Psyllid ID: psy2164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccEEEEcEEEccEEEccc
Coil and Loop (DISEMBL)
mdekhpmtkywlpltWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSligydnvnlplvytqk
Flexible Loop (DISEMBL)
mdekhpmtkywlpltwATNIINRARREATITSDHMVQTILNEMSDIRWRLGsligydnvnlplvytqk
Low Complexity Region (SEG)
MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQK
Disordered region (IsUnstruct)
*******TKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY***
Disordered Region (DISOPRED)
****HPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ*
Disordered Region (DISEMBL)
MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQK
Disordered Region (DISPRO)
****HPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q8NFU1	509	Bestrophin-2 OS=Homo sapi	yes	N/A	0.867	0.115	0.406	1e-08
Q8N1M1	668	Bestrophin-3 OS=Homo sapi	no	N/A	0.941	0.095	0.421	5e-08
Q6H1V1	669	Bestrophin-3 OS=Mus muscu	yes	N/A	0.941	0.095	0.421	5e-08
Q8BGM5	508	Bestrophin-2 OS=Mus muscu	no	N/A	0.867	0.116	0.389	7e-08
Q8NFU0	473	Bestrophin-4 OS=Homo sapi	no	N/A	0.941	0.135	0.390	8e-08
Q8WMR7	428	Bestrophin-1 (Fragment) O	no	N/A	0.911	0.144	0.354	1e-06
Q23369	499	Uncharacterized protein Z	yes	N/A	0.941	0.128	0.328	2e-06
Q6UY87	585	Bestrophin-1 OS=Macaca fa	N/A	N/A	0.911	0.105	0.370	4e-06
O76090	585	Bestrophin-1 OS=Homo sapi	no	N/A	0.911	0.105	0.370	4e-06
O88870	551	Bestrophin-1 OS=Mus muscu	no	N/A	0.911	0.112	0.338	5e-06

>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%)

Query: 9   KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
           KYW+P  W +N+  +ARRE  I  +  ++ +L E++  R + G L  YD +++PLVYTQ
Sbjct: 180 KYWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQ 238

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.
Homo sapiens (taxid: 9606)

>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 4   KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
           K P  KYW+P  W  N+  +AR E  I     +Q+++ EM+  R     L GYD V +PL
Sbjct: 175 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 234

Query: 64  VYTQ 67
           VYTQ
Sbjct: 235 VYTQ 238

Forms calcium-sensitive (By similarity) chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 4   KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
           K P  KYW+P  W  N+  +AR E  I     +Q+++ EM+  R     L GYD V +PL
Sbjct: 175 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 234

Query: 64  VYTQ 67
           VYTQ
Sbjct: 235 VYTQ 238

Forms calcium-sensitive (By similarity) chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 9   KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
           KYW+P  W +++  +ARRE  I  +  ++ +L E++  R + G L  YD +++PLVYTQ
Sbjct: 180 KYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVYTQ 238

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 4   KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
           K    KYW+P  W TN+  +ARR+  I  D  +  +L E++  R +   L  YD +++PL
Sbjct: 175 KSDFNKYWVPCVWFTNLAAQARRDGRIRDDIALCLLLEELNKYRAKCSMLFHYDWISIPL 234

Query: 64  VYTQ 67
           VYTQ
Sbjct: 235 VYTQ 238

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q8WMR7|BEST1_PIG Bestrophin-1 (Fragment) OS=Sus scrofa GN=BEST1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 6  PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
          P   +W+P  W  N+  +A     I    ++Q++L+EM+ +R + G L  YD +++PLVY
Sbjct: 24 PHNSFWMPWVWFANLSTKAWIGGRIRDPVLLQSLLDEMNTLRTQCGHLYAYDWISVPLVY 83

Query: 66 TQ 67
          TQ
Sbjct: 84 TQ 85

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Sus scrofa (taxid: 9823)

>sp|Q23369|YHDI_CAEEL Uncharacterized protein ZC518.1 OS=Caenorhabditis elegans GN=ZC518.1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%)

Query: 4   KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
           K P ++YW  + W+ N++   +++  + S +++  I++E+   R  L SL+ YD V +PL
Sbjct: 176 KDPYSRYWTSIQWSLNLVYECQKKGKVDSYYLMNKIVDEIGKFRHGLASLLKYDWVPVPL 235

Query: 64  VYTQ 67
           VY Q
Sbjct: 236 VYPQ 239

Caenorhabditis elegans (taxid: 6239)

>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 6   PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
           P   +W+P  W  N+  +A     I    ++Q++LNEM+ +R + G L  YD +++PLVY
Sbjct: 177 PHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVY 236

Query: 66  TQ 67
           TQ
Sbjct: 237 TQ 238

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Macaca fascicularis (taxid: 9541)

>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 6   PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
           P   +W+P  W  N+  +A     I    ++Q++LNEM+ +R + G L  YD +++PLVY
Sbjct: 177 PHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVY 236

Query: 66  TQ 67
           TQ
Sbjct: 237 TQ 238

Forms calcium-sensitive chloride channels. Highly permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 6   PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
           P   +W+P  W  N+  +A     I    ++Q+++NE+  +R + G L  YD +++PLVY
Sbjct: 177 PHNTFWVPWVWFANLSMKAYLGGRIRDTVLLQSLMNEVCTLRTQCGQLYAYDWISIPLVY 236

Query: 66  TQ 67
           TQ
Sbjct: 237 TQ 238

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
395398343	676	bestrophin 2 [Spodoptera littoralis]	0.985	0.099	0.746	1e-22
357631554	664	hypothetical protein KGM_15372 [Danaus p	0.985	0.100	0.746	1e-22
328708187	700	PREDICTED: bestrophin-3-like isoform 2 [	0.985	0.095	0.731	2e-22
195377064	822	GJ11999 [Drosophila virilis] gi|19415447	0.985	0.081	0.731	3e-22
195015208	818	GH16281 [Drosophila grimshawi] gi|193897	0.985	0.081	0.731	3e-22
312381229	776	hypothetical protein AND_06516 [Anophele	0.985	0.086	0.716	6e-22
195126985	803	GI13224 [Drosophila mojavensis] gi|19391	0.985	0.083	0.716	7e-22
157131174	763	bestrophin 2,3,4 [Aedes aegypti] gi|1571	0.985	0.087	0.716	1e-21
328708185	700	PREDICTED: bestrophin-3-like isoform 1 [	0.985	0.095	0.716	1e-21
158292993	782	AGAP004881-PA [Anopheles gambiae str. PE	0.985	0.085	0.716	1e-21

>gi|395398343|gb|AFN57625.1| bestrophin 2 [Spodoptera littoralis]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 58/67 (86%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           MD K PM+KYW+PL WATNIINRAR+E  ITSDH+VQT+L E+SDIR RLG+LIGYD V 
Sbjct: 178 MDGKSPMSKYWMPLVWATNIINRARKEGLITSDHIVQTLLVELSDIRRRLGALIGYDTVC 237

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 238 VPLVYTQ 244

Source: Spodoptera littoralis

Species: Spodoptera littoralis

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631554|gb|EHJ79024.1| hypothetical protein KGM_15372 [Danaus plexippus]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 58/67 (86%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           MD K PM+KYW+PL WATNIINRAR+E  ITSDH+VQT+L E+SDIR RLG+LIGYD V 
Sbjct: 175 MDGKSPMSKYWMPLVWATNIINRARKEGLITSDHIVQTLLVELSDIRRRLGALIGYDTVC 234

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 235 VPLVYTQ 241

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708187|ref|XP_003243619.1| PREDICTED: bestrophin-3-like isoform 2 [Acyrthosiphon pisum]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 60/67 (89%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           ++ K  MT YW+PLTWATNIINRARRE  I++DHMVQTIL EMSD+R+RLGSLIGYDNVN
Sbjct: 176 VEAKTAMTNYWIPLTWATNIINRARREKLISNDHMVQTILLEMSDMRYRLGSLIGYDNVN 235

Query: 61  LPLVYTQ 67
           +P++Y+Q
Sbjct: 236 IPILYSQ 242

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377064|ref|XP_002047312.1| GJ11999 [Drosophila virilis] gi|194154470|gb|EDW69654.1| GJ11999 [Drosophila virilis]

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 57/67 (85%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           M++K PM+KYW+PL WATNIINRAR+E  I SDH+VQTIL E+SDIR RLG LIGYD V 
Sbjct: 180 MNQKSPMSKYWMPLVWATNIINRARKEGLIASDHIVQTILVELSDIRRRLGGLIGYDTVC 239

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 240 VPLVYTQ 246

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195015208|ref|XP_001984157.1| GH16281 [Drosophila grimshawi] gi|193897639|gb|EDV96505.1| GH16281 [Drosophila grimshawi]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 57/67 (85%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           M++K PM+KYW+PL WATNIINRAR+E  I SDH+VQTIL E+SDIR RLG LIGYD V 
Sbjct: 180 MNQKSPMSKYWMPLVWATNIINRARKEGLIASDHIVQTILVELSDIRRRLGGLIGYDTVC 239

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 240 VPLVYTQ 246

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381229|gb|EFR27022.1| hypothetical protein AND_06516 [Anopheles darlingi]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           MD K PM+KYW+PL WATNIINRAR++  I SDH+VQT+L E+SDIR RLG LIGYD V+
Sbjct: 138 MDAKSPMSKYWMPLVWATNIINRARKDQLIPSDHIVQTLLMELSDIRRRLGGLIGYDTVS 197

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 198 VPLVYTQ 204

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126985|ref|XP_002007949.1| GI13224 [Drosophila mojavensis] gi|193919558|gb|EDW18425.1| GI13224 [Drosophila mojavensis]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           M++K PM+KYW+PL WATNIINRAR++  I SDH+VQTIL E+SDIR RLG LIGYD V 
Sbjct: 155 MNQKSPMSKYWMPLVWATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVC 214

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 215 VPLVYTQ 221

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131174|ref|XP_001662152.1| bestrophin 2,3,4 [Aedes aegypti] gi|157133653|ref|XP_001656278.1| bestrophin 2,3,4 [Aedes aegypti] gi|108870740|gb|EAT34965.1| AAEL012831-PA [Aedes aegypti] gi|108871620|gb|EAT35845.1| AAEL012021-PA [Aedes aegypti]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 56/67 (83%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           MD K PM+KYW+PL WATNIINRAR++  I SDH+VQT+L E+SDIR RLG LIGYD V 
Sbjct: 175 MDSKSPMSKYWMPLVWATNIINRARKDQMIPSDHIVQTLLMELSDIRRRLGGLIGYDTVC 234

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 235 VPLVYTQ 241

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708185|ref|XP_001944701.2| PREDICTED: bestrophin-3-like isoform 1 [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 58/67 (86%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           MDE+ PM+KYW+PL WATNIINRARRE+ I+SD +VQT+L E+SDIR RLGS+I YD V 
Sbjct: 176 MDERSPMSKYWMPLVWATNIINRARRESLISSDQVVQTLLVELSDIRRRLGSIISYDTVC 235

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 236 VPLVYTQ 242

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292993|ref|XP_558233.3| AGAP004881-PA [Anopheles gambiae str. PEST] gi|157016893|gb|EAL40404.3| AGAP004881-PA [Anopheles gambiae str. PEST]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 56/67 (83%)

Query: 1   MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
           MD K PM+KYW+PL WATNIINRAR++  I SDH+VQT+L E+SDIR RLG LIGYD V 
Sbjct: 175 MDSKSPMSKYWMPLVWATNIINRARKDQLIPSDHIVQTLLMELSDIRRRLGGLIGYDTVC 234

Query: 61  LPLVYTQ 67
           +PLVYTQ
Sbjct: 235 VPLVYTQ 241

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0035696	809	Best2 "Bestrophin 2" [Drosophi	0.985	0.082	0.701	7.6e-21
FB|FBgn0040238	769	Best1 "Bestrophin 1" [Drosophi	0.985	0.087	0.470	4.3e-12
FB|FBgn0036491	526	Best4 "Bestrophin 4" [Drosophi	0.985	0.127	0.455	6.3e-12
FB|FBgn0036492	535	Best3 "Bestrophin 3" [Drosophi	0.911	0.115	0.437	7.8e-11
UNIPROTKB|E1C3A0	425	BEST1 "Uncharacterized protein	0.911	0.145	0.435	2.9e-10
UNIPROTKB|E1C882	669	BEST3 "Uncharacterized protein	0.970	0.098	0.454	6.2e-10
UNIPROTKB|F1SDY1	507	BEST2 "Uncharacterized protein	0.911	0.122	0.403	1e-08
UNIPROTKB|E1BF90	665	BEST3 "Uncharacterized protein	0.941	0.096	0.421	3.2e-08
UNIPROTKB|F1SH43	666	BEST3 "Uncharacterized protein	0.941	0.096	0.421	3.2e-08
UNIPROTKB|F8VVZ2	562	BEST3 "Bestrophin-3" [Homo sap	0.941	0.113	0.421	3.2e-08

FB|FBgn0035696 Best2 "Bestrophin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 256 (95.2 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 47/67 (70%), Positives = 57/67 (85%)

Query:     1 MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
             +++K PM+KYW+PL WATNIINRAR++  I SDH+VQTIL E+SDIR RLG LIGYD V 
Sbjct:   180 LNQKSPMSKYWMPLVWATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVC 239

Query:    61 LPLVYTQ 67
             +PLVYTQ
Sbjct:   240 VPLVYTQ 246

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0006820 "anion transport" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

FB|FBgn0040238 Best1 "Bestrophin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query:     1 MDEKHPM-TKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNV 59
             M++  P  +K+WLP+ WA +II RAR+E  I  D  V+TI++E++  R + G LI YD +
Sbjct:   175 MNKAFPRPSKHWLPIVWAASIITRARKEGRIRDDFAVKTIIDELNKFRGQCGLLISYDTI 234

Query:    60 NLPLVYTQ 67
             ++PLVYTQ
Sbjct:   235 SVPLVYTQ 242

GO:0005254 "chloride channel activity" evidence=NAS;IDA

GO:0072320 "volume-sensitive chloride channel activity" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0006884 "cell volume homeostasis" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

FB|FBgn0036491 Best4 "Bestrophin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query:     1 MDEKHPM-TKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNV 59
             MD+  P   K+W+P+ WA +I+ RARRE  I  D+ V+TI++E++ +R   G L+ YD +
Sbjct:   175 MDQAFPSYPKHWMPIVWAASIVMRARRENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWI 234

Query:    60 NLPLVYTQ 67
             ++PLVYTQ
Sbjct:   235 SVPLVYTQ 242

GO:0006820 "anion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

FB|FBgn0036492 Best3 "Bestrophin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 28/64 (43%), Positives = 44/64 (68%)

Query:     4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
             KHP  KYW+P+ WA +I+ RAR+E  I  D  ++++++E++  R     LI YD +++PL
Sbjct:   181 KHP--KYWMPIVWAASIVTRARKEGRIWDDFSLKSMIDELNKFRAGCNMLIHYDTISVPL 238

Query:    64 VYTQ 67
             VYTQ
Sbjct:   239 VYTQ 242

GO:0006820 "anion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

UNIPROTKB|E1C3A0 BEST1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query:     6 PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
             P  K+W+P  W +N+  +AR E  I    ++Q ILNE++ +R + G L GYD +++PLVY
Sbjct:   177 PHNKFWIPCVWFSNLAVKARNEGRIRDSVLLQGILNELNTLRSQCGRLYGYDWISIPLVY 236

Query:    66 TQ 67
             TQ
Sbjct:   237 TQ 238

GO:0005254 "chloride channel activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0051924 "regulation of calcium ion transport" evidence=IEA

UNIPROTKB|E1C882 BEST3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 30/66 (45%), Positives = 39/66 (59%)

Query:     2 DEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNL 61
             D K P  KYW+P  W  N+ ++AR E  I     +QT++NEM+  R     L GYD V +
Sbjct:   173 DLKSPHLKYWVPFVWFGNLASKARNEGRIRDSVDLQTLMNEMNKFRSWCSLLFGYDWVGI 232

Query:    62 PLVYTQ 67
             PLVYTQ
Sbjct:   233 PLVYTQ 238

GO:0005254 "chloride channel activity" evidence=IEA

GO:0043271 "negative regulation of ion transport" evidence=IEA

UNIPROTKB|F1SDY1 BEST2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query:     6 PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
             P  KYW+P  W +N+  +ARRE  I  +  ++ +L E++  R + G L  YD +++PLVY
Sbjct:   177 PYNKYWVPCVWFSNLAAQARREGRIRDNGALKLLLEELNVFRGKCGMLFHYDWISVPLVY 236

Query:    66 TQ 67
             TQ
Sbjct:   237 TQ 238

GO:0051899 "membrane depolarization" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|E1BF90 BEST3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query:     4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
             K P  KYW+P  W  N+  +AR+E  I     +Q+++ EM+  R     L GYD V +PL
Sbjct:   175 KSPHLKYWVPFIWFGNLAAKARKEGRIRDSVDLQSLMTEMNRFRSWCSLLFGYDWVGIPL 234

Query:    64 VYTQ 67
             VYTQ
Sbjct:   235 VYTQ 238

GO:0043271 "negative regulation of ion transport" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|F1SH43 BEST3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 27/64 (42%), Positives = 37/64 (57%)

Query:     4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
             K P  KYW+P  W  N+  +AR+E  I     +Q+++ EM+  R     L GYD V +PL
Sbjct:   177 KSPHLKYWVPFIWFGNLAAKARKEGRIRDSVDLQSLMTEMNRFRSWCSLLFGYDWVGIPL 236

Query:    64 VYTQ 67
             VYTQ
Sbjct:   237 VYTQ 240

GO:0043271 "negative regulation of ion transport" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|F8VVZ2 BEST3 "Bestrophin-3" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query:     4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
             K P  KYW+P  W  N+  +AR E  I     +Q+++ EM+  R     L GYD V +PL
Sbjct:    69 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 128

Query:    64 VYTQ 67
             VYTQ
Sbjct:   129 VYTQ 132

GO:0005254 "chloride channel activity" evidence=IEA

GO:0043271 "negative regulation of ion transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
pfam01062	284	pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid	2e-11

>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 3   EKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLP 62
            +     Y L + WA ++  +ARRE  I  D  +  +  E++++R  LG     D   +P
Sbjct: 150 LQSSNPPYALLIVWAASL-AKARREGRI-DDIQLVQLDEELNELRDALGGCERIDWTPIP 207

Query: 63  LVYTQ 67
           L YTQ
Sbjct: 208 LAYTQ 212

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG3547|consensus	450		99.94
PF01062	293	Bestrophin: Bestrophin, RFP-TM, chloride channel;	98.82
COG3781	306	Predicted membrane protein [Function unknown]	88.42

>KOG3547|consensus

Probab=99.94  E-value=6.1e-28  Score=182.08  Aligned_cols=64  Identities=39%  Similarity=0.752  Sum_probs=61.3

Q ss_pred             CCCC-cceeeHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhchhhcCcceecccccccC
Q psy2164           5 HPMT-KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQK   68 (68)
Q Consensus         5 ~~~~-kyWvPi~Wa~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~L~~yDWVpIPLvYtQv   68 (68)
                      .+++ |||+||+||.+|+++|++||+|++|..++.+++||++||++|++|++|||||||||||||
T Consensus       176 ~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR~~l~~L~~yDwVpIPL~YpQv  240 (450)
T KOG3547|consen  176 DSKYMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFRTGLSLLCNYDWVPIPLVYPQV  240 (450)
T ss_pred             cccccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhccccCCCceeccccccce
Confidence            3444 999999999999999999999999999999999999999999999999999999999997

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE)

Probab=98.82  E-value=3.7e-09  Score=73.79  Aligned_cols=61  Identities=26%  Similarity=0.497  Sum_probs=57.0

Q ss_pred             CCCCcceeeHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhchhhcCcceeccccccc
Q psy2164           5 HPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ   67 (68)
Q Consensus         5 ~~~~kyWvPi~Wa~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~L~~yDWVpIPLvYtQ   67 (68)
                      .++...+++..|+..+ ++++++|.+ ++..+..+.+++.+|+..++.+..++++|||++|+|
T Consensus       161 ~~~~p~~i~~~~~~~l-~~~~~~g~~-~~~~~~~l~~~l~~l~~~~g~~eri~~TPiP~~Y~~  221 (293)
T PF01062_consen  161 ADNPPNWILIQWSQRL-REARREGLI-DSFQLAQLDNELNALRDAQGGCERIKNTPIPFAYTQ  221 (293)
T ss_pred             hcCcHHHHHHHHHHHH-HHHHHcCCC-ChHHHHHHHHHHHHHHHHHhhhheeCCCcCCHHHHH
Confidence            4678899999999999 999999995 688899999999999999999999999999999998

It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.

>COG3781 Predicted membrane protein [Function unknown]

Probab=88.42  E-value=0.92  Score=33.64  Aligned_cols=48  Identities=19%  Similarity=0.343  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHHHHhhchhhcCcceecccccc
Q psy2164          15 TWATNIINRARREATITSDHMV---QTILNEMSDIRWRLGSLIGYDNVNLPLVYT   66 (68)
Q Consensus        15 ~Wa~~l~~~ar~eg~I~s~~~~---~~l~~ei~~fR~~l~~L~~yDWVpIPLvYt   66 (68)
                      -|.-.-++..|++|.++ +..+   +..++.|.+--++|+.+-+   .|||++||
T Consensus       164 ~wmGe~l~~q~r~g~l~-~~~~~sl~~~L~~~s~vlggCERI~~---TPiPfAYt  214 (306)
T COG3781         164 LWMGEWLQQQRRNGQLD-AIQFTSLDRRLNSISAVLGGCERIAY---TPIPFAYT  214 (306)
T ss_pred             HHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHhHHHHhc---CCccHHHH
Confidence            38888899999999995 5554   4455566666677777664   89999997

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00