Psyllid ID: psy2165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPDDVYADYEIEWNIFREFQGEAYHII
Secondary Structure (PSIPRED)
ccEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccEEEcccccccHcccccccccccccccccccccHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MDVYIPIFTVLQFCFYLGWLKVAEVLigpfgeddddiELNWLIDRHIKAAYMIVDEMHEEhpellkdqywdevvpkdlpytlasecyrrsepkgsaefykvkeaDSLYANITSrrksvapddvyadYEIEWNIFREFQGEAYHII
Flexible Loop (DISEMBL)
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASecyrrsepkgsaefykvkeadslyanitsrrksvapddvYADYEIEWNIFREFQGEAYHII
Low Complexity Region (SEG)
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPDDVYADYEIEWNIFREFQGEAYHII
Disordered region (IsUnstruct)
**VYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASECYRR*******EFYKVKEADSLYANITSRRKSVAPDDVYADYEIEWNIFREFQGEAYH**
Disordered Region (DISOPRED)
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYT****************************************************************
Disordered Region (DISEMBL)
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPDDVYADYEIEWNIFREFQGEAYHII
Disordered Region (DISPRO)
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEAD***************DDVYADYEIEWNIFREFQGEAY*II
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPDDVYADYEIEWNIFREFQGEAYHII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
O88870	551	Bestrophin-1 OS=Mus muscu	yes	N/A	0.717	0.188	0.514	1e-26
Q6UY87	585	Bestrophin-1 OS=Macaca fa	N/A	N/A	0.648	0.160	0.536	1e-25
Q8N1M1	668	Bestrophin-3 OS=Homo sapi	no	N/A	0.593	0.128	0.597	2e-25
Q6H1V1	669	Bestrophin-3 OS=Mus muscu	no	N/A	0.593	0.128	0.586	2e-25
O76090	585	Bestrophin-1 OS=Homo sapi	no	N/A	0.648	0.160	0.526	3e-25
Q8WMR7	428	Bestrophin-1 (Fragment) O	no	N/A	0.655	0.221	0.531	3e-23
Q8NFU0	473	Bestrophin-4 OS=Homo sapi	no	N/A	0.565	0.173	0.578	1e-22
Q8NFU1	509	Bestrophin-2 OS=Homo sapi	no	N/A	0.572	0.163	0.559	3e-21
Q8BGM5	508	Bestrophin-2 OS=Mus muscu	no	N/A	0.572	0.163	0.559	6e-21
P34672	632	Uncharacterized protein Z	no	N/A	0.510	0.117	0.540	2e-19

>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3

 Score =  118 bits (296), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           MD+ +P+FT+LQF FY+GWLKVAE LI PFGEDDDD E NW+IDR+++ + + VD MH+ 
Sbjct: 269 MDLVVPVFTILQFLFYMGWLKVAEQLINPFGEDDDDFETNWIIDRNLQVSLLSVDGMHQN 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEAD 105
            P + +D YW+E  P+  PYT AS   RR    GS     +K+ D
Sbjct: 329 LPPMERDMYWNEAAPQP-PYTAASARSRRHSFMGSTFNISLKKED 372

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.
Mus musculus (taxid: 10090)

>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 1/95 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+ +P+FT LQF FY+GWLKVAE LI PFGEDDDD E NW++DR+++ + + VDEMH++
Sbjct: 269 LDLVVPVFTFLQFFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQD 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
            P +  D YW+E  P   PYT AS  +RR+   GS
Sbjct: 329 LPRMEPDMYWNEPEPHP-PYTAASAQFRRASFMGS 362

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Macaca fascicularis (taxid: 9541)

>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+YIPIFT+LQF FY GWLKVAE LI PFGEDDDD E NW IDR+++ + + VDEMH  
Sbjct: 269 LDLYIPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMS 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECY 87
            P++ KD YWD+   +  PYTLA+  Y
Sbjct: 329 LPKMKKDIYWDDSAARP-PYTLAAADY 354

Forms calcium-sensitive (By similarity) chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+Y+PIFT+LQF FY GWLKVAE LI PFGEDDDD E NW IDR+++ + + VDEMH  
Sbjct: 269 LDLYVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMS 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECY 87
            P++ KD YWD+   +  PYTLA+  Y
Sbjct: 329 LPKMKKDIYWDDSAARP-PYTLAAADY 354

Forms calcium-sensitive (By similarity) chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1

 Score =  114 bits (284), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 1/95 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+ +P+FT LQF FY+GWLKVAE LI PFGEDDDD E NW++DR+++ + + VDEMH++
Sbjct: 269 LDLVVPVFTFLQFFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQD 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
            P +  D YW++  P+  PYT AS  +RR+   GS
Sbjct: 329 LPRMEPDMYWNKPEPQP-PYTAASAQFRRASFMGS 362

Forms calcium-sensitive chloride channels. Highly permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q8WMR7|BEST1_PIG Bestrophin-1 (Fragment) OS=Sus scrofa GN=BEST1 PE=1 SV=1

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           MD+ +P+FT LQF FY GWLKVAE LI PFGEDDDD E NW++DR ++ +   VDEMH +
Sbjct: 116 MDLVVPLFTFLQFFFYAGWLKVAEQLINPFGEDDDDFETNWIVDRSLQVSLSAVDEMHHD 175

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSA 96
            P + +D YW++  P   PYT AS   RR    GS 
Sbjct: 176 LPPMERDMYWNDPEPHP-PYTAASAQSRRPSFFGST 210

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Sus scrofa (taxid: 9823)

>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y+P+ T+LQF FY GWLKVAE +I PFGEDDDD E N LIDR+++ + + VDEM++  
Sbjct: 285 DMYVPLTTLLQFFFYAGWLKVAEQIINPFGEDDDDFETNQLIDRNLQVSLLSVDEMYQNL 344

Query: 62  PELLKDQYWDEVVPKDLPYTLAS 84
           P   KDQYWDE  P+  PYT+A+
Sbjct: 345 PPAEKDQYWDEDQPQP-PYTVAT 366

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+ +PIFT+LQF FY GWLKVAE LI PFGEDDDD E N+LIDR+ + + + VDEM+++
Sbjct: 269 LDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDD 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLAS 84
              L KD YWD    +  PYT A+
Sbjct: 329 LAVLEKDLYWDAAEAR-APYTAAT 351

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+ +PIFT+LQF FY GWLKVAE LI PFGEDDDD E N+LIDR+ + + + VDEM+++
Sbjct: 269 LDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDD 328

Query: 61  HPELLKDQYWDEVVPKDLPYTLAS 84
              L KD YWD    +  PYT A+
Sbjct: 329 LAMLEKDLYWDAAEAR-APYTAAT 351

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans GN=ZK688.2 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 55/74 (74%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +D+Y PI + LQF FY+GW+KVAE ++ PFGEDDDD E N LIDR+I    M+VD+ ++ 
Sbjct: 269 IDLYFPIMSTLQFIFYMGWMKVAEAMLNPFGEDDDDFECNALIDRNITMVLMMVDQGYDR 328

Query: 61  HPELLKDQYWDEVV 74
            P+L +D +WDE V
Sbjct: 329 APDLKRDDFWDEEV 342

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
328708187	700	PREDICTED: bestrophin-3-like isoform 2 [	0.875	0.181	0.809	8e-61
328708185	700	PREDICTED: bestrophin-3-like isoform 1 [	0.875	0.181	0.809	8e-61
189235903	1356	PREDICTED: similar to bestrophin 2,3,4,	0.875	0.093	0.803	5e-59
380018511	734	PREDICTED: uncharacterized protein LOC10	0.875	0.173	0.755	2e-58
312381229	776	hypothetical protein AND_06516 [Anophele	0.882	0.164	0.798	4e-58
345494944	894	PREDICTED: hypothetical protein LOC10011	0.875	0.142	0.751	4e-58
307169555	679	Bestrophin-3 [Camponotus floridanus]	0.875	0.187	0.748	9e-58
340716578	857	PREDICTED: hypothetical protein LOC10064	0.875	0.148	0.755	1e-57
350404239	855	PREDICTED: hypothetical protein LOC10074	0.875	0.148	0.755	1e-57
340716576	855	PREDICTED: hypothetical protein LOC10064	0.875	0.148	0.755	1e-57

>gi|328708187|ref|XP_003243619.1| PREDICTED: bestrophin-3-like isoform 2 [Acyrthosiphon pisum]

 Score =  238 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 106/131 (80%), Positives = 118/131 (90%), Gaps = 4/131 (3%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y+PI T+++FCF++GWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH
Sbjct: 277 DLYVPILTIIEFCFFVGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 336

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITS----RRKS 117
           PELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVKE+DSLYAN+       RK+
Sbjct: 337 PELLKDQYWDEVVPKDLPYTVASEHYRREEPKGSAECYKVKESDSLYANMAPMHHMHRKT 396

Query: 118 VAPDDVYADYE 128
             P+DVYADYE
Sbjct: 397 AVPEDVYADYE 407

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708185|ref|XP_001944701.2| PREDICTED: bestrophin-3-like isoform 1 [Acyrthosiphon pisum]

 Score =  238 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 106/131 (80%), Positives = 118/131 (90%), Gaps = 4/131 (3%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y+PI T+++FCF++GWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH
Sbjct: 277 DLYVPILTIIEFCFFVGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 336

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITS----RRKS 117
           PELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVKE+DSLYAN+       RK+
Sbjct: 337 PELLKDQYWDEVVPKDLPYTVASEHYRREEPKGSAECYKVKESDSLYANMAPMHHMHRKT 396

Query: 118 VAPDDVYADYE 128
             P+DVYADYE
Sbjct: 397 AVPEDVYADYE 407

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235903|ref|XP_968436.2| PREDICTED: similar to bestrophin 2,3,4, partial [Tribolium castaneum]

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 102/127 (80%), Positives = 113/127 (88%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FT +QFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH
Sbjct: 38  DMYFPFFTAIQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 97

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPD 121
           PELLKDQYWDEVVPK+LPYT+ASE YRR EPKGSAE YK+K  D LYAN+ + +KS+  D
Sbjct: 98  PELLKDQYWDEVVPKELPYTVASEHYRREEPKGSAEMYKIKTTDGLYANLLAPKKSLIHD 157

Query: 122 DVYADYE 128
           D+YADYE
Sbjct: 158 DMYADYE 164

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018511|ref|XP_003693171.1| PREDICTED: uncharacterized protein LOC100868685 [Apis florea]

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/135 (75%), Positives = 112/135 (82%), Gaps = 8/135 (5%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FT LQFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA YMIVDEMHEEH
Sbjct: 119 DMYFPFFTALQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAGYMIVDEMHEEH 178

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANIT--------S 113
           PELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVK++D+LYAN+          
Sbjct: 179 PELLKDQYWDEVVPKDLPYTVASEQYRREEPKGSAEHYKVKDSDALYANVMLGTQIHNHV 238

Query: 114 RRKSVAPDDVYADYE 128
           + +    DD+YADYE
Sbjct: 239 QHRKTHQDDMYADYE 253

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381229|gb|EFR27022.1| hypothetical protein AND_06516 [Anopheles darlingi]

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 103/129 (79%), Positives = 116/129 (89%), Gaps = 1/129 (0%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
           +DV+ P+FTVLQF FY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA+YMIVDEMH+E
Sbjct: 237 LDVFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKASYMIVDEMHDE 296

Query: 61  HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITS-RRKSVA 119
           HPELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVKEAD++YANI +   K + 
Sbjct: 297 HPELLKDQYWDEVVPKDLPYTVASEHYRREEPKGSAEHYKVKEADAVYANIGAVGGKRMM 356

Query: 120 PDDVYADYE 128
            D++YADYE
Sbjct: 357 NDEMYADYE 365

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494944|ref|XP_001603406.2| PREDICTED: hypothetical protein LOC100119673 [Nasonia vitripennis]

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/141 (75%), Positives = 113/141 (80%), Gaps = 14/141 (9%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FTVLQFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA YMIVDEMHEEH
Sbjct: 276 DMYFPFFTVLQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAGYMIVDEMHEEH 335

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANI---------- 111
           PELLKDQYWDEV+PKDLPYT+ASE YRR EPKGSAE YKVKE+D+LYAN+          
Sbjct: 336 PELLKDQYWDEVIPKDLPYTVASENYRREEPKGSAEHYKVKESDALYANVFLGPTVHGGH 395

Query: 112 -TSRRKSVAP---DDVYADYE 128
               R   A    DDVYADYE
Sbjct: 396 AVGHRGGKAAHMQDDVYADYE 416

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169555|gb|EFN62197.1| Bestrophin-3 [Camponotus floridanus]

 Score =  228 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 101/135 (74%), Positives = 111/135 (82%), Gaps = 8/135 (5%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FT LQFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA YMIVDEMHEEH
Sbjct: 109 DMYFPFFTTLQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAGYMIVDEMHEEH 168

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANIT--------S 113
           PELLKDQYWDEVVPKDLPYT+ASE YR+ EPKGSAE YKVK++D+LYAN+          
Sbjct: 169 PELLKDQYWDEVVPKDLPYTVASEQYRKEEPKGSAEHYKVKDSDALYANVMLGTQIHSHV 228

Query: 114 RRKSVAPDDVYADYE 128
             +    DD+YADYE
Sbjct: 229 HHRKAHQDDMYADYE 243

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716578|ref|XP_003396774.1| PREDICTED: hypothetical protein LOC100649883 isoform 2 [Bombus terrestris]

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/135 (75%), Positives = 112/135 (82%), Gaps = 8/135 (5%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FT LQFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA YMIVDEMHEEH
Sbjct: 277 DMYFPFFTALQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAGYMIVDEMHEEH 336

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANIT--------S 113
           PELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVK++D+LYAN+          
Sbjct: 337 PELLKDQYWDEVVPKDLPYTVASEQYRREEPKGSAEHYKVKDSDALYANVILGPQIHNHV 396

Query: 114 RRKSVAPDDVYADYE 128
           + +    DD+YADYE
Sbjct: 397 QHRKTHQDDMYADYE 411

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404239|ref|XP_003487044.1| PREDICTED: hypothetical protein LOC100747717 [Bombus impatiens]

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/135 (75%), Positives = 112/135 (82%), Gaps = 8/135 (5%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FT LQFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA YMIVDEMHEEH
Sbjct: 275 DMYFPFFTALQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAGYMIVDEMHEEH 334

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANIT--------S 113
           PELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVK++D+LYAN+          
Sbjct: 335 PELLKDQYWDEVVPKDLPYTVASEQYRREEPKGSAEHYKVKDSDALYANVILGPQIHNHV 394

Query: 114 RRKSVAPDDVYADYE 128
           + +    DD+YADYE
Sbjct: 395 QHRKTHQDDMYADYE 409

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716576|ref|XP_003396773.1| PREDICTED: hypothetical protein LOC100649883 isoform 1 [Bombus terrestris]

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/135 (75%), Positives = 112/135 (82%), Gaps = 8/135 (5%)

Query: 2   DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
           D+Y P FT LQFCFY+GWLKVAEVLI PFGEDDDDIELNWLIDRHIKA YMIVDEMHEEH
Sbjct: 275 DMYFPFFTALQFCFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAGYMIVDEMHEEH 334

Query: 62  PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANIT--------S 113
           PELLKDQYWDEVVPKDLPYT+ASE YRR EPKGSAE YKVK++D+LYAN+          
Sbjct: 335 PELLKDQYWDEVVPKDLPYTVASEQYRREEPKGSAEHYKVKDSDALYANVILGPQIHNHV 394

Query: 114 RRKSVAPDDVYADYE 128
           + +    DD+YADYE
Sbjct: 395 QHRKTHQDDMYADYE 409

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0035696	809	Best2 "Bestrophin 2" [Drosophi	0.875	0.156	0.773	1.1e-50
FB|FBgn0040238	769	Best1 "Bestrophin 1" [Drosophi	0.793	0.149	0.565	8.7e-35
FB|FBgn0036491	526	Best4 "Bestrophin 4" [Drosophi	0.641	0.176	0.621	3.8e-30
FB|FBgn0036492	535	Best3 "Bestrophin 3" [Drosophi	0.862	0.233	0.480	5.6e-30
UNIPROTKB|E1C3A0	425	BEST1 "Uncharacterized protein	0.648	0.221	0.578	3.2e-26
MGI|MGI:1346332	551	Best1 "bestrophin 1" [Mus musc	0.958	0.252	0.423	5.2e-26
RGD|1311656	550	Best1 "bestrophin 1" [Rattus n	0.724	0.190	0.518	1.4e-25
UNIPROTKB|A5H7G8	580	VMD2 "Bestrophin" [Canis lupus	0.648	0.162	0.547	3.6e-25
UNIPROTKB|Q6UY87	585	BEST1 "Bestrophin-1" [Macaca f	0.648	0.160	0.536	7.9e-25
UNIPROTKB|O76090	585	BEST1 "Bestrophin-1" [Homo sap	0.648	0.160	0.526	1.3e-24

FB|FBgn0035696 Best2 "Bestrophin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 531 (192.0 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 99/128 (77%), Positives = 111/128 (86%)

Query:     2 DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
             D++ P+FTVLQF FY+GWLKVAEVLI PFGEDD DIELNWLIDRHIKAAYMIVDEMHEEH
Sbjct:   279 DLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDGDIELNWLIDRHIKAAYMIVDEMHEEH 338

Query:    62 PELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANIT-SRRKSVAP 120
             PELL+DQYW+ VVPKDLPYT+ASE YR+ EPKGSAE YKVK+ D++YANI     K +  
Sbjct:   339 PELLRDQYWECVVPKDLPYTVASEHYRKDEPKGSAEKYKVKKEDAMYANIMPGGGKRMLS 398

Query:   121 DDVYADYE 128
             DDVYADYE
Sbjct:   399 DDVYADYE 406

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0006820 "anion transport" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

FB|FBgn0040238 Best1 "Bestrophin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 385 (140.6 bits), Expect = 8.7e-35, P = 8.7e-35
 Identities = 65/115 (56%), Positives = 91/115 (79%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             +D+Y P+FT LQF FY+GWLKVAE LI PFGEDDDD E+NW++DR+++ +Y+IVDEMH +
Sbjct:   276 VDLYFPVFTTLQFFFYMGWLKVAESLINPFGEDDDDFEVNWMVDRNLQVSYLIVDEMHHD 335

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRR 115
             HPELLKDQYWDEV P +LPYT+A+E +R + P+ S    +V +  ++ + ++S R
Sbjct:   336 HPELLKDQYWDEVFPNELPYTIAAERFRENHPEPSTAKIEVPKNAAMPSTMSSVR 390

GO:0005254 "chloride channel activity" evidence=NAS;IDA

GO:0072320 "volume-sensitive chloride channel activity" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0006884 "cell volume homeostasis" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

FB|FBgn0036491 Best4 "Bestrophin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 59/95 (62%), Positives = 73/95 (76%)

Query:     4 YIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPE 63
             + PI TVLQF FY+GWLKVAE LI PFGEDDDD ELNW+IDR++  +Y IVDEMH+EHPE
Sbjct:   276 WFPILTVLQFFFYMGWLKVAETLINPFGEDDDDFELNWIIDRNLTVSYCIVDEMHQEHPE 335

Query:    64 LLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEF 98
             L+KDQYW+EV P ++PY  A    R++ P  S  +
Sbjct:   336 LVKDQYWEEVFPNEIPY--AQPKMRQNPPAASTAY 368

GO:0006820 "anion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

FB|FBgn0036492 Best3 "Bestrophin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 5.6e-30, P = 5.6e-30
 Identities = 62/129 (48%), Positives = 87/129 (67%)

Query:     4 YIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPE 63
             Y P+F+ L+F F++GWLKVAE LI PFG+DDDD ELNWLIDR+++ +Y+IVDEMH +HP+
Sbjct:   276 YFPLFSTLEFFFFMGWLKVAETLICPFGDDDDDFELNWLIDRNLQVSYLIVDEMHNDHPQ 335

Query:    64 LLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPDDV 123
             L++DQYWDEV P +LPY + S+  R   P+ S     + +   +   +T    S+  D  
Sbjct:   336 LVRDQYWDEVFPAELPYAVESD--RAEHPEASTARLGIPKV--VPVTMTKSEVSLENDFT 391

Query:   124 YADYEIEWN 132
               D E E+N
Sbjct:   392 EFDDEDEYN 400

GO:0006820 "anion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

UNIPROTKB|E1C3A0 BEST1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             +D+++P+FT LQF FY GWLKVAE LI PFGEDDDD E NWLIDR+++ + M VDEMH++
Sbjct:   269 LDLFVPVFTFLQFFFYAGWLKVAEQLINPFGEDDDDFETNWLIDRNLQVSLMAVDEMHQD 328

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
              P L KD YW+E  P+  PYT A+  Y+R    GS
Sbjct:   329 LPILEKDLYWNEPDPQP-PYTAATAEYKRPSFLGS 362

GO:0005254 "chloride channel activity" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0051924 "regulation of calcium ion transport" evidence=IEA

MGI|MGI:1346332 Best1 "bestrophin 1" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 61/144 (42%), Positives = 86/144 (59%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             MD+ +P+FT+LQF FY+GWLKVAE LI PFGEDDDD E NW+IDR+++ + + VD MH+ 
Sbjct:   269 MDLVVPVFTILQFLFYMGWLKVAEQLINPFGEDDDDFETNWIIDRNLQVSLLSVDGMHQN 328

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAP 120
              P + +D YW+E  P+  PYT AS   RR    GS     +K+ D     + S+ ++   
Sbjct:   329 LPPMERDMYWNEAAPQP-PYTAASARSRRHSFMGSTFNISLKKED---LELWSKEEADT- 383

Query:   121 DDVYADYEIEWNIFREFQGEAYHI 144
             D   + Y      F   Q + YH+
Sbjct:   384 DKKESGYSSTIGCFLGLQPKNYHL 407

GO:0005216 "ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0030321 "transepithelial chloride transport" evidence=ISO

GO:0034707 "chloride channel complex" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0051924 "regulation of calcium ion transport" evidence=IMP

RGD|1311656 Best1 "bestrophin 1" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 55/106 (51%), Positives = 72/106 (67%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             MD+ +P+FT+LQF FY+GWLKVAE LI PFGEDDDD E NW+IDR+++ + + VD MH +
Sbjct:   269 MDLVVPVFTILQFLFYMGWLKVAEQLINPFGEDDDDFETNWIIDRNLQVSLLSVDGMHHD 328

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADS 106
              P L +D YW+E  P+  PYT AS    R    GS     +K+ DS
Sbjct:   329 VPPLERDLYWNEAAPQP-PYTAASAGSHRQSFMGSTFNMSLKKKDS 373

GO:0003674 "molecular_function" evidence=ND

GO:0005254 "chloride channel activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006821 "chloride transport" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016323 "basolateral plasma membrane" evidence=IEA;ISO

GO:0030321 "transepithelial chloride transport" evidence=IEA;ISO

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA;ISO

GO:0051924 "regulation of calcium ion transport" evidence=IEA;ISO

UNIPROTKB|A5H7G8 VMD2 "Bestrophin" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 52/95 (54%), Positives = 69/95 (72%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             +D+ +P+FT LQF FY GWLKVAE LI PFGEDDDD E NW++DR ++ + + VDEMH++
Sbjct:   269 LDLVVPVFTFLQFFFYAGWLKVAEQLINPFGEDDDDFETNWIVDRSLQVSLLAVDEMHQD 328

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
              P + +D YW+E  P+  PYT AS  YRR+   GS
Sbjct:   329 LPPMERDMYWNEPEPQP-PYTAASAQYRRASFLGS 362

GO:0051924 "regulation of calcium ion transport" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|Q6UY87 BEST1 "Bestrophin-1" [Macaca fascicularis (taxid:9541)]

 Score = 290 (107.1 bits), Expect = 7.9e-25, P = 7.9e-25
 Identities = 51/95 (53%), Positives = 69/95 (72%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             +D+ +P+FT LQF FY+GWLKVAE LI PFGEDDDD E NW++DR+++ + + VDEMH++
Sbjct:   269 LDLVVPVFTFLQFFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQD 328

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
              P +  D YW+E  P   PYT AS  +RR+   GS
Sbjct:   329 LPRMEPDMYWNEPEPHP-PYTAASAQFRRASFMGS 362

GO:0016323 "basolateral plasma membrane" evidence=ISS

UNIPROTKB|O76090 BEST1 "Bestrophin-1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 50/95 (52%), Positives = 70/95 (73%)

Query:     1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
             +D+ +P+FT LQF FY+GWLKVAE LI PFGEDDDD E NW++DR+++ + + VDEMH++
Sbjct:   269 LDLVVPVFTFLQFFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQD 328

Query:    61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
              P +  D YW++  P+  PYT AS  +RR+   GS
Sbjct:   329 LPRMEPDMYWNKPEPQP-PYTAASAQFRRASFMGS 362

GO:0034707 "chloride channel complex" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0051924 "regulation of calcium ion transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0007601 "visual perception" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005254 "chloride channel activity" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

GO:0030321 "transepithelial chloride transport" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88870	BEST1_MOUSE	No assigned EC number	0.5142	0.7172	0.1887	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
pfam01062	284	pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid	9e-19

>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel

 Score = 79.5 bits (197), Expect = 9e-19
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 1   MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWL---IDRHIK 48
           +  + P+FTVL F F+ G  KV E L  PFGEDD+D+ LN L   I+R++ 
Sbjct: 233 LGWFTPLFTVLIFYFFFGLDKVGEELENPFGEDDNDLPLNALCRTIERNLL 283

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG3547|consensus	450		100.0
PF01062	293	Bestrophin: Bestrophin, RFP-TM, chloride channel;	98.89

>KOG3547|consensus

Probab=100.00  E-value=3.8e-40  Score=292.52  Aligned_cols=113  Identities=50%  Similarity=0.840  Sum_probs=99.8

Q ss_pred             CceeechhhHHHHHHHHHHHHHHHHHhcCCCCCCChhhHHHHHHhhHHHHHHHHhhhhccCCCccccccCCCCCCCCCCc
Q psy2165           1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVPKDLPY   80 (145)
Q Consensus         1 iD~y~Pv~t~lQF~Fy~GWLKVae~llNPFGeDDDDFE~n~lidrnl~v~~~iVD~~~~~~P~l~kD~fW~~~~~~~lPy   80 (145)
                      +|+|||+||++||+||||||||||.|+|||||||||||||||||||+++|++|||++|+++|+|.+|.||++..+. +.|
T Consensus       269 id~~fPi~T~lQFiF~vGWmKVaE~LlNP~GEDDDDFE~N~liDRNl~vgl~IVD~~~~~~P~l~~D~f~d~~~~~-p~y  347 (450)
T KOG3547|consen  269 IDLYFPIMTILQFIFYVGWLKVAEVLLNPLGEDDDDFECNYLIDRNLTVGLAIVDEMHDDHPELEKDQFWDDVDVL-PLY  347 (450)
T ss_pred             cceeehhHHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHhhhhhHHHHHHHhhhhhccCccccccccCCCCCcC-CCC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999997663 558


Q ss_pred             chhhhhc-cCCCCCCCcccceeccccccc-ccccCC
Q psy2165          81 TLASECY-RRSEPKGSAEFYKVKEADSLY-ANITSR  114 (145)
Q Consensus        81 T~aS~~~-~~~~~~GS~~~~~v~~~d~~~-~n~~~~  114 (145)
                      +.+|... +.+.+.||++++++.+.+... .++.++
T Consensus       348 ~~~s~~~~~~~~~~gS~~~~~~~~~~~~~~v~~~~~  383 (450)
T KOG3547|consen  348 SEASADSKNNHALVGSAANVSLAKEDEENEVRMVPR  383 (450)
T ss_pred             chhhhhccccccCCCChhhhhccccccccceeeccc
Confidence            8877554 455689999999988877655 344443

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE)

Probab=98.89  E-value=1.1e-09  Score=88.81  Aligned_cols=47  Identities=34%  Similarity=0.641  Sum_probs=44.6

Q ss_pred             ceeechhhHHHHHHHHHHHHHHHHHhcCCCCCCChhhHHHH---HHhhHH
Q psy2165           2 DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWL---IDRHIK   48 (145)
Q Consensus         2 D~y~Pv~t~lQF~Fy~GWLKVae~llNPFGeDDDDFE~n~l---idrnl~   48 (145)
                      +.+.|+++++++++|+||.++|+.+.||||.|++|++++.+   |+||++
T Consensus       243 ~~~~~~~~~l~~~~~~gl~~ig~~ledPFg~d~~dlpl~~~~~~ie~~l~  292 (293)
T PF01062_consen  243 GWLTPPITFLVSFFFLGLEEIGEELEDPFGNDPNDLPLDAICRTIERNLR  292 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCcCcHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999   999986

It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00