp             HHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             HhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHH
Confidence            34455 45788999875 44455555  8999999999999999999999999999999999999999887665555544


Q ss_pred             CCCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCCh
Q psy2161          78 DDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGF  143 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  143 (155)
                      .. ..+.|+++|+||+|+.+.              ++.++..+....              .  ..+.|++|||++|.||
T Consensus       109 ~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~--------------~--~~~~~~E~SAk~~~gv  171 (185)
T d2atxa1         109 EY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE--------------I--GACCYVECSALTQKGL  171 (185)
T ss_dssp             HH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH--------------H--TCSCEEECCTTTCTTH
T ss_pred             hc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHH--------------c--CCCEEEEecCCCCcCH
Confidence            32 357899999999998652              222232222211              1  2357899999999999


Q ss_pred             HHHHHHHHhhc
Q psy2161         144 GNGFRWLANYI  154 (155)
Q Consensus       144 ~~~~~~l~~~i  154 (155)
                      +++|+.+.+.+
T Consensus       172 ~e~F~~li~~i  182 (185)
T d2atxa1         172 KTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-25  Score=148.06  Aligned_cols=134  Identities=18%  Similarity=0.245  Sum_probs=108.8

Q ss_pred             CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .+++ ...+.||.+..  ...+..++  +++.+||+||++.+..++..+++++|++++|+|+++.+++.....|+..+.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~  104 (166)
T d1z0fa1          25 TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN  104 (166)
T ss_dssp             HHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHh
Confidence            3445 34566777775  45556666  7999999999999999999999999999999999999999999888887754


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . .....|+++++||+|+..  ....+++......                 .++.+++|||++|.||+++|+++++.|
T Consensus       105 ~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         105 L-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             H-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             h-ccccceEEEEcccccchhhcccHHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3 345789999999999865  4555666665554                 346899999999999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-25  Score=151.81  Aligned_cols=112  Identities=20%  Similarity=0.299  Sum_probs=98.2

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC--cCCHHH
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDE  103 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~  103 (155)
                      +++++|||+|++.++.+++.++++||++|+|||++++.+++.+..|+.++.........|+++|+||+|+.+  .++.++
T Consensus        64 ~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e  143 (186)
T d2f7sa1          64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ  143 (186)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHH
Confidence            689999999999999999999999999999999999999999999998887666667789999999999976  466666


Q ss_pred             HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         104 VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+....                 .++++++|||++|.|++++|++|.+.+
T Consensus       144 ~~~~~~~-----------------~~~~~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         144 ARELADK-----------------YGIPYFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             HHHHHHH-----------------TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6666554                 346799999999999999999998753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.4e-25  Score=147.26  Aligned_cols=136  Identities=16%  Similarity=0.238  Sum_probs=111.3

Q ss_pred             CCCCC-CCcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.+++ ...+.||.+....  .+..++  +.+.+||++|++.+..+++.++++++++++|+|.++..+++....|+..+.
T Consensus        26 l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  105 (170)
T d1r2qa_          26 FVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ  105 (170)
T ss_dssp             HHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhh
Confidence            34455 4577899998744  344444  889999999999999999999999999999999999999999988888876


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +. ..++.|+++|+||+|+.+  .++.+++.+....                 ..+.+++|||++|.||+++|++|++.|
T Consensus       106 ~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~-----------------~~~~~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         106 RQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             hc-cCCCceEEeecccccccccccccHHHHHHHHHh-----------------cCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            43 335799999999999876  4566666665554                 346899999999999999999999876


Q ss_pred             C
Q psy2161         155 D  155 (155)
Q Consensus       155 ~  155 (155)
                      .
T Consensus       168 ~  168 (170)
T d1r2qa_         168 P  168 (170)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-25  Score=149.00  Aligned_cols=134  Identities=19%  Similarity=0.236  Sum_probs=106.0

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++. ...+.||++.. ...+..++  +++++||++|+..+. ....++++|+++++|||++++.+|..+..|.......
T Consensus        23 ~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~  101 (168)
T d2atva1          23 LTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI  101 (168)
T ss_dssp             HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             HhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhccccccc
Confidence            3455 46789999986 44445555  899999999998775 4667889999999999999999999988776655433


Q ss_pred             CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC-ChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ-GFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~i  154 (155)
                      ....+.|+++|+||+|+..  .++.+++.+....                 .++.+++|||++|. ||+++|..|++.+
T Consensus       102 ~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~~~e~Saktg~gnV~e~F~~l~~~i  163 (168)
T d2atva1         102 KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAFYECSACTGEGNITEIFYELCREV  163 (168)
T ss_dssp             HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred             ccccCcceeeeccchhhhhhccCcHHHHHHHHHH-----------------hCCeEEEEccccCCcCHHHHHHHHHHHH
Confidence            4446799999999999975  4677777666554                 34689999999998 5999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7e-25  Score=146.62  Aligned_cols=136  Identities=17%  Similarity=0.312  Sum_probs=112.2

Q ss_pred             CCCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.+++ ...+.||.|.+  ...+..++  +.+.+||++|++.+...++.+++++|++++|||++++.+|+.+..|+....
T Consensus        23 ~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  102 (170)
T d1ek0a_          23 FVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH  102 (170)
T ss_dssp             HHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhc
Confidence            34556 45678999975  45677766  899999999999999999999999999999999999999999998887765


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC-----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          77 ADDALTDVPILILGNKIDIFD-----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .. .....|+++++||+|+.+     .++.++..+....                 .++++++|||++|.||+++|++|+
T Consensus       103 ~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~gV~e~F~~i~  164 (170)
T d1ek0a_         103 EQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEE-----------------KGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             HH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc-cccccceeeeecccccccccchhhhhHHHHHHHHHH-----------------cCCEEEEecCCCCcCHHHHHHHHH
Confidence            43 335789999999999854     3455666655544                 457899999999999999999999


Q ss_pred             hhcC
Q psy2161         152 NYID  155 (155)
Q Consensus       152 ~~i~  155 (155)
                      +.|+
T Consensus       165 ~~i~  168 (170)
T d1ek0a_         165 EKIP  168 (170)
T ss_dssp             TTSC
T ss_pred             HHhc
Confidence            9875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3e-25  Score=148.93  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=92.3

Q ss_pred             CCCCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           1 MLKNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         1 ~l~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      ||.+++ ...+.||++..  ...+..++  +.+++|||||++.+..++..+++++|++|+|||++++.++..+..|+..+
T Consensus        25 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~  104 (173)
T d2fu5c1          25 RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI  104 (173)
T ss_dssp             ---------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHh
Confidence            355555 35677888865  56677776  78899999999999999999999999999999999999999998888887


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ... ...+.|+++|+||.|+..  .....++......                 .++.+++|||++|.|++++|++|++.
T Consensus       105 ~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~g~gv~e~f~~l~~~  166 (173)
T d2fu5c1         105 EEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALD-----------------YGIKFMETSAKANINVENAFFTLARD  166 (173)
T ss_dssp             HHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----------------HTCEEEECCC---CCHHHHHHHHHHH
T ss_pred             hhh-ccCCceEEEEEecccchhhcccHHHHHHHHHHh-----------------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            543 346789999999999876  3344444444433                 45689999999999999999999876


Q ss_pred             c
Q psy2161         154 I  154 (155)
Q Consensus       154 i  154 (155)
                      |
T Consensus       167 i  167 (173)
T d2fu5c1         167 I  167 (173)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-25  Score=146.82  Aligned_cols=136  Identities=16%  Similarity=0.273  Sum_probs=111.5

Q ss_pred             CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      |+++++ ..+.||.+.. ...+..++  +.+.+||++|++.+...+..++++++++++|+|++++.+|+.+..|+..+.+
T Consensus        23 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~  102 (166)
T d1ctqa_          23 LIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR  102 (166)
T ss_dssp             HHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHH
Confidence            344553 4678898876 33444555  8899999999999999999999999999999999999999999999998876


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .....++|+++|+||+|+.. ....+++.+....                 .++++++|||++|.||+++|.++++.|
T Consensus       103 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         103 VKDSDDVPMVLVGNKCDLAARTVESRQAQDLARS-----------------YGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             HHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEecccccccccccHHHHHHHHHH-----------------hCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            55556799999999999876 4556666555544                 345799999999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=145.29  Aligned_cols=134  Identities=17%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             CCCC-CCcccCCCCCceeE--EEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~~~~--~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .+++ ...+.||.+.....  +..++  ..+.+|||||++++..+++.++++++++++|+|.++++++..+..|+..+..
T Consensus        26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  105 (174)
T d2bmea1          26 IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM  105 (174)
T ss_dssp             HHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccc
Confidence            3445 45677888886443  33444  7899999999999999999999999999999999999999999989888765


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ..++|+++|+||+|+..  .............                 .++++++|||++|.|++++|+++.+.+
T Consensus       106 ~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         106 LA-SQNIVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             HS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cc-CCceEEEEEEecccccchhchhhhHHHHHHHh-----------------CCCEEEEeeCCCCcCHHHHHHHHHHHH
Confidence            43 35799999999999865  3444444444333                 356899999999999999999988753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-24  Score=145.20  Aligned_cols=136  Identities=18%  Similarity=0.270  Sum_probs=112.0

Q ss_pred             CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      |.++++ ..+.|+.+..  ...+.+++  +++.+|||||++.+..+++.+++++|++++|+|++++.++..+..|+.++.
T Consensus        27 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~  106 (177)
T d1x3sa1          27 FTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE  106 (177)
T ss_dssp             HHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHT
T ss_pred             HHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhc
Confidence            344553 4666777664  45566765  789999999999999999999999999999999999999999999999987


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.......|+++++||.|... .+...++.+....                 .++.+++|||++|.|++++|+++++.+
T Consensus       107 ~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~tg~gv~e~f~~l~~~l  168 (177)
T d1x3sa1         107 TYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFIEASAKTCDGVQCAFEELVEKI  168 (177)
T ss_dssp             TCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccceeeEEEeeccccccccccHHHHHHHHHH-----------------CCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            666566789999999999866 5666666665554                 456899999999999999999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=138.13  Aligned_cols=140  Identities=31%  Similarity=0.569  Sum_probs=117.8

Q ss_pred             CCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           3 KNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         3 ~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      .++++....++........+...+++.+||++|...+...+..+++.++++++++|.+++.++..+..|+.+++......
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  100 (160)
T d1r8sa_          21 KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR  100 (160)
T ss_dssp             HHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             hcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhccc
Confidence            34555556666666677777778999999999999999999999999999999999999999999999998888777677


Q ss_pred             CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .+|+++++||.|+.+.....++......            .......+++++|||++|.|++++|+||.++|
T Consensus       101 ~~~i~~v~~k~d~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         101 DAVLLVFANKQDLPNAMNAAEITDKLGL------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             TCEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             CceEEEEeecccccccccHHHHHHHHHH------------HHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            8999999999999887777777665544            12344678999999999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=144.17  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=100.0

Q ss_pred             CCCCC--CcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           3 KNDRT--AQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         3 ~~~~~--~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      .++++  ..+.||.+.+..  .+..++  +++++|||||++.+..++..+++++|++++|+|++++.++..+..|+..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  106 (170)
T d2g6ba1          27 KDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH  106 (170)
T ss_dssp             HHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             HhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhh
Confidence            34553  344677777644  455566  789999999999999999999999999999999999999999988887776


Q ss_pred             hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... ....|+++|+||+|+.+  .++.+++......                 .++++++|||++|.||+++|++|++.|
T Consensus       107 ~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         107 EYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKE-----------------YGLPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             HHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcc-CCCceEEEEEeeechhhcccccHHHHHHHHHH-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHc
Confidence            443 34689999999999876  4556666655544                 346899999999999999999999865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.2e-24  Score=145.80  Aligned_cols=134  Identities=21%  Similarity=0.326  Sum_probs=108.6

Q ss_pred             CCCC-CCcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++. ...+.||.+...  ..+.+++  +.+.+|||||++.+..+|..++++|+++|+|+|++++.++.....|+..+.+
T Consensus        27 ~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~  106 (194)
T d2bcgy1          27 SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR  106 (194)
T ss_dssp             HHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             hhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhh
Confidence            3344 567889999874  4566665  8999999999999999999999999999999999999999998888777754


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      . ...+.|+++|+||+|+.+  ....++.......                 .++.+++|||++|.||+++|+++.+.+
T Consensus       107 ~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~SAk~g~gi~e~f~~l~~~i  167 (194)
T d2bcgy1         107 Y-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMPFLETSALDSTNVEDAFLTMARQI  167 (194)
T ss_dssp             H-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             c-ccCCceEEEEEeccccccccchhHHHHhhhhhc-----------------cCcceEEEecCcCccHHHHHHHHHHHH
Confidence            3 346789999999999976  4455555554443                 346799999999999999999998754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=147.66  Aligned_cols=134  Identities=17%  Similarity=0.323  Sum_probs=102.7

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .++. ...+.||++.. ......++  +++.+||++|++.+...+..+++++|++++|||++++++|+.+..|+......
T Consensus        24 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  103 (191)
T d2ngra_          24 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH  103 (191)
T ss_dssp             HHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             HhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhh
Confidence            3455 46788999976 34555555  79999999999999999999999999999999999999999997665555443


Q ss_pred             CCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          79 DALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      . ..+.|+++|+||+|+.+.              +..++..++...                ...+.+++|||++|.||+
T Consensus       104 ~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~e~SAk~~~~V~  166 (191)
T d2ngra_         104 H-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARD----------------LKAVKYVECSALTQKGLK  166 (191)
T ss_dssp             H-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----------------TTCSCEEECCTTTCTTHH
T ss_pred             c-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHH----------------cCCCeEEEEeCCCCcCHH
Confidence            2 357999999999998642              222222222211                123579999999999999


Q ss_pred             HHHHHHHhh
Q psy2161         145 NGFRWLANY  153 (155)
Q Consensus       145 ~~~~~l~~~  153 (155)
                      ++|+.+.+.
T Consensus       167 e~f~~l~~~  175 (191)
T d2ngra_         167 NVFDEAILA  175 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=144.14  Aligned_cols=134  Identities=17%  Similarity=0.291  Sum_probs=105.2

Q ss_pred             CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .++.+ ..+.|+.+..  ...+..++  +.+.+||++|++.+...+..++++++++++|||.+++.+|.....|+..+.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~  104 (175)
T d2f9la1          25 TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD  104 (175)
T ss_dssp             HHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHH
Confidence            34553 4667777765  56666776  7999999999999999999999999999999999999999999999988875


Q ss_pred             CCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ... .+.|+++|+||+|+.+.  ............                 .+..+++|||++|.|++++|+++.+.+
T Consensus       105 ~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         105 HAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSFIETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             HSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcC-CCCcEEEEEeeecccccccchHHHHHHhhcc-----------------cCceEEEEecCCCcCHHHHHHHHHHHH
Confidence            443 57899999999999762  333333333333                 346899999999999999999988753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=139.88  Aligned_cols=130  Identities=16%  Similarity=0.181  Sum_probs=100.8

Q ss_pred             CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhh-HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161           8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQA-RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT   82 (155)
Q Consensus         8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~-~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~   82 (155)
                      ....||.+..  ...+.+++  +.+.+||++|.... +.++..+++++|++|+|||++++.+++.+..|+..+.......
T Consensus        31 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~  110 (172)
T d2g3ya1          31 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE  110 (172)
T ss_dssp             CCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT
T ss_pred             cccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceeeeeecccccchhhhhhhhhhhhhhccccC
Confidence            4556777765  45666766  77899997754221 2367889999999999999999999999999999887655556


Q ss_pred             CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ++|+++|+||+|+.+  .++.++.......                 .++++++|||++|.|++++|++|++.+
T Consensus       111 ~~piilvgnK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~Sak~g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         111 DIPIILVGNKSDLVRCREVSVSEGRACAVV-----------------FDCKFIETSAAVQHNVKELFEGIVRQV  167 (172)
T ss_dssp             TSCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CceEEEEeccccccccccccHHHHHHHHHH-----------------cCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            899999999999876  4666666554444                 356899999999999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-23  Score=139.05  Aligned_cols=135  Identities=17%  Similarity=0.279  Sum_probs=106.4

Q ss_pred             CCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-
Q psy2161           4 NDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA-   77 (155)
Q Consensus         4 ~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~-   77 (155)
                      +++ ...+.||++..  ...+..++  +.+.+||++|+......+..++..++++++++|.+++.+++.+..|+.++.+ 
T Consensus        28 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~  107 (174)
T d1wmsa_          28 TNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY  107 (174)
T ss_dssp             HSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             hCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHH
Confidence            344 45688888876  44555565  7899999999999999999999999999999999999999999999877653 


Q ss_pred             --CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 --DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 --~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                        .....+.|+++|+||+|+.+ .++.+++.+.....                ..+++++|||++|.||+++|++|++.+
T Consensus       108 ~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~----------------~~~~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         108 ADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN----------------GDYPYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             HTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT----------------TCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hccccCCCceEEEeccccchhhccCcHHHHHHHHHHc----------------CCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence              33345789999999999976 56777776665431                245799999999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-24  Score=144.71  Aligned_cols=147  Identities=14%  Similarity=0.266  Sum_probs=102.1

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .+++ ...+.||++.. ...+..++  +++.+||++|++.+..++..+++++|++++|||++++.+|+.+..|+....+.
T Consensus        26 ~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~  105 (183)
T d1mh1a_          26 TTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH  105 (183)
T ss_dssp             HHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             HhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHH
Confidence            3455 56788999976 45566666  88999999999999999999999999999999999999999887655544433


Q ss_pred             CCCCCCcEEEEEeCCCcCCcC-CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          79 DALTDVPILILGNKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      . ..+.|++||+||+|+.+.. ...+....... ......+....  .....+.|++|||++|.||+++|+.+++.
T Consensus       106 ~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~a--~~~~~~~~~E~SAk~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         106 H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-PITYPQGLAMA--KEIGAVKYLECSALTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             H-STTSCEEEEEECHHHHTCHHHHHHHHHTTCC-CCCHHHHHHHH--HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             h-CCCCcEEEEeecccchhhhhhhhhhhhcccc-chhhHHHHHHH--HHcCCceEEEcCCCCCcCHHHHHHHHHHH
Confidence            2 3578999999999985421 11111111000 00000000000  01123689999999999999999999875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.2e-23  Score=140.96  Aligned_cols=135  Identities=22%  Similarity=0.307  Sum_probs=93.9

Q ss_pred             CCCC-CCcccCCCCCceeEEEE--CC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           3 KNDR-TAQHMPTLHPTSEELSM--GD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~~~~~~~--~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      .+++ ...+.||.+........  .+   ..+.+|||+|++.+...+..+++.++++++|+|.+++.+|..+..|+.++.
T Consensus        23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~  102 (175)
T d1ky3a_          23 VNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL  102 (175)
T ss_dssp             HHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             HcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhh
Confidence            3445 35678888886444433  22   789999999999999999999999999999999999999999999998876


Q ss_pred             hC---CCCCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161          77 AD---DALTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL  150 (155)
Q Consensus        77 ~~---~~~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  150 (155)
                      ..   ....++|+++|+||+|+.+   .++.+++.+.....                ..+++++|||++|.||+++|++|
T Consensus       103 ~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~----------------~~~~~~e~SA~~g~gv~e~f~~l  166 (175)
T d1ky3a_         103 VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL----------------GDIPLFLTSAKNAINVDTAFEEI  166 (175)
T ss_dssp             HHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT----------------TSCCEEEEBTTTTBSHHHHHHHH
T ss_pred             hhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHc----------------CCCeEEEEeCCCCcCHHHHHHHH
Confidence            42   2335789999999999875   24555555544331                23578999999999999999999


Q ss_pred             Hhh
Q psy2161         151 ANY  153 (155)
Q Consensus       151 ~~~  153 (155)
                      ++.
T Consensus       167 ~~~  169 (175)
T d1ky3a_         167 ARS  169 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.9e-24  Score=142.20  Aligned_cols=134  Identities=18%  Similarity=0.253  Sum_probs=104.0

Q ss_pred             CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .+++ ...+.|+.+..  ......++  +.+.+||++|++.+..+++.+++++|++++|+|++++.+|+.+..|+..+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~  103 (173)
T d2a5ja1          24 TDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ  103 (173)
T ss_dssp             HHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             hcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHH
Confidence            3444 45667777775  33344444  7999999999999999999999999999999999999999999999988865


Q ss_pred             CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ..++|++||+||+|+..  ....++.......                 .++.+++|||++|.||+++|.++.+.+
T Consensus       104 ~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~-----------------~~~~~~e~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         104 HS-SSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLIFMETSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             HS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             hC-CCCCeEEEEecCCchhhhhhhHHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            43 35789999999999865  4555555555544                 346899999999999999999998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.1e-23  Score=138.62  Aligned_cols=133  Identities=20%  Similarity=0.312  Sum_probs=106.8

Q ss_pred             CCCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL   75 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~   75 (155)
                      +.+++ ...+.||.+..  ...+.+.+  ..+.+||++|...+.. .++.|++++|++++|||++++++|+.+..|+.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i  101 (165)
T d1z06a1          22 FCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC  101 (165)
T ss_dssp             HHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             HHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHH
Confidence            33455 45677888775  34555554  8999999999887754 5788999999999999999999999999999998


Q ss_pred             HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc---CCChHHHHHHH
Q psy2161          76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK---RQGFGNGFRWL  150 (155)
Q Consensus        76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l  150 (155)
                      .+.....+.|+++|+||+|+.+  .++.+++.++...                 .++.+++|||++   +.||+++|++|
T Consensus       102 ~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         102 KQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-----------------HSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             HHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             HhhccCCCCeEEEEeccccchhccchhHHHHHHHHHH-----------------CCCEEEEEecccCCcCcCHHHHHHHh
Confidence            8766667899999999999876  4677777776655                 345799999997   55999999987


Q ss_pred             H
Q psy2161         151 A  151 (155)
Q Consensus       151 ~  151 (155)
                      +
T Consensus       165 A  165 (165)
T d1z06a1         165 A  165 (165)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.89  E-value=9.3e-23  Score=136.60  Aligned_cols=142  Identities=23%  Similarity=0.532  Sum_probs=119.9

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||.+++.....||.+.....+...+.++.+||++|++..+..+..+++.++++++++|.++..++.....+.........
T Consensus        34 rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~  113 (177)
T d1zj6a1          34 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED  113 (177)
T ss_dssp             HHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG
T ss_pred             HHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhccc
Confidence            35667788888999999899999999999999999999999999999999999999999999999888777777766666


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ..+.|+++|+||+|+.......++...+..            ......++++++|||++|+|++++++||.++|
T Consensus       114 ~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         114 LRKAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             GTTCEEEEEEECTTSTTCCCHHHHHHHHTG------------GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ccceEEEEEEEcccccccCcHHHHHHHHHH------------HhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            678999999999999887777777777765            23455778999999999999999999999876

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.2e-23  Score=142.35  Aligned_cols=136  Identities=18%  Similarity=0.282  Sum_probs=108.2

Q ss_pred             CCCCC-CCcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161           2 LKNDR-TAQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL   76 (155)
Q Consensus         2 l~~~~-~~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~   76 (155)
                      +.+|+ ...+.||++.+..  .+...+  +.+.+||++|+..+...+..++..|+++++|+|.+++.++..+..|+.++.
T Consensus        22 l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  101 (184)
T d1vg8a_          22 YVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL  101 (184)
T ss_dssp             HHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             HHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHH
Confidence            34455 5678899998744  444444  899999999999999999999999999999999999999999999988776


Q ss_pred             hC---CCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          77 AD---DALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        77 ~~---~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..   ....++|+++|+||+|+.+ ....++........                ..+++++|||++|.||+++|++|++
T Consensus       102 ~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sak~~~gI~e~f~~l~~  165 (184)
T d1vg8a_         102 IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK----------------NNIPYFETSAKEAINVEQAFQTIAR  165 (184)
T ss_dssp             HHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT----------------TSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHh----------------cCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            43   2234689999999999876 45555555544321                3468999999999999999999987


Q ss_pred             h
Q psy2161         153 Y  153 (155)
Q Consensus       153 ~  153 (155)
                      .
T Consensus       166 ~  166 (184)
T d1vg8a_         166 N  166 (184)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=1.7e-22  Score=135.72  Aligned_cols=155  Identities=63%  Similarity=1.103  Sum_probs=124.3

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||+++.+..+.||.+.+...+.+++..+.+||+.++..+...+..+++.++++++++|.++...+.....++........
T Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~  111 (186)
T d1f6ba_          32 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET  111 (186)
T ss_dssp             HHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             HHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccc
Confidence            46777888888999999999999999999999999999999999999999999999999999888888777766666666


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ..++|+++++||.|+.......++...+........+...........++.+++|||++|+|++|+|+||.++|+
T Consensus       112 ~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i~  186 (186)
T d1f6ba_         112 IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID  186 (186)
T ss_dssp             GTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             cCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhhC
Confidence            678999999999999888888888888877655544444455556667889999999999999999999999885

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-24  Score=142.61  Aligned_cols=134  Identities=17%  Similarity=0.266  Sum_probs=102.7

Q ss_pred             CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161           3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA   77 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~   77 (155)
                      .+++ ...+.||.+..  ...+.+++  +++.+|||||++.+..++..++++++++++|||.+++++++.+..|......
T Consensus        23 ~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  102 (166)
T d1g16a_          23 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE  102 (166)
T ss_dssp             HHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             HhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhc
Confidence            3445 45678999886  45666665  7899999999999999999999999999999999999999998887776654


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .. ....|++++++|.|+.. ....+++.+....                 .++++++|||++|.|++++|++|++.+
T Consensus       103 ~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~e~f~~l~~~i  162 (166)
T d1g16a_         103 HA-NDEAQLLLVGNKSDMETRVVTADQGEALAKE-----------------LGIPFIESSAKNDDNVNEIFFTLAKLI  162 (166)
T ss_dssp             HS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cc-cCcceeeeecchhhhhhhhhhHHHHHHHHHh-----------------cCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence            33 35679999999999876 4556666555544                 356899999999999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.9e-24  Score=143.80  Aligned_cols=134  Identities=16%  Similarity=0.221  Sum_probs=102.0

Q ss_pred             CCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161           3 KNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD   78 (155)
Q Consensus         3 ~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~   78 (155)
                      .+++ ...+.||++.. ...+..++  +.+.+||++|++.+...++.+++++|++++|||++++++|+.+..|+...+..
T Consensus        23 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  102 (179)
T d1m7ba_          23 AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE  102 (179)
T ss_dssp             HHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             HhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc
Confidence            4455 45788998864 55556655  89999999999999999999999999999999999999999887666555433


Q ss_pred             CCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC-h
Q psy2161          79 DALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG-F  143 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i  143 (155)
                      . ..+.|+++|+||+|+...              ++.++.......              .  ....|++|||++|.| +
T Consensus       103 ~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~--------------~--~~~~y~E~SAk~~~n~i  165 (179)
T d1m7ba_         103 F-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ--------------I--GAATYIECSALQSENSV  165 (179)
T ss_dssp             H-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH--------------H--TCSEEEECBTTTBHHHH
T ss_pred             c-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHH--------------h--CCCeEEEEeCCCCCcCH
Confidence            2 247899999999998642              233333332221              0  235799999999985 9


Q ss_pred             HHHHHHHHhh
Q psy2161         144 GNGFRWLANY  153 (155)
Q Consensus       144 ~~~~~~l~~~  153 (155)
                      +++|+.+.+.
T Consensus       166 ~~~F~~~~~~  175 (179)
T d1m7ba_         166 RDIFHVATLA  175 (179)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.8e-23  Score=137.17  Aligned_cols=132  Identities=12%  Similarity=0.168  Sum_probs=101.5

Q ss_pred             CCCCCCCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-
Q psy2161           2 LKNDRTAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA-   77 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~-   77 (155)
                      +.++++..+.||.+.. ...+..++  +.+.+|||+|+..+.     |+++||++|+|||++++.+|+.+..|...+.. 
T Consensus        25 ~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~   99 (175)
T d2bmja1          25 FLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL   99 (175)
T ss_dssp             HHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHH
Confidence            3456677778888775 55677777  889999999988653     67889999999999999999999888877643 


Q ss_pred             -CCCCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161          78 -DDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus        78 -~~~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                       .....+.|+++|+||.|+..    .++..++......                ..++.|++|||++|.|++++|..+++
T Consensus       100 ~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~----------------~~~~~~~e~SAk~~~~v~~~F~~l~~  163 (175)
T d2bmja1         100 RGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD----------------MKRCSYYETCATYGLNVDRVFQEVAQ  163 (175)
T ss_dssp             CC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT----------------STTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             hhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH----------------hCCCeEEEeCCCCCcCHHHHHHHHHH
Confidence             23345689999999998743    3455555554322                14578999999999999999999887


Q ss_pred             hc
Q psy2161         153 YI  154 (155)
Q Consensus       153 ~i  154 (155)
                      .+
T Consensus       164 ~i  165 (175)
T d2bmja1         164 KV  165 (175)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1e-21  Score=129.32  Aligned_cols=148  Identities=57%  Similarity=0.975  Sum_probs=123.6

Q ss_pred             CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161           1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA   80 (155)
Q Consensus         1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~   80 (155)
                      ||+++.+..+.||.+.+...+.+.+..+.+||++|...+...+..+++.++++++++|.++..++.....++........
T Consensus        19 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   98 (166)
T d2qtvb1          19 MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE   98 (166)
T ss_dssp             HHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTT
T ss_pred             HHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhc
Confidence            35667788899999999999999999999999999999999999999999999999999999999888888887777777


Q ss_pred             CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..+.|+++++||.|+.......++.+.+.......     .........+.+++|||++|+|++|+|+||.+.
T Consensus        99 ~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~  166 (166)
T d2qtvb1          99 LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG-----SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  166 (166)
T ss_dssp             TTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC--------CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred             cCCceEEEEeccccccccCCHHHHHHHhhhhhhhH-----HHhhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence            78899999999999988788888887776532110     001122356789999999999999999999863

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.3e-22  Score=136.05  Aligned_cols=152  Identities=17%  Similarity=0.270  Sum_probs=107.6

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC----------chHHHHHH
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS----------RFPESKYE   71 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~----------~~~~~~~~   71 (155)
                      ++.+.+ .+.||+|+....+...+..+++||++|++.++..|..++++++++++++|.++..          .+.+...+
T Consensus        22 ~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~  100 (200)
T d2bcjq2          22 MRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKAL  100 (200)
T ss_dssp             HHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred             HhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHH
Confidence            344555 5889999999999999999999999999999999999999999999999997643          33444556


Q ss_pred             HHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCccc----------ccccccCccEEEEEeeeccC
Q psy2161          72 LDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFT----------SREILQMRPIELFMCSVLKR  140 (155)
Q Consensus        72 l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~Sa~~~  140 (155)
                      +..++......+.|+++++||+|+.. .......................          .......+.+.+++|||++|
T Consensus       101 ~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~  180 (200)
T d2bcjq2         101 FRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT  180 (200)
T ss_dssp             HHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCH
T ss_pred             HHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcC
Confidence            66666666677899999999999754 11111111111111100000000          01112346788999999999


Q ss_pred             CChHHHHHHHHhhc
Q psy2161         141 QGFGNGFRWLANYI  154 (155)
Q Consensus       141 ~~i~~~~~~l~~~i  154 (155)
                      .|++++|+.+.+.|
T Consensus       181 ~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         181 ENIRFVFAAVKDTI  194 (200)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHH
Confidence            99999999987654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.84  E-value=7.2e-20  Score=120.91  Aligned_cols=141  Identities=28%  Similarity=0.548  Sum_probs=119.9

Q ss_pred             CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL   81 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~   81 (155)
                      |.++++..+.||.+.....+..+++.+.+||.+|...+...+..++..++++++++|+++..++.....++.........
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (169)
T d1upta_          25 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL  104 (169)
T ss_dssp             HHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGG
T ss_pred             HhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhcc
Confidence            45677788889999988888999999999999999999999999999999999999999988888887777766666566


Q ss_pred             CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ...|+++++||.|+.+.....++......            .......+++++|||++|.|++++|++|++.+
T Consensus       105 ~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         105 RKAILVVFANKQDMEQAMTSSEMANSLGL------------PALKDRKWQIFKTSATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHHTG------------GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccceEEEEEeeccccccccHHHHHHHHHH------------HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            78899999999999887777777665543            12445678999999999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.8e-21  Score=131.62  Aligned_cols=146  Identities=18%  Similarity=0.349  Sum_probs=98.9

Q ss_pred             CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCc----------hHHHHHHHHHHHh
Q psy2161           8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR----------FPESKYELDSLLA   77 (155)
Q Consensus         8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~----------~~~~~~~l~~~~~   77 (155)
                      ..+.||+|+....+..++.++++||++|++.++..|..++++++++++++|.++...          +.....++..+++
T Consensus        26 ~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (200)
T d1zcba2          26 HGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  105 (200)
T ss_dssp             HSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             CCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhh
Confidence            457899999999999999999999999999999999999999999999999987433          4566778888887


Q ss_pred             CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcc-----------cccccccCccEEEEEeeeccCCChHH
Q psy2161          78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEF-----------TSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      .....+.|++|++||+|+.+ ......+...+..+...+....           ........+.+.++++||+++.||++
T Consensus       106 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~  185 (200)
T d1zcba2         106 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  185 (200)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             ChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHH
Confidence            77778899999999999754 1111112222221111110000           00111123456788999999999999


Q ss_pred             HHHHHHhh
Q psy2161         146 GFRWLANY  153 (155)
Q Consensus       146 ~~~~l~~~  153 (155)
                      +|+.+.+.
T Consensus       186 vf~~v~d~  193 (200)
T d1zcba2         186 VFRDVKDT  193 (200)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=7.3e-21  Score=128.78  Aligned_cols=145  Identities=21%  Similarity=0.297  Sum_probs=101.6

Q ss_pred             ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCch----------HHHHHHHHHHHhCC
Q psy2161          10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF----------PESKYELDSLLADD   79 (155)
Q Consensus        10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~----------~~~~~~l~~~~~~~   79 (155)
                      ..||.|+....++..+.++++||++|++.++..|..|+++++++++|+|.++..++          .+...++..++...
T Consensus        26 ~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~  105 (195)
T d1svsa1          26 HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK  105 (195)
T ss_dssp             HSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG
T ss_pred             CCCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccc
Confidence            46899998888999999999999999999999999999999999999999876554          23445566666666


Q ss_pred             CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCC----------CcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161          80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTG----------KEFTSREILQMRPIELFMCSVLKRQGFGNGFR  148 (155)
Q Consensus        80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  148 (155)
                      ...+.|+++++||+|+.. ..........+........          +..........+.+.+++|||++|.||+++|+
T Consensus       106 ~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~  185 (195)
T d1svsa1         106 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD  185 (195)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHH
Confidence            667899999999999643 1110000000000000000          00000111234678899999999999999999


Q ss_pred             HHHhhc
Q psy2161         149 WLANYI  154 (155)
Q Consensus       149 ~l~~~i  154 (155)
                      .+.+.|
T Consensus       186 ~v~~~i  191 (195)
T d1svsa1         186 AVTDVI  191 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=3.2e-19  Score=123.70  Aligned_cols=144  Identities=17%  Similarity=0.263  Sum_probs=105.8

Q ss_pred             cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC----------CchHHHHHHHHHHHhC
Q psy2161           9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR----------SRFPESKYELDSLLAD   78 (155)
Q Consensus         9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~----------~~~~~~~~~l~~~~~~   78 (155)
                      .+.||+|+....+.++++++++||++|++.++..|.+++++++++++|+|.++.          .++.+...++..++++
T Consensus        30 ~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~  109 (221)
T d1azta2          30 HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  109 (221)
T ss_dssp             HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcC
Confidence            456999999999999999999999999999999999999999999999998752          3455667778888888


Q ss_pred             CCCCCCcEEEEEeCCCcCCc---CCHHHHHhhhcccCccCC-------Ccc------------ccccc------ccCccE
Q psy2161          79 DALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTG-------KEF------------TSREI------LQMRPI  130 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~-------~~~------------~~~~~------~~~~~~  130 (155)
                      ....+.|++|++||+|+.+.   .+...+...+..+.....       .+.            ..+.+      ...+.+
T Consensus       110 ~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~  189 (221)
T d1azta2         110 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  189 (221)
T ss_dssp             GGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCE
T ss_pred             hhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCce
Confidence            77788999999999998641   111223333333221100       000            00001      112457


Q ss_pred             EEEEeeeccCCChHHHHHHHHh
Q psy2161         131 ELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       131 ~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ..+++||+++.|+..+|..+.+
T Consensus       190 y~h~T~A~Dt~ni~~vf~~v~d  211 (221)
T d1azta2         190 YPHFTCAVDTENIRRVFNDCRD  211 (221)
T ss_dssp             EEEECCTTCHHHHHHHHHTTHH
T ss_pred             eeeecceeccHHHHHHHHHHHH
Confidence            7889999999999999987654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2.3e-17  Score=110.41  Aligned_cols=121  Identities=19%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             CCceeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161          15 HPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        15 ~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      ..........+.++.+|||||...        +......++++||++++|+|++++....  ..++.+.++.. ..++|+
T Consensus        42 ~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~-~~~~pi  118 (178)
T d1wf3a1          42 KRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPI  118 (178)
T ss_dssp             SCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCE
T ss_pred             ccccceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhccc--ccchhhheecc-ccchhh
Confidence            334566677889999999999632        3344456688999999999998764432  33444444322 246899


Q ss_pred             EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ++|+||+|+...  .++..+.....               .....++++||++|.|++++++++.+.+|
T Consensus       119 ilv~NK~Dl~~~--~~~~~~~~~~~---------------~~~~~~~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         119 LLVGNKLDAAKY--PEEAMKAYHEL---------------LPEAEPRMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             EEEEECGGGCSS--HHHHHHHHHHT---------------STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhhcccccccC--HHHHHHHHHhh---------------cccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            999999998642  22222222210               01246788999999999999999998874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=6.5e-17  Score=110.55  Aligned_cols=152  Identities=21%  Similarity=0.222  Sum_probs=101.9

Q ss_pred             CCCCCCCcccCCCCCceeEEEEC---CEEEEEEEcCCChhhH-HhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHH
Q psy2161           2 LKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSLL   76 (155)
Q Consensus         2 l~~~~~~~~~pT~~~~~~~~~~~---~~~~~~~Dt~G~~~~~-~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~   76 (155)
                      |.++++....||.+.+...+.+.   ++.+.+||++|++.++ ..+..+++.++++++|+|+++..++ .....++..++
T Consensus        20 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l   99 (207)
T d2fh5b1          20 LLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVL   99 (207)
T ss_dssp             HHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHH
Confidence            45667777889999988777763   4899999999999885 5788999999999999999986553 44455555544


Q ss_pred             hC--CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc----------Ccc------------CCCcccccccccCccEEE
Q psy2161          77 AD--DALTDVPILILGNKIDIFDAASEDEVRHFFGLY----------GLT------------TGKEFTSREILQMRPIEL  132 (155)
Q Consensus        77 ~~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~----------~~~------------~~~~~~~~~~~~~~~~~~  132 (155)
                      ..  .....+|+++|+||+|+.+..+.+++.+.++..          ...            ...............+.+
T Consensus       100 ~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  179 (207)
T d2fh5b1         100 IDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF  179 (207)
T ss_dssp             HHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEE
T ss_pred             HhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhhcccchhhhHHhccCCcEE
Confidence            21  223468999999999998877776665544311          000            000000011112245789


Q ss_pred             EEeeeccCCC------hHHHHHHHHhh
Q psy2161         133 FMCSVLKRQG------FGNGFRWLANY  153 (155)
Q Consensus       133 ~~~Sa~~~~~------i~~~~~~l~~~  153 (155)
                      +++|+++|.+      ++.+-+||.+.
T Consensus       180 ~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         180 LECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             EECBCC-------CCBCHHHHHHHHHH
T ss_pred             EEeeecCCCcccccccHHHHHHHHHHh
Confidence            9999999987      88899998753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=8.6e-16  Score=100.74  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=83.1

Q ss_pred             eeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      ...+...+..+.+||++|...        .......++..+|++++++|.++...+.....|...+....  .++|+++|
T Consensus        41 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv  118 (161)
T d2gj8a1          41 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVV  118 (161)
T ss_dssp             EEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEE
T ss_pred             eeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc--cccceeec
Confidence            556777889999999999532        12334566889999999999998877766655544443222  46899999


Q ss_pred             EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +||+|+.+...        ..              ......+++++||++|.|+++++++|.+.|
T Consensus       119 ~NK~Dl~~~~~--------~~--------------~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         119 RNKADITGETL--------GM--------------SEVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             EECHHHHCCCC--------EE--------------EEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             cchhhhhhhHH--------HH--------------HHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            99999854211        11              112456899999999999999999999865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=5.6e-15  Score=96.66  Aligned_cols=112  Identities=22%  Similarity=0.312  Sum_probs=83.2

Q ss_pred             ceeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL   87 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii   87 (155)
                      ....+..++..+.+|||||...         ........++.+|++++|+|++++........ ...+      ...+++
T Consensus        39 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~-~~~~------~~~~~i  111 (160)
T d1xzpa2          39 ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI------KNKRYL  111 (160)
T ss_dssp             CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEE
T ss_pred             eeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhh-hhhc------ccccce
Confidence            4667788899999999999321         11223334678999999999998766544322 2222      357899


Q ss_pred             EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161          88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus        88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      +++||+|+.+....+++...+..                  ..+++++||++|.|+++++++|.++
T Consensus       112 ~~~~k~d~~~~~~~~~~~~~~~~------------------~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         112 VVINKVDVVEKINEEEIKNKLGT------------------DRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEECSSCCCCCHHHHHHHHTC------------------STTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             eeeeeccccchhhhHHHHHHhCC------------------CCcEEEEECCCCCCHHHHHHHHHhc
Confidence            99999999887777777766654                  2358899999999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.62  E-value=1.3e-15  Score=101.97  Aligned_cols=121  Identities=12%  Similarity=0.120  Sum_probs=85.8

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF   96 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~   96 (155)
                      ....+..++..+.++|++|+..+.......+..+|++++|+|+++...... ...+..+. .   .++|+++|+||+|+.
T Consensus        50 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~-~---~~~p~iiv~NKiD~~  124 (179)
T d1wb1a4          50 GFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHMLILD-H---FNIPIIVVITKSDNA  124 (179)
T ss_dssp             CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHHHHHH-H---TTCCBCEEEECTTSS
T ss_pred             cccccccCCccccccccccccccccchhhhhhhccccccccccccccchhh-hhhhhhhh-h---cCCcceecccccccc
Confidence            356666788999999999999999999999999999999999987544322 22222222 1   368999999999986


Q ss_pred             CcCCHH---HHHhh-hcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          97 DAASED---EVRHF-FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        97 ~~~~~~---~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +.....   +..+. +..             .......+++++||++|.|++++++++.+.+|
T Consensus       125 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~  174 (179)
T d1wb1a4         125 GTEEIKRTEMIMKSILQS-------------THNLKNSSIIPISAKTGFGVDELKNLIITTLN  174 (179)
T ss_dssp             CHHHHHHHHHHHHHHHHH-------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-------------hhcCCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence            521111   11111 111             01224567899999999999999999987653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=3.2e-15  Score=99.07  Aligned_cols=120  Identities=14%  Similarity=0.163  Sum_probs=80.9

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      |.......+...+.++.+||++|.         ..+...+..++..||++++++|.+....... ..++..+..    .+
T Consensus        35 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~  109 (171)
T d1mkya1          35 TRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK----ST  109 (171)
T ss_dssp             --CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH----HT
T ss_pred             eeccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-ccccccccc----cc
Confidence            444456777888899999999983         2244456677889999999999876544432 333333322    25


Q ss_pred             CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +|+++|+||+|+.+....+...+....                 ....++++||++|.|+++++++|.+.+
T Consensus       110 ~pviiv~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~i~iSAk~g~gid~L~~~i~~~l  163 (171)
T d1mkya1         110 VDTILVANKAENLREFEREVKPELYSL-----------------GFGEPIPVSAEHNINLDTMLETIIKKL  163 (171)
T ss_dssp             CCEEEEEESCCSHHHHHHHTHHHHGGG-----------------SSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhHHHHHHHhc-----------------CCCCeEEEecCCCCCHHHHHHHHHHhC
Confidence            899999999998643222111111111                 123468899999999999999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.8e-15  Score=101.07  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=73.5

Q ss_pred             CCEEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161          24 GDIVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDR--SRFPESKYELDSLLADDALTDVPILILGNKID   94 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D   94 (155)
                      ++.++++|||||...       ........+..++++++++|....  ..+.....++....  ....++|+++|+||+|
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~NK~D  124 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYD--PALLRRPSLVALNKVD  124 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHC--HHHHHSCEEEEEECCT
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccc--cccchhhhhhhhhhhh
Confidence            458999999999432       112344557889999999998643  12222223332221  1123579999999999


Q ss_pred             cCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        95 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      +.+.....++.+.+..                 .+.+++.+||++|.|++++++.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~-----------------~~~~~~~iSA~tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         125 LLEEEAVKALADALAR-----------------EGLAVLPVSALTGAGLPALKEALHALV  167 (180)
T ss_dssp             TSCHHHHHHHHHHHHT-----------------TTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHh-----------------cCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            8653223333333332                 456799999999999999999987654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.59  E-value=4.2e-15  Score=100.71  Aligned_cols=114  Identities=17%  Similarity=0.203  Sum_probs=81.6

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC----C
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA----S  100 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~----~  100 (155)
                      +.++.++||||+..|.......+..+|++++|+|+.+..........+.....   ...++++++.||+|+.+..    .
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~---~~~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHH---hcCccceeeeecccchhhHHHHHH
Confidence            36799999999999999888889999999999999875333333322222211   1235688999999986521    1


Q ss_pred             HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ...+.+.+..              .....++++++||++|.|++++++.+.+.+|
T Consensus       154 ~~~~~~~~~~--------------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         154 YRQIKEFIEG--------------TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcc--------------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            2233333332              2234568999999999999999999999886

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=1.4e-14  Score=98.90  Aligned_cols=113  Identities=14%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----H
Q psy2161          26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----E  101 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~  101 (155)
                      .++++.||||+..|.......+..||++|+|+|+.+.-.-...+..+.... ..  ...|++++.||+|+.+...    .
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~-~~--~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALG-II--GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHH-Hc--CCceeeeccccCCCccchHHHHHH
Confidence            689999999999998888888999999999999987432222222222221 11  2358999999999965211    1


Q ss_pred             HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      ..+...+..              ....+++++++||++|.|++++++.+..++|
T Consensus       163 ~~~~~~l~~--------------~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         163 RQIKQFTKG--------------TWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhcc--------------ccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            122222222              2334678999999999999999999998875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=3.3e-15  Score=99.82  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             eEEEECCEEEEEEEcCCC---------------hhhHHhHHhhcCCCCEEEEEEECCCCCchH---------HH-HHHHH
Q psy2161          19 EELSMGDIVFTTHDLGGH---------------VQARRVWRDYFPAVDAIVFIIDASDRSRFP---------ES-KYELD   73 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~---------------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~---------~~-~~~l~   73 (155)
                      ..+...+  +++|||||.               ..+.......++.+|++++|+|++.+....         .. ...+.
T Consensus        38 ~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~  115 (184)
T d2cxxa1          38 IEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ  115 (184)
T ss_dssp             EEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             ccccccc--ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHH
Confidence            3344444  568999993               112233455677899999999986421110         01 12222


Q ss_pred             HHHhCCCCCCCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161          74 SLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA  151 (155)
Q Consensus        74 ~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  151 (155)
                      .+ ..   .++|+++|+||+|+....  ....+...++.             ........++++||++|.|++++++++.
T Consensus       116 ~l-~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~vSA~~g~gi~~L~~~i~  178 (184)
T d2cxxa1         116 FL-RE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-------------PLSEIDKVFIPISAKFGDNIERLKNRIF  178 (184)
T ss_dssp             HH-HH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-------------CGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred             HH-HH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-------------cccccCCeEEEEECCCCCCHHHHHHHHH
Confidence            22 21   368999999999975421  11112222221             0112233578999999999999999998


Q ss_pred             hhcC
Q psy2161         152 NYID  155 (155)
Q Consensus       152 ~~i~  155 (155)
                      +.++
T Consensus       179 ~~l~  182 (184)
T d2cxxa1         179 EVIR  182 (184)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            8763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=2e-14  Score=96.26  Aligned_cols=124  Identities=22%  Similarity=0.265  Sum_probs=78.7

Q ss_pred             CCCCCceeEEEEC-CEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHH--HHH--HHHHhC
Q psy2161          12 PTLHPTSEELSMG-DIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESK--YEL--DSLLAD   78 (155)
Q Consensus        12 pT~~~~~~~~~~~-~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~--~~l--~~~~~~   78 (155)
                      +|...+.....+. +..+.+|||||...        +.... ..+..++.++++++...........  .+.  ......
T Consensus        34 ~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l-~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  112 (185)
T d1lnza2          34 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFL-RHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN  112 (185)
T ss_dssp             SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHH-HHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred             ceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHH-HHHHHhhhhhheeeecccccchhhhhhhhhhhccchhh
Confidence            3555556666664 47899999999532        11222 3345789999999886544332221  111  122233


Q ss_pred             CCCCCCcEEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          79 DALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        79 ~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      ....++|+++|+||+|+.+... .+.+...+.                  .+.+++.+||++|.|++++++++.+.+
T Consensus       113 ~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------------------~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         113 LRLTERPQIIVANKMDMPEAAENLEAFKEKLT------------------DDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             SSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------------------SCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             hhccCCcchhhccccchHhHHHHHHHHHHHhc------------------cCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4455789999999999875311 122222221                  245789999999999999999998876

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.48  E-value=6.5e-14  Score=94.86  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=85.4

Q ss_pred             eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161          18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD   97 (155)
Q Consensus        18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~   97 (155)
                      ...+.+.+.++++.||||+..|.......++.+|++++|+|+++...- ..+..+.....   ...+|++++.||+|+.+
T Consensus        58 ~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~---~~~~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          58 HVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ---IGVEHVVVYVNKADAVQ  133 (196)
T ss_dssp             EEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCS
T ss_pred             eEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHH---hcCCcEEEEEecccccc
Confidence            456667789999999999999999998889999999999999875332 22333333321   13468999999999854


Q ss_pred             c-CCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC----------CChHHHHHHHHhhcC
Q psy2161          98 A-ASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR----------QGFGNGFRWLANYID  155 (155)
Q Consensus        98 ~-~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~i~~~~~~l~~~i~  155 (155)
                      . ...    .++...+...+            ......+++.+||++|          .|+.++++.+.+.+|
T Consensus       134 ~~~~~~~i~~~i~~~l~~~~------------~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         134 DSEMVELVELEIRELLTEFG------------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHHHHhC------------CCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            1 111    13333332211            2224567999999998          588999999888775

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.47  E-value=1.3e-13  Score=95.43  Aligned_cols=127  Identities=16%  Similarity=0.130  Sum_probs=79.1

Q ss_pred             EEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC-
Q psy2161          21 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA-   99 (155)
Q Consensus        21 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~-   99 (155)
                      +..++.++.++||||+..|.......+..||++|+|+|+.+.-.... ...+..+..    .++|+++|+||+|+.+.. 
T Consensus        65 ~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~  139 (227)
T d1g7sa4          65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWR  139 (227)
T ss_dssp             GGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCC
T ss_pred             ecccccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchh
Confidence            34566899999999999988887788899999999999976433322 233333322    368999999999986521 


Q ss_pred             --CHHHHHhhhcccCc-----------------c-CC--CcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         100 --SEDEVRHFFGLYGL-----------------T-TG--KEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       100 --~~~~i~~~~~~~~~-----------------~-~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                        ....+...+.....                 . ..  ..............+++++||++|.|++++++.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~  214 (227)
T d1g7sa4         140 VHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG  214 (227)
T ss_dssp             CCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence              11111111100000                 0 00  000000111223568999999999999999988764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=7.6e-13  Score=90.06  Aligned_cols=81  Identities=19%  Similarity=0.227  Sum_probs=61.7

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEE
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILG   90 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~   90 (155)
                      -|+......+.+++.+++++||||+..|.......++.||++|+|+|+++.-..+....| .....    .++| +++++
T Consensus        53 iTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~----~gi~~iiv~i  127 (204)
T d2c78a3          53 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ----VGVPYIVVFM  127 (204)
T ss_dssp             CCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH----TTCCCEEEEE
T ss_pred             eEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH----cCCCeEEEEE
Confidence            355555678888999999999999999999998999999999999999876544433333 33321    1444 78889


Q ss_pred             eCCCcCC
Q psy2161          91 NKIDIFD   97 (155)
Q Consensus        91 nK~Dl~~   97 (155)
                      ||+|+.+
T Consensus       128 NK~D~~~  134 (204)
T d2c78a3         128 NKVDMVD  134 (204)
T ss_dssp             ECGGGCC
T ss_pred             EecccCC
Confidence            9999864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.40  E-value=5.8e-12  Score=86.65  Aligned_cols=113  Identities=16%  Similarity=0.069  Sum_probs=76.2

Q ss_pred             CceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI   95 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl   95 (155)
                      .....+.+.+.++.+.|+||+..|..........+|++++|+|+.....-+. ...+... ...  .-+.++++.||+|+
T Consensus        79 ~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~-~~~--gv~~iiv~vNK~D~  154 (222)
T d1zunb3          79 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIA-SLL--GIKHIVVAINKMDL  154 (222)
T ss_dssp             CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HHT--TCCEEEEEEECTTT
T ss_pred             eeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHH-HHc--CCCEEEEEEEcccc
Confidence            3456667788999999999999999999988999999999999986433322 2222222 111  12458999999998


Q ss_pred             CCcC--C----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          96 FDAA--S----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        96 ~~~~--~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      .+..  .    ..++...+...            .+....++++++||++|.|+.
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGI------------AFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTT------------TCCCSEEEEEECCTTTCTTTS
T ss_pred             ccccceehhhhHHHHhhhhHhh------------ccCCCceEEEEEEcccCccCC
Confidence            7511  1    11222333221            123356889999999999874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1e-12  Score=87.64  Aligned_cols=122  Identities=15%  Similarity=0.109  Sum_probs=79.4

Q ss_pred             CceeEEEECCEEEEEEEcCCChhhH------------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161          16 PTSEELSMGDIVFTTHDLGGHVQAR------------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD   83 (155)
Q Consensus        16 ~~~~~~~~~~~~~~~~Dt~G~~~~~------------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~   83 (155)
                      .....+.+++..+.++|+||.....            .....+++.+|++++|+|++.+.... ...++..+..    .+
T Consensus        46 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~----~~  120 (186)
T d1mkya2          46 PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER----RG  120 (186)
T ss_dssp             -CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TT
T ss_pred             cceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH----cC
Confidence            3456788899999999999964322            23445567899999999997654332 2333333322    35


Q ss_pred             CcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161          84 VPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus        84 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                      .|+++|+||+|+...  ....++.+.+...            .......+++++||++|.|+++++++|.+.+
T Consensus       121 ~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         121 RASVVVFNKWDLVVHREKRYDEFTKLFREK------------LYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CEEEEEEECGGGSTTGGGCHHHHHHHHHHH------------CGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CceeeeccchhhhcchhhhhhhHHHHHHHH------------hcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            899999999998642  2233433333221            0111234689999999999999999997643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.34  E-value=1.9e-11  Score=86.05  Aligned_cols=81  Identities=15%  Similarity=0.050  Sum_probs=64.6

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      ..|+......+.+++.+++++||||+..|.......++-+|++++|+|+.+.-.-.....| .....    .++|.++++
T Consensus        52 ~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~----~~~p~~i~i  126 (267)
T d2dy1a2          52 RTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER----LGLPRMVVV  126 (267)
T ss_dssp             TSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEE
T ss_pred             CCeEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh----ccccccccc
Confidence            3466666788999999999999999999999999999999999999999875544433333 33322    368999999


Q ss_pred             eCCCcC
Q psy2161          91 NKIDIF   96 (155)
Q Consensus        91 nK~Dl~   96 (155)
                      ||+|..
T Consensus       127 Nk~D~~  132 (267)
T d2dy1a2         127 TKLDKG  132 (267)
T ss_dssp             ECGGGC
T ss_pred             cccccc
Confidence            999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=1.3e-11  Score=85.77  Aligned_cols=116  Identities=14%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC-------chHHHHHH-HHHHHhCCCCCC
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS-------RFPESKYE-LDSLLADDALTD   83 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~-------~~~~~~~~-l~~~~~~~~~~~   83 (155)
                      -|+......+.++++++++.||||+..|...+..-++.+|++|+|+|++...       .-+....| +...+     .-
T Consensus        70 iTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~-----gv  144 (239)
T d1f60a3          70 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-----GV  144 (239)
T ss_dssp             CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-----TC
T ss_pred             eccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc-----CC
Confidence            4666678889999999999999999999999999999999999999997521       01111122 12221     12


Q ss_pred             CcEEEEEeCCCcCCcCC--H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161          84 VPILILGNKIDIFDAAS--E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG  144 (155)
Q Consensus        84 ~piilv~nK~Dl~~~~~--~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  144 (155)
                      ++++++.||+|+.+...  .    .++...+...            ......+.++.+||..|.|+.
T Consensus       145 ~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~------------~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         145 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV------------GYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH------------TCCGGGCCEEECCTTTCBTTT
T ss_pred             CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhc------------CCCCCcEEEEEEEccCCCcce
Confidence            45889999999865211  1    2222222221            122245678999999998863

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=3.4e-11  Score=80.82  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccc
Q psy2161          42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS  121 (155)
Q Consensus        42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  121 (155)
                      .+...+..++++++++|++.+..- ....++..+..    .++|+++|+||+|+.......+..+.+...          
T Consensus        98 ~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~----------  162 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQT----------  162 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHH----------
T ss_pred             hhhccccchhhhhhhhhccccccc-ccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHH----------
Confidence            445566788999999999765332 22333443322    368999999999986533333322222110          


Q ss_pred             cccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161         122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus       122 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                        .......+++.+||++|.|+++++++|.+.++
T Consensus       163 --l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         163 --LNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             --HTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             --hcccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence              01124457899999999999999999998764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=5.7e-11  Score=83.88  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161          11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG   90 (155)
Q Consensus        11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~   90 (155)
                      .-|+......+++++.+++++||||+..|.......++-+|++|+|+|+.+.-.-...+.| ....    ..+.|.++++
T Consensus        56 ~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~----~~~lP~i~fI  130 (276)
T d2bv3a2          56 GITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE----KYKVPRIAFA  130 (276)
T ss_dssp             CCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH----TTTCCEEEEE
T ss_pred             CCccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH----HcCCCEEEEE
Confidence            3466667899999999999999999999999999999999999999999876544443333 3332    2379999999


Q ss_pred             eCCCcCCc---CCHHHHHhhhc
Q psy2161          91 NKIDIFDA---ASEDEVRHFFG  109 (155)
Q Consensus        91 nK~Dl~~~---~~~~~i~~~~~  109 (155)
                      ||+|....   ...+++.+.++
T Consensus       131 NKmDr~~ad~~~~l~ei~~~l~  152 (276)
T d2bv3a2         131 NKMDKTGADLWLVIRTMQERLG  152 (276)
T ss_dssp             ECTTSTTCCHHHHHHHHHHTTC
T ss_pred             ecccccccccchhHHHHHHHhC
Confidence            99998652   23345555444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=4.4e-12  Score=87.37  Aligned_cols=118  Identities=14%  Similarity=0.167  Sum_probs=75.0

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCc------hHHHHHHHHHHHhCCCCCCCcE
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR------FPESKYELDSLLADDALTDVPI   86 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~------~~~~~~~l~~~~~~~~~~~~pi   86 (155)
                      |+......++++++.+++.||||+..|........+-+|++++|+|+.+...      ....+..+....   .+...++
T Consensus        68 ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~---~~~~~~i  144 (224)
T d1jnya3          68 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK---TMGLDQL  144 (224)
T ss_dssp             ------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH---HTTCTTC
T ss_pred             cccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH---HhCCCce
Confidence            4444566778888999999999999999999999999999999999986310      111211111111   1234578


Q ss_pred             EEEEeCCCcCC-cCCH---HHH----HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161          87 LILGNKIDIFD-AASE---DEV----RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN  145 (155)
Q Consensus        87 ilv~nK~Dl~~-~~~~---~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  145 (155)
                      +++.||+|+.. ....   +.+    ...+...            ........++++||..|.|+.+
T Consensus       145 Iv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~------------~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         145 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY------------GFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHT------------TCCCTTCEEEECBTTTTBTTTB
T ss_pred             EEEEEcccCCCccccHHHHHHHHHHHHhHHHhc------------CCCcccCeEEEEEccCCCCccc
Confidence            99999999864 2222   222    2222211            1233567899999999999753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.11  E-value=1.2e-10  Score=81.11  Aligned_cols=123  Identities=14%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---c---hHHHHHHHHHHHhCCCCCCCc
Q psy2161          12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---R---FPESKYELDSLLADDALTDVP   85 (155)
Q Consensus        12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~---~~~~~~~l~~~~~~~~~~~~p   85 (155)
                      .|+......+.+++.++.+.||||+..|..........+|++++|+|+....   .   .......+... ...  .-.+
T Consensus        88 ~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~~--~i~~  164 (245)
T d1r5ba3          88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQ--GINH  164 (245)
T ss_dssp             ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHT--TCSS
T ss_pred             ccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HHc--CCCe
Confidence            3444445667778899999999999999999988899999999999997521   0   11122222212 111  2345


Q ss_pred             EEEEEeCCCcCCc-CCH---HHHHhhhcccCccCCCcccccccc----cCccEEEEEeeeccCCChHHHH
Q psy2161          86 ILILGNKIDIFDA-ASE---DEVRHFFGLYGLTTGKEFTSREIL----QMRPIELFMCSVLKRQGFGNGF  147 (155)
Q Consensus        86 iilv~nK~Dl~~~-~~~---~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~  147 (155)
                      +++++||+|+... ...   .++.+.++.+          ...+    ....++++++||++|.||.+++
T Consensus       165 iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~----------l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         165 LVVVINKMDEPSVQWSEERYKECVDKLSMF----------LRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             EEEEEECTTSTTCSSCHHHHHHHHHHHHHH----------HHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EEEEEEcCCCCccchhHHHHHHHHHHHHHH----------HHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            8899999998642 222   2332222210          0001    1235789999999999997653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=2.3e-11  Score=82.25  Aligned_cols=86  Identities=23%  Similarity=0.332  Sum_probs=61.5

Q ss_pred             ceeEEEECCEEEEEEEcCCChhhHHhHHhh----cCCCCEEEEEEECCC-CCchHHHHHHHHHHH---hCCCCCCCcEEE
Q psy2161          17 TSEELSMGDIVFTTHDLGGHVQARRVWRDY----FPAVDAIVFIIDASD-RSRFPESKYELDSLL---ADDALTDVPILI   88 (155)
Q Consensus        17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~~ad~ii~v~D~~~-~~~~~~~~~~l~~~~---~~~~~~~~piil   88 (155)
                      ....+..++..+.+||+||++.++..+..+    ...++.+++++|+.+ ..+++....|+..++   ......++|+++
T Consensus        37 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piii  116 (209)
T d1nrjb_          37 PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI  116 (209)
T ss_dssp             CEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred             eEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence            345556677889999999998876655544    445689999999864 567777776665443   223345799999


Q ss_pred             EEeCCCcCCcCCHH
Q psy2161          89 LGNKIDIFDAASED  102 (155)
Q Consensus        89 v~nK~Dl~~~~~~~  102 (155)
                      |+||+|+.+.....
T Consensus       117 v~NK~D~~~~~~~~  130 (209)
T d1nrjb_         117 ACNKSELFTARPPS  130 (209)
T ss_dssp             EEECTTSTTCCCHH
T ss_pred             EEEeecccccCcHH
Confidence            99999997644433

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.4e-08  Score=66.61  Aligned_cols=117  Identities=13%  Similarity=0.192  Sum_probs=71.0

Q ss_pred             eEEEECCEEEEEEEcCCChhhHH---------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161          19 EELSMGDIVFTTHDLGGHVQARR---------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL   89 (155)
Q Consensus        19 ~~~~~~~~~~~~~Dt~G~~~~~~---------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv   89 (155)
                      .....+...+..||++|......         ........+++++++.|.+...  .....+...+. .   ...|.++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~-~---~~~~~i~v  119 (179)
T d1egaa1          46 GIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT--PDDEMVLNKLR-E---GKAPVILA  119 (179)
T ss_dssp             EEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC--HHHHHHHHHHH-S---SSSCEEEE
T ss_pred             eeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccc--hhHHHHHHHhh-h---ccCceeee
Confidence            44445668888899988533211         1122334677888888876532  22223333332 1   35689999


Q ss_pred             EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161          90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID  155 (155)
Q Consensus        90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~  155 (155)
                      +||+|+...  ..++.......            .......+++++||++|.|++++++++.+.++
T Consensus       120 ~~k~d~~~~--~~~~~~~~~~~------------~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         120 VNKVDNVQE--KADLLPHLQFL------------ASQMNFLDIVPISAETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             EESTTTCCC--HHHHHHHHHHH------------HTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             eeeeeccch--hhhhhhHhhhh------------hhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence            999997652  22222222110            01113357899999999999999999998774

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=2.5e-08  Score=72.17  Aligned_cols=80  Identities=16%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC---cCCH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD---AASE  101 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~---~~~~  101 (155)
                      ++.++++||||+..|.......++-+|++++|+|+.+.-...... .+.....    .+.|+++++||+|...   ..+.
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKiDr~~~el~~~~  169 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDRALLELQVSK  169 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHHHHHTSCCCH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECcccccccHHhhH
Confidence            478999999999999998888899999999999998754444333 3333332    2689999999999653   4456


Q ss_pred             HHHHhhhc
Q psy2161         102 DEVRHFFG  109 (155)
Q Consensus       102 ~~i~~~~~  109 (155)
                      .++.+.+.
T Consensus       170 ~~~~~~l~  177 (341)
T d1n0ua2         170 EDLYQTFA  177 (341)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            66555443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=1.2e-08  Score=71.78  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=63.1

Q ss_pred             HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccc
Q psy2161          41 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT  120 (155)
Q Consensus        41 ~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  120 (155)
                      ......++.+|+|++|+|+.+|-+...  ..+++++     .++|+++|+||+|+.+......+.+++..          
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~----------   69 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN----------   69 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT----------
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHh----------
Confidence            345567999999999999988765543  3455554     26899999999999764444445555443          


Q ss_pred             ccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         121 SREILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       121 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                             ....++.+|++++.+..++...+.+
T Consensus        70 -------~~~~~i~isa~~~~~~~~~~~~~~~   94 (273)
T d1puja_          70 -------QGIRSLSINSVNGQGLNQIVPASKE   94 (273)
T ss_dssp             -------TTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred             -------cCCccceeecccCCCccccchhhhh
Confidence                   3456789999999998877666543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=9.2e-07  Score=57.62  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccc
Q psy2161          48 PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSRE  123 (155)
Q Consensus        48 ~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~  123 (155)
                      ..+..++.+.+........ ...++.....    ...++++++||+|+.+.....    .+.+.+..             
T Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~-------------  158 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLA-------------  158 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG-------------
T ss_pred             hheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHh-------------
Confidence            3444555666665443332 2344444432    357899999999986532222    22222221             


Q ss_pred             cccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161         124 ILQMRPIELFMCSVLKRQGFGNGFRWLANYI  154 (155)
Q Consensus       124 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i  154 (155)
                        .....+++.+||++|.|+++++++|.+.+
T Consensus       159 --~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 --FNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             --GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence              12346899999999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.42  E-value=1.1e-07  Score=65.02  Aligned_cols=126  Identities=16%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             EEEEEEEcCCChhhHHhH---Hhh--cCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCCcC
Q psy2161          26 IVFTTHDLGGHVQARRVW---RDY--FPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFDAA   99 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~~~~~---~~~--~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~~~   99 (155)
                      ..+.+.|+||+..+....   ...  ....+.+++++|+.....-.... ..+..... ......|.++|+||+|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHH-HHHhCCCceeeeeccccccHH
Confidence            568999999997653321   111  22466899999985432222111 11111100 011257999999999987532


Q ss_pred             CHHHHHhhhc----------ccCccCCCcccc---cccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         100 SEDEVRHFFG----------LYGLTTGKEFTS---REILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       100 ~~~~i~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                      ....+.....          ............   ...-....++++++||++|+|+++++.+|.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e  239 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE  239 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            2211111110          000000000000   0000123467899999999999999999876

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=1.3e-06  Score=59.38  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             hcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccc
Q psy2161          46 YFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREI  124 (155)
Q Consensus        46 ~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  124 (155)
                      -..+.|.+++|+.+.+|.. ...+.+++-....    .++|.++|+||+||.+......+......              
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~--------------   68 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI--------------   68 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--------------
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc--------------
Confidence            4578999999998876543 3444455544422    47899999999999653222233333222              


Q ss_pred             ccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         125 LQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       125 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                       ......++.+|++++.|++++..++..
T Consensus        69 -~~~~~~v~~vSa~~~~g~~~L~~~l~~   95 (225)
T d1u0la2          69 -YSGLYPIVKTSAKTGMGIEELKEYLKG   95 (225)
T ss_dssp             -HTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             -cccceeEEEeccccchhHhhHHHHhcC
Confidence             112356899999999999999988754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=5e-06  Score=61.15  Aligned_cols=117  Identities=13%  Similarity=0.026  Sum_probs=62.3

Q ss_pred             CEEEEEEEcCCChhh----H-HhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC-
Q psy2161          25 DIVFTTHDLGGHVQA----R-RVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD-   97 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~----~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~-   97 (155)
                      +..+.+|||||-...    . .+....+..+|.++++.|..    +... ...+..+..    .++|+++|.||+|... 
T Consensus       106 ~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~----~~~~d~~l~~~l~~----~~k~~~~V~nK~D~~~~  177 (400)
T d1tq4a_         106 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR----FKKNDIDIAKAISM----MKKEFYFVRTKVDSDIT  177 (400)
T ss_dssp             CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSC----CCHHHHHHHHHHHH----TTCEEEEEECCHHHHHH
T ss_pred             CCeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCC----CCHHHHHHHHHHHH----cCCCEEEEEeCcccccc
Confidence            356889999995432    1 12333456789998887643    2222 233333422    2689999999999531 


Q ss_pred             --------cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc--CCChHHHHHHHHhhcC
Q psy2161          98 --------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK--RQGFGNGFRWLANYID  155 (155)
Q Consensus        98 --------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~i~  155 (155)
                              ....+...+.+...-      ...........-+++.+|+.+  ..++.++.+++.+.+|
T Consensus       178 ~~~~~~~~~~~~e~~l~~ir~~~------~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         178 NEADGEPQTFDKEKVLQDIRLNC------VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHH------HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             hhhhcccccccHHHHHHHHHHHH------HHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence                    112222211111000      000000111223467777654  4589999999887764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=7.8e-07  Score=60.67  Aligned_cols=89  Identities=13%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             hcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhcccCccCCCcccccc
Q psy2161          46 YFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTSRE  123 (155)
Q Consensus        46 ~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~  123 (155)
                      -..+.|.+++|+++.+|. +...+.+++-...    ..+++.++|+||+||.+.... ..+......             
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~-------------   69 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAED-------------   69 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHH-------------
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHH-------------
Confidence            357899999999987663 3444445544442    247899999999999753222 222222222             


Q ss_pred             cccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161         124 ILQMRPIELFMCSVLKRQGFGNGFRWLAN  152 (155)
Q Consensus       124 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  152 (155)
                       +...+++++.+|++++.|++++..+|..
T Consensus        70 -y~~~g~~v~~~Sa~~~~gl~~L~~~l~~   97 (231)
T d1t9ha2          70 -YRNIGYDVYLTSSKDQDSLADIIPHFQD   97 (231)
T ss_dssp             -HHHHTCCEEECCHHHHTTCTTTGGGGTT
T ss_pred             -HhhccccceeeecCChhHHHHHHHhhcc
Confidence             2223568899999999999998877643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=2.5e-05  Score=55.79  Aligned_cols=107  Identities=15%  Similarity=0.133  Sum_probs=61.0

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----  100 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----  100 (155)
                      |+.+.+.+|.|.-.-..   .+...+|.+++|.++...+.....+.-+.++         +=++|+||+|+.+...    
T Consensus       146 g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~~~~~~~~  213 (327)
T d2p67a1         146 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDNHTNVAIA  213 (327)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTCHHHHHHH
T ss_pred             CCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccchHHHHHH
Confidence            35678888877542222   2345799999999775544443333333333         3378889999865221    


Q ss_pred             HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      ..+....+....          .....-..+++.|||++|.|++++.+.+.+.
T Consensus       214 ~~~~~~al~~~~----------~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~  256 (327)
T d2p67a1         214 RHMYESALHILR----------RKYDEWQPRVLTCSALEKRGIDEIWHAIIDF  256 (327)
T ss_dssp             HHHHHHHHHHSC----------CSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcc----------cCCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence            122222222110          0011223479999999999999999988653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.70  E-value=0.00018  Score=49.44  Aligned_cols=83  Identities=8%  Similarity=0.071  Sum_probs=49.6

Q ss_pred             CCCCceeEEEECCEEEEEEEcCCChh-------hHHhHHhh--cCCCCEEEEEEECCCCCchHHHH---HHHHHHHhCCC
Q psy2161          13 TLHPTSEELSMGDIVFTTHDLGGHVQ-------ARRVWRDY--FPAVDAIVFIIDASDRSRFPESK---YELDSLLADDA   80 (155)
Q Consensus        13 T~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~--~~~ad~ii~v~D~~~~~~~~~~~---~~l~~~~~~~~   80 (155)
                      |..........++.++.++||||-..       .......+  ....++++||++++...--....   .++....... 
T Consensus        67 T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-  145 (257)
T d1h65a_          67 GPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-  145 (257)
T ss_dssp             CSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-
T ss_pred             ceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-
Confidence            33344666778899999999999421       22222222  23578999999886542112222   3333332111 


Q ss_pred             CCCCcEEEEEeCCCcCC
Q psy2161          81 LTDVPILILGNKIDIFD   97 (155)
Q Consensus        81 ~~~~piilv~nK~Dl~~   97 (155)
                       --.++++|.||+|...
T Consensus       146 -~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         146 -IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             -GGGGEEEEEECCSCCC
T ss_pred             -hhhCEEEEEECcccCC
Confidence             1258999999999754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.65  E-value=4.8e-05  Score=54.23  Aligned_cols=108  Identities=12%  Similarity=0.044  Sum_probs=63.2

Q ss_pred             CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH-H
Q psy2161          24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE-D  102 (155)
Q Consensus        24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~  102 (155)
                      .|+.+.|.+|.|.-.-....   ..-+|..++|......+..+..+.-+.         ..+=++|.||+|+.+.... .
T Consensus       142 ~g~d~iiiETVG~gq~e~~~---~~~~D~~v~v~~p~~GD~iQ~~k~gil---------E~aDi~vvNKaD~~~~~~~~~  209 (323)
T d2qm8a1         142 AGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAVNKADDGDGERRAS  209 (323)
T ss_dssp             TTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC------CCTTHH---------HHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCCeEEEeehhhhhhhhhh---hcccceEEEEeeccchhhhhhhhhhHh---------hhhheeeEeccccccchHHHH
Confidence            45788999998864333333   335999999998875543332211111         2355899999998763221 1


Q ss_pred             H----HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161         103 E----VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY  153 (155)
Q Consensus       103 ~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  153 (155)
                      .    ....+....          ........+++.|||++|.|++++.+++.+.
T Consensus       210 ~~~~~~~~~l~~~~----------~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~  254 (323)
T d2qm8a1         210 AAASEYRAALHILT----------PPSATWTPPVVTISGLHGKGLDSLWSRIEDH  254 (323)
T ss_dssp             HHHHHHHHHHTTBC----------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc----------ccccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence            1    122222210          0011123469999999999999999998653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.002  Score=44.73  Aligned_cols=68  Identities=16%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             EEEEEEEcCCCh-------------hhHHhHHhhcCCCCE-EEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          26 IVFTTHDLGGHV-------------QARRVWRDYFPAVDA-IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        26 ~~~~~~Dt~G~~-------------~~~~~~~~~~~~ad~-ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      ..+.++|+||-.             ....+...|+..++. +++|.+++....-.....+...+    .....++++|+|
T Consensus       125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vlt  200 (299)
T d2akab1         125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVIT  200 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEE
T ss_pred             CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEe
Confidence            568999999932             134567778887775 45556665554444555555554    223568999999


Q ss_pred             CCCcCC
Q psy2161          92 KIDIFD   97 (155)
Q Consensus        92 K~Dl~~   97 (155)
                      |+|..+
T Consensus       201 k~D~~~  206 (299)
T d2akab1         201 KLDLMD  206 (299)
T ss_dssp             CGGGSC
T ss_pred             cccccc
Confidence            999875

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.90  E-value=0.002  Score=44.87  Aligned_cols=68  Identities=19%  Similarity=0.212  Sum_probs=45.7

Q ss_pred             EEEEEEEcCCChh-------------hHHhHHhhcCCCCEEEEEE-ECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161          26 IVFTTHDLGGHVQ-------------ARRVWRDYFPAVDAIVFII-DASDRSRFPESKYELDSLLADDALTDVPILILGN   91 (155)
Q Consensus        26 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~-D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n   91 (155)
                      ..+.++||||-..             ...++..|++.++.+++++ +.+....-.....+...+.    .....+++|+|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEe
Confidence            6799999999421             3467788999999866665 4443333333445555552    23468999999


Q ss_pred             CCCcCC
Q psy2161          92 KIDIFD   97 (155)
Q Consensus        92 K~Dl~~   97 (155)
                      |+|...
T Consensus       207 k~D~~~  212 (306)
T d1jwyb_         207 KLDLMD  212 (306)
T ss_dssp             CTTSSC
T ss_pred             cccccc
Confidence            999865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.15  E-value=0.07  Score=36.35  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=24.1

Q ss_pred             EEEEEEcCCChh----hHHhHH---hhcCCCCEEEEEEECC
Q psy2161          27 VFTTHDLGGHVQ----ARRVWR---DYFPAVDAIVFIIDAS   60 (155)
Q Consensus        27 ~~~~~Dt~G~~~----~~~~~~---~~~~~ad~ii~v~D~~   60 (155)
                      +++++|+||--.    ...++.   ..+++||++++|+|..
T Consensus        67 ~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             eEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence            689999999532    223333   3366999999999874

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.07  E-value=0.58  Score=30.09  Aligned_cols=78  Identities=12%  Similarity=0.054  Sum_probs=48.3

Q ss_pred             CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcCCc-CCHH
Q psy2161          25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIFDA-ASED  102 (155)
Q Consensus        25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~~~-~~~~  102 (155)
                      .+.+.++|+++....  .....+..||.++++...+ ..++......+..+.+    .+.|++ +|.|+.+..+. ....
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHH
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhH
Confidence            367999999987643  2333466799999998754 3344555555544432    245665 78999986553 3344


Q ss_pred             HHHhhhc
Q psy2161         103 EVRHFFG  109 (155)
Q Consensus       103 ~i~~~~~  109 (155)
                      .....+.
T Consensus       184 ~~~~~~~  190 (237)
T d1g3qa_         184 AAEDVME  190 (237)
T ss_dssp             HHHHHHC
T ss_pred             HHHhhcC
Confidence            4444443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.02  E-value=0.12  Score=35.69  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             EEEEEEEcCCChhh----HHhHH---hhcCCCCEEEEEEECCC
Q psy2161          26 IVFTTHDLGGHVQA----RRVWR---DYFPAVDAIVFIIDASD   61 (155)
Q Consensus        26 ~~~~~~Dt~G~~~~----~~~~~---~~~~~ad~ii~v~D~~~   61 (155)
                      .+++++|+||--..    ..+..   ..++.+|++++|+|+.+
T Consensus        71 ~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             ccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            67999999995321    22233   33568999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.52  E-value=0.72  Score=31.35  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             CCCCCceeEEEECC-----------------EEEEEEEcCCChh----hH---HhHHhhcCCCCEEEEEEECCC
Q psy2161          12 PTLHPTSEELSMGD-----------------IVFTTHDLGGHVQ----AR---RVWRDYFPAVDAIVFIIDASD   61 (155)
Q Consensus        12 pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~----~~---~~~~~~~~~ad~ii~v~D~~~   61 (155)
                      .|+.++...+.+.+                 ..+++.|.||...    ..   .....-++.||++++|+|..+
T Consensus        44 tTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          44 ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            57777777776543                 4799999997321    11   123344789999999999865